Query 043250
Match_columns 507
No_of_seqs 424 out of 2848
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2.4E-46 8.1E-51 325.1 11.9 166 1-170 8-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2E-45 6.7E-50 323.9 12.3 165 1-167 35-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.4E-41 8.1E-46 355.9 21.8 295 177-483 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-38 3.3E-42 360.2 23.4 303 168-482 118-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 6.6E-37 2.3E-41 326.2 22.1 325 168-505 118-494 (591)
6 1vt4_I APAF-1 related killer D 100.0 4.7E-37 1.6E-41 328.7 17.6 299 174-504 128-460 (1221)
7 3h16_A TIR protein; bacteria T 100.0 1.3E-29 4.6E-34 219.7 3.0 115 1-118 20-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 9.1E-26 3.1E-30 192.4 0.6 100 1-102 10-112 (146)
9 2js7_A Myeloid differentiation 99.9 8.1E-23 2.8E-27 177.2 2.5 97 1-99 16-117 (160)
10 2qen_A Walker-type ATPase; unk 99.8 8.5E-20 2.9E-24 180.9 22.4 290 165-476 3-349 (350)
11 1fyx_A TOLL-like receptor 2; b 99.8 6.1E-23 2.1E-27 176.2 -0.4 94 1-96 5-103 (149)
12 1t3g_A X-linked interleukin-1 99.8 9.4E-22 3.2E-26 170.3 6.1 99 1-99 2-114 (159)
13 2j67_A TOLL like receptor 10; 99.8 2.4E-22 8.1E-27 176.9 1.8 95 1-97 35-134 (178)
14 2fna_A Conserved hypothetical 99.8 1.5E-19 5.1E-24 179.6 19.0 285 166-475 5-356 (357)
15 1w5s_A Origin recognition comp 99.7 4.3E-17 1.5E-21 165.3 20.2 280 171-460 19-371 (412)
16 2qby_B CDC6 homolog 3, cell di 99.7 1.3E-14 4.5E-19 145.5 25.4 273 172-459 18-338 (384)
17 2qby_A CDC6 homolog 1, cell di 99.6 6.9E-15 2.4E-19 147.4 20.8 279 171-460 17-348 (386)
18 2v1u_A Cell division control p 99.6 6.6E-14 2.3E-18 140.4 25.5 278 172-460 17-351 (387)
19 1fnn_A CDC6P, cell division co 99.6 7E-14 2.4E-18 140.4 22.9 300 172-482 15-387 (389)
20 3j0a_A TOLL-like receptor 5; m 99.5 2.8E-15 9.4E-20 165.8 5.4 98 1-100 670-775 (844)
21 1njg_A DNA polymerase III subu 99.5 2E-12 6.9E-17 120.5 17.8 187 171-376 20-231 (250)
22 2chg_A Replication factor C sm 99.4 2.4E-12 8.1E-17 118.3 14.8 188 170-374 13-205 (226)
23 1iqp_A RFCS; clamp loader, ext 99.3 7.2E-11 2.5E-15 115.3 16.4 191 168-375 19-214 (327)
24 1sxj_B Activator 1 37 kDa subu 99.3 3.9E-11 1.3E-15 117.0 14.4 187 170-373 17-210 (323)
25 1hqc_A RUVB; extended AAA-ATPa 99.2 8.5E-10 2.9E-14 107.6 20.0 260 171-472 9-309 (324)
26 2chq_A Replication factor C sm 99.2 6.4E-10 2.2E-14 108.1 18.1 189 167-373 10-204 (319)
27 1jr3_A DNA polymerase III subu 99.1 4.3E-09 1.5E-13 104.7 18.0 191 172-374 14-222 (373)
28 3pfi_A Holliday junction ATP-d 99.0 1.7E-08 6E-13 98.9 20.5 257 172-467 27-320 (338)
29 1sxj_D Activator 1 41 kDa subu 98.9 6.8E-08 2.3E-12 95.1 21.1 197 169-373 32-235 (353)
30 1jbk_A CLPB protein; beta barr 98.9 2.2E-08 7.4E-13 89.2 14.0 150 172-337 20-194 (195)
31 3h4m_A Proteasome-activating n 98.9 6.7E-08 2.3E-12 92.2 17.5 182 170-373 13-231 (285)
32 3bos_A Putative DNA replicatio 98.9 5.8E-09 2E-13 96.8 9.3 176 172-375 26-219 (242)
33 3d8b_A Fidgetin-like protein 1 98.9 8.9E-08 3E-12 94.5 18.0 202 150-375 63-297 (357)
34 1d2n_A N-ethylmaleimide-sensit 98.8 1.6E-07 5.5E-12 89.0 19.0 168 174-365 33-229 (272)
35 1sxj_A Activator 1 95 kDa subu 98.8 5E-08 1.7E-12 101.2 16.7 192 169-372 34-252 (516)
36 3te6_A Regulatory protein SIR3 98.8 4E-08 1.4E-12 94.3 14.1 162 175-341 21-211 (318)
37 1sxj_E Activator 1 40 kDa subu 98.8 4.9E-08 1.7E-12 96.3 14.8 203 166-373 6-237 (354)
38 3eie_A Vacuolar protein sortin 98.8 3.3E-07 1.1E-11 89.1 19.0 183 171-374 15-229 (322)
39 3uk6_A RUVB-like 2; hexameric 98.8 1.2E-07 4.1E-12 94.1 16.1 198 173-374 43-304 (368)
40 2z4s_A Chromosomal replication 98.8 4.5E-08 1.5E-12 99.3 13.1 183 174-373 105-306 (440)
41 1l8q_A Chromosomal replication 98.7 2.7E-07 9.1E-12 89.8 16.0 180 173-371 10-206 (324)
42 2qz4_A Paraplegin; AAA+, SPG7, 98.7 4.4E-07 1.5E-11 85.3 16.3 181 174-374 6-223 (262)
43 3pvs_A Replication-associated 98.7 3.8E-07 1.3E-11 92.3 16.8 179 171-373 23-215 (447)
44 2qp9_X Vacuolar protein sortin 98.7 1.4E-06 4.6E-11 85.9 19.7 183 172-374 49-262 (355)
45 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.5E-06 5E-11 84.4 19.4 183 173-375 11-225 (322)
46 2zan_A Vacuolar protein sortin 98.6 1.3E-06 4.5E-11 88.6 19.4 185 171-374 131-346 (444)
47 2p65_A Hypothetical protein PF 98.6 2.4E-07 8.2E-12 81.9 12.0 50 172-223 20-69 (187)
48 3u61_B DNA polymerase accessor 98.6 1.1E-07 3.6E-12 92.7 10.4 179 170-370 22-213 (324)
49 3vfd_A Spastin; ATPase, microt 98.6 8.8E-07 3E-11 88.4 17.4 184 169-374 110-327 (389)
50 3b9p_A CG5977-PA, isoform A; A 98.6 5.5E-07 1.9E-11 86.4 15.3 185 169-374 16-234 (297)
51 3syl_A Protein CBBX; photosynt 98.6 4E-07 1.4E-11 87.9 14.1 149 175-341 32-217 (309)
52 1sxj_C Activator 1 40 kDa subu 98.6 1.2E-06 4E-11 85.9 16.6 184 171-371 22-210 (340)
53 3cf0_A Transitional endoplasmi 98.6 1.1E-06 3.9E-11 84.4 15.6 175 173-368 14-223 (301)
54 1a5t_A Delta prime, HOLB; zinc 98.6 3.2E-06 1.1E-10 82.5 18.7 167 181-373 9-205 (334)
55 1in4_A RUVB, holliday junction 98.5 1.2E-05 4E-10 78.4 20.9 257 173-468 24-318 (334)
56 3n70_A Transport activator; si 98.4 4.8E-07 1.7E-11 76.8 7.8 113 175-311 2-116 (145)
57 3hu3_A Transitional endoplasmi 98.4 6.1E-06 2.1E-10 84.4 17.2 180 174-373 204-415 (489)
58 3pxg_A Negative regulator of g 98.4 3.3E-06 1.1E-10 86.3 14.8 147 172-341 178-338 (468)
59 4b4t_J 26S protease regulatory 98.4 9.8E-06 3.4E-10 79.8 16.5 171 174-366 148-354 (405)
60 4b4t_L 26S protease subunit RP 98.3 1.5E-05 5.1E-10 79.7 16.9 172 173-366 180-387 (437)
61 1qvr_A CLPB protein; coiled co 98.3 2.9E-06 1E-10 93.3 11.3 149 172-340 168-344 (854)
62 4b4t_H 26S protease regulatory 98.3 4E-05 1.4E-09 76.5 18.2 170 174-365 209-414 (467)
63 1lv7_A FTSH; alpha/beta domain 98.3 1.8E-05 6.2E-10 73.9 15.2 181 171-372 9-224 (257)
64 3ec2_A DNA replication protein 98.2 2.4E-06 8.4E-11 75.3 8.2 114 181-311 21-143 (180)
65 1ofh_A ATP-dependent HSL prote 98.2 1E-05 3.5E-10 77.8 12.9 49 174-222 15-75 (310)
66 4b4t_M 26S protease regulatory 98.2 1.6E-05 5.5E-10 79.4 14.4 171 173-365 180-386 (434)
67 1r6b_X CLPA protein; AAA+, N-t 98.2 1.1E-05 3.7E-10 87.8 14.0 151 172-341 184-362 (758)
68 2w58_A DNAI, primosome compone 98.2 5.9E-06 2E-10 74.2 9.7 96 173-283 24-125 (202)
69 4b4t_K 26S protease regulatory 98.2 2.5E-05 8.5E-10 77.9 14.7 170 174-365 172-378 (428)
70 4b4t_I 26S protease regulatory 98.2 6.6E-05 2.2E-09 74.2 17.0 170 174-365 182-387 (437)
71 2r62_A Cell division protease 98.1 1.4E-06 4.8E-11 82.2 4.8 153 171-341 8-196 (268)
72 2bjv_A PSP operon transcriptio 98.1 3E-05 1E-09 72.8 13.9 49 174-222 6-54 (265)
73 3pxi_A Negative regulator of g 98.1 1.6E-05 5.5E-10 86.4 13.6 147 172-341 178-338 (758)
74 2gno_A DNA polymerase III, gam 98.1 2.3E-05 8E-10 75.0 13.0 146 178-341 1-152 (305)
75 4fcw_A Chaperone protein CLPB; 98.1 2.1E-05 7.1E-10 75.7 12.3 50 174-223 17-73 (311)
76 2ce7_A Cell division protein F 98.1 7.5E-05 2.6E-09 75.8 16.4 172 173-366 15-221 (476)
77 1ojl_A Transcriptional regulat 98.1 1.7E-05 6E-10 76.1 11.0 48 174-221 2-49 (304)
78 3co5_A Putative two-component 98.0 1.9E-06 6.4E-11 73.0 2.9 49 174-222 4-52 (143)
79 2c9o_A RUVB-like 1; hexameric 98.0 0.00028 9.6E-09 71.7 18.0 95 275-372 297-409 (456)
80 3cf2_A TER ATPase, transitiona 97.9 0.00014 4.8E-09 78.1 15.1 171 174-366 204-407 (806)
81 2kjq_A DNAA-related protein; s 97.9 1.2E-05 4.1E-10 68.4 5.3 37 196-232 35-71 (149)
82 1ixz_A ATP-dependent metallopr 97.9 0.00027 9.2E-09 65.7 15.0 174 172-366 14-221 (254)
83 1iy2_A ATP-dependent metallopr 97.8 0.00053 1.8E-08 64.7 16.1 177 169-366 35-245 (278)
84 3pxi_A Negative regulator of g 97.8 0.00012 4.2E-09 79.5 12.0 149 174-341 491-675 (758)
85 1eiw_A Hypothetical protein MT 97.7 3.1E-05 1.1E-09 61.4 4.8 70 1-93 4-73 (111)
86 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00069 2.4E-08 69.1 15.7 175 171-366 28-236 (499)
87 1ypw_A Transitional endoplasmi 97.7 0.00034 1.1E-08 76.2 13.8 149 174-341 204-385 (806)
88 3t15_A Ribulose bisphosphate c 97.6 0.00082 2.8E-08 63.9 14.4 28 196-223 35-62 (293)
89 1um8_A ATP-dependent CLP prote 97.5 0.00065 2.2E-08 67.1 12.7 26 197-222 72-97 (376)
90 2x8a_A Nuclear valosin-contain 97.5 0.005 1.7E-07 57.8 17.1 124 200-341 47-191 (274)
91 2qgz_A Helicase loader, putati 97.4 0.0002 6.9E-09 68.7 7.3 51 182-232 136-188 (308)
92 1qvr_A CLPB protein; coiled co 97.4 0.0017 5.7E-08 71.4 14.9 50 174-223 558-614 (854)
93 3m6a_A ATP-dependent protease 97.4 0.00056 1.9E-08 71.0 10.5 158 175-341 82-266 (543)
94 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00061 2.1E-08 74.0 10.0 48 174-221 458-512 (758)
95 1jr3_D DNA polymerase III, del 97.3 0.005 1.7E-07 59.8 15.4 156 196-372 17-184 (343)
96 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.0017 5.9E-08 66.3 12.0 45 174-222 22-66 (500)
97 2cvh_A DNA repair and recombin 97.1 0.0014 4.9E-08 59.1 8.3 45 185-232 8-52 (220)
98 2r44_A Uncharacterized protein 97.0 0.00039 1.3E-08 67.5 4.4 47 173-223 26-72 (331)
99 3hr8_A Protein RECA; alpha and 96.9 0.0043 1.5E-07 60.3 10.7 50 183-232 46-96 (356)
100 3cf2_A TER ATPase, transitiona 96.9 0.00095 3.3E-08 71.7 6.6 171 174-365 477-682 (806)
101 1g5t_A COB(I)alamin adenosyltr 96.9 0.00085 2.9E-08 59.0 5.1 114 198-312 29-164 (196)
102 1ye8_A Protein THEP1, hypothet 96.8 0.024 8.1E-07 49.3 13.9 23 199-221 2-24 (178)
103 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0016 5.4E-08 62.0 5.6 24 197-220 123-146 (331)
104 3jvv_A Twitching mobility prot 96.7 0.00075 2.6E-08 65.9 3.2 109 198-314 124-234 (356)
105 2orw_A Thymidine kinase; TMTK, 96.6 0.00084 2.9E-08 59.0 2.8 108 198-311 4-113 (184)
106 1qhx_A CPT, protein (chloramph 96.6 0.001 3.5E-08 57.9 3.2 25 198-222 4-28 (178)
107 1rz3_A Hypothetical protein rb 96.6 0.0024 8.3E-08 56.9 5.6 44 179-222 3-47 (201)
108 3hws_A ATP-dependent CLP prote 96.6 0.0015 5E-08 64.3 4.5 48 175-222 16-76 (363)
109 3io5_A Recombination and repai 96.6 0.0074 2.5E-07 57.1 9.0 34 199-232 30-65 (333)
110 1xp8_A RECA protein, recombina 96.5 0.011 3.6E-07 57.9 10.1 52 181-232 57-109 (366)
111 2b8t_A Thymidine kinase; deoxy 96.5 0.004 1.4E-07 56.3 6.4 106 196-311 11-126 (223)
112 2zr9_A Protein RECA, recombina 96.4 0.007 2.4E-07 58.9 7.9 50 183-232 46-96 (349)
113 1g8p_A Magnesium-chelatase 38 96.4 0.002 6.9E-08 62.7 4.2 49 172-222 22-70 (350)
114 3kb2_A SPBC2 prophage-derived 96.4 0.0017 6E-08 56.0 3.2 25 198-222 2-26 (173)
115 1tue_A Replication protein E1; 96.3 0.0037 1.3E-07 55.3 4.8 42 181-223 43-84 (212)
116 3c8u_A Fructokinase; YP_612366 96.3 0.0036 1.2E-07 56.1 4.8 28 195-222 20-47 (208)
117 2eyu_A Twitching motility prot 96.3 0.0017 5.8E-08 60.5 2.7 111 196-313 24-135 (261)
118 3bh0_A DNAB-like replicative h 96.2 0.0055 1.9E-07 58.8 6.3 66 180-252 52-117 (315)
119 3trf_A Shikimate kinase, SK; a 96.2 0.0024 8.3E-08 55.9 3.2 25 197-221 5-29 (185)
120 3dzd_A Transcriptional regulat 96.2 0.12 4.2E-06 50.4 15.8 48 174-221 129-176 (368)
121 1ex7_A Guanylate kinase; subst 96.2 0.0017 5.9E-08 56.9 2.1 28 198-225 2-29 (186)
122 1v5w_A DMC1, meiotic recombina 96.2 0.023 7.8E-07 55.1 10.3 49 184-232 109-163 (343)
123 1nks_A Adenylate kinase; therm 96.1 0.0041 1.4E-07 54.6 4.5 26 198-223 2-27 (194)
124 3vaa_A Shikimate kinase, SK; s 96.1 0.0028 9.7E-08 56.3 3.3 25 197-221 25-49 (199)
125 1odf_A YGR205W, hypothetical 3 96.1 0.0052 1.8E-07 58.1 5.2 30 194-223 28-57 (290)
126 1ly1_A Polynucleotide kinase; 96.1 0.0029 9.9E-08 55.0 3.3 22 198-219 3-24 (181)
127 3tlx_A Adenylate kinase 2; str 96.1 0.0038 1.3E-07 57.5 4.0 40 182-221 14-53 (243)
128 3lw7_A Adenylate kinase relate 96.1 0.0028 9.5E-08 54.7 2.9 22 198-220 2-23 (179)
129 3uie_A Adenylyl-sulfate kinase 96.0 0.0058 2E-07 54.3 4.8 27 196-222 24-50 (200)
130 2rhm_A Putative kinase; P-loop 96.0 0.0044 1.5E-07 54.5 4.0 25 197-221 5-29 (193)
131 3upu_A ATP-dependent DNA helic 95.9 0.024 8.1E-07 57.4 9.6 29 198-226 46-74 (459)
132 1zuh_A Shikimate kinase; alpha 95.9 0.0042 1.4E-07 53.4 3.2 26 197-222 7-32 (168)
133 3iij_A Coilin-interacting nucl 95.9 0.0034 1.2E-07 54.7 2.6 25 197-221 11-35 (180)
134 1kag_A SKI, shikimate kinase I 95.9 0.0032 1.1E-07 54.3 2.5 25 198-222 5-29 (173)
135 1kht_A Adenylate kinase; phosp 95.9 0.0041 1.4E-07 54.6 3.1 26 198-223 4-29 (192)
136 2yvu_A Probable adenylyl-sulfa 95.9 0.008 2.7E-07 52.6 5.0 28 196-223 12-39 (186)
137 4a1f_A DNAB helicase, replicat 95.8 0.017 5.9E-07 55.6 7.6 70 177-253 27-96 (338)
138 1gvn_B Zeta; postsegregational 95.8 0.0075 2.6E-07 57.0 5.0 26 196-221 32-57 (287)
139 1zp6_A Hypothetical protein AT 95.8 0.0044 1.5E-07 54.5 3.2 25 196-220 8-32 (191)
140 3t61_A Gluconokinase; PSI-biol 95.8 0.0034 1.2E-07 55.9 2.4 25 197-221 18-42 (202)
141 2vli_A Antibiotic resistance p 95.8 0.0039 1.3E-07 54.4 2.8 26 197-222 5-30 (183)
142 1knq_A Gluconate kinase; ALFA/ 95.8 0.0063 2.1E-07 52.7 3.9 25 197-221 8-32 (175)
143 2ze6_A Isopentenyl transferase 95.8 0.0051 1.7E-07 57.0 3.5 24 198-221 2-25 (253)
144 1ukz_A Uridylate kinase; trans 95.8 0.0062 2.1E-07 54.2 3.8 26 196-221 14-39 (203)
145 3tau_A Guanylate kinase, GMP k 95.7 0.0046 1.6E-07 55.4 2.9 27 196-222 7-33 (208)
146 2plr_A DTMP kinase, probable t 95.7 0.0093 3.2E-07 53.2 5.0 27 198-224 5-31 (213)
147 1tev_A UMP-CMP kinase; ploop, 95.7 0.0054 1.9E-07 53.9 3.4 25 197-221 3-27 (196)
148 2c95_A Adenylate kinase 1; tra 95.7 0.0052 1.8E-07 54.2 3.2 25 197-221 9-33 (196)
149 2iyv_A Shikimate kinase, SK; t 95.7 0.004 1.4E-07 54.4 2.4 24 198-221 3-26 (184)
150 1kgd_A CASK, peripheral plasma 95.7 0.0055 1.9E-07 53.5 3.2 26 197-222 5-30 (180)
151 1uj2_A Uridine-cytidine kinase 95.7 0.0058 2E-07 56.6 3.5 28 195-222 20-47 (252)
152 1nn5_A Similar to deoxythymidy 95.7 0.0075 2.5E-07 54.0 4.2 28 197-224 9-36 (215)
153 1xjc_A MOBB protein homolog; s 95.7 0.0085 2.9E-07 51.5 4.3 29 196-224 3-31 (169)
154 1via_A Shikimate kinase; struc 95.7 0.0049 1.7E-07 53.4 2.8 24 199-222 6-29 (175)
155 1y63_A LMAJ004144AAA protein; 95.6 0.0068 2.3E-07 53.0 3.6 25 196-220 9-33 (184)
156 3cm0_A Adenylate kinase; ATP-b 95.6 0.0065 2.2E-07 53.1 3.4 25 197-221 4-28 (186)
157 4eun_A Thermoresistant glucoki 95.6 0.0059 2E-07 54.3 3.2 26 196-221 28-53 (200)
158 3cmu_A Protein RECA, recombina 95.6 0.036 1.2E-06 65.0 10.4 48 185-232 1414-1462(2050)
159 2qor_A Guanylate kinase; phosp 95.6 0.0048 1.6E-07 55.1 2.6 27 196-222 11-37 (204)
160 2bwj_A Adenylate kinase 5; pho 95.6 0.0056 1.9E-07 54.1 3.0 25 197-221 12-36 (199)
161 2dr3_A UPF0273 protein PH0284; 95.6 0.0091 3.1E-07 54.7 4.6 37 196-232 22-58 (247)
162 1e6c_A Shikimate kinase; phosp 95.6 0.0048 1.6E-07 53.2 2.5 24 198-221 3-26 (173)
163 2jaq_A Deoxyguanosine kinase; 95.6 0.0058 2E-07 54.2 3.0 24 199-222 2-25 (205)
164 2cdn_A Adenylate kinase; phosp 95.6 0.0078 2.7E-07 53.4 3.8 25 197-221 20-44 (201)
165 1aky_A Adenylate kinase; ATP:A 95.6 0.0063 2.1E-07 55.0 3.2 25 197-221 4-28 (220)
166 2ewv_A Twitching motility prot 95.5 0.03 1E-06 54.9 8.2 110 196-312 135-245 (372)
167 1zu4_A FTSY; GTPase, signal re 95.5 0.019 6.6E-07 55.0 6.7 29 196-224 104-132 (320)
168 3a00_A Guanylate kinase, GMP k 95.5 0.0061 2.1E-07 53.5 2.9 28 198-225 2-29 (186)
169 1qf9_A UMP/CMP kinase, protein 95.5 0.0072 2.5E-07 53.0 3.3 25 197-221 6-30 (194)
170 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0081 2.8E-07 57.9 3.8 31 195-225 22-52 (359)
171 2pt5_A Shikimate kinase, SK; a 95.5 0.0077 2.6E-07 51.6 3.2 24 199-222 2-25 (168)
172 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0078 2.7E-07 56.0 3.5 26 197-222 4-29 (260)
173 3p32_A Probable GTPase RV1496/ 95.4 0.019 6.4E-07 56.1 6.3 42 183-224 65-106 (355)
174 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.012 4.2E-07 53.2 4.7 48 185-232 11-58 (235)
175 2z0h_A DTMP kinase, thymidylat 95.4 0.018 6E-07 50.7 5.6 25 199-223 2-26 (197)
176 2wwf_A Thymidilate kinase, put 95.4 0.01 3.6E-07 53.0 4.1 27 197-223 10-36 (212)
177 2q6t_A DNAB replication FORK h 95.4 0.036 1.2E-06 55.8 8.5 69 178-253 182-251 (444)
178 3hyn_A Putative signal transdu 95.4 0.048 1.6E-06 46.5 7.7 81 9-94 27-116 (189)
179 3ney_A 55 kDa erythrocyte memb 95.4 0.0086 2.9E-07 52.9 3.3 27 196-222 18-44 (197)
180 1n0w_A DNA repair protein RAD5 95.4 0.017 5.7E-07 52.8 5.4 49 184-232 11-65 (243)
181 1uf9_A TT1252 protein; P-loop, 95.4 0.0088 3E-07 53.0 3.4 26 195-220 6-31 (203)
182 2pbr_A DTMP kinase, thymidylat 95.4 0.0081 2.8E-07 52.8 3.1 24 199-222 2-25 (195)
183 1g41_A Heat shock protein HSLU 95.4 0.0099 3.4E-07 59.4 4.0 50 174-223 15-76 (444)
184 3umf_A Adenylate kinase; rossm 95.3 0.0099 3.4E-07 53.5 3.6 27 195-221 27-53 (217)
185 2p5t_B PEZT; postsegregational 95.3 0.011 3.6E-07 54.8 3.9 27 196-222 31-57 (253)
186 3fwy_A Light-independent proto 95.3 0.013 4.5E-07 56.0 4.7 37 195-231 46-82 (314)
187 3tr0_A Guanylate kinase, GMP k 95.3 0.0087 3E-07 53.1 3.2 25 197-221 7-31 (205)
188 3e1s_A Exodeoxyribonuclease V, 95.3 0.057 1.9E-06 56.2 9.8 28 197-224 204-231 (574)
189 4a74_A DNA repair and recombin 95.3 0.02 6.9E-07 51.7 5.7 37 185-221 13-49 (231)
190 1u94_A RECA protein, recombina 95.3 0.014 4.9E-07 56.8 4.9 51 182-232 47-98 (356)
191 2j41_A Guanylate kinase; GMP, 95.3 0.0091 3.1E-07 53.1 3.2 25 197-221 6-30 (207)
192 2qt1_A Nicotinamide riboside k 95.3 0.0095 3.3E-07 53.1 3.3 26 196-221 20-45 (207)
193 1cke_A CK, MSSA, protein (cyti 95.3 0.0089 3E-07 54.1 3.1 24 198-221 6-29 (227)
194 3bgw_A DNAB-like replicative h 95.3 0.051 1.7E-06 54.6 8.9 54 178-232 179-232 (444)
195 3fb4_A Adenylate kinase; psych 95.3 0.0091 3.1E-07 53.6 3.1 23 199-221 2-24 (216)
196 1u0j_A DNA replication protein 95.3 0.016 5.5E-07 53.6 4.8 39 183-221 90-128 (267)
197 2bdt_A BH3686; alpha-beta prot 95.3 0.0097 3.3E-07 52.2 3.2 22 198-219 3-24 (189)
198 1zd8_A GTP:AMP phosphotransfer 95.2 0.009 3.1E-07 54.2 3.0 25 197-221 7-31 (227)
199 1ny5_A Transcriptional regulat 95.2 0.27 9.1E-06 48.4 13.8 47 174-220 137-183 (387)
200 3dl0_A Adenylate kinase; phosp 95.2 0.0099 3.4E-07 53.4 3.1 23 199-221 2-24 (216)
201 2pez_A Bifunctional 3'-phospho 95.2 0.012 4E-07 51.2 3.5 26 197-222 5-30 (179)
202 3asz_A Uridine kinase; cytidin 95.2 0.011 3.6E-07 53.0 3.3 27 196-222 5-31 (211)
203 1gtv_A TMK, thymidylate kinase 95.2 0.0075 2.6E-07 54.0 2.3 24 199-222 2-25 (214)
204 1sky_E F1-ATPase, F1-ATP synth 95.2 0.029 9.8E-07 56.2 6.6 29 198-226 152-180 (473)
205 2v54_A DTMP kinase, thymidylat 95.1 0.01 3.5E-07 52.6 3.1 25 197-221 4-28 (204)
206 1zak_A Adenylate kinase; ATP:A 95.1 0.0087 3E-07 54.1 2.6 26 197-222 5-30 (222)
207 2if2_A Dephospho-COA kinase; a 95.1 0.0098 3.4E-07 52.9 2.9 21 199-219 3-23 (204)
208 3ice_A Transcription terminati 95.1 0.0082 2.8E-07 58.3 2.5 29 196-224 173-201 (422)
209 2zts_A Putative uncharacterize 95.1 0.015 5E-07 53.4 4.1 37 196-232 29-66 (251)
210 3tqc_A Pantothenate kinase; bi 95.1 0.014 4.6E-07 55.9 3.9 47 176-222 69-117 (321)
211 2z43_A DNA repair and recombin 95.0 0.037 1.3E-06 53.1 7.0 49 184-232 94-148 (324)
212 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.4E-07 51.7 3.3 26 196-221 11-36 (192)
213 1jjv_A Dephospho-COA kinase; P 95.0 0.011 3.8E-07 52.6 3.0 22 198-219 3-24 (206)
214 2bbw_A Adenylate kinase 4, AK4 95.0 0.011 3.9E-07 54.3 3.1 25 197-221 27-51 (246)
215 2j9r_A Thymidine kinase; TK1, 95.0 0.031 1.1E-06 49.8 5.8 110 196-311 27-138 (214)
216 3be4_A Adenylate kinase; malar 95.0 0.011 3.6E-07 53.3 2.8 24 198-221 6-29 (217)
217 3k1j_A LON protease, ATP-depen 95.0 0.017 5.8E-07 60.7 4.6 48 173-224 40-87 (604)
218 3e70_C DPA, signal recognition 95.0 0.029 9.9E-07 53.9 5.8 30 195-224 127-156 (328)
219 1m7g_A Adenylylsulfate kinase; 94.9 0.016 5.3E-07 51.9 3.7 27 196-222 24-50 (211)
220 3kl4_A SRP54, signal recogniti 94.9 0.029 9.9E-07 55.9 5.9 29 196-224 96-124 (433)
221 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.029 1E-06 54.0 5.7 104 198-311 172-275 (330)
222 4gp7_A Metallophosphoesterase; 94.9 0.012 4.2E-07 50.7 2.7 22 196-217 8-29 (171)
223 1rj9_A FTSY, signal recognitio 94.9 0.023 7.8E-07 54.0 4.8 36 196-232 101-136 (304)
224 1lvg_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 52.4 2.4 24 198-221 5-28 (198)
225 2r6a_A DNAB helicase, replicat 94.8 0.047 1.6E-06 55.1 7.3 49 183-232 190-239 (454)
226 1a7j_A Phosphoribulokinase; tr 94.8 0.011 3.7E-07 55.9 2.4 27 196-222 4-30 (290)
227 4e22_A Cytidylate kinase; P-lo 94.7 0.016 5.6E-07 53.5 3.4 25 197-221 27-51 (252)
228 2f6r_A COA synthase, bifunctio 94.7 0.017 5.7E-07 54.4 3.4 24 196-219 74-97 (281)
229 3a8t_A Adenylate isopentenyltr 94.7 0.015 5.2E-07 55.7 3.1 26 197-222 40-65 (339)
230 3d3q_A TRNA delta(2)-isopenten 94.7 0.017 5.7E-07 55.6 3.4 25 198-222 8-32 (340)
231 2r8r_A Sensor protein; KDPD, P 94.7 0.032 1.1E-06 50.2 4.9 34 198-231 7-40 (228)
232 1j8m_F SRP54, signal recogniti 94.7 0.042 1.4E-06 52.0 6.1 35 197-231 98-132 (297)
233 1vma_A Cell division protein F 94.7 0.027 9.4E-07 53.5 4.8 29 196-224 103-131 (306)
234 1ak2_A Adenylate kinase isoenz 94.7 0.017 6E-07 52.5 3.3 26 197-222 16-41 (233)
235 2qmh_A HPR kinase/phosphorylas 94.7 0.018 6.2E-07 50.6 3.2 25 197-221 34-58 (205)
236 2xb4_A Adenylate kinase; ATP-b 94.6 0.017 5.7E-07 52.3 3.1 23 199-221 2-24 (223)
237 3ake_A Cytidylate kinase; CMP 94.6 0.018 6.1E-07 51.2 3.3 24 199-222 4-27 (208)
238 1e4v_A Adenylate kinase; trans 94.6 0.017 5.7E-07 51.9 3.1 23 199-221 2-24 (214)
239 2jeo_A Uridine-cytidine kinase 94.6 0.019 6.6E-07 52.7 3.5 26 196-221 24-49 (245)
240 2wsm_A Hydrogenase expression/ 94.6 0.027 9.1E-07 50.6 4.4 41 182-224 17-57 (221)
241 3crm_A TRNA delta(2)-isopenten 94.6 0.018 6.1E-07 55.0 3.3 24 198-221 6-29 (323)
242 2ehv_A Hypothetical protein PH 94.6 0.018 6.2E-07 52.8 3.3 37 196-232 29-66 (251)
243 3nwj_A ATSK2; P loop, shikimat 94.5 0.014 4.9E-07 53.7 2.4 25 198-222 49-73 (250)
244 1vht_A Dephospho-COA kinase; s 94.5 0.021 7.1E-07 51.4 3.5 23 197-219 4-26 (218)
245 1t9h_A YLOQ, probable GTPase E 94.5 0.039 1.3E-06 52.4 5.4 46 51-98 83-128 (307)
246 3r20_A Cytidylate kinase; stru 94.5 0.019 6.4E-07 52.2 3.1 25 197-221 9-33 (233)
247 2ck3_D ATP synthase subunit be 94.5 0.098 3.3E-06 52.3 8.5 54 197-253 153-207 (482)
248 3exa_A TRNA delta(2)-isopenten 94.5 0.019 6.6E-07 54.3 3.3 25 197-221 3-27 (322)
249 3foz_A TRNA delta(2)-isopenten 94.5 0.023 7.8E-07 53.7 3.7 26 196-221 9-34 (316)
250 2hf9_A Probable hydrogenase ni 94.5 0.046 1.6E-06 49.2 5.7 40 183-224 26-65 (226)
251 2xxa_A Signal recognition part 94.5 0.049 1.7E-06 54.5 6.3 29 196-224 99-127 (433)
252 3cmw_A Protein RECA, recombina 94.5 0.067 2.3E-06 62.0 8.1 52 181-232 715-767 (1706)
253 1puj_A YLQF, conserved hypothe 94.5 0.36 1.2E-05 45.2 11.9 36 44-80 13-48 (282)
254 3aez_A Pantothenate kinase; tr 94.5 0.02 7E-07 54.6 3.3 28 195-222 88-115 (312)
255 1np6_A Molybdopterin-guanine d 94.4 0.032 1.1E-06 48.2 4.3 27 197-223 6-32 (174)
256 1s96_A Guanylate kinase, GMP k 94.4 0.02 6.7E-07 51.7 3.0 27 196-222 15-41 (219)
257 4eaq_A DTMP kinase, thymidylat 94.4 0.046 1.6E-06 49.6 5.4 28 196-223 25-52 (229)
258 4edh_A DTMP kinase, thymidylat 94.4 0.064 2.2E-06 48.0 6.3 28 197-224 6-33 (213)
259 3sr0_A Adenylate kinase; phosp 94.4 0.022 7.6E-07 50.8 3.1 23 199-221 2-24 (206)
260 3dm5_A SRP54, signal recogniti 94.3 0.041 1.4E-06 54.9 5.3 29 196-224 99-127 (443)
261 1htw_A HI0065; nucleotide-bind 94.3 0.04 1.4E-06 46.8 4.6 27 195-221 31-57 (158)
262 1znw_A Guanylate kinase, GMP k 94.3 0.021 7.2E-07 50.9 3.0 25 197-221 20-44 (207)
263 1pzn_A RAD51, DNA repair and r 94.3 0.046 1.6E-06 53.1 5.6 37 185-221 119-155 (349)
264 1z6g_A Guanylate kinase; struc 94.3 0.017 5.9E-07 52.0 2.4 25 197-221 23-47 (218)
265 2rcn_A Probable GTPase ENGC; Y 94.3 0.15 5.1E-06 49.4 9.1 24 198-221 216-239 (358)
266 3b9q_A Chloroplast SRP recepto 94.2 0.036 1.2E-06 52.6 4.6 28 196-223 99-126 (302)
267 2px0_A Flagellar biosynthesis 94.2 0.036 1.2E-06 52.5 4.5 28 196-223 104-131 (296)
268 2i1q_A DNA repair and recombin 94.2 0.078 2.7E-06 50.8 7.0 38 184-221 85-122 (322)
269 3hjn_A DTMP kinase, thymidylat 94.2 0.057 2E-06 47.7 5.5 34 199-232 2-35 (197)
270 1ltq_A Polynucleotide kinase; 94.2 0.024 8.3E-07 53.7 3.3 23 198-220 3-25 (301)
271 1svm_A Large T antigen; AAA+ f 94.2 0.035 1.2E-06 54.4 4.4 29 193-221 165-193 (377)
272 3zvl_A Bifunctional polynucleo 94.1 0.023 8E-07 56.7 3.1 26 196-221 257-282 (416)
273 2f1r_A Molybdopterin-guanine d 94.1 0.021 7.3E-07 49.2 2.5 26 198-223 3-28 (171)
274 3cmu_A Protein RECA, recombina 94.1 0.11 3.7E-06 61.1 8.9 57 176-232 361-418 (2050)
275 1q57_A DNA primase/helicase; d 94.1 0.23 8E-06 50.7 10.6 53 195-253 240-293 (503)
276 1yrb_A ATP(GTP)binding protein 94.1 0.048 1.6E-06 50.4 5.0 27 196-222 13-39 (262)
277 1cr0_A DNA primase/helicase; R 94.1 0.039 1.3E-06 52.2 4.4 37 196-232 34-71 (296)
278 3zq6_A Putative arsenical pump 94.1 0.053 1.8E-06 52.1 5.4 36 197-232 14-49 (324)
279 3lnc_A Guanylate kinase, GMP k 94.0 0.019 6.3E-07 52.2 2.0 25 197-221 27-52 (231)
280 3ug7_A Arsenical pump-driving 94.0 0.071 2.4E-06 51.7 6.3 39 194-232 23-61 (349)
281 1fx0_B ATP synthase beta chain 94.0 0.087 3E-06 52.9 6.8 53 197-252 165-218 (498)
282 1g8f_A Sulfate adenylyltransfe 94.0 0.04 1.4E-06 56.1 4.5 47 177-223 375-421 (511)
283 1cp2_A CP2, nitrogenase iron p 94.0 0.047 1.6E-06 50.7 4.7 34 198-231 2-35 (269)
284 3end_A Light-independent proto 93.9 0.045 1.6E-06 52.0 4.7 37 195-231 39-75 (307)
285 4hlc_A DTMP kinase, thymidylat 93.9 0.17 5.8E-06 44.9 8.1 29 198-226 3-31 (205)
286 1sq5_A Pantothenate kinase; P- 93.9 0.033 1.1E-06 53.1 3.5 28 195-222 78-105 (308)
287 2j37_W Signal recognition part 93.9 0.067 2.3E-06 54.5 5.9 29 196-224 100-128 (504)
288 3cmw_A Protein RECA, recombina 93.8 0.11 3.8E-06 60.2 8.1 54 179-232 364-418 (1706)
289 2og2_A Putative signal recogni 93.8 0.05 1.7E-06 52.9 4.6 28 196-223 156-183 (359)
290 2afh_E Nitrogenase iron protei 93.7 0.051 1.7E-06 51.2 4.6 35 197-231 2-36 (289)
291 1q3t_A Cytidylate kinase; nucl 93.7 0.037 1.2E-06 50.5 3.4 26 196-221 15-40 (236)
292 3kjh_A CO dehydrogenase/acetyl 93.7 0.06 2.1E-06 49.2 4.9 32 200-231 3-34 (254)
293 2ocp_A DGK, deoxyguanosine kin 93.7 0.037 1.3E-06 50.6 3.4 26 197-222 2-27 (241)
294 3lda_A DNA repair protein RAD5 93.7 0.066 2.2E-06 52.9 5.3 37 183-219 164-200 (400)
295 2v3c_C SRP54, signal recogniti 93.7 0.031 1.1E-06 55.9 3.0 29 196-224 98-126 (432)
296 2p67_A LAO/AO transport system 93.7 0.084 2.9E-06 51.1 6.0 29 194-222 53-81 (341)
297 3io3_A DEHA2D07832P; chaperone 93.7 0.07 2.4E-06 51.7 5.4 38 195-232 16-55 (348)
298 2i3b_A HCR-ntpase, human cance 93.7 0.029 1E-06 49.2 2.5 23 199-221 3-25 (189)
299 3v9p_A DTMP kinase, thymidylat 93.6 0.072 2.5E-06 48.1 5.1 28 197-224 25-52 (227)
300 1nlf_A Regulatory protein REPA 93.6 0.053 1.8E-06 50.8 4.4 27 196-222 29-55 (279)
301 3ld9_A DTMP kinase, thymidylat 93.6 0.078 2.7E-06 47.8 5.3 28 196-223 20-47 (223)
302 3lv8_A DTMP kinase, thymidylat 93.6 0.082 2.8E-06 48.1 5.4 35 197-231 27-62 (236)
303 3iqw_A Tail-anchored protein t 93.6 0.077 2.6E-06 51.1 5.5 37 196-232 15-51 (334)
304 3eph_A TRNA isopentenyltransfe 93.6 0.039 1.3E-06 54.1 3.4 25 198-222 3-27 (409)
305 1ls1_A Signal recognition part 93.5 0.062 2.1E-06 50.8 4.8 29 196-224 97-125 (295)
306 1yqt_A RNAse L inhibitor; ATP- 93.5 0.17 5.8E-06 52.1 8.4 25 197-221 312-336 (538)
307 4tmk_A Protein (thymidylate ki 93.4 0.096 3.3E-06 46.9 5.6 27 198-224 4-30 (213)
308 2yhs_A FTSY, cell division pro 93.4 0.059 2E-06 54.4 4.5 36 196-232 292-327 (503)
309 1ypw_A Transitional endoplasmi 93.4 0.047 1.6E-06 59.3 4.1 151 173-341 476-661 (806)
310 2qm8_A GTPase/ATPase; G protei 93.4 0.095 3.2E-06 50.6 5.9 28 195-222 53-80 (337)
311 2axn_A 6-phosphofructo-2-kinas 93.4 0.063 2.1E-06 55.1 4.8 30 196-225 34-63 (520)
312 3tqf_A HPR(Ser) kinase; transf 93.3 0.049 1.7E-06 46.6 3.2 24 197-220 16-39 (181)
313 3b85_A Phosphate starvation-in 93.3 0.038 1.3E-06 49.3 2.7 23 198-220 23-45 (208)
314 1w36_D RECD, exodeoxyribonucle 93.3 0.13 4.5E-06 53.9 7.2 37 181-222 153-189 (608)
315 2v9p_A Replication protein E1; 93.3 0.066 2.3E-06 50.7 4.4 27 195-221 124-150 (305)
316 3b5x_A Lipid A export ATP-bind 93.3 0.27 9.3E-06 51.2 9.5 25 196-220 368-392 (582)
317 3cnl_A YLQF, putative uncharac 93.2 0.2 6.9E-06 46.3 7.6 23 198-220 100-122 (262)
318 3cr8_A Sulfate adenylyltranfer 93.2 0.063 2.2E-06 55.4 4.5 28 196-223 368-395 (552)
319 3tif_A Uncharacterized ABC tra 93.1 0.04 1.4E-06 50.2 2.6 25 196-220 30-54 (235)
320 2iut_A DNA translocase FTSK; n 93.1 0.92 3.2E-05 46.6 12.9 63 274-338 344-420 (574)
321 2onk_A Molybdate/tungstate ABC 93.1 0.048 1.6E-06 49.9 3.0 25 195-220 23-47 (240)
322 2dyk_A GTP-binding protein; GT 92.9 0.059 2E-06 45.2 3.3 23 198-220 2-24 (161)
323 2gks_A Bifunctional SAT/APS ki 92.9 0.099 3.4E-06 53.9 5.4 47 177-223 352-398 (546)
324 2pcj_A ABC transporter, lipopr 92.9 0.041 1.4E-06 49.7 2.3 24 197-220 30-53 (224)
325 2cbz_A Multidrug resistance-as 92.9 0.046 1.6E-06 49.9 2.6 26 196-221 30-55 (237)
326 1oix_A RAS-related protein RAB 92.9 0.053 1.8E-06 47.4 2.9 24 197-220 29-52 (191)
327 4dzz_A Plasmid partitioning pr 92.8 0.097 3.3E-06 46.2 4.7 35 198-232 2-37 (206)
328 2ged_A SR-beta, signal recogni 92.8 0.085 2.9E-06 45.9 4.2 25 196-220 47-71 (193)
329 2fz4_A DNA repair protein RAD2 92.8 0.64 2.2E-05 42.1 10.3 40 177-221 93-132 (237)
330 3fdi_A Uncharacterized protein 92.8 0.059 2E-06 47.8 3.2 26 197-222 6-31 (201)
331 3vkw_A Replicase large subunit 92.8 0.14 4.6E-06 51.0 6.0 25 195-219 159-183 (446)
332 1u0l_A Probable GTPase ENGC; p 92.8 0.64 2.2E-05 43.8 10.6 34 183-221 160-193 (301)
333 2wji_A Ferrous iron transport 92.7 0.061 2.1E-06 45.7 3.1 22 198-219 4-25 (165)
334 1m8p_A Sulfate adenylyltransfe 92.7 0.091 3.1E-06 54.5 4.9 27 196-222 395-421 (573)
335 3gmt_A Adenylate kinase; ssgci 92.7 0.057 1.9E-06 48.8 2.9 24 198-221 9-32 (230)
336 1p5z_B DCK, deoxycytidine kina 92.7 0.034 1.2E-06 51.6 1.5 27 196-222 23-49 (263)
337 2f9l_A RAB11B, member RAS onco 92.7 0.055 1.9E-06 47.6 2.8 23 198-220 6-28 (199)
338 1mv5_A LMRA, multidrug resista 92.6 0.057 1.9E-06 49.5 2.8 24 196-219 27-50 (243)
339 1b0u_A Histidine permease; ABC 92.6 0.053 1.8E-06 50.3 2.6 25 196-220 31-55 (262)
340 2h92_A Cytidylate kinase; ross 92.6 0.053 1.8E-06 48.6 2.6 24 198-221 4-27 (219)
341 2zej_A Dardarin, leucine-rich 92.5 0.048 1.6E-06 47.3 2.1 21 199-219 4-24 (184)
342 2qi9_C Vitamin B12 import ATP- 92.5 0.066 2.3E-06 49.2 3.2 26 197-222 26-51 (249)
343 2d2e_A SUFC protein; ABC-ATPas 92.5 0.061 2.1E-06 49.5 2.9 24 197-220 29-52 (250)
344 3gfo_A Cobalt import ATP-bindi 92.5 0.051 1.7E-06 50.8 2.4 24 197-220 34-57 (275)
345 2ffh_A Protein (FFH); SRP54, s 92.5 0.11 3.9E-06 51.5 5.0 29 196-224 97-125 (425)
346 2woo_A ATPase GET3; tail-ancho 92.4 0.14 4.7E-06 49.3 5.5 37 196-232 18-54 (329)
347 2zu0_C Probable ATP-dependent 92.4 0.067 2.3E-06 49.8 3.1 25 196-220 45-69 (267)
348 3f9v_A Minichromosome maintena 92.4 0.035 1.2E-06 58.1 1.2 50 172-221 293-351 (595)
349 2olj_A Amino acid ABC transpor 92.4 0.058 2E-06 50.0 2.6 25 196-220 49-73 (263)
350 1mky_A Probable GTP-binding pr 92.4 1 3.5E-05 45.0 12.0 25 196-220 179-203 (439)
351 2www_A Methylmalonic aciduria 92.3 0.11 3.9E-06 50.3 4.8 27 196-222 73-99 (349)
352 1ji0_A ABC transporter; ATP bi 92.3 0.055 1.9E-06 49.4 2.4 25 196-220 31-55 (240)
353 4b3f_X DNA-binding protein smu 92.3 0.12 4.1E-06 54.7 5.3 47 181-232 193-239 (646)
354 2ce2_X GTPase HRAS; signaling 92.3 0.066 2.3E-06 45.0 2.7 22 199-220 5-26 (166)
355 2vp4_A Deoxynucleoside kinase; 92.3 0.054 1.8E-06 49.1 2.2 25 196-220 19-43 (230)
356 4g1u_C Hemin import ATP-bindin 92.3 0.055 1.9E-06 50.3 2.3 25 196-220 36-60 (266)
357 2ghi_A Transport protein; mult 92.3 0.061 2.1E-06 49.8 2.6 26 196-221 45-70 (260)
358 1g6h_A High-affinity branched- 92.2 0.057 2E-06 49.9 2.4 25 196-220 32-56 (257)
359 3vr4_D V-type sodium ATPase su 92.2 0.24 8.2E-06 49.2 6.9 83 198-283 152-258 (465)
360 1bif_A 6-phosphofructo-2-kinas 92.2 0.11 3.7E-06 52.7 4.7 29 197-225 39-67 (469)
361 1tq4_A IIGP1, interferon-induc 92.2 0.059 2E-06 53.4 2.6 25 195-219 67-91 (413)
362 2pze_A Cystic fibrosis transme 92.2 0.059 2E-06 48.9 2.4 26 196-221 33-58 (229)
363 1sgw_A Putative ABC transporte 92.2 0.049 1.7E-06 48.8 1.8 24 197-220 35-58 (214)
364 2ff7_A Alpha-hemolysin translo 92.2 0.059 2E-06 49.5 2.4 25 196-220 34-58 (247)
365 1vpl_A ABC transporter, ATP-bi 92.2 0.063 2.2E-06 49.6 2.6 25 196-220 40-64 (256)
366 2woj_A ATPase GET3; tail-ancho 92.2 0.2 6.7E-06 48.7 6.2 37 196-232 17-55 (354)
367 2ixe_A Antigen peptide transpo 92.1 0.065 2.2E-06 50.0 2.6 25 196-220 44-68 (271)
368 2wjg_A FEOB, ferrous iron tran 92.1 0.084 2.9E-06 45.7 3.2 23 197-219 7-29 (188)
369 1z2a_A RAS-related protein RAB 92.0 0.093 3.2E-06 44.2 3.4 23 198-220 6-28 (168)
370 1fzq_A ADP-ribosylation factor 92.0 0.11 3.8E-06 44.8 3.9 25 196-220 15-39 (181)
371 1x6v_B Bifunctional 3'-phospho 92.0 0.094 3.2E-06 54.7 3.9 27 196-222 51-77 (630)
372 2yz2_A Putative ABC transporte 91.9 0.07 2.4E-06 49.6 2.6 25 196-220 32-56 (266)
373 3fkq_A NTRC-like two-domain pr 91.9 0.13 4.6E-06 50.3 4.7 38 195-232 141-179 (373)
374 4akg_A Glutathione S-transfera 91.9 0.66 2.3E-05 56.5 11.4 147 198-362 1268-1452(2695)
375 1kao_A RAP2A; GTP-binding prot 91.9 0.081 2.8E-06 44.5 2.8 21 199-219 5-25 (167)
376 2nzj_A GTP-binding protein REM 91.9 0.099 3.4E-06 44.5 3.3 22 198-219 5-26 (175)
377 1ihu_A Arsenical pump-driving 91.8 0.14 4.9E-06 53.4 5.2 37 195-231 6-42 (589)
378 1nrj_B SR-beta, signal recogni 91.8 0.093 3.2E-06 46.8 3.2 25 196-220 11-35 (218)
379 2lkc_A Translation initiation 91.8 0.099 3.4E-06 44.7 3.3 24 196-219 7-30 (178)
380 3ch4_B Pmkase, phosphomevalona 91.8 0.12 4E-06 45.6 3.7 27 195-221 9-35 (202)
381 2nq2_C Hypothetical ABC transp 91.8 0.07 2.4E-06 49.2 2.4 25 197-221 31-55 (253)
382 3con_A GTPase NRAS; structural 91.8 0.082 2.8E-06 45.9 2.8 23 198-220 22-44 (190)
383 1svi_A GTP-binding protein YSX 91.8 0.099 3.4E-06 45.5 3.3 25 196-220 22-46 (195)
384 3sop_A Neuronal-specific septi 91.7 0.082 2.8E-06 49.2 2.8 23 199-221 4-26 (270)
385 2ihy_A ABC transporter, ATP-bi 91.7 0.071 2.4E-06 49.9 2.4 25 196-220 46-70 (279)
386 2gj8_A MNME, tRNA modification 91.7 0.079 2.7E-06 45.4 2.5 23 198-220 5-27 (172)
387 1c1y_A RAS-related protein RAP 91.7 0.088 3E-06 44.4 2.8 21 199-219 5-25 (167)
388 1z08_A RAS-related protein RAB 91.7 0.086 3E-06 44.6 2.7 24 197-220 6-29 (170)
389 2erx_A GTP-binding protein DI- 91.7 0.083 2.8E-06 44.7 2.6 22 198-219 4-25 (172)
390 3q85_A GTP-binding protein REM 91.7 0.084 2.9E-06 44.7 2.7 21 199-219 4-24 (169)
391 1nij_A Hypothetical protein YJ 91.6 0.088 3E-06 50.4 3.0 26 196-221 3-28 (318)
392 1ek0_A Protein (GTP-binding pr 91.6 0.09 3.1E-06 44.4 2.8 22 199-220 5-26 (170)
393 3hdt_A Putative kinase; struct 91.6 0.11 3.7E-06 46.8 3.4 26 197-222 14-39 (223)
394 3nh6_A ATP-binding cassette SU 91.6 0.077 2.6E-06 50.4 2.5 25 196-220 79-103 (306)
395 1z0j_A RAB-22, RAS-related pro 91.6 0.091 3.1E-06 44.4 2.8 23 198-220 7-29 (170)
396 1m7b_A RND3/RHOE small GTP-bin 91.6 0.088 3E-06 45.5 2.7 24 197-220 7-30 (184)
397 3ea0_A ATPase, para family; al 91.5 0.19 6.5E-06 45.7 5.1 35 197-231 4-40 (245)
398 2iwr_A Centaurin gamma 1; ANK 91.5 0.089 3.1E-06 45.0 2.7 23 198-220 8-30 (178)
399 1r8s_A ADP-ribosylation factor 91.5 0.093 3.2E-06 44.1 2.8 21 200-220 3-23 (164)
400 1u8z_A RAS-related protein RAL 91.5 0.13 4.3E-06 43.3 3.6 23 198-220 5-27 (168)
401 3q72_A GTP-binding protein RAD 91.5 0.083 2.8E-06 44.6 2.4 21 199-219 4-24 (166)
402 1g16_A RAS-related protein SEC 91.5 0.092 3.2E-06 44.4 2.7 22 198-219 4-25 (170)
403 1ky3_A GTP-binding protein YPT 91.4 0.094 3.2E-06 44.9 2.8 25 196-220 7-31 (182)
404 2fn4_A P23, RAS-related protei 91.4 0.13 4.4E-06 44.0 3.7 25 196-220 8-32 (181)
405 1wms_A RAB-9, RAB9, RAS-relate 91.4 0.095 3.3E-06 44.7 2.8 23 197-219 7-29 (177)
406 3igf_A ALL4481 protein; two-do 91.4 0.15 5.3E-06 49.7 4.5 35 198-232 3-37 (374)
407 3t1o_A Gliding protein MGLA; G 91.4 0.1 3.5E-06 45.4 3.0 27 197-223 14-40 (198)
408 3ihw_A Centg3; RAS, centaurin, 91.4 0.096 3.3E-06 45.4 2.7 24 197-220 20-43 (184)
409 3kta_A Chromosome segregation 91.4 0.098 3.4E-06 45.2 2.8 23 199-221 28-50 (182)
410 3tmk_A Thymidylate kinase; pho 91.4 0.12 4.1E-06 46.3 3.4 27 197-223 5-31 (216)
411 3cio_A ETK, tyrosine-protein k 91.3 0.24 8.3E-06 46.8 5.7 38 195-232 102-140 (299)
412 2yv5_A YJEQ protein; hydrolase 91.3 0.14 5E-06 48.4 4.1 33 183-221 156-188 (302)
413 3thx_A DNA mismatch repair pro 91.3 0.33 1.1E-05 53.3 7.4 23 196-218 661-683 (934)
414 2orv_A Thymidine kinase; TP4A 91.3 0.21 7.3E-06 44.9 4.9 107 197-310 19-125 (234)
415 1p9r_A General secretion pathw 91.3 0.18 6.3E-06 50.0 5.0 88 196-290 166-253 (418)
416 3pqc_A Probable GTP-binding pr 91.3 0.12 4E-06 44.9 3.3 24 197-220 23-46 (195)
417 3bfv_A CAPA1, CAPB2, membrane 91.3 0.26 8.8E-06 45.9 5.8 38 195-232 80-118 (271)
418 2gk6_A Regulator of nonsense t 91.3 0.2 6.7E-06 52.8 5.5 47 181-232 184-230 (624)
419 1r2q_A RAS-related protein RAB 91.3 0.1 3.5E-06 44.1 2.8 22 198-219 7-28 (170)
420 2hxs_A RAB-26, RAS-related pro 91.3 0.1 3.6E-06 44.5 2.9 23 197-219 6-28 (178)
421 2oze_A ORF delta'; para, walke 91.3 0.13 4.5E-06 48.5 3.8 46 183-231 23-71 (298)
422 3ez2_A Plasmid partition prote 91.2 0.33 1.1E-05 47.9 6.8 27 196-222 107-134 (398)
423 4gzl_A RAS-related C3 botulinu 91.2 0.12 4E-06 45.7 3.2 23 197-219 30-52 (204)
424 3c5c_A RAS-like protein 12; GD 91.2 0.1 3.6E-06 45.3 2.8 23 198-220 22-44 (187)
425 2pjz_A Hypothetical protein ST 91.1 0.089 3.1E-06 48.8 2.4 25 197-221 30-54 (263)
426 1c9k_A COBU, adenosylcobinamid 91.1 0.091 3.1E-06 45.5 2.2 29 200-232 2-30 (180)
427 1z0f_A RAB14, member RAS oncog 91.1 0.11 3.7E-06 44.4 2.8 24 197-220 15-38 (179)
428 1m2o_B GTP-binding protein SAR 91.1 0.1 3.6E-06 45.4 2.7 22 198-219 24-45 (190)
429 2cxx_A Probable GTP-binding pr 91.0 0.095 3.2E-06 45.4 2.4 22 199-220 3-24 (190)
430 1tf7_A KAIC; homohexamer, hexa 91.0 0.21 7E-06 51.4 5.2 48 185-232 269-316 (525)
431 3bc1_A RAS-related protein RAB 91.0 0.11 3.8E-06 45.0 2.8 23 197-219 11-33 (195)
432 1lw7_A Transcriptional regulat 91.0 0.12 4.2E-06 50.4 3.3 26 197-222 170-195 (365)
433 3fvq_A Fe(3+) IONS import ATP- 90.9 0.12 4E-06 50.2 3.0 24 196-219 29-52 (359)
434 1upt_A ARL1, ADP-ribosylation 90.9 0.15 5.2E-06 43.1 3.5 23 197-219 7-29 (171)
435 3def_A T7I23.11 protein; chlor 90.9 0.19 6.6E-06 46.4 4.5 25 196-220 35-59 (262)
436 2cjw_A GTP-binding protein GEM 90.9 0.11 3.8E-06 45.4 2.7 22 198-219 7-28 (192)
437 1h65_A Chloroplast outer envel 90.9 0.19 6.5E-06 46.6 4.5 26 195-220 37-62 (270)
438 3kkq_A RAS-related protein M-R 90.9 0.12 4E-06 44.5 2.8 24 197-220 18-41 (183)
439 2oil_A CATX-8, RAS-related pro 90.9 0.12 4E-06 45.1 2.8 23 197-219 25-47 (193)
440 4dsu_A GTPase KRAS, isoform 2B 90.8 0.12 4E-06 44.7 2.8 23 198-220 5-27 (189)
441 2bbs_A Cystic fibrosis transme 90.8 0.1 3.5E-06 49.1 2.5 26 196-221 63-88 (290)
442 2qe7_A ATP synthase subunit al 90.8 0.4 1.4E-05 48.2 6.9 83 197-283 162-264 (502)
443 2y8e_A RAB-protein 6, GH09086P 90.8 0.12 3.9E-06 44.2 2.7 22 198-219 15-36 (179)
444 1mh1_A RAC1; GTP-binding, GTPa 90.8 0.12 4.1E-06 44.5 2.8 22 198-219 6-27 (186)
445 2bme_A RAB4A, RAS-related prot 90.8 0.12 4E-06 44.6 2.7 24 197-220 10-33 (186)
446 2c61_A A-type ATP synthase non 90.7 0.48 1.6E-05 47.3 7.3 84 197-282 152-258 (469)
447 1wcv_1 SOJ, segregation protei 90.6 0.19 6.4E-06 46.3 4.1 36 196-231 5-41 (257)
448 2efe_B Small GTP-binding prote 90.6 0.12 4.3E-06 44.2 2.7 24 197-220 12-35 (181)
449 2a9k_A RAS-related protein RAL 90.6 0.13 4.3E-06 44.3 2.8 23 197-219 18-40 (187)
450 3bwd_D RAC-like GTP-binding pr 90.6 0.13 4.3E-06 44.2 2.8 23 198-220 9-31 (182)
451 3tw8_B RAS-related protein RAB 90.6 0.13 4.6E-06 43.9 2.9 24 196-219 8-31 (181)
452 3d31_A Sulfate/molybdate ABC t 90.6 0.13 4.3E-06 49.8 3.0 25 196-220 25-49 (348)
453 3tui_C Methionine import ATP-b 90.6 0.13 4.6E-06 49.8 3.1 24 196-219 53-76 (366)
454 2g6b_A RAS-related protein RAB 90.6 0.13 4.4E-06 44.0 2.8 24 197-220 10-33 (180)
455 3t5g_A GTP-binding protein RHE 90.6 0.12 4.3E-06 44.2 2.7 23 197-219 6-28 (181)
456 2atv_A RERG, RAS-like estrogen 90.5 0.13 4.4E-06 45.0 2.8 24 197-220 28-51 (196)
457 3clv_A RAB5 protein, putative; 90.5 0.13 4.4E-06 45.0 2.8 24 197-220 7-30 (208)
458 1z47_A CYSA, putative ABC-tran 90.5 0.13 4.3E-06 49.9 2.9 24 196-219 40-63 (355)
459 3cbq_A GTP-binding protein REM 90.5 0.098 3.3E-06 45.9 2.0 23 197-219 23-45 (195)
460 1oxx_K GLCV, glucose, ABC tran 90.5 0.12 4.1E-06 50.1 2.7 24 196-219 30-53 (353)
461 2yyz_A Sugar ABC transporter, 90.5 0.14 4.7E-06 49.7 3.1 24 196-219 28-51 (359)
462 2r9v_A ATP synthase subunit al 90.5 0.32 1.1E-05 49.0 5.8 83 197-283 175-277 (515)
463 3k9g_A PF-32 protein; ssgcid, 90.4 0.25 8.7E-06 45.6 4.8 36 196-232 26-62 (267)
464 1xx6_A Thymidine kinase; NESG, 90.4 0.25 8.7E-06 43.2 4.5 106 197-311 8-118 (191)
465 2it1_A 362AA long hypothetical 90.4 0.14 4.8E-06 49.7 3.1 24 196-219 28-51 (362)
466 3cwq_A Para family chromosome 90.4 0.29 1E-05 43.4 5.0 33 199-232 2-35 (209)
467 3iev_A GTP-binding protein ERA 90.4 0.14 4.9E-06 48.6 3.1 25 195-219 8-32 (308)
468 2ew1_A RAS-related protein RAB 90.4 0.13 4.5E-06 45.4 2.7 24 197-220 26-49 (201)
469 2bov_A RAla, RAS-related prote 90.3 0.14 4.6E-06 45.0 2.8 23 197-219 14-36 (206)
470 2hjg_A GTP-binding protein ENG 90.3 0.65 2.2E-05 46.4 8.1 25 196-220 174-198 (436)
471 1f6b_A SAR1; gtpases, N-termin 90.3 0.11 3.8E-06 45.6 2.2 22 198-219 26-47 (198)
472 1zd9_A ADP-ribosylation factor 90.3 0.14 4.7E-06 44.5 2.8 22 198-219 23-44 (188)
473 1gwn_A RHO-related GTP-binding 90.3 0.13 4.5E-06 45.5 2.7 24 197-220 28-51 (205)
474 3rlf_A Maltose/maltodextrin im 90.3 0.14 4.9E-06 49.9 3.1 24 196-219 28-51 (381)
475 2fg5_A RAB-22B, RAS-related pr 90.3 0.13 4.6E-06 44.7 2.7 24 197-220 23-46 (192)
476 3dz8_A RAS-related protein RAB 90.3 0.14 4.6E-06 44.6 2.7 23 198-220 24-46 (191)
477 3ec1_A YQEH GTPase; atnos1, at 90.3 0.94 3.2E-05 44.1 9.0 38 178-220 148-185 (369)
478 1vg8_A RAS-related protein RAB 90.2 0.17 5.8E-06 44.5 3.3 25 196-220 7-31 (207)
479 2gf9_A RAS-related protein RAB 90.2 0.14 4.9E-06 44.4 2.8 24 197-220 22-45 (189)
480 1pui_A ENGB, probable GTP-bind 90.2 0.092 3.1E-06 46.5 1.6 24 196-219 25-48 (210)
481 1zbd_A Rabphilin-3A; G protein 90.2 0.14 4.6E-06 45.0 2.6 24 197-220 8-31 (203)
482 3oes_A GTPase rhebl1; small GT 90.2 0.14 4.8E-06 45.0 2.7 24 197-220 24-47 (201)
483 3reg_A RHO-like small GTPase; 90.2 0.14 4.9E-06 44.5 2.8 24 197-220 23-46 (194)
484 2gza_A Type IV secretion syste 90.1 0.16 5.5E-06 49.4 3.4 35 197-232 175-209 (361)
485 2a5j_A RAS-related protein RAB 90.1 0.15 5E-06 44.4 2.8 23 197-219 21-43 (191)
486 1v43_A Sugar-binding transport 90.1 0.15 5.2E-06 49.7 3.1 24 196-219 36-59 (372)
487 2fh5_B SR-beta, signal recogni 90.1 0.14 5E-06 45.3 2.8 23 197-219 7-29 (214)
488 3la6_A Tyrosine-protein kinase 90.1 0.42 1.4E-05 44.8 6.0 38 195-232 90-128 (286)
489 2g3y_A GTP-binding protein GEM 90.0 0.14 4.9E-06 45.6 2.7 23 197-219 37-59 (211)
490 1z06_A RAS-related protein RAB 90.0 0.15 5.2E-06 44.2 2.8 23 197-219 20-42 (189)
491 1g29_1 MALK, maltose transport 90.0 0.15 5E-06 49.9 2.9 25 196-220 28-52 (372)
492 1byi_A Dethiobiotin synthase; 90.0 0.24 8.1E-06 44.4 4.2 34 198-231 2-36 (224)
493 3llu_A RAS-related GTP-binding 90.0 0.13 4.4E-06 45.0 2.3 24 197-220 20-43 (196)
494 3tkl_A RAS-related protein RAB 90.0 0.15 5.2E-06 44.3 2.8 24 197-220 16-39 (196)
495 4bas_A ADP-ribosylation factor 89.9 0.17 5.7E-06 44.2 3.0 24 196-219 16-39 (199)
496 3gqb_B V-type ATP synthase bet 89.9 0.42 1.5E-05 47.5 6.1 26 197-222 147-172 (464)
497 2p5s_A RAS and EF-hand domain 89.9 0.16 5.3E-06 44.6 2.8 23 197-219 28-50 (199)
498 2r2a_A Uncharacterized protein 89.9 0.17 5.7E-06 44.7 2.9 23 198-220 6-28 (199)
499 1x3s_A RAS-related protein RAB 89.9 0.16 5.4E-06 44.1 2.8 23 198-220 16-38 (195)
500 1ega_A Protein (GTP-binding pr 89.8 0.17 5.8E-06 47.9 3.1 24 197-220 8-31 (301)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-46 Score=325.12 Aligned_cols=166 Identities=41% Similarity=0.665 Sum_probs=141.3
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
+|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|++|++|+||++||.+|
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i 87 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTI 87 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHH
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHH
Confidence 599999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEeEEEEecCcccccccCCCchhhHHHHHHhcch-hhHHHHHHHHHHhhccCCCCccccchhhHHHHHHH
Q 043250 80 LECKHNYGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSELEKCYP-ENMQRWKNALTEAANLSGFDSHVIRSESKLIEEIA 158 (507)
Q Consensus 80 ~~~~~~~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~ 158 (507)
++|.+.+++.|+||||+|+|++||+|+ |+|+++|.+++++.. +.+++|+.||+++++++|+++. .+ |+++|++|+
T Consensus 88 ~~~~~~~~~~ViPIfy~V~ps~Vr~q~--g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~-~~-e~~~i~~Iv 163 (176)
T 3jrn_A 88 MDFEKKGSITVMPIFYGVEPNHVRWQT--GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG-DD-DSKLVDKIA 163 (176)
T ss_dssp HHHHHTTSCEEEEEECSSCHHHHHHTC--THHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC-SC-HHHHHHHHH
T ss_pred HhhhccCCCEEEEEEecCCHHHhhhcc--CcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC-CC-HHHHHHHHH
Confidence 999988999999999999999999999 999999999999844 4499999999999999999983 44 999999999
Q ss_pred Hhhhhccccccc
Q 043250 159 NDVLKRLDSTFQ 170 (507)
Q Consensus 159 ~~~~~~l~~~~~ 170 (507)
+++.+.+.++||
T Consensus 164 ~~v~~~l~~~~~ 175 (176)
T 3jrn_A 164 NEISNKKTIYAT 175 (176)
T ss_dssp HHHHTTCC----
T ss_pred HHHHHHhcCCCC
Confidence 999999987765
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2e-45 Score=323.90 Aligned_cols=165 Identities=36% Similarity=0.681 Sum_probs=156.6
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
+|||||||+|+|+|++|+.||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|++|++|+||++||.+|
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 599999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCeEEeEEEEecCcccccccCCCchhhHHHHHHhcchhh-HHHHHHHHHHhhccCCCCccccchhhHHHHHH
Q 043250 80 LECKHN-YGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSELEKCYPEN-MQRWKNALTEAANLSGFDSHVIRSESKLIEEI 157 (507)
Q Consensus 80 ~~~~~~-~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~-~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i 157 (507)
++|.+. +++.|+||||+|+|++||+|+ |.|+++|.+|++++.+. +++|+.||+++++++||++.....|+++|++|
T Consensus 115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~--g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~I 192 (204)
T 3ozi_A 115 VRRQEEDPRRIILPIFYMVDPSDVRHQT--GCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKV 192 (204)
T ss_dssp HHHHHHCTTSEECCEEESSCHHHHHHTC--TTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHH
T ss_pred HHHHHhcCCeeeEEEEeecCHHHHHhcc--ccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHH
Confidence 999875 578999999999999999999 99999999999998654 99999999999999999998877689999999
Q ss_pred HHhhhhcccc
Q 043250 158 ANDVLKRLDS 167 (507)
Q Consensus 158 ~~~~~~~l~~ 167 (507)
++++.++++.
T Consensus 193 v~di~~kl~~ 202 (204)
T 3ozi_A 193 SADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.4e-41 Score=355.86 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=221.1
Q ss_pred ccccchHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHh----hhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 177 VGVECPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFN----KISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
+||+.++++|.++|... .+..++|+|+||||+||||||+++++ ++..+|+..+|+. ++.... .++..++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999754 34589999999999999999999996 6888999999995 332211 36788889999
Q ss_pred HHHhcCCC------CCC------HHHHHHHHcCC-cEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhcC
Q 043250 252 SELLNDGN------RRN------IESQLNRLARK-KVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLKTCW 318 (507)
Q Consensus 252 ~~~~~~~~------~~~------~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~ 318 (507)
..+..... .+. ...+.+.|.++ ++||||||||+.+++ .+.. .+||+||||||+..++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88875421 111 34578889996 999999999998876 3322 27999999999999988765
Q ss_pred -CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHHHHHH-HhCCCC
Q 043250 319 -ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWESAMRK-LEVIPH 396 (507)
Q Consensus 319 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~-l~~~~~ 396 (507)
...+|+|++|+.++|++||..+++.... .+...+++.+|+++|+|+||||+.+|+.++.+.. +|...+.. +.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4467999999999999999999876532 3566788999999999999999999999977742 33333322 221122
Q ss_pred ch-----------HHHHHHHhHhcCChhHHHHHhhccccCCCCCHHHHHHHHHHc--CCCc-----------hhhHHHHh
Q 043250 397 EE-----------IQGVLKISYDSLDDSQKNVFLDIACLLEGTHRDYVISCLDAC--GFEP-----------KIELSVLE 452 (507)
Q Consensus 397 ~~-----------v~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~ 452 (507)
.. +...++.+|..|++.+|++|.+||+||.+++.+ +.+|.++ |+.. ...+++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 33 444455555555555555555999999987766 6677776 4432 23699999
Q ss_pred hCCceeeCC---CCeEEecHHHHHHHHHHHhhcC
Q 043250 453 CKSLINLDA---FDQIRMHDLLRDMGREIVRNES 483 (507)
Q Consensus 453 ~~sLi~~~~---~~~~~mH~lvr~~a~~~~~~~~ 483 (507)
++||++... .++|+|||+||++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999998643 3479999999999998776654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-38 Score=360.22 Aligned_cols=303 Identities=19% Similarity=0.255 Sum_probs=238.6
Q ss_pred cccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh---hcccccceEEEEechhhhccCCHH
Q 043250 168 TFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK---ISRHFEGSYFALNVREAEETGGIK 244 (507)
Q Consensus 168 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 244 (507)
.+|..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++ ...+|...+||..+..... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-SGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-hHHH
Confidence 45566788999999999999999766667899999999999999999999986 3566877776555543211 2233
Q ss_pred HHHHHHHHHHhcCCC-----CCCHHHH----HHHHcCC--cEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 245 DLQKKLLSELLNDGN-----RRNIESQ----LNRLARK--KVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 245 ~l~~~l~~~~~~~~~-----~~~~~~l----~~~l~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
..+..+...+..... ....+.+ ...+.++ |+||||||+|+..+++.+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 445556665544322 2344444 4445544 999999999998766543 689999999999988
Q ss_pred Hhh-cCCceeEecCC-CChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHHHHHHH
Q 043250 314 LKT-CWASQIYQMKE-LVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWESAMRKL 391 (507)
Q Consensus 314 ~~~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~l 391 (507)
+.. ......+++++ |+.+|+++||...+... .+...+.+.+|+++|+|+||||+++|++|+.+. ..|...++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 744 34567899996 99999999999888432 233446789999999999999999999998765 4688888888
Q ss_pred hCCCC-----------chHHHHHHHhHhcCChhHHHHHhhccccCCC--CCHHHHHHHHHHcCCCchhhHHHHhhCCcee
Q 043250 392 EVIPH-----------EEIQGVLKISYDSLDDSQKNVFLDIACLLEG--THRDYVISCLDACGFEPKIELSVLECKSLIN 458 (507)
Q Consensus 392 ~~~~~-----------~~v~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~ 458 (507)
..... ..+..+|..||+.|++++|.||++||+||.+ ++.+.+..+|..++......+++|+++||++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 65331 3589999999999999999999999999987 5788999999777667788899999999999
Q ss_pred eCCCCe---EEecHHHHHHHHHHHhhc
Q 043250 459 LDAFDQ---IRMHDLLRDMGREIVRNE 482 (507)
Q Consensus 459 ~~~~~~---~~mH~lvr~~a~~~~~~~ 482 (507)
...++. |+||+++|+++++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 765554 999999999999986654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=326.19 Aligned_cols=325 Identities=20% Similarity=0.240 Sum_probs=237.0
Q ss_pred cccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh---cccccceEEEEechhhhccCCHH
Q 043250 168 TFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI---SRHFEGSYFALNVREAEETGGIK 244 (507)
Q Consensus 168 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 244 (507)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+..+||.++..... ..+.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HHHH
Confidence 445667889999999999999997655668999999999999999999999854 677865444443433211 1122
Q ss_pred HHHHHHHHHHhcC-----CCCCCHHH----HHHHHcC--CcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 245 DLQKKLLSELLND-----GNRRNIES----QLNRLAR--KKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 245 ~l~~~l~~~~~~~-----~~~~~~~~----l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
..+..+...+... ......+. +...+.+ +++||||||+|+...++.+ +++++||||||+..+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHH
Confidence 2222333343321 11233333 4555554 7899999999997765532 578999999999987
Q ss_pred HhhcCCceeEec---CCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHHHHHH
Q 043250 314 LKTCWASQIYQM---KELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWESAMRK 390 (507)
Q Consensus 314 ~~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~ 390 (507)
...+. ...+++ ++|+.+|+.+||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+..
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 76543 334444 5899999999999988532 122245689999999999999999999997654 368888888
Q ss_pred HhCCC-----------CchHHHHHHHhHhcCChhHHHHHhhccccCCC--CCHHHHHHHHHHcCCCchhhHHHHhhCCce
Q 043250 391 LEVIP-----------HEEIQGVLKISYDSLDDSQKNVFLDIACLLEG--THRDYVISCLDACGFEPKIELSVLECKSLI 457 (507)
Q Consensus 391 l~~~~-----------~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi 457 (507)
+.... ...+..++..||+.||+++|.||+++|+||.+ ++.+.+..+|..+.......++.|+++||+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCe
Confidence 76532 24789999999999999999999999999875 677888888876544567789999999999
Q ss_pred eeCCC---CeEEecHHHHHHHHHHHhhc-------------------CCCCCCCcccccCchhHHHHhhc
Q 043250 458 NLDAF---DQIRMHDLLRDMGREIVRNE-------------------SIDYPGKRSRLWHHNDIYEVLKK 505 (507)
Q Consensus 458 ~~~~~---~~~~mH~lvr~~a~~~~~~~-------------------~~~~~~~r~rl~~~~d~~~~l~~ 505 (507)
....+ .+|+||+++|+++++....+ -+..++.+..+|+.+.+.+++.-
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a 494 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASA 494 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred EEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhc
Confidence 85432 36999999999998872210 12233455667777778777654
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.7e-37 Score=328.72 Aligned_cols=299 Identities=15% Similarity=0.152 Sum_probs=221.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHh--hhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFN--KISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++++ ++..+|+..++|.+++. ......++..+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~---~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC---SSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC---CCCHHHHHHHHH
Confidence 34599999999999999743 3478999999999999999999997 46788998444444433 344555555555
Q ss_pred HHHhcCC-----CCC-------CH----HHHHHHH---cCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 252 SELLNDG-----NRR-------NI----ESQLNRL---ARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 252 ~~~~~~~-----~~~-------~~----~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
..+.... ... .. +.+.+.+ .++++||||||+|+.++|+.+ ++||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChH
Confidence 4322110 011 11 2244444 679999999999998888875 27899999999998
Q ss_pred hHhhcCCceeEecC------CCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCC--CHHHH
Q 043250 313 VLKTCWASQIYQMK------ELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGR--SKEEW 384 (507)
Q Consensus 313 ~~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~--~~~~~ 384 (507)
++..+.....+.|+ +|+.+||++||.... +.. ..++..+ .|+|+||||+++|+.|+++ +...|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 87543333356666 999999999999884 222 1223333 3999999999999999876 67778
Q ss_pred HHHHHHHhCCCCchHHHHHHHhHhcCChhH-HHHHhhccccCCC--CCHHHHHHHHHHcCC-CchhhHHHHhhCCceeeC
Q 043250 385 ESAMRKLEVIPHEEIQGVLKISYDSLDDSQ-KNVFLDIACLLEG--THRDYVISCLDACGF-EPKIELSVLECKSLINLD 460 (507)
Q Consensus 385 ~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~-~~~l~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~ 460 (507)
... ....+..+|..||+.||+++ |.||++||+||.+ ++.+.+..+|...+. .+...+++|+++||++..
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe
Confidence 653 35789999999999999999 9999999999986 466788899987642 356789999999999976
Q ss_pred -CCCeEEecHHHHHHHHHHHhhcCCCCCCCcccccCchhHHHHhh
Q 043250 461 -AFDQIRMHDLLRDMGREIVRNESIDYPGKRSRLWHHNDIYEVLK 504 (507)
Q Consensus 461 -~~~~~~mH~lvr~~a~~~~~~~~~~~~~~r~rl~~~~d~~~~l~ 504 (507)
+.++|+||+|+++++ ......+..++|++++.++.+++.
T Consensus 421 ~~~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf~ 460 (1221)
T 1vt4_I 421 PKESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFD 460 (1221)
T ss_dssp SSSSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcCC
Confidence 356899999998843 112234566777777776665553
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=1.3e-29 Score=219.73 Aligned_cols=115 Identities=21% Similarity=0.360 Sum_probs=108.5
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
+|||||||+++| +..|+.+|+.+|+++|++||+|+ ++.+|+.|.++|.++|++|+++|+|+||+|++|.||+.||..+
T Consensus 20 ~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~ 98 (154)
T 3h16_A 20 PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98 (154)
T ss_dssp SEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred CceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence 599999999999 55799999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEeEEEEecCcccccccCCCchhhHHHHH
Q 043250 80 LECKHNYGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSEL 118 (507)
Q Consensus 80 ~~~~~~~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~ 118 (507)
+++...++..|+||||+|+|++|++|. |.|+++|...
T Consensus 99 ~~~~~~~~~~iiPV~~~v~p~~v~~~~--~~~~~~~~~~ 135 (154)
T 3h16_A 99 FQLESSGRSRILPIWHKVSKDEVASFS--PTMADKLAFN 135 (154)
T ss_dssp TCCCTTSCCCEEEEEESCCTGGGTTTC--CCCCSSCCEE
T ss_pred HHHHhcCCCEEEEEEecCCHHHHhhCC--ccHHHHHhhh
Confidence 998777778999999999999999999 9999887543
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=9.1e-26 Score=192.42 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=76.0
Q ss_pred CccEEEcCccccccCchHHHHHHHHhh--CCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSL--KSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELL 77 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~ 77 (507)
+|||||||+++|+ .|+.+|...|++ .|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+||+|++|.||..|+.
T Consensus 10 ~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~ 87 (146)
T 3ub2_A 10 DYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQML 87 (146)
T ss_dssp SEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHH
T ss_pred cceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHH
Confidence 5999999999994 589999999998 599999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeEEEEecCccc
Q 043250 78 KILECKHNYGQIVIPVFYHVDPSHV 102 (507)
Q Consensus 78 ~~~~~~~~~~~~v~pv~~~v~ps~v 102 (507)
.++.+......+||||||.|+++++
T Consensus 88 ~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 88 QALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHhhcCCcEEEEEcCCChhhC
Confidence 9999874344478899999975444
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=8.1e-23 Score=177.17 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=88.2
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCcccHHHHHHhh-hcceEEEEecCCCcCchhhHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLK--SIKTFIDD-QLIRGENISHSLLDTIE-ASSISIIIFSQRYASSRWCLDEL 76 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~s~~y~~s~~c~~El 76 (507)
.|||||||+++| .+|+.+|.+.|+++ |+++|+|+ |+.+|+.+.++|.++|+ .|+++|+|+||+|++|.||..|+
T Consensus 16 ~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El 93 (160)
T 2js7_A 16 RFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQT 93 (160)
T ss_dssp CEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHH
T ss_pred ceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHH
Confidence 599999999999 68999999999985 69999999 99999999999999999 79999999999999999999999
Q ss_pred HHHHHHH-HhCCCeEEeEEEEecC
Q 043250 77 LKILECK-HNYGQIVIPVFYHVDP 99 (507)
Q Consensus 77 ~~~~~~~-~~~~~~v~pv~~~v~p 99 (507)
..++.+. +..+.+||||+|+.-+
T Consensus 94 ~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 94 KFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHccCCCEEEEEEEcccc
Confidence 9999875 3345679999998653
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.85 E-value=8.5e-20 Score=180.94 Aligned_cols=290 Identities=14% Similarity=0.121 Sum_probs=180.3
Q ss_pred ccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh---ccC
Q 043250 165 LDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE---ETG 241 (507)
Q Consensus 165 l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~ 241 (507)
+.+.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+. +.... ...
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~ 72 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHI 72 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCB
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCC
Confidence 44566677789999999999999998642 6899999999999999999998751 45554 32221 011
Q ss_pred CHHHHHHHHHHHHhc-----------------CCC--CCCHHHHHHHH----c-CCcEEEEEcCCCCHH--------HHH
Q 043250 242 GIKDLQKKLLSELLN-----------------DGN--RRNIESQLNRL----A-RKKVLIVFDDVSHRR--------QIE 289 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~-----------------~~~--~~~~~~l~~~l----~-~~~~LlVlDdv~~~~--------~~~ 289 (507)
....+...+...+.. ... ...+..+.+.+ . .++++|||||++... .+.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 334444444433211 000 13444443333 2 149999999995422 222
Q ss_pred HHHcccCCCCCCcEEEEEeCchhhHhh-----------c-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHH
Q 043250 290 SLIGCLDELASGSRVIITTRDKQVLKT-----------C-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDR 357 (507)
Q Consensus 290 ~l~~~l~~~~~~~~iliTtR~~~~~~~-----------~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.++..+....++.++|+|++....... . .....+++.+|+.+|+.+++......... ....+.+..
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~~~~~~~~~ 230 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--DVPENEIEE 230 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 222221111257789999887643221 1 11347899999999999999775421111 123567889
Q ss_pred HHHHhCCChHHHHHHHhhhCC-CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcC---ChhHHHHHhhccccCCCCCHHHH
Q 043250 358 AIKYAQGVPLALKVLGCHLCG-RSKEEWESAMRKLEVIPHEEIQGVLKISYDSL---DDSQKNVFLDIACLLEGTHRDYV 433 (507)
Q Consensus 358 i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l 433 (507)
+++.++|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ ...+...+
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l 301 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLI 301 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHH
Confidence 999999999999999876432 2222221 1110 11222233334444 7889999999998 34566777
Q ss_pred HHHHHHc--CCC---chhhHHHHhhCCceeeCCCCeEE-ecHHHHHHHH
Q 043250 434 ISCLDAC--GFE---PKIELSVLECKSLINLDAFDQIR-MHDLLRDMGR 476 (507)
Q Consensus 434 ~~~~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~lvr~~a~ 476 (507)
...+... +.. ....++.|.+.+||... ++.|. .|++++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 6665322 222 34579999999999876 45554 5889998764
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=6.1e-23 Score=176.18 Aligned_cols=94 Identities=21% Similarity=0.332 Sum_probs=86.4
Q ss_pred CccEEEcCccccccCchHHH-HHHHHhhC--CCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSI-LHYVLSLK--SIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDEL 76 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El 76 (507)
.|||||||+++| .+|+.+ |.+.|+++ |+++|+|+ |+.+|+.+.++|.++|++|+++|+|+||+|++|.||..|+
T Consensus 5 ~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El 82 (149)
T 1fyx_A 5 XYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82 (149)
T ss_dssp CEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHS
T ss_pred cceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHH
Confidence 599999999999 479997 99999987 99999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHhCCCeEEeEEEE
Q 043250 77 LKILEC-KHNYGQIVIPVFYH 96 (507)
Q Consensus 77 ~~~~~~-~~~~~~~v~pv~~~ 96 (507)
..++.+ .+.++..||||||+
T Consensus 83 ~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 83 DFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp CCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEEEec
Confidence 988853 35566789999997
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=9.4e-22 Score=170.26 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=87.8
Q ss_pred CccEEEcCccccc---------cCchHHHHHH-HHh-hCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCc-
Q 043250 1 MYDVFLSFRGEDT---------RDNFTSILHY-VLS-LKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYA- 67 (507)
Q Consensus 1 ~~dvFis~~~~d~---------~~~~~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~- 67 (507)
.|||||||+++|+ +.+|+.++.. .|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+||+|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 5999999999996 3468888665 699 7999999999 9999999999999999999999999999997
Q ss_pred CchhhHHHHHHHHHHH-HhCCCeEEeEEEEecC
Q 043250 68 SSRWCLDELLKILECK-HNYGQIVIPVFYHVDP 99 (507)
Q Consensus 68 ~s~~c~~El~~~~~~~-~~~~~~v~pv~~~v~p 99 (507)
+|.||..|+..++.+. +.++..||||+|...+
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999886 5667899999987433
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.84 E-value=2.4e-22 Score=176.92 Aligned_cols=95 Identities=22% Similarity=0.345 Sum_probs=83.1
Q ss_pred CccEEEcCccccccCchHHH-HHHHHhh--CCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSI-LHYVLSL--KSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDEL 76 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El 76 (507)
.|||||||+++| .+|+.+ |.+.|++ +|+++|+|+ |+.+|+.|.++|.++|++|+++|+|+||+|++|.||..|+
T Consensus 35 ~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El 112 (178)
T 2j67_A 35 RFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112 (178)
T ss_dssp CEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred cceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence 599999999999 579985 9999998 899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCeEEeEEEEe
Q 043250 77 LKILECK-HNYGQIVIPVFYHV 97 (507)
Q Consensus 77 ~~~~~~~-~~~~~~v~pv~~~v 97 (507)
..++.+. +..+.+||||||+.
T Consensus 113 ~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 113 YFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp HHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEEEecC
Confidence 9998643 45567899999984
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.83 E-value=1.5e-19 Score=179.64 Aligned_cols=285 Identities=16% Similarity=0.149 Sum_probs=174.6
Q ss_pred cccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh--ccCCH
Q 043250 166 DSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE--ETGGI 243 (507)
Q Consensus 166 ~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~ 243 (507)
.+.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+.+++++... ..+|+. ..... .....
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 74 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISY 74 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCH
Confidence 44555677889999999999999 753 58999999999999999999987643 245554 32210 01122
Q ss_pred HHHHHHHHHHHh-------------cC-------C----------CCCCHHHHHHHHcC---CcEEEEEcCCCCHH----
Q 043250 244 KDLQKKLLSELL-------------ND-------G----------NRRNIESQLNRLAR---KKVLIVFDDVSHRR---- 286 (507)
Q Consensus 244 ~~l~~~l~~~~~-------------~~-------~----------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~---- 286 (507)
......+...+. .. . ....+..+.+.+.. ++++|||||++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 333333322211 00 0 12345555555532 49999999995422
Q ss_pred -HHHHHHcccCCCCCCcEEEEEeCchhhHhh----------c-CC-ceeEecCCCChHHHHHHHHHhhcCCCCCCCChHH
Q 043250 287 -QIESLIGCLDELASGSRVIITTRDKQVLKT----------C-WA-SQIYQMKELVYADAHKLFCQCAFGGDHPDASHTE 353 (507)
Q Consensus 287 -~~~~l~~~l~~~~~~~~iliTtR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~ 353 (507)
.+..++..+....++.++|+|++....... . +. ...+.+.+|+.+|+.+++.............
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---
Confidence 122222211111246789999997653221 1 11 3578999999999999998754211111111
Q ss_pred HHHHHHHHhCCChHHHHHHHhhhCC-CCHHHHHHHHHHHhCCCCchHHHHHHHhHh-------cCChhHHHHHhhccccC
Q 043250 354 LTDRAIKYAQGVPLALKVLGCHLCG-RSKEEWESAMRKLEVIPHEEIQGVLKISYD-------SLDDSQKNVFLDIACLL 425 (507)
Q Consensus 354 ~~~~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~-------~L~~~~~~~l~~la~f~ 425 (507)
...+++.|+|+|++++.++..+.. .+...|... +. +.+...+...+. .|++.++.++..+|+ .
T Consensus 232 -~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g 302 (357)
T 2fna_A 232 -YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TL----EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C 302 (357)
T ss_dssp -HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HH----HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHH---HH----HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C
Confidence 278999999999999999877632 233333211 10 112222222222 688899999999998 3
Q ss_pred CCCCHHHHHHHHH-HcC--C---CchhhHHHHhhCCceeeCCCCeEE-ecHHHHHHH
Q 043250 426 EGTHRDYVISCLD-ACG--F---EPKIELSVLECKSLINLDAFDQIR-MHDLLRDMG 475 (507)
Q Consensus 426 ~~~~~~~l~~~~~-~~~--~---~~~~~l~~L~~~sLi~~~~~~~~~-mH~lvr~~a 475 (507)
. +...+...+. ..+ . .....++.|++.+||...+ +.|+ .|++++++.
T Consensus 303 -~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 -G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp -B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred -C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 3 6666665432 123 2 2345799999999999874 5555 689999874
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.75 E-value=4.3e-17 Score=165.32 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=169.7
Q ss_pred ccCCccccccchHHHHHHhh-hc--CC--CCceEEEE--eccccchhhHHHHHHHhhhccc-----ccc-eEEEEechhh
Q 043250 171 SENKGLVGVECPIEEIESLL-CI--GS--EGVCKLGI--WGIGGIGKTTIAGAVFNKISRH-----FEG-SYFALNVREA 237 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~-~~~~~~~~~~ 237 (507)
..+..|+||+.++++|.+++ .. .. ...+.+.| +|++|+|||+|++.+++..... +.. .+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34578999999999999988 53 12 24556777 9999999999999999876542 122 34444 2
Q ss_pred hccCCHHHHHHHHHHHHhcCCC--CCCH----HHHHHHHc--CCcEEEEEcCCCCH--------HHHHHHHcccCCC---
Q 043250 238 EETGGIKDLQKKLLSELLNDGN--RRNI----ESQLNRLA--RKKVLIVFDDVSHR--------RQIESLIGCLDEL--- 298 (507)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~~~~--~~~~----~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~l~~~--- 298 (507)
........++..++..+..... .... ..+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 2335667778888777754322 1122 23444443 67999999999653 3344443332211
Q ss_pred C--CCcEEEEEeCchhhHhhc---------CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhC----
Q 043250 299 A--SGSRVIITTRDKQVLKTC---------WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQ---- 363 (507)
Q Consensus 299 ~--~~~~iliTtR~~~~~~~~---------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 363 (507)
+ ....+|+||+........ .....+.+++|+.+++.++|...+...........+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345578788765432111 1123399999999999999976542111112234677889999999
Q ss_pred --CChHHHHHHHhhhC------C---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccC----CCC
Q 043250 364 --GVPLALKVLGCHLC------G---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLL----EGT 428 (507)
Q Consensus 364 --G~PLal~~~~~~l~------~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~----~~~ 428 (507)
|+|..+..++.... + -+...+...+..... ...+..++..||+.++.+|..+|++. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99976665543321 1 123333333332110 22344456789999999999998754 234
Q ss_pred CHHHHHH----HH-HHcCCC------chhhHHHHhhCCceeeC
Q 043250 429 HRDYVIS----CL-DACGFE------PKIELSVLECKSLINLD 460 (507)
Q Consensus 429 ~~~~l~~----~~-~~~~~~------~~~~l~~L~~~sLi~~~ 460 (507)
+...+.. +. ...+.. ....++.|.+.|||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 5544432 22 222321 23568999999999864
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.3e-14 Score=145.51 Aligned_cols=273 Identities=15% Similarity=0.069 Sum_probs=171.1
Q ss_pred cCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhccc--------ccceEEEEechhhhccC
Q 043250 172 ENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH--------FEGSYFALNVREAEETG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 241 (507)
.++.|+||+.+++++..++.. ..+..+.+.|+|++|+|||+||+.+++.+... ....+++. . ....
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~---~~~~ 93 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-C---REVG 93 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-H---HHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-C---ccCC
Confidence 347899999999999988864 23446689999999999999999999876433 22334443 2 2223
Q ss_pred -CHHHHHHHHHHHHhcCCC---C----CCHHHHHHHHcCCcEEEEEcCCCCHHH-------HHHHHcccCCCCCCcEEEE
Q 043250 242 -GIKDLQKKLLSELLNDGN---R----RNIESQLNRLARKKVLIVFDDVSHRRQ-------IESLIGCLDELASGSRVII 306 (507)
Q Consensus 242 -~~~~l~~~l~~~~~~~~~---~----~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~~~ili 306 (507)
....++..++..+.+... . ..++.+.+.+..++.+|||||++.... +..+.... .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 566677777776633221 1 113346666777666999999965432 33333321 6778899
Q ss_pred EeCchhhH----hhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhC---CChH-HHHHHHhhh
Q 043250 307 TTRDKQVL----KTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQ---GVPL-ALKVLGCHL 376 (507)
Q Consensus 307 TtR~~~~~----~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~~~~l 376 (507)
||+..... ... .....+.+++++.++..+++...+...........+..+.+++.++ |+|. ++..+-...
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99875321 110 1224899999999999999988752111111223456778888888 9887 333332222
Q ss_pred --C----CCCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCC-CCCHHHHHHHHHHcCCC------
Q 043250 377 --C----GRSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLE-GTHRDYVISCLDACGFE------ 443 (507)
Q Consensus 377 --~----~~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~~~~~~~~~------ 443 (507)
. .-+.+.+..++.... ...+..+++.|++.++.++..++.... +-..+....+....|..
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 1 235666666666542 245677889999999999988887111 10011223333332211
Q ss_pred chhhHHHHhhCCceee
Q 043250 444 PKIELSVLECKSLINL 459 (507)
Q Consensus 444 ~~~~l~~L~~~sLi~~ 459 (507)
....++.|.+.|||+.
T Consensus 323 ~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 323 FSDIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCEEE
Confidence 2346889999999985
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=6.9e-15 Score=147.44 Aligned_cols=279 Identities=16% Similarity=0.101 Sum_probs=169.1
Q ss_pred ccCCccccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhcccc---cceEEEEechhhhccCCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---EGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~ 245 (507)
..+..|+||+.+++.|.+++... ....+.+.|+|++|+|||||++.+++.+...+ ...+|+. . ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCCCCHHH
Confidence 44578999999999999988742 34466899999999999999999999775543 2334444 2 22334555
Q ss_pred HHHHHHHHHhcCCC--CCCHH----HHHHHHc--CCcEEEEEcCCCCH------HHHHHHHcccCC-CCCCcEEEEEeCc
Q 043250 246 LQKKLLSELLNDGN--RRNIE----SQLNRLA--RKKVLIVFDDVSHR------RQIESLIGCLDE-LASGSRVIITTRD 310 (507)
Q Consensus 246 l~~~l~~~~~~~~~--~~~~~----~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~l~~-~~~~~~iliTtR~ 310 (507)
+...++..+..... ..... .+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 56665555432221 11222 2444443 35899999999543 234444433311 1345667888876
Q ss_pred hhhHhhcC-------CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhC---CChHHHHHHHhhhC---
Q 043250 311 KQVLKTCW-------ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQ---GVPLALKVLGCHLC--- 377 (507)
Q Consensus 311 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~l~--- 377 (507)
........ ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64322211 125799999999999999987642111122334667788888888 99985444332221
Q ss_pred ---C---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCC-C---CCHHHH----HHHHHHcCCC
Q 043250 378 ---G---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLE-G---THRDYV----ISCLDACGFE 443 (507)
Q Consensus 378 ---~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~-~---~~~~~l----~~~~~~~~~~ 443 (507)
+ -+.+.+..++.... ...+..++..|++.++.++..++.+.. + ++...+ ..+....+..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 24455555544432 345677788999999999988886432 1 334333 2222222221
Q ss_pred ------chhhHHHHhhCCceeeC
Q 043250 444 ------PKIELSVLECKSLINLD 460 (507)
Q Consensus 444 ------~~~~l~~L~~~sLi~~~ 460 (507)
....++.|.+.|||+..
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 34568899999999853
No 18
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=6.6e-14 Score=140.35 Aligned_cols=278 Identities=15% Similarity=0.105 Sum_probs=167.8
Q ss_pred cCCccccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhcccc-----c-ceEEEEechhhhccCCH
Q 043250 172 ENKGLVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-----E-GSYFALNVREAEETGGI 243 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 243 (507)
.++.|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++...... . ..+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4578999999999999998642 34466899999999999999999998764431 2 233443 2334456
Q ss_pred HHHHHHHHHHHhcCCC--CCCH----HHHHHHH--cCCcEEEEEcCCCCHH-------HHHHHHcccCCC--CCCcEEEE
Q 043250 244 KDLQKKLLSELLNDGN--RRNI----ESQLNRL--ARKKVLIVFDDVSHRR-------QIESLIGCLDEL--ASGSRVII 306 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~--~~~~----~~l~~~l--~~~~~LlVlDdv~~~~-------~~~~l~~~l~~~--~~~~~ili 306 (507)
..+...++..+..... .... +.+.+.+ .+++.+||||+++... .+..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 6777777777654322 1112 2344455 3468999999997543 233333322211 34567788
Q ss_pred EeCchhhHhhc------C-CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhC---CChHHHHHHHh-h
Q 043250 307 TTRDKQVLKTC------W-ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQ---GVPLALKVLGC-H 375 (507)
Q Consensus 307 TtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~-~ 375 (507)
||+.......+ . ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+.. .
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88765321111 1 125789999999999999987752100111122345778888888 99943333222 2
Q ss_pred h---C--C---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCCC---CCHHHHHHH----HHHc
Q 043250 376 L---C--G---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLEG---THRDYVISC----LDAC 440 (507)
Q Consensus 376 l---~--~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~~---~~~~~l~~~----~~~~ 440 (507)
. . + -+.+.+..++.... ...+..++..|++.++.++..++.+..+ +....+... ....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 1 1 24556665555432 2356677899999999998888754322 334433222 2222
Q ss_pred CC------CchhhHHHHhhCCceeeC
Q 043250 441 GF------EPKIELSVLECKSLINLD 460 (507)
Q Consensus 441 ~~------~~~~~l~~L~~~sLi~~~ 460 (507)
+. .....++.|...|+++..
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 21 123468889999999863
No 19
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=7e-14 Score=140.37 Aligned_cols=300 Identities=12% Similarity=0.065 Sum_probs=183.8
Q ss_pred cCCccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccc-cceEEEEechhhhccCCHHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 246 (507)
.|+.++||+.+++.|..++.. ..+..+.+.|+|++|+|||||++.+++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 447899999999999998875 122234899999999999999999998875542 2334443 2233455667
Q ss_pred HHHHHHHHhcCCC--CCCHHH----HHHHH--cCCcEEEEEcCCCC--HHHHHHHHcccCCCC----CCcEEEEEeCchh
Q 043250 247 QKKLLSELLNDGN--RRNIES----QLNRL--ARKKVLIVFDDVSH--RRQIESLIGCLDELA----SGSRVIITTRDKQ 312 (507)
Q Consensus 247 ~~~l~~~~~~~~~--~~~~~~----l~~~l--~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~----~~~~iliTtR~~~ 312 (507)
...++..+..... ...... +...+ .+++.+||||+++. ...+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 7777766643322 112222 33333 25689999999964 445555555443211 4667888887664
Q ss_pred hHhhcC-------CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHh---------CCChHHHHHHHhhh
Q 043250 313 VLKTCW-------ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYA---------QGVPLALKVLGCHL 376 (507)
Q Consensus 313 ~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~~~~l 376 (507)
...... ....+.+++++.++..+++...+...........+....+++.+ +|+|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322221 12369999999999999998775321111234467788999999 79986655544322
Q ss_pred C------C---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccC---C--CCCHHHHHHHHHH---
Q 043250 377 C------G---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLL---E--GTHRDYVISCLDA--- 439 (507)
Q Consensus 377 ~------~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~~~~~--- 439 (507)
. + -+.+............ .+...+..|++.++.++..++.+. . .++...+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 2334444444333211 123446789999999998888654 2 3455555443332
Q ss_pred -cCC------CchhhHHHHhhCCceeeCCC-------CeE-------EecHHHHHHHHHHHhhc
Q 043250 440 -CGF------EPKIELSVLECKSLINLDAF-------DQI-------RMHDLLRDMGREIVRNE 482 (507)
Q Consensus 440 -~~~------~~~~~l~~L~~~sLi~~~~~-------~~~-------~mH~lvr~~a~~~~~~~ 482 (507)
.+. .....++.|...|||..... |++ ..|++++.+...++.++
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 221 12346899999999996422 222 24577777777666654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=2.8e-15 Score=165.82 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=88.5
Q ss_pred CccEEEcCccccccCchH-HHHHHHHhh-----CCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhH
Q 043250 1 MYDVFLSFRGEDTRDNFT-SILHYVLSL-----KSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCL 73 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~-~~l~~~l~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~ 73 (507)
+|||||||+++| ..|| .+|...|+. .|+++|+++ |+.+|+.|.++|.++|++|+++|+|+|++|+.|.||.
T Consensus 670 ~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~ 747 (844)
T 3j0a_A 670 KYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCL 747 (844)
T ss_dssp CCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTT
T ss_pred eccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHH
Confidence 599999999999 5788 779999984 689999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhCCCeEEeEEEEecCc
Q 043250 74 DELLKILECK-HNYGQIVIPVFYHVDPS 100 (507)
Q Consensus 74 ~El~~~~~~~-~~~~~~v~pv~~~v~ps 100 (507)
.|+..++.+. ++.+++||||||+.-|.
T Consensus 748 ~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 748 EAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp HHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999888765 56677899999995443
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.46 E-value=2e-12 Score=120.48 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=119.8
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc---------------------eE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG---------------------SY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---------------------~~ 229 (507)
.....++||+.+++.|..++..+. ..+.+.|+|++|+|||+||+.+++.+...+.. ..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceE
Confidence 334579999999999999987532 23578999999999999999999876433211 01
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEE
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIIT 307 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliT 307 (507)
... .. ..........++..+... ...+++.+|||||++ +...+..++..+.....+..+|+|
T Consensus 99 ~~~-~~----~~~~~~~~~~~~~~~~~~-----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 162 (250)
T 1njg_A 99 EID-AA----SRTKVEDTRDLLDNVQYA-----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 162 (250)
T ss_dssp EEE-TT----CGGGHHHHHHHHHSCCCS-----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred Eec-Cc----ccccHHHHHHHHHHhhhc-----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE
Confidence 110 00 000011111111111000 013467999999995 455566666655544567788888
Q ss_pred eCchhhH-h-hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 308 TRDKQVL-K-TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 308 tR~~~~~-~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
|+..... . .......+++++++.++..+++...+.... .....+....|++.++|+|..+..+...+
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765321 1 112346899999999999999987763322 22335678899999999999988876544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.4e-12 Score=118.28 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=116.8
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
|.....++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+. ........+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVVRH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHHHH
Confidence 3444679999999999999997532 2348999999999999999999876433 2222222211 11122222222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchhhH-h-hcCCceeEe
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQVL-K-TCWASQIYQ 324 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~~-~-~~~~~~~~~ 324 (507)
.+ ........ ....++.+|||||++. ....+.+...+.....++.+|+||+..... . .......++
T Consensus 88 ~~-~~~~~~~~---------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 88 KI-KEFARTAP---------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp HH-HHHHTSCC---------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HH-HHHhcccC---------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 11 11111000 0125789999999964 344444544443335677888888765321 1 112335899
Q ss_pred cCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHh
Q 043250 325 MKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGC 374 (507)
Q Consensus 325 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 374 (507)
+.+++.++..+++...+..... ....+....+++.++|+|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999876632111 23356788899999999996655443
No 23
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=7.2e-11 Score=115.29 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=116.8
Q ss_pred cccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHH
Q 043250 168 TFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 168 ~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l 246 (507)
..|.....++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+... +...+...+.........+...
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREK 96 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHH
Confidence 34445567999999999999998754 23348999999999999999999876432 2111222111111000111111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchhh-Hhhc-CCcee
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQV-LKTC-WASQI 322 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~-~~~~-~~~~~ 322 (507)
...+.. .. ....+++.++|+|+++. ......+...+.....++++|+||..... .+.. .....
T Consensus 97 ~~~~~~----~~---------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 97 VKEFAR----TK---------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHHH----SC---------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHHHh----hC---------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 111110 00 00125688999999964 34455555544434567788888876532 1111 13357
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 323 YQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 323 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
+.+.+++.++..+++...+.... .....+....+++.++|+|..+..+...
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999987763322 1234577889999999999866554433
No 24
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=3.9e-11 Score=117.00 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=113.9
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
|.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+... +...+...+. +...+... ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-i~ 90 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRGIDV-VR 90 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCSHHH-HH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccChHH-HH
Confidence 3344679999999999999987432 2238999999999999999999876332 2222222211 11112222 22
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchhh-Hhh-cCCceeE
Q 043250 249 KLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQV-LKT-CWASQIY 323 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~-~~~-~~~~~~~ 323 (507)
.+...+.... ..+ .+++.++|+||++. ......+...+....+++.+|+||..... .+. ......+
T Consensus 91 ~~~~~~~~~~---------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 91 NQIKHFAQKK---------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp THHHHHHHBC---------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHHHhcc---------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 2222211000 001 34588999999964 33444444433333466788888866432 111 1244689
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH-HHHHH
Q 043250 324 QMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA-LKVLG 373 (507)
Q Consensus 324 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~~ 373 (507)
++.+++.++..+++...+.... .....+.+..+++.++|.|.. +..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLED--VKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999987653211 123356788999999999954 44443
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.20 E-value=8.5e-10 Score=107.61 Aligned_cols=260 Identities=13% Similarity=0.048 Sum_probs=151.8
Q ss_pred ccCCccccccchHHHHHHhhhc---CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCI---GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
...+.|+|++..++.+..++.. .......+.|+|++|+|||+||+.+++.....| +++. ... ......
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~---~~~~~~-- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA---IEKPGD-- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT---CCSHHH--
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc---cCChHH--
Confidence 3456899999999999888753 122345688999999999999999998764322 2222 111 111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHc---CCcEEEEEcCCCCH--HHHHHHHcccCCC------------------CCCcEE
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLA---RKKVLIVFDDVSHR--RQIESLIGCLDEL------------------ASGSRV 304 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~~i 304 (507)
+...+. .++.+|+||+++.. .....++..+... .++..+
T Consensus 80 ------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 ------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 122222 35679999999653 2333333222110 124566
Q ss_pred EEEeCchhhH-hhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCC---
Q 043250 305 IITTRDKQVL-KTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCG--- 378 (507)
Q Consensus 305 liTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~--- 378 (507)
|.||...... ..+ .....+.+.+++.++..+++...+.... .....+....+++.++|+|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 7666544221 111 1235789999999999999988763322 2234677899999999999988777655422
Q ss_pred ------CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhcccc-C-CCCCHHHHHHHHHHcCCCchhhHHH
Q 043250 379 ------RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACL-L-EGTHRDYVISCLDACGFEPKIELSV 450 (507)
Q Consensus 379 ------~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f-~-~~~~~~~l~~~~~~~~~~~~~~l~~ 450 (507)
-+.......+..+. .....|++.++..+..+... . ..++...+...++.........++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALG------------LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred HhcCCCCCHHHHHHHHHHhc------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 12333333332221 12345777777777766543 2 2356777666653322122223444
Q ss_pred -HhhCCceeeCCCCeEEecHHHH
Q 043250 451 -LECKSLINLDAFDQIRMHDLLR 472 (507)
Q Consensus 451 -L~~~sLi~~~~~~~~~mH~lvr 472 (507)
+++.+++.....|+ .+-+...
T Consensus 288 ~~i~~~li~~~~~g~-~~~~~~~ 309 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGR-VPTELAY 309 (324)
T ss_dssp HHHHTTSEEEETTEE-EECHHHH
T ss_pred HHHHhcchhcCCccc-eecHHHH
Confidence 78899998775554 3343333
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.19 E-value=6.4e-10 Score=108.09 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=117.5
Q ss_pred ccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHH
Q 043250 167 STFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 167 ~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...|.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+.........+..
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSH
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHH
Confidence 344445567999999999999998743 2233899999999999999999987632 2222122222111111111111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchh-hHhh-cCCc
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQ-VLKT-CWAS 320 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~ 320 (507)
....+.... .+ .+++.++|+|+++. ......+...+.....++.+|+||.... +.+. ....
T Consensus 88 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 88 KIKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp HHHHHHHSC--------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHhcC--------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 111111000 01 25688999999964 3445666666655556777888776553 2111 1234
Q ss_pred eeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 321 QIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 321 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
..+++.+++.++..+++...+.... .....+....+++.++|++..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTC--CCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6899999999999999987763322 22346778889999999998655443
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.06 E-value=4.3e-09 Score=104.66 Aligned_cols=191 Identities=15% Similarity=0.136 Sum_probs=116.8
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
....++|++..++.|...+..+. ....+.|+|++|+|||++|+.+++.+....... .. ....... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~-------~~~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT-------PCGVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS-------CCSSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC-------CCcccHH-HHHHh
Confidence 44679999999999999987532 235788999999999999999998764321100 00 0000000 00000
Q ss_pred HH-------Hhc--CCCCCCHHHHHHHHc-----CCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchhh-H
Q 043250 252 SE-------LLN--DGNRRNIESQLNRLA-----RKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQV-L 314 (507)
Q Consensus 252 ~~-------~~~--~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~-~ 314 (507)
.. +.. ....+.+..+.+.+. +++.++|+||++. ......++..+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 000 011234444444443 4578999999953 44556665555444456677777764432 1
Q ss_pred h-hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHh
Q 043250 315 K-TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGC 374 (507)
Q Consensus 315 ~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 374 (507)
. .......+++.+++.++..+++...+.... .....+.+..+++.++|+|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~--~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1 112357899999999999999987652211 123356688899999999998776653
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.03 E-value=1.7e-08 Score=98.90 Aligned_cols=257 Identities=12% Similarity=0.108 Sum_probs=148.6
Q ss_pred cCCccccccchHHHHHHhhhcC---CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIG---SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
....++|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| +.+. .... .....+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~~~~~~- 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EKSGDLA- 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CSHHHHH-
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cchhHHH-
Confidence 4467999999999999888642 33445689999999999999999998764332 2221 1111 1111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCC------------------CCCcEEEEEe
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDEL------------------ASGSRVIITT 308 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~------------------~~~~~iliTt 308 (507)
..+.. ..++.+|+||+++. ......++..+... .++..+|.+|
T Consensus 99 ~~~~~-----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 99 AILTN-----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp HHHHT-----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred HHHHh-----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 11110 23567999999964 33333343322211 1134566666
Q ss_pred Cchhh-Hhhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhC------C-
Q 043250 309 RDKQV-LKTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLC------G- 378 (507)
Q Consensus 309 R~~~~-~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~------~- 378 (507)
..... .+.+ .....+.+.+++.++..+++...+.... .....+....+++.+.|+|-.+..+...+. +
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 239 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDE 239 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcC
Confidence 54322 1111 2346899999999999999987763221 223457788899999999976655543321 1
Q ss_pred --CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCC-CCCHHHHHHHHHHcCCCchhhHH-HHhhC
Q 043250 379 --RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLE-GTHRDYVISCLDACGFEPKIELS-VLECK 454 (507)
Q Consensus 379 --~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~ 454 (507)
-+.......+..+ ..+...++..++..+..++-... ..+...+...+..........++ .|++.
T Consensus 240 ~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~ 307 (338)
T 3pfi_A 240 EIITEKRANEALNSL------------GVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLAN 307 (338)
T ss_dssp SEECHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHT
T ss_pred CccCHHHHHHHHHHh------------CCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHc
Confidence 1222222222221 11223455555666666665522 24577777666433222333455 78899
Q ss_pred CceeeCCCCeEEe
Q 043250 455 SLINLDAFDQIRM 467 (507)
Q Consensus 455 sLi~~~~~~~~~m 467 (507)
+||.....|+...
T Consensus 308 gli~~~~~g~~~t 320 (338)
T 3pfi_A 308 GYIERTAKGRIAS 320 (338)
T ss_dssp TSEEEETTEEEEC
T ss_pred CceecCCCccccc
Confidence 9999876676543
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=6.8e-08 Score=95.13 Aligned_cols=197 Identities=11% Similarity=0.116 Sum_probs=113.3
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc--cccceEEEEechhhhccCCHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
.|.....++|++..++.+..++..+.. +.+.|+|++|+|||++|+.+++.+.. .+...+...+.. .......+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 106 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERGISIV 106 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCCHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccchHHH
Confidence 344457799999999999999874322 23899999999999999999987542 122222222111 11222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHH-HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchh-hHhhc-CCce
Q 043250 247 QKKLLSELLNDGNRRNIESQLNR-LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQ-VLKTC-WASQ 321 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~~-~~~~ 321 (507)
.+.................... -..++-+|++|+++. ......++..+.......++|++|.... +.+.. ....
T Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 107 -REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp -TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred -HHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 1111111111000000000111 123567999999953 3334444444433345567777765442 21111 1235
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 322 IYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 322 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
.+.+.+++.++..+.+...+.... .....+..+.|++.++|.|..+..+.
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQEN--VKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999987663222 12346778999999999998654443
No 30
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.89 E-value=2.2e-08 Score=89.20 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=84.3
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEEechhhhccCCHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 245 (507)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+... ....++..+............
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 346799999999999999864 334568899999999999999999876331 012233332222111011100
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH--cCCcEEEEEcCCCCHH---------H-HHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRL--ARKKVLIVFDDVSHRR---------Q-IESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
..... +..+.+.+ .+++.+|||||++... . ...+...+. ..+..+|+||.....
T Consensus 98 ~~~~~------------~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 98 EFEER------------LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEY 163 (195)
T ss_dssp HHHHH------------HHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHH
T ss_pred cHHHH------------HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHH
Confidence 00000 11122211 3568899999996431 1 122222111 234557777765542
Q ss_pred Hh-------hcCCceeEecCCCChHHHHHHH
Q 043250 314 LK-------TCWASQIYQMKELVYADAHKLF 337 (507)
Q Consensus 314 ~~-------~~~~~~~~~l~~L~~~ea~~L~ 337 (507)
.. .......+.+.+++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11 1122336889999988877654
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=6.7e-08 Score=92.23 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=106.3
Q ss_pred cccCCccccccchHHHHHHhhhcC-----------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh
Q 043250 170 QSENKGLVGVECPIEEIESLLCIG-----------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE 238 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 238 (507)
....+.++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++..... +.........
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHH
Confidence 344567999999999998877431 1345668999999999999999999876432 2222222111
Q ss_pred cc-CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccC--CC
Q 043250 239 ET-GG-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLD--EL 298 (507)
Q Consensus 239 ~~-~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~--~~ 298 (507)
.. .+ .......+ +.......+.+|+||+++.. ..+..++..+. ..
T Consensus 89 ~~~~~~~~~~~~~~---------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 KKFIGEGASLVKDI---------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CCSTTHHHHHHHHH---------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred HhccchHHHHHHHH---------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 11 00 01111111 12223456789999999643 12333333322 12
Q ss_pred CCCcEEEEEeCchhhHh-----hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCC-ChHHHHHH
Q 043250 299 ASGSRVIITTRDKQVLK-----TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQG-VPLALKVL 372 (507)
Q Consensus 299 ~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 372 (507)
..+..||.||....... .......+.+++++.++..+++............ .....+++.+.| .|-.|+.+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 34567788887553321 1123457899999999999999887643222211 125667777777 45455554
Q ss_pred H
Q 043250 373 G 373 (507)
Q Consensus 373 ~ 373 (507)
.
T Consensus 231 ~ 231 (285)
T 3h4m_A 231 C 231 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.86 E-value=5.8e-09 Score=96.80 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=102.1
Q ss_pred cCCcccccc---chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 172 ENKGLVGVE---CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 172 ~~~~~vGR~---~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
..+.|+|++ ..++.+..+.... ..+.+.|+|++|+|||+||+.+++..........++. ....... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H-----
Confidence 346788743 4455566665432 4567899999999999999999997765434445554 2221110 0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH----HHHHHHcccCCC-CCC-cEEEEEeCchhh---------
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR----QIESLIGCLDEL-ASG-SRVIITTRDKQV--------- 313 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~~-~~~-~~iliTtR~~~~--------- 313 (507)
....+.+ .++.+|||||++... ..+.+...+... ..+ .++|+||+...-
T Consensus 96 ---------------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 96 ---------------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---------------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---------------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 0000111 345689999995321 122232221100 122 247777764321
Q ss_pred HhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 314 LKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 314 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
...+.....+++.+++.++..+++...+.... .....+..+.+++.++|++-.+..+...
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG--LQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11111126799999999999999988763221 1234677889999999998777665443
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.85 E-value=8.9e-08 Score=94.50 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=117.1
Q ss_pred hhHHHHHHHHhhhhcccccccccCCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHh
Q 043250 150 ESKLIEEIANDVLKRLDSTFQSENKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 150 e~~~i~~i~~~~~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
+...++.+..++....+ +..-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++
T Consensus 63 ~~~~~~~i~~~i~~~~~---~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP---PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCSC---CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC---CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45566666666654433 33446799999999999887742 112356799999999999999999998
Q ss_pred hhcccccceEEEEechhhhcc-CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH------------
Q 043250 220 KISRHFEGSYFALNVREAEET-GG-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR------------ 285 (507)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~-~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------ 285 (507)
.... .++..+....... .+ .......+ +......++.+|+||+++..
T Consensus 140 ~~~~----~~~~i~~~~l~~~~~g~~~~~~~~~---------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~ 200 (357)
T 3d8b_A 140 QSGA----TFFSISASSLTSKWVGEGEKMVRAL---------------FAVARCQQPAVIFIDEIDSLLSQRGDGEHESS 200 (357)
T ss_dssp HTTC----EEEEEEGGGGCCSSTTHHHHHHHHH---------------HHHHHHTCSEEEEEETHHHHTBC------CHH
T ss_pred HcCC----eEEEEehHHhhccccchHHHHHHHH---------------HHHHHhcCCeEEEEeCchhhhccCCCCcchHH
Confidence 7532 2222222222111 00 01111111 11122356789999999432
Q ss_pred -HHHHHHHcccCC----CCCCcEEEEEeCchhhH-hh--cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHH
Q 043250 286 -RQIESLIGCLDE----LASGSRVIITTRDKQVL-KT--CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDR 357 (507)
Q Consensus 286 -~~~~~l~~~l~~----~~~~~~iliTtR~~~~~-~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.....++..+.. ...+..||.||...... .. ......+.+...+.++..+++...+.... .....+....
T Consensus 201 ~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~l~~ 278 (357)
T 3d8b_A 201 RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ--CCLSEEEIEQ 278 (357)
T ss_dssp HHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC--BCCCHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC--CCccHHHHHH
Confidence 112333333221 12345566666544221 11 12345778999999999998877663221 1123566788
Q ss_pred HHHHhCC-ChHHHHHHHhh
Q 043250 358 AIKYAQG-VPLALKVLGCH 375 (507)
Q Consensus 358 i~~~~~G-~PLal~~~~~~ 375 (507)
+++.+.| .+-.|..+...
T Consensus 279 la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 279 IVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 9999988 56667766553
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.85 E-value=1.6e-07 Score=88.96 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=93.9
Q ss_pred CccccccchHHHHHH-------hhhc-CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 174 KGLVGVECPIEEIES-------LLCI-GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 174 ~~~vGR~~el~~l~~-------~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
..++|.+..++.+.. .+.. .....+.+.|+|++|+|||+||+.+++.....| +.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 467888887776665 2221 234567899999999999999999998753221 222211100 0001111
Q ss_pred HHHHHHHHHhcCCCCCCHHHH-HHHHcCCcEEEEEcCCCCH------------HHHHHHHcccCC---CCCCcEEEEEeC
Q 043250 246 LQKKLLSELLNDGNRRNIESQ-LNRLARKKVLIVFDDVSHR------------RQIESLIGCLDE---LASGSRVIITTR 309 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~~~~iliTtR 309 (507)
.... +..+ ......++.+|+||+++.. ..++.+...+.. .+....||.||.
T Consensus 109 ~~~~-------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 109 KCQA-------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp HHHH-------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred HHHH-------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 0000 1111 1223456889999998543 223333333221 233445677787
Q ss_pred chhhHhhc----CCceeEecCCCCh-HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 310 DKQVLKTC----WASQIYQMKELVY-ADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 310 ~~~~~~~~----~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
........ .....+.+++++. ++..+++.... ....+....+++.+.|.
T Consensus 176 ~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 176 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp CHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSCHHHHHHHHHHHTTS
T ss_pred ChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCCHHHHHHHHHHhcCC
Confidence 76544431 1246789999988 56566554422 12356678888888883
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=5e-08 Score=101.20 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=106.6
Q ss_pred ccccCCccccccchHHHHHHhhhcC---------------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEe
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIG---------------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALN 233 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 233 (507)
.|.....++|++..++.|..++... .+..+.+.|+|++|+|||+||+.+++.+. ..+...+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQN 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEEC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEe
Confidence 3444567999999999999998641 01347899999999999999999999862 1222222
Q ss_pred chhhhccCCHHHHHHHHHHHHhcCCCC-CCHHHHHHH--HcCCcEEEEEcCCCCH-----HHHHHHHcccCCCCCCcEEE
Q 043250 234 VREAEETGGIKDLQKKLLSELLNDGNR-RNIESQLNR--LARKKVLIVFDDVSHR-----RQIESLIGCLDELASGSRVI 305 (507)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~l~~~--l~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~il 305 (507)
.. ..... ......+......... ..+...... ..+++.+|+||+++.. ..+..+...+.. .+..||
T Consensus 110 ~s---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 110 AS---DVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp TT---SCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred CC---CcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 21 11111 1222222211111111 111111111 1357889999999532 112333322221 233455
Q ss_pred EEeCchh---hHhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH-HHHH
Q 043250 306 ITTRDKQ---VLKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA-LKVL 372 (507)
Q Consensus 306 iTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 372 (507)
+++.+.. +.........+.+.+++.++..+.+...+...... ...+....|++.++|.+-. +..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 5554322 22222345679999999999999887765322211 1234578899999996554 4443
No 36
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4e-08 Score=94.32 Aligned_cols=162 Identities=10% Similarity=0.037 Sum_probs=98.8
Q ss_pred ccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhcccc-----c--ceEEEEechhhhccCCHHH
Q 043250 175 GLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-----E--GSYFALNVREAEETGGIKD 245 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~ 245 (507)
.+.||+.|+++|...|.. ..+..+.+.|+|++|+|||++++.+++++.... + ..+.+. .....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHH
Confidence 489999999999988865 244567889999999999999999999875321 1 223333 222345566
Q ss_pred HHHHHHHHHhcCCC--CCCHHHHHHH---H---cCCcEEEEEcCCCCH---HHHHHHHcccCCCCCCcEEEEEeCchhh-
Q 043250 246 LQKKLLSELLNDGN--RRNIESQLNR---L---ARKKVLIVFDDVSHR---RQIESLIGCLDELASGSRVIITTRDKQV- 313 (507)
Q Consensus 246 l~~~l~~~~~~~~~--~~~~~~l~~~---l---~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iliTtR~~~~- 313 (507)
++..++.++.+... ....+.+.+. + .+++++++||+++.. +.+-.++...........||.++.....
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 77777777754422 2233333333 2 356799999999653 3333333211111122233444433211
Q ss_pred ---H-----hhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 314 ---L-----KTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 314 ---~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+ ..+ ....+.+.+++.+|..+++..++
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 111 22578999999999999998876
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=4.9e-08 Score=96.30 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=110.3
Q ss_pred cccccccCCccccccchHHHHHHhh-hcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEe-----------
Q 043250 166 DSTFQSENKGLVGVECPIEEIESLL-CIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALN----------- 233 (507)
Q Consensus 166 ~~~~~~~~~~~vGR~~el~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~----------- 233 (507)
....|.....++|.+..++.+.+++ ..+. ... +.|+|++|+||||+++.++..+.......+.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~ 83 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 83 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence 3344455577999999999999988 5332 233 8999999999999999999854222111111100
Q ss_pred ------------chhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCC
Q 043250 234 ------------VREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELA 299 (507)
Q Consensus 234 ------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~ 299 (507)
+.............+.++..+.........-.+ ..+.+++-++|||++.. ......++..+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000000000000122222222111110000000 00234677999999964 333344444433334
Q ss_pred CCcEEEEEeCchh-hHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCCh-HHHHHHHHHHhCCChHHHHHHH
Q 043250 300 SGSRVIITTRDKQ-VLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASH-TELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 300 ~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~~ 373 (507)
.+..+|++|.+.. +.+. ......+++.+++.++..+.+...+..... ... .+.+..|++.++|.+..+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677877776542 2221 124478999999999999999876532111 112 3567889999999987665544
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.77 E-value=3.3e-07 Score=89.06 Aligned_cols=183 Identities=17% Similarity=0.137 Sum_probs=107.1
Q ss_pred ccCCccccccchHHHHHHhhh----------cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLC----------IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
..-..++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~ 90 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK 90 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhc
Confidence 344678999999999988772 112234679999999999999999999875432 222222211100
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccC---CCCCCc
Q 043250 241 --GGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCLD---ELASGS 302 (507)
Q Consensus 241 --~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~---~~~~~~ 302 (507)
.........+ .......++.+|+||+++.. .....++..+. ....+.
T Consensus 91 ~~g~~~~~~~~~---------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 91 WMGESEKLVKQL---------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp TGGGHHHHHHHH---------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred ccchHHHHHHHH---------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 0111111111 11122457789999999632 11233333222 223456
Q ss_pred EEEEEeCchhhHhh---cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCC-ChHHHHHHHh
Q 043250 303 RVIITTRDKQVLKT---CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQG-VPLALKVLGC 374 (507)
Q Consensus 303 ~iliTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 374 (507)
.||.||..+..+.. -.....+.++..+.++-.+++..++.. .+..........|++.+.| .+-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~--~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD--TPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT--CCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667765432110 023467889999999999999887732 2222234567788888887 4555655554
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.77 E-value=1.2e-07 Score=94.06 Aligned_cols=198 Identities=12% Similarity=0.003 Sum_probs=108.6
Q ss_pred CCccccccchHHHHH---HhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 173 NKGLVGVECPIEEIE---SLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 173 ~~~~vGR~~el~~l~---~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
.+.|+|++..++.+. ..+..+....+.+.|+|++|+|||+||+.+++.+....+. +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 468999999877644 4444333334689999999999999999999987543221 112211111112222233322
Q ss_pred HHHHHhcC-------------------------------CCCCCHHHHHHH---------HcCC----cEEEEEcCCCC-
Q 043250 250 LLSELLND-------------------------------GNRRNIESQLNR---------LARK----KVLIVFDDVSH- 284 (507)
Q Consensus 250 l~~~~~~~-------------------------------~~~~~~~~l~~~---------l~~~----~~LlVlDdv~~- 284 (507)
.+...... ........+++. ..++ +.+|+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221100 000001111111 1222 45999999964
Q ss_pred -HHHHHHHHcccCCCCCCcEEEEEeCc------------h-hh-HhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCC
Q 043250 285 -RRQIESLIGCLDELASGSRVIITTRD------------K-QV-LKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDA 349 (507)
Q Consensus 285 -~~~~~~l~~~l~~~~~~~~iliTtR~------------~-~~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 349 (507)
.+....+...+...... .++++|.. . .+ .........+.+.+++.++..+++...+.... ..
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VE 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CC
Confidence 34455555555433333 34444431 1 11 11112335589999999999999987763222 22
Q ss_pred ChHHHHHHHHHHhC-CChHHHHHHHh
Q 043250 350 SHTELTDRAIKYAQ-GVPLALKVLGC 374 (507)
Q Consensus 350 ~~~~~~~~i~~~~~-G~PLal~~~~~ 374 (507)
...+....+++.+. |.|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44677888999998 88876655543
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.77 E-value=4.5e-08 Score=99.29 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=106.2
Q ss_pred Cccc-cccchH--HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc--eEEEEechhhhccCCHHHHHH
Q 043250 174 KGLV-GVECPI--EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 174 ~~~v-GR~~el--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 248 (507)
+.|+ |....+ ..+........ ....+.|+|++|+||||||+.+++.+...++. .+++. .. .+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~---------~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SE---------KFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HH---------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HH---------HHHH
Confidence 4566 755544 23333333222 25678999999999999999999987555432 23333 11 1222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchh---------hH
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQ---------VL 314 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~---------~~ 314 (507)
.+...+.. .....+...+..++.+|+|||++.. ...+.++..+.. ...|..||+||.+.. +.
T Consensus 174 ~~~~~~~~----~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 174 DLVDSMKE----GKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHHHHHHT----TCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHHHHHHc----ccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 33332221 1233455555546779999999432 222333332211 135677888887632 12
Q ss_pred hhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 315 KTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 315 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
..+.....+.+++++.++..+++...+..... ....+....|++.++|++--+..+.
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 22222357899999999999999877632111 1123457788999999987665443
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.71 E-value=2.7e-07 Score=89.84 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred CCccc-cccch--HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 173 NKGLV-GVECP--IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 173 ~~~~v-GR~~e--l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
.+.|+ |.... ...+..++.........+.|+|++|+||||||+.+++.+...-...+++. .. .+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHHH
Confidence 35565 64443 33444544433223457899999999999999999997654322233443 11 11222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchhh---------Hh
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQV---------LK 315 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~ 315 (507)
+...+.. .....+...+. ++.+|+||++... ...+.+...+.. ...+..||+||..... ..
T Consensus 80 ~~~~~~~----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 80 MVEHLKK----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS 154 (324)
T ss_dssp HHHHHHH----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH
T ss_pred HHHHHHc----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh
Confidence 2222211 12233333333 3669999999532 122223222210 1245578887764321 11
Q ss_pred hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHH
Q 043250 316 TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKV 371 (507)
Q Consensus 316 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 371 (507)
.+.....+++++ +.++..+++...+.... .....+....+++.+ |++-.+..
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~~~~~~~~--~~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIKEKLKEFN--LELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHC-SSHHHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhC-CCHHHHHH
Confidence 122236789999 99999999988763222 223357788899999 88765433
No 42
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.69 E-value=4.4e-07 Score=85.27 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=100.1
Q ss_pred CccccccchHHHHHHhhhc---C-------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC-C
Q 043250 174 KGLVGVECPIEEIESLLCI---G-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG-G 242 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~ 242 (507)
+.++|.+..++.|.+++.. . ....+.+.|+|++|+|||+||+.+++.....| +.+ +........ .
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhccC
Confidence 5688888888777665431 1 12345688999999999999999998764322 222 222111110 0
Q ss_pred H-HHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-----------------HHHHHHHcccCCC--CCCc
Q 043250 243 I-KDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-----------------RQIESLIGCLDEL--ASGS 302 (507)
Q Consensus 243 ~-~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~l~~~--~~~~ 302 (507)
. ......+ +.......+.+|+||+++.. ..+..++..+... ..+.
T Consensus 82 ~~~~~~~~~---------------~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 82 LGAARVRSL---------------FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp HHHHHHHHH---------------HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred hhHHHHHHH---------------HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 0 0011111 12222356899999999754 1133343332221 2355
Q ss_pred EEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHHHHh
Q 043250 303 RVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKVLGC 374 (507)
Q Consensus 303 ~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 374 (507)
.||.||....... .. .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+..
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 6677776543221 11 23467889999999999998876632221 22222234678888887754 5554443
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.68 E-value=3.8e-07 Score=92.35 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=107.1
Q ss_pred ccCCccccccchH---HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPI---EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
..-+.++|.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|. -+. . ...+...+.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~-a----~~~~~~~ir 92 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS-A----VTSGVKEIR 92 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE-T----TTCCHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE-e----ccCCHHHHH
Confidence 3446799999888 6777777643 3467999999999999999999987644321 111 1 112222221
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEE-EeCchhh---HhhcCCce
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVII-TTRDKQV---LKTCWASQ 321 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ili-TtR~~~~---~~~~~~~~ 321 (507)
.++... ......+++.+|+||+++.. .+.+.|+..+.. ....+|. ||.+... ........
T Consensus 93 -~~~~~a-----------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 93 -EAIERA-----------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp -HHHHHH-----------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred -HHHHHH-----------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCcee
Confidence 111111 01112467889999999643 233344444432 2334444 5544421 11123456
Q ss_pred eEecCCCChHHHHHHHHHhhcCCC-----CCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 322 IYQMKELVYADAHKLFCQCAFGGD-----HPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 322 ~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
++.+.+++.++..+++........ .......+..+.+++.++|.+-.+..+.
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 889999999999999988763311 1122456778899999999987655443
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.67 E-value=1.4e-06 Score=85.86 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=104.4
Q ss_pred cCCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 172 ENKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
.-..++|.+..++.|...+.. .....+.|.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~- 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK- 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh-
Confidence 346789999999999887631 11224568899999999999999999976432 222222111100
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCHH-------------HHHHHHcccC---CCCCCcEE
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHRR-------------QIESLIGCLD---ELASGSRV 304 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~~~i 304 (507)
..+. ....+..+.. ....++.+|+||+++... ....++..+. ....+..|
T Consensus 124 ------------~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 124 ------------WMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp ------------C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred ------------hcch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 0000 0001111222 224578999999996421 1233333222 11345556
Q ss_pred EEEeCchhhHh-h--cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCC-ChHHHHHHHh
Q 043250 305 IITTRDKQVLK-T--CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQG-VPLALKVLGC 374 (507)
Q Consensus 305 liTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 374 (507)
|.||..+..+. . -.....+.+...+.++-.+++..+..... ..........|++.+.| .+-.|..+..
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--SVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66775542211 1 13456788999999999999987763221 11234567888899988 4555665554
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.5e-06 Score=84.38 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=104.3
Q ss_pred CCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc--
Q 043250 173 NKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET-- 240 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-- 240 (507)
-+.++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+.......
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhh
Confidence 35688888888888765521 1123467999999999999999999987621 11222211111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccCC---CCCCcEE
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCLDE---LASGSRV 304 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~---~~~~~~i 304 (507)
.........++ ......++.+|+||+++.. .....++..+.. ...+..|
T Consensus 88 g~~~~~~~~lf---------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 88 GESEKLVKNLF---------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp CSCHHHHHHHH---------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred hHHHHHHHHHH---------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 01111111111 1122457899999999643 112333333321 1344556
Q ss_pred EEEeCchhhHh-hc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHHHhh
Q 043250 305 IITTRDKQVLK-TC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVLGCH 375 (507)
Q Consensus 305 liTtR~~~~~~-~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~ 375 (507)
|.||..+.... .+ .....+.++..+.++-.+++..+.... +..........|++.+.|+ +-.|..+...
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTT--QNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTC--CBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 66665442211 11 344678899999999999998776222 1222356678889999887 5556666543
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.64 E-value=1.3e-06 Score=88.60 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=108.6
Q ss_pred ccCCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
..-+.++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~---- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD---- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH----
Confidence 3446799999999988876621 1123467999999999999999999987621 1222221111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH-------------HHHHHHHcccCCC---CCCcE
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR-------------RQIESLIGCLDEL---ASGSR 303 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~---~~~~~ 303 (507)
+... ..+ .....+..+.... ...+.+|+||+++.. .....++..+... ..+..
T Consensus 204 -----l~~~----~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -----LVSK----WLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -----HHhh----hcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 0000 001 1123344443333 357899999999753 2244555554331 34566
Q ss_pred EEEEeCchhhHh-h--cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHHHh
Q 043250 304 VIITTRDKQVLK-T--CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVLGC 374 (507)
Q Consensus 304 iliTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 374 (507)
||.||..+..+. . -.....+.+...+.++-.+++..+.... +..........|++.+.|. +-.|..+..
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST--QNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS--CEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 676776543211 1 1234578888889888888888776322 1112345677888888884 545555544
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.63 E-value=2.4e-07 Score=81.94 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=41.6
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999998864 33456789999999999999999987643
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=1.1e-07 Score=92.67 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=103.9
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
|...+.++|.+..++.+.+++..+ .....+.++|++|+|||++|+.+++.+... .+.+. .. ...... ...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~~----~~~~~~-i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-GS----DCKIDF-VRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-TT----TCCHHH-HHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-cc----ccCHHH-HHH
Confidence 344578999999999999999743 234678899999999999999999876321 22222 11 122222 222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH---HHHHHHcccCCCCCCcEEEEEeCchhhH-hhc-CCceeEe
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR---QIESLIGCLDELASGSRVIITTRDKQVL-KTC-WASQIYQ 324 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iliTtR~~~~~-~~~-~~~~~~~ 324 (507)
.+........ ..+++.+++||+++... ....+...+.....+.++|+||....-. +.. .....++
T Consensus 92 ~~~~~~~~~~----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 92 PLTNFASAAS----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HHHHHHHBCC----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred HHHHHHhhcc----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 2221111000 12367899999997643 4444444433223566788887665321 100 1235799
Q ss_pred cCCCChHHHHHH-------HHHhhcCCCCCCCChH-HHHHHHHHHhCCChHHHH
Q 043250 325 MKELVYADAHKL-------FCQCAFGGDHPDASHT-ELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 325 l~~L~~~ea~~L-------~~~~~~~~~~~~~~~~-~~~~~i~~~~~G~PLal~ 370 (507)
+++++.++-.++ +...+.... ..... +....+++.++|.+..+.
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHhCCCCHHHHH
Confidence 999998874333 222221111 11123 678889999988876433
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.63 E-value=8.8e-07 Score=88.45 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=104.1
Q ss_pred ccccCCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh
Q 043250 169 FQSENKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE 238 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 238 (507)
++..-..++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.++++... .++..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhh
Confidence 344456899999999999987732 0122467999999999999999999987533 22222221111
Q ss_pred cc--CCHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCH-------------HHHHHHHcccC----CC
Q 043250 239 ET--GGIKDLQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHR-------------RQIESLIGCLD----EL 298 (507)
Q Consensus 239 ~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~----~~ 298 (507)
.. ....... ..+.. .....+.+|+||+++.. .....++..+. ..
T Consensus 186 ~~~~g~~~~~~----------------~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 SKYVGEGEKLV----------------RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ------CHHHH----------------HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred ccccchHHHHH----------------HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 00 0001111 11111 12346689999999633 11222222221 11
Q ss_pred CCCcEEEEEeCchhhHh-h--cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHHHHh
Q 043250 299 ASGSRVIITTRDKQVLK-T--CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKVLGC 374 (507)
Q Consensus 299 ~~~~~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 374 (507)
.....||.||.....+. . ......+.+...+.++-.+++...+.... .....+....+++.+.|..- .|..+..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23445666665432211 1 12335688999999999999987763221 22335567889999888544 6655544
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.63 E-value=5.5e-07 Score=86.38 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=104.5
Q ss_pred ccccCCccccccchHHHHHHhhhcC----------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIG----------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE 238 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 238 (507)
++..-..++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++...... +...+.....
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~ 91 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLT 91 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHh
Confidence 3444568999999999998876321 1234678999999999999999999876432 2222221111
Q ss_pred c--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHccc---CCC--
Q 043250 239 E--TGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCL---DEL-- 298 (507)
Q Consensus 239 ~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l---~~~-- 298 (507)
. ..........++ .......+.+|+||+++.. .....++..+ ...
T Consensus 92 ~~~~~~~~~~~~~~~---------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 92 SKYVGDGEKLVRALF---------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp SSSCSCHHHHHHHHH---------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred hcccchHHHHHHHHH---------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 1 011111111111 1122456789999999532 1122232222 111
Q ss_pred CCCcEEEEEeCchhhHh-hc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHHHHh
Q 043250 299 ASGSRVIITTRDKQVLK-TC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKVLGC 374 (507)
Q Consensus 299 ~~~~~iliTtR~~~~~~-~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 374 (507)
+.+..||.||..+.... .. .....+.+...+.++...++........ .....+....+++.+.|++- .|..+..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 13455666776543211 10 2335678888888888888877653221 12234667889999998875 6655543
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.62 E-value=4e-07 Score=87.87 Aligned_cols=149 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred ccccccchHHHHHHhhhc-------------CCCCceEEEEeccccchhhHHHHHHHhhhccccc---ceEEEEechhhh
Q 043250 175 GLVGVECPIEEIESLLCI-------------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFALNVREAE 238 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~ 238 (507)
.++|.+..++.|.+++.. .......+.|+|++|+|||+||+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478888888888765532 1234557899999999999999999987643211 122222221111
Q ss_pred cc--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC-----------CHHHHHHHHcccCCCCCCcEEE
Q 043250 239 ET--GGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS-----------HRRQIESLIGCLDELASGSRVI 305 (507)
Q Consensus 239 ~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~~~~il 305 (507)
.. ....... ..+.... ++.+|+||+++ .......++..+.....+..+|
T Consensus 112 ~~~~g~~~~~~----------------~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 112 GQYIGHTAPKT----------------KEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp CSSTTCHHHHH----------------HHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred hhcccccHHHH----------------HHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 00 0000001 1111111 34599999997 4444556655554445567788
Q ss_pred EEeCchhhHh------hc--CCceeEecCCCChHHHHHHHHHhh
Q 043250 306 ITTRDKQVLK------TC--WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 306 iTtR~~~~~~------~~--~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+||....... .+ .....+.+++++.++..+++...+
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 8876432110 00 123678999999999999997766
No 52
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=1.2e-06 Score=85.91 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=106.4
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
..-..++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.+++.+... +...+.-.+. +...+...+. .
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~ir-~ 95 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVVR-N 95 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHHH-T
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHHH-H
Confidence 33456889988899998888743 22338999999999999999999876432 2211211111 1111222221 1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchh-hHhh-cCCceeEec
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQ-VLKT-CWASQIYQM 325 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l 325 (507)
....+..... .+.+.+-++|+|+++. ....+.++..+......+.+|++|.... +.+. ......+.+
T Consensus 96 ~i~~~~~~~~---------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 96 QIKDFASTRQ---------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHHHHHHBCC---------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHHHHhhcc---------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 1111110000 0123467899999953 3344444443333345566777665432 2111 123457899
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHH
Q 043250 326 KELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKV 371 (507)
Q Consensus 326 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 371 (507)
.+++.++..+.+...+-... .....+..+.+++.++|.+--+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEK--LKLSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTT--CCBCHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999988876652211 123356788899999999875433
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.57 E-value=1.1e-06 Score=84.39 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=100.3
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 173 NKGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
-+.++|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++..... ++..+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~------- 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG------- 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECH-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEh-------
Confidence 35689999988888876642 12345678999999999999999999876422 222211
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCHHH----------------HHHHHcccCC--CCCCc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHRRQ----------------IESLIGCLDE--LASGS 302 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~~~ 302 (507)
..+.. ...+.. ...+..+.. .....+.+|+||+++.... ...++..+.. ...+.
T Consensus 83 --~~l~~----~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 --PELLT----MWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp --HHHHH----HHHTTC-TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred --HHHHh----hhcCch-HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 11111 111111 122333332 2345789999999974321 2334333321 12356
Q ss_pred EEEEEeCchhhH-hh-c---CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH
Q 043250 303 RVIITTRDKQVL-KT-C---WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 303 ~iliTtR~~~~~-~~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 368 (507)
.||.||..+... +. . .....+.++..+.++-.+++....-........ ....++..+.|.|-+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 677777655322 11 1 234678999999999889887766322211111 134556667776643
No 54
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.56 E-value=3.2e-06 Score=82.50 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=102.0
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cceEEEEechhhhc
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSYFALNVREAEE 239 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~~~~~~ 239 (507)
...+.+...+..+ .-...+.++|++|+|||++|+.+++.+.... +...++... ....
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~ 86 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGKN 86 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTCS
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccCC
Confidence 3455666666532 2355789999999999999999998654321 111222100 0000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 240 TGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 240 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
...+.. +..+.+.+ .+++-++|+|+++. .+....++..+....+++.+|++|.+..
T Consensus 87 ~~~i~~-----------------ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 TLGVDA-----------------VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SBCHHH-----------------HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCHHH-----------------HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 011111 11222222 24678999999964 4455666666654455677777776553
Q ss_pred -hHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 313 -VLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 313 -~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
+.+. ......+++.+++.++..+++.... ....+.+..+++.++|.|..+..+.
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3222 2345789999999999999998765 1234567889999999997665443
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=1.2e-05 Score=78.43 Aligned_cols=257 Identities=13% Similarity=0.118 Sum_probs=135.9
Q ss_pred CCccccccchHHHHHHhhhcC---CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIG---SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ... ... .....++. .
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~--~~~~~~l~-~ 95 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPV--LVKQGDMA-A 95 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTT--CCSHHHHH-H
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chH--hcCHHHHH-H
Confidence 356889888888887776532 223456899999999999999999997643221 110 000 01111110 1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCC--------C----------CCcEEE-EEe
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDEL--------A----------SGSRVI-ITT 308 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~--------~----------~~~~il-iTt 308 (507)
+...+ .++.++++|++.. ....+.+...+... + +...++ .|+
T Consensus 96 ----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 96 ----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp ----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred ----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 11111 2344777888743 22233332211110 0 112233 344
Q ss_pred CchhhHhhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh------CC--
Q 043250 309 RDKQVLKTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL------CG-- 378 (507)
Q Consensus 309 R~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l------~~-- 378 (507)
+...+.... .......+++.+.++..+++...+-.. ......+.+..|++.+.|.|-.+..+...+ .+
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~--~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~ 236 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM--DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKAD 236 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 433221111 123458899999999999998766221 123446778999999999997654443322 11
Q ss_pred -CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhcccc--CCCCCHHHHHHHHHHcCCCchhhHH-HHhhC
Q 043250 379 -RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACL--LEGTHRDYVISCLDACGFEPKIELS-VLECK 454 (507)
Q Consensus 379 -~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f--~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~ 454 (507)
-+.+....++..+.. .-..|+...+..+..++-. ..+...+.+...+..+....+...+ .|...
T Consensus 237 ~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~ 304 (334)
T 1in4_A 237 RINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQA 304 (334)
T ss_dssp SBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHT
T ss_pred CcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 122333333333211 1124555556666554433 2235566666555432111122222 78899
Q ss_pred CceeeCCCCeEEec
Q 043250 455 SLINLDAFDQIRMH 468 (507)
Q Consensus 455 sLi~~~~~~~~~mH 468 (507)
|+|+....|+.-..
T Consensus 305 g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 305 GFLARTPRGRIVTE 318 (334)
T ss_dssp TSEEEETTEEEECH
T ss_pred CCeecccccHHhhH
Confidence 99998877776443
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.42 E-value=4.8e-07 Score=76.83 Aligned_cols=113 Identities=16% Similarity=0.051 Sum_probs=64.5
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 175 GLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++.....-...+ +. .........
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~-~~~~~~~~~------------ 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR-ELTPDNAPQ------------ 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE-ECCTTTSSC------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE-CCCCCcchh------------
Confidence 5799999999999887542233345789999999999999999986432211222 33 222211111
Q ss_pred hcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 255 LNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
...+.... ..-+|+||+++. .+....++..+.......++|.||..+
T Consensus 68 --------~~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 68 --------LNDFIALA--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --------HHHHHHHH--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --------hhcHHHHc--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11111111 234789999964 333344444443334456787777654
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.42 E-value=6.1e-06 Score=84.37 Aligned_cols=180 Identities=15% Similarity=0.130 Sum_probs=101.8
Q ss_pred CccccccchHHHHHHhhhcC-----------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 174 KGLVGVECPIEEIESLLCIG-----------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
..++|.+..+++|.+++... ....+.+.|+|++|+|||+||+.+++.... .++..+........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~- 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL- 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSC-
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhh-
Confidence 46899999999998877532 234567899999999999999999987632 22322222221110
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccC--CCCCCcEEEEE
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCLD--ELASGSRVIIT 307 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~--~~~~~~~iliT 307 (507)
.......+ . ..+.....+++.+|+||+++.. .....|+..+. ....+..||.|
T Consensus 279 ~g~~~~~~-~-----------~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaa 346 (489)
T 3hu3_A 279 AGESESNL-R-----------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (489)
T ss_dssp TTHHHHHH-H-----------HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred cchhHHHH-H-----------HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEe
Confidence 00000000 0 0122333567899999999311 11233333322 11345566667
Q ss_pred eCchhh-Hhh----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHHH
Q 043250 308 TRDKQV-LKT----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVLG 373 (507)
Q Consensus 308 tR~~~~-~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 373 (507)
|..+.. ... ......+.+...+.++-.++|..++........ .....+++.+.|+ +-.|..+.
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHH
Confidence 765532 111 123457899999999999999887632221111 1245566677664 54455443
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.40 E-value=3.3e-06 Score=86.29 Aligned_cols=147 Identities=13% Similarity=0.132 Sum_probs=83.9
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------cceEEEEechhhhccCCHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 245 (507)
..+.++||+.+++.+...+... ...-+.|+|++|+|||+||+.+++.+...+ ...++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 3457999999999999998743 234568999999999999999999864322 1122221111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhH------h-hc
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVL------K-TC 317 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~------~-~~ 317 (507)
... .......+..+...+ ..++.+|++| ...+....+.+.+. ....++|.+|...... + ..
T Consensus 246 ------~~~-~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 ------TKY-RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ------ccc-cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000 000122333333333 3567899999 22232333444433 2345666666544311 0 01
Q ss_pred CCceeEecCCCChHHHHHHHHHhh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.....+.+++++.++..+++....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 133569999999999999998655
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=9.8e-06 Score=79.75 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=100.7
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc-cC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE-TG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 241 (507)
+.+.|.+...++|.+.+.- +-..++-|.++|+||+|||.||++++++....| +......... ..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 5678899998888775532 223457799999999999999999999765432 2222222211 11
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCCc
Q 043250 242 -GIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASGS 302 (507)
Q Consensus 242 -~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~ 302 (507)
.....++.++.. .-...+++|+||+++.. ..+..++..+... ..+.
T Consensus 224 Gese~~vr~lF~~---------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 224 GEGSRMVRELFVM---------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp THHHHHHHHHHHH---------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred chHHHHHHHHHHH---------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 112222222221 22457899999999631 1233444443322 3344
Q ss_pred EEEEEeCchhhH-hh----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 303 RVIITTRDKQVL-KT----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 303 ~iliTtR~~~~~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.||.||..+..+ +. ......+.++..+.++-.++|..+.-........ ....+++.+.|+-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 566677554332 11 1346789999999999899998776322211111 1566777887753
No 60
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.5e-05 Score=79.71 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=100.2
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc-c
Q 043250 173 NKGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE-T 240 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 240 (507)
-+.+.|-+..+++|.+.+.- +-..++-|.++|+||+|||.||+++++..... ++......... .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc
Confidence 35678999988888775532 22346789999999999999999999976543 23332222211 1
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCC--CCCC
Q 043250 241 GG-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDE--LASG 301 (507)
Q Consensus 241 ~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~ 301 (507)
.+ .....+.++. ..-...+++|++|+++.. ..+..++..+.. ...+
T Consensus 256 ~Gese~~ir~~F~---------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 256 IGESARIIREMFA---------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp SSHHHHHHHHHHH---------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred chHHHHHHHHHHH---------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 11 1112222211 122457999999999631 113344444322 1345
Q ss_pred cEEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 302 SRVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 302 ~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..||.||..+..+. .+ .....+.++..+.++-.++|..+.-........ ....+++.+.|+-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 56777776554322 11 134578888888888888887766332211111 1456777777753
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.26 E-value=2.9e-06 Score=93.35 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=82.5
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------cceEEEEechhhhc----cC
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFALNVREAEE----TG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~----~~ 241 (507)
..+.++||+.++..+...|... ..+.+.|+|++|+|||+||+.+++.+.... ...++..+...... ..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g 245 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG 245 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccch
Confidence 4467999999999999998743 234478999999999999999999763311 22333322211110 00
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHc--CCcEEEEEcCCCCHH---------H-HHHHHcccCCCCCCcEEEEEeC
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRLA--RKKVLIVFDDVSHRR---------Q-IESLIGCLDELASGSRVIITTR 309 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~~~iliTtR 309 (507)
..... +..+...+. +++.+|+||+++... . ...+.+.+. ..+..+|.+|.
T Consensus 246 ~~~~~----------------l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~ 307 (854)
T 1qvr_A 246 EFEER----------------LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATT 307 (854)
T ss_dssp CHHHH----------------HHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEEC
T ss_pred HHHHH----------------HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecC
Confidence 01111 122222232 368999999996532 1 111222222 23345665554
Q ss_pred chhh-----Hhhc-CCceeEecCCCChHHHHHHHHHh
Q 043250 310 DKQV-----LKTC-WASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 310 ~~~~-----~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
.... ...+ .....+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 4322 1111 12345899999999999998643
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4e-05 Score=76.51 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=99.0
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc-cC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE-TG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 241 (507)
..+.|.+...++|.+.+.- +-..++-|.++|+||+|||.||++++++....| +......... ..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 4688999998888875421 224577899999999999999999999865432 2222222211 11
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCCc
Q 043250 242 G-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASGS 302 (507)
Q Consensus 242 ~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~ 302 (507)
+ ....++.++. ..-...+++|++|+++.. ..+..++..+... ..+.
T Consensus 285 Gesek~ir~lF~---------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 285 GEGARMVRELFE---------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp SHHHHHHHHHHH---------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred CHHHHHHHHHHH---------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 1 1122222222 122457999999999632 1123333333221 2344
Q ss_pred EEEEEeCchhhH-hh----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 303 RVIITTRDKQVL-KT----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 303 ~iliTtR~~~~~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
.||.||-.+..+ +. ......+.++..+.++-.++|..+.-.-...... ....|++.|.|+
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~Gf 414 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNS 414 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCC
Confidence 556677544331 11 1356788999999988899988776322211111 145677777775
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=1.8e-05 Score=73.95 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=95.7
Q ss_pred ccCCccccccchHHHHHHhhhc---C-------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLCI---G-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
..-+.++|.+..++++.+.+.. . ....+-+.|+|++|+|||+||+.+++.....| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3446789998888777664421 0 11244588999999999999999998764322 2222 1111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCC--CCCC
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQL-NRLARKKVLIVFDDVSHR----------------RQIESLIGCLDE--LASG 301 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~ 301 (507)
. .+ .....+..+. ......+.++++|+++.. ..+..++..+.. ...+
T Consensus 85 ~-------------~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 F-------------VG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp C-------------CC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred h-------------hh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 00 0000111122 223446789999998321 123334333221 1234
Q ss_pred cEEEEEeCchhhH-hhc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCC-ChHHHHHH
Q 043250 302 SRVIITTRDKQVL-KTC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQG-VPLALKVL 372 (507)
Q Consensus 302 ~~iliTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 372 (507)
..||.||...... +.. .....+.++..+.++-.+++..+.-.....+. .....++..+.| ++--|..+
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 5667777655321 111 23457888888888888888766522111111 113456667777 66555544
No 64
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.24 E-value=2.4e-06 Score=75.27 Aligned_cols=114 Identities=24% Similarity=0.193 Sum_probs=60.5
Q ss_pred chHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHHHHHHHHhcCC
Q 043250 181 CPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELLNDG 258 (507)
Q Consensus 181 ~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 258 (507)
..++.+.+++..- ......++|+|++|+|||||++.++..+.. .-....++. ..++...+........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCch
Confidence 3344444444321 123568999999999999999999987752 222233333 2223333332222211
Q ss_pred CCCCHHHHHHHHcCCcEEEEEcCCCC----HH---HHHHHHcccCCCCCCcEEEEEeCch
Q 043250 259 NRRNIESQLNRLARKKVLIVFDDVSH----RR---QIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 259 ~~~~~~~l~~~l~~~~~LlVlDdv~~----~~---~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
.. .+.+.+. ++-+||||++.. .. .+..++.... ..+..+|+||...
T Consensus 91 ~~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 DT----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYS 143 (180)
T ss_dssp CS----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCC
T ss_pred HH----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 11 2333333 455889999962 21 2222222211 2567788888754
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.22 E-value=1e-05 Score=77.75 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHhhhc------------CCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 174 KGLVGVECPIEEIESLLCI------------GSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999988888877643 011245688999999999999999998763
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.6e-05 Score=79.39 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=99.0
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc-c
Q 043250 173 NKGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE-T 240 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 240 (507)
-+.+.|-+...++|.+.+.. +-..++-|.++|+||+|||.||++++++.... ++......... .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhcc
Confidence 35788999998888775421 22346789999999999999999999976443 33332222211 1
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCCCC--CC
Q 043250 241 GG-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDELA--SG 301 (507)
Q Consensus 241 ~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~~ 301 (507)
.+ .....+.++.. .-...+++|++|+++.. ..+..++..+.... .+
T Consensus 256 vGese~~ir~lF~~---------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 256 IGEGAKLVRDAFAL---------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp SSHHHHHHHHHHHH---------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred cchHHHHHHHHHHH---------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 11 11222222221 12346899999999521 11334454444322 34
Q ss_pred cEEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 302 SRVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 302 ~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
..||.||..+..+. .+ .....+.++..+.++-.++|..+.-.-...... ....|++.+.|+
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 45666776554322 11 235678899888888888887665221111111 145677777764
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.20 E-value=1.1e-05 Score=87.84 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=88.6
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEEechhhhc----cC
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFALNVREAEE----TG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~----~~ 241 (507)
..+.++||+.+++.+.+.|... ....+.|+|++|+|||++|+.+++.+... ....++..+...... ..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 3467999999999999998743 33457899999999999999999876321 123333322211110 01
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHc-CCcEEEEEcCCCCH----------HHHHHHHcccCCCCCCcEEEEEeCc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRLA-RKKVLIVFDDVSHR----------RQIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
.....+ ..+.+.+. .++.+|+||+++.. .....++..+.. .....+|.+|..
T Consensus 262 ~~e~~l----------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 262 DFEKRF----------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp CHHHHH----------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred hHHHHH----------------HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 111111 11223332 35789999999643 223333333222 244566666654
Q ss_pred hhhHhh------c-CCceeEecCCCChHHHHHHHHHhh
Q 043250 311 KQVLKT------C-WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 311 ~~~~~~------~-~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+..... + .....+.+++++.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 0 122468999999999988887644
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.19 E-value=5.9e-06 Score=74.23 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred CCccccccc----hHHHHHHhhhcCCCC--ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH
Q 043250 173 NKGLVGVEC----PIEEIESLLCIGSEG--VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 173 ~~~~vGR~~----el~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
-+.|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+.+++.........+++. . ..+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~-~---------~~~ 93 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY-V---------PEL 93 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-H---------HHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-h---------HHH
Confidence 356776553 334445555432221 267899999999999999999998765544555554 1 122
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS 283 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 283 (507)
...+..... ......+...+.+.. +|||||++
T Consensus 94 ~~~~~~~~~----~~~~~~~~~~~~~~~-~lilDei~ 125 (202)
T 2w58_A 94 FRELKHSLQ----DQTMNEKLDYIKKVP-VLMLDDLG 125 (202)
T ss_dssp HHHHHHC-------CCCHHHHHHHHHSS-EEEEEEEC
T ss_pred HHHHHHHhc----cchHHHHHHHhcCCC-EEEEcCCC
Confidence 233322211 112333444444333 89999994
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2.5e-05 Score=77.95 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=92.7
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh-ccC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE-ETG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~ 241 (507)
+.+.|.+...++|.+.+.. +-..++-+.++|+||+|||.||+++++..... ++........ ...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecchhhcccc
Confidence 5678999988888775531 22346779999999999999999999976433 2332222211 111
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCC--CCCCc
Q 043250 242 -GIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDE--LASGS 302 (507)
Q Consensus 242 -~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~~ 302 (507)
.....++.++.. .-...++++++|+++.. ..+..++..+.. ...+.
T Consensus 248 Ge~e~~ir~lF~~---------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 248 GEGPRMVRDVFRL---------------ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp SHHHHHHHHHHHH---------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred chhHHHHHHHHHH---------------HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 111222222221 22457899999999421 113334433321 23455
Q ss_pred EEEEEeCchhhH-hhc----CCceeEecCCCChH-HHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 303 RVIITTRDKQVL-KTC----WASQIYQMKELVYA-DAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 303 ~iliTtR~~~~~-~~~----~~~~~~~l~~L~~~-ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
.||.||..+..+ +.+ .....+++..++.. +-.++|..+.-.....+.. ....+++.+.|+
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~ 378 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSL 378 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTC
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCC
Confidence 667777654331 111 23456778766544 4455565554222211111 145677777765
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=6.6e-05 Score=74.21 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=97.6
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc-cC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE-TG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 241 (507)
+.+-|.+...++|.+.+.. +-...+-|.++|+||+|||.||++++++....| +......... ..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 4678899888888775531 223467899999999999999999999865432 2222222211 11
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCC--CCCCc
Q 043250 242 -GIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDE--LASGS 302 (507)
Q Consensus 242 -~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~~ 302 (507)
......+.++.. .-...+++|+||+++.. ..+..++..+.. ...+.
T Consensus 258 Gesek~ir~lF~~---------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 258 GDGPRLCRQIFKV---------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp SHHHHHHHHHHHH---------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred chHHHHHHHHHHH---------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 111222222221 22457899999998521 123334333321 13445
Q ss_pred EEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 303 RVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 303 ~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
.||.||-.+..+. .+ .....+.++..+.++-.++|..+.-.-...... ....|++.+.|+
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~Gf 387 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDL 387 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSC
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 5677776554432 22 234568888888888888887776322211111 145677777765
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.14 E-value=1.4e-06 Score=82.15 Aligned_cols=153 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred ccCCccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
.....++|.+..++.+.+.+.. +....+.+.|+|++|+|||+||+.+++.....|-. + +.......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~ 83 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM 83 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh
Confidence 3446799999999888876641 11123348899999999999999999876443211 1 11111000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEEEEEcCCCCHH-----------------HHHHHHcccCCC---C
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIES-QLNRLARKKVLIVFDDVSHRR-----------------QIESLIGCLDEL---A 299 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~~---~ 299 (507)
..+. ....+.. +.......+.+|+||+++... .+..++..+... .
T Consensus 84 -------------~~~~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 -------------FVGL-GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------------CSSS-CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------------hcch-HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0000 0111112 222334567899999995431 122233333211 1
Q ss_pred CCcEEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhh
Q 043250 300 SGSRVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 300 ~~~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
....||.||....... .. .....+.++..+.++-.+++....
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245666766553211 11 223567888999999988887765
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.14 E-value=3e-05 Score=72.83 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+.++|.+..+..+.+.+.........+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999988876654222335688999999999999999998654
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.13 E-value=1.6e-05 Score=86.41 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=84.4
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------cceEEEEechhhhccCCHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 245 (507)
.-+.++||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 3457999999999999998743 233478999999999999999999763321 122222111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH-HcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHh------h-c
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNR-LARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLK------T-C 317 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~-~ 317 (507)
.... .......+..+... ...++.+|++| ...+....+.+.+. ....++|.||....... . .
T Consensus 245 -----g~~~-~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 -----GTKY-RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----cccc-cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000 00112233333332 34578899999 22233333444443 33456666665443110 0 0
Q ss_pred CCceeEecCCCChHHHHHHHHHhh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.....+.+++++.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998654
No 74
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=2.3e-05 Score=75.02 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=88.0
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh---cccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 178 GVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI---SRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 178 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
|-+..++.|...+..+. .+.+.++|++|+|||++|..+++.. ...++....+... ....++..+ +.+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 34556777888776443 6789999999999999999998752 1123333443210 011222222 2233322
Q ss_pred hcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hhHhhcCCceeEecCCCChH
Q 043250 255 LNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QVLKTCWASQIYQMKELVYA 331 (507)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~~~~~~~~l~~L~~~ 331 (507)
...+ ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.++ .+.+..... .+++.+++.+
T Consensus 75 ~~~p-----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 75 NYSP-----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp TSCC-----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred hhcc-----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 1110 124567999999963 445566666655445667777666444 344433334 8999999999
Q ss_pred HHHHHHHHhh
Q 043250 332 DAHKLFCQCA 341 (507)
Q Consensus 332 ea~~L~~~~~ 341 (507)
+..+.+....
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 75
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.10 E-value=2.1e-05 Score=75.74 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.1
Q ss_pred CccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789999988888777542 112357999999999999999999987644
No 76
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.09 E-value=7.5e-05 Score=75.77 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCccccccchHHHHHHhhhc--C--------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc-C
Q 043250 173 NKGLVGVECPIEEIESLLCI--G--------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET-G 241 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 241 (507)
...++|.+..++++.+.... . ....+-+.|+|++|+|||+||+.++.+....| +..+....... .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 35688988887777765432 1 11234588999999999999999998764322 22222222111 1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCC--CCCCc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIES-QLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDE--LASGS 302 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~~~~~ 302 (507)
+.. . ..+.. +.....+.+.+|+||+++.. ..+..++..+.. ...+.
T Consensus 91 g~~---~------------~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 91 GVG---A------------ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp THH---H------------HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ccc---H------------HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 100 0 00111 22334567899999999431 123444433321 12455
Q ss_pred EEEEEeCchhhHh-h-c---CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 303 RVIITTRDKQVLK-T-C---WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 303 ~iliTtR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.||.||..+..+. . . .....+.++..+.++-.+++..+.-........ ....+++.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 6777776654322 1 1 234578899888888888887666322211111 1455788888887
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.07 E-value=1.7e-05 Score=76.05 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999988876533334568899999999999999999854
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.03 E-value=1.9e-06 Score=72.97 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
-.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999998887754222234488999999999999999987543
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.96 E-value=0.00028 Score=71.73 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=57.7
Q ss_pred EEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEe---------Cc----h-hhH-hhcCCceeEecCCCChHHHHHHH
Q 043250 275 VLIVFDDVS--HRRQIESLIGCLDELASGSRVIITT---------RD----K-QVL-KTCWASQIYQMKELVYADAHKLF 337 (507)
Q Consensus 275 ~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTt---------R~----~-~~~-~~~~~~~~~~l~~L~~~ea~~L~ 337 (507)
-++++|+++ +.+....|+..+...... .+|+.| .+ + .+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 389999995 455677777666543334 344343 11 1 111 11124456899999999999999
Q ss_pred HHhhcCCCCCCCChHHHHHHHHHHh-CCChHHHHHH
Q 043250 338 CQCAFGGDHPDASHTELTDRAIKYA-QGVPLALKVL 372 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~ 372 (507)
...+-... .....+.+..|++.+ +|.|.....+
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87652111 123356678888888 7888654433
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=0.00014 Score=78.10 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=98.3
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh-ccC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE-ETG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~ 241 (507)
+.+.|.+..+++|.+.+.- +...++-|.++|++|+|||+||+.++++...+ ++..+..... ...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4678999999888876531 11346789999999999999999999876433 3333222211 111
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccCCC--CCCcEEE
Q 043250 242 G-IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCLDEL--ASGSRVI 305 (507)
Q Consensus 242 ~-~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~il 305 (507)
+ ....++.++ .......+++|+||+++.. ..+..++..+... ..+..||
T Consensus 280 gese~~lr~lF---------------~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 280 GESESNLRKAF---------------EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp THHHHHHHHHH---------------HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hHHHHHHHHHH---------------HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 111112211 1223467999999999531 1133333332211 2344456
Q ss_pred EEeCchhhH-hhc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 306 ITTRDKQVL-KTC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 306 iTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.||...... +.+ .....++++..+.++-.++|..+.-....... .....+++.+.|+-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 666554332 222 24567899999999889988876632221111 12566778887764
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.88 E-value=1.2e-05 Score=68.37 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
....++|+|++|+|||||++.++......-...+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3457999999999999999999987654322245554
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.87 E-value=0.00027 Score=65.73 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred cCCccccccchHHHHHHhhhc--C--------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 172 ENKGLVGVECPIEEIESLLCI--G--------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
..+.++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++..... ..+.+. ........
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH
Confidence 345678887766666554321 0 011233899999999999999999987642 223332 11111000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHc-CCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCCc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRLA-RKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASGS 302 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~ 302 (507)
..... ..+..+.+... ..+.++++|+++.. ..+..++..+... ....
T Consensus 90 -~~~~~-------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 90 -VGVGA-------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp -TTHHH-------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred -hhHHH-------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 00000 01111223332 45789999999422 1123333333211 1223
Q ss_pred EEEEEeCchhhHhh-----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 303 RVIITTRDKQVLKT-----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 303 ~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.++.||..+..... ......+.++..+.++-.+++....-....... .....+++.+.|+-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 34556665544321 123567889999988888888766522111111 11345666666653
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.81 E-value=0.00053 Score=64.68 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=92.2
Q ss_pred ccccCCccccccchHHHHHHhhhc--C--------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh
Q 043250 169 FQSENKGLVGVECPIEEIESLLCI--G--------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE 238 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 238 (507)
+....+.++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++..... ..+.+. .....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH
Confidence 334456788988877777654421 0 011223899999999999999999987642 223332 11111
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------------HHHHHHHcccCCCC--
Q 043250 239 ETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------------RQIESLIGCLDELA-- 299 (507)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~-- 299 (507)
... ...... .+..+.+.. ...+.++++|+++.. ..+..++..+....
T Consensus 111 ~~~-~~~~~~-------------~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 111 EMF-VGVGAA-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp HST-TTHHHH-------------HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HHH-hhHHHH-------------HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 000 000000 011122222 245789999999421 12333443333211
Q ss_pred CCcEEEEEeCchhhHh-----hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 300 SGSRVIITTRDKQVLK-----TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 300 ~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
....++.||..+..+. .......+.++..+.++-.+++..+.-....... .....++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 2233455666554322 1124557889999998888888766522111111 11345666676654
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.76 E-value=0.00012 Score=79.46 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=84.1
Q ss_pred CccccccchHHHHHHhhhcCC-------CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGS-------EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999999988887775311 12236999999999999999999997644323333333 33332221111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCC--HHHHHHHHcccCC-----------CCCCcEEEEEeCchh
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSH--RRQIESLIGCLDE-----------LASGSRVIITTRDKQ 312 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--~~~~~~l~~~l~~-----------~~~~~~iliTtR~~~ 312 (507)
...+...+ .....+|+||+++. .+....|+..+.. .....+||+||....
T Consensus 568 ----------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 00011111 23345899999953 3334444433221 123567888887311
Q ss_pred -----h----Hhh------cCCceeEecCCCChHHHHHHHHHhh
Q 043250 313 -----V----LKT------CWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 313 -----~----~~~------~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+ ... ......+.+.+|+.++..+++....
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 0 000 1233578899999988888776544
No 85
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.72 E-value=3.1e-05 Score=61.43 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=51.5
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDDQLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKIL 80 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 80 (507)
+|.+||||+.+| . .+.|...|.+.|+... | +.|+.|+++|++.++...+|+||..|+..+.
T Consensus 4 ~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~ 64 (111)
T 1eiw_A 4 EIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLAR 64 (111)
T ss_dssp CEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHT
T ss_pred eEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHHH
Confidence 589999999998 2 5555555544455333 2 5688999999999999999999999997655
Q ss_pred HHHHhCCCeEEeE
Q 043250 81 ECKHNYGQIVIPV 93 (507)
Q Consensus 81 ~~~~~~~~~v~pv 93 (507)
+ .+.+++-|
T Consensus 65 ~----~gkpIigV 73 (111)
T 1eiw_A 65 K----SSKPIITV 73 (111)
T ss_dssp T----TTCCEEEE
T ss_pred H----cCCCEEEE
Confidence 4 44444444
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.69 E-value=0.00069 Score=69.10 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred ccCCccccccchHHHHHHhhhc--C--------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLCI--G--------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
...+.++|.+..+.++.+.... . -.-.+-+.|+|++|+|||+||+.++..... ..+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHh
Confidence 3456789998887777665431 1 011334899999999999999999987642 122232 2222111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCC
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASG 301 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~ 301 (507)
. .... ..-...+ .+.. ...+.++++|+++.. ..+..++..+... ...
T Consensus 104 ~-~g~~-~~~v~~l------------fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 104 F-VGVG-AARVRDL------------FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp C-TTHH-HHHHHHH------------TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred h-hhhH-HHHHHHH------------HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 0 0000 0001111 1111 124689999999421 1234444443321 233
Q ss_pred cEEEEEeCchhhHhh-c----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 302 SRVIITTRDKQVLKT-C----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 302 ~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..++.||..+..+.. . .....+.++..+.++-.+++..++-.....+. .....++..+.|+.
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 445566666544221 1 23457889999999888888776522211111 11456777787876
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.67 E-value=0.00034 Score=76.17 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc-C
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET-G 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 241 (507)
+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++......| +.+. ....... .
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~~ 279 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKLA 279 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhhh
Confidence 5689999999999887753 123356799999999999999999998764332 2222 2111110 0
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccCC--CCCCcEEE
Q 043250 242 -GIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR-------------RQIESLIGCLDE--LASGSRVI 305 (507)
Q Consensus 242 -~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~~il 305 (507)
........+ +.......+.++++|+++.. .....++..+.. ...+..+|
T Consensus 280 g~~~~~l~~v---------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 280 GESESNLRKA---------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp THHHHHHHHH---------------HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred hhHHHHHHHH---------------HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEe
Confidence 011111111 11222346789999999311 112223222211 12345566
Q ss_pred EEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhh
Q 043250 306 ITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 306 iTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.||..+.... .+ .....+.+...+.++-.+++...+
T Consensus 345 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6665543221 11 123567888889999999887765
No 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.64 E-value=0.00082 Score=63.93 Aligned_cols=28 Identities=39% Similarity=0.547 Sum_probs=24.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.++.+.|+|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568899999999999999999998743
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.54 E-value=0.00065 Score=67.15 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+.|+|++|+|||++|+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.47 E-value=0.005 Score=57.79 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=68.6
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIV 278 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlV 278 (507)
++|+|++|+||||||+.++..... ..+.+. ....... ........ +..+.+.. ...+.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~~~~~~~-------------i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YVGESERA-------------VRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TTHHHHHH-------------HHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hhhHHHHH-------------HHHHHHHHHhcCCCeEe
Confidence 999999999999999999987543 223332 1111110 01111111 11122221 34678999
Q ss_pred EcCCCCH-------------HHHHHHHcccCCC--CCCcEEEEEeCchhhHhhc-----CCceeEecCCCChHHHHHHHH
Q 043250 279 FDDVSHR-------------RQIESLIGCLDEL--ASGSRVIITTRDKQVLKTC-----WASQIYQMKELVYADAHKLFC 338 (507)
Q Consensus 279 lDdv~~~-------------~~~~~l~~~l~~~--~~~~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~ 338 (507)
+|+++.. .....++..+... ....-++.+|..+..+... .....+.++..+.++-.+++.
T Consensus 109 ~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp EETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred eehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 9999641 1122333333211 2234456666666543211 345678899999998888887
Q ss_pred Hhh
Q 043250 339 QCA 341 (507)
Q Consensus 339 ~~~ 341 (507)
...
T Consensus 189 ~~~ 191 (274)
T 2x8a_A 189 TIT 191 (274)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.45 E-value=0.0002 Score=68.67 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=34.6
Q ss_pred hHHHHHHhhhcCCC-CceEEEEeccccchhhHHHHHHHhhhc-ccccceEEEE
Q 043250 182 PIEEIESLLCIGSE-GVCKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFAL 232 (507)
Q Consensus 182 el~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 232 (507)
.++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34445556653222 246789999999999999999999776 5444445544
No 92
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.40 E-value=0.0017 Score=71.41 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=38.9
Q ss_pred CccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999998888776531 112357899999999999999999987643
No 93
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.40 E-value=0.00056 Score=70.98 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=78.0
Q ss_pred ccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHH
Q 043250 175 GLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
.++|-+.....+...+.. .......++|+|++|+||||||+.++......|.. + ++..... ...+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i-~~~~~~~---~~~~~g~~ 154 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---I-SLGGVRD---ESEIRGHR 154 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---E-CCCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---E-Eecccch---hhhhhhHH
Confidence 467877766666543321 11245689999999999999999999876433211 1 1111100 01110000
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH------HHHHHHcccCCCC---------------CCcEEEEEeC
Q 043250 251 LSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR------QIESLIGCLDELA---------------SGSRVIITTR 309 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~---------------~~~~iliTtR 309 (507)
.... + .....+...........-+++||+++... ....++..+.... ....+|.||.
T Consensus 155 ~~~i-g-~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 155 RTYV-G-AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHHh-c-cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 0000 0 00122222222223344488899996421 1233444332110 3345666665
Q ss_pred chhhHh--hcCCceeEecCCCChHHHHHHHHHhh
Q 043250 310 DKQVLK--TCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 310 ~~~~~~--~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
...... .......+.+.+++.++-.+++..+.
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 543211 11122578999999999988887754
No 94
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.00061 Score=73.98 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999998887766531 1123478999999999999999999876
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.29 E-value=0.005 Score=59.83 Aligned_cols=156 Identities=11% Similarity=-0.056 Sum_probs=99.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc-ccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 274 (507)
-.++..++|+.|.||++.+..+.+.+. ..|.....+. .. ...++.++...+... -+-+.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~---------------plf~~~ 77 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQAM---------------SLFASR 77 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHHH---------------HHCCSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcCc---------------CCccCC
Confidence 456899999999999999999988653 2343221111 11 124444444332211 134567
Q ss_pred EEEEEcCCCC---HHHHHHHHcccCCCCCCcEEEEEeCc-------hhhHhh-cCCceeEecCCCChHHHHHHHHHhhcC
Q 043250 275 VLIVFDDVSH---RRQIESLIGCLDELASGSRVIITTRD-------KQVLKT-CWASQIYQMKELVYADAHKLFCQCAFG 343 (507)
Q Consensus 275 ~LlVlDdv~~---~~~~~~l~~~l~~~~~~~~iliTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~ 343 (507)
-++|+|+++. .+..+.+...+....+++.+|+++.. ..+.+. ......++..+++..+..+++...+-.
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 7888999854 34556666655544567777766543 233333 234678999999999999888876632
Q ss_pred CCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 344 GDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.. .....+.+..+++.++|.+..+...
T Consensus 158 ~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 158 LN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 21 2234677889999999998877654
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.26 E-value=0.0017 Score=66.26 Aligned_cols=45 Identities=24% Similarity=0.145 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999998888777533 3588999999999999999998763
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.07 E-value=0.0014 Score=59.07 Aligned_cols=45 Identities=22% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|...+..+-....++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 34444432223456899999999999999999987 2223455654
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.04 E-value=0.00039 Score=67.46 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...++|++..++.+...+..+ ..+.++|++|+|||+||+.+++.+..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357899999999888877643 34889999999999999999987644
No 99
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.94 E-value=0.0043 Score=60.31 Aligned_cols=50 Identities=20% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 183 IEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 183 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...|...|. .+-....++.|.|++|+|||||+..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455666664 23234679999999999999999999987654434566765
No 100
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.00095 Score=71.73 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=77.9
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
..+.|.+...++|.+.+.- +....+-+.++|+||+|||.||++++.+.... ++......
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~~~------ 546 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPE------ 546 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCHHH------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEeccch------
Confidence 4567788777777765532 11234568899999999999999999976432 22211111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------------HHHHHHHcccCCCC--CCcE
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------------RQIESLIGCLDELA--SGSR 303 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~~~~ 303 (507)
++....++. ...+.++.+.. ...+++|+||+++.. ..+..|+..+.... .+.-
T Consensus 547 -------l~s~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 547 -------LLTMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp -------HHTTTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred -------hhccccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 111111110 11122233333 457999999999531 01344554443222 2333
Q ss_pred EEEEeCchhh-Hhh----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 304 VIITTRDKQV-LKT----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 304 iliTtR~~~~-~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
||.||-.+.. -+. ......+.++..+.++-.++|..+.-...... . -....+++.+.|+
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-~--~dl~~la~~t~g~ 682 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-D--VDLEFLAKMTNGF 682 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC-C---------------
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC-C--CCHHHHHHhCCCC
Confidence 3435543322 111 13456778877777777777766552211111 1 1144566666654
No 101
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.92 E-value=0.00085 Score=59.03 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=60.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhc--CC---C-----------CC
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLN--DG---N-----------RR 261 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~---~-----------~~ 261 (507)
..|.|++..|.||||+|...+-+...+-..+.++.-+... ...+...++..+.-.+.. .. . ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566777777999999999998877665556666422211 112223333332100000 00 0 01
Q ss_pred CHHHHHHHHcCCc-EEEEEcCCCCH-----HHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 262 NIESQLNRLARKK-VLIVFDDVSHR-----RQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 262 ~~~~l~~~l~~~~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
.+...++.+.+.+ =|||||++... -..+.++..+........||+|+|...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1222455555544 49999998321 122333333333346678999999873
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.85 E-value=0.024 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++|.|+.|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.0016 Score=61.95 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=21.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457889999999999999999886
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.68 E-value=0.00075 Score=65.86 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=62.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEE-EEechhhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCcE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF-ALNVREAEETGGIKDLQKKLLSELLNDGNRRNI-ESQLNRLARKKV 275 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~l~~~l~~~~~ 275 (507)
.+++|+|+.|+|||||.+.+...+.......++ +.+..+....... ....+.......... +.+...|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 489999999999999999998765443222222 2211110000000 000000000011122 247788888999
Q ss_pred EEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhH
Q 043250 276 LIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVL 314 (507)
Q Consensus 276 LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~ 314 (507)
+|++|+..+.+.++.+.... ..|..||+|+-.....
T Consensus 199 villDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred EEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999998877766655442 2466688888876544
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.63 E-value=0.00084 Score=59.04 Aligned_cols=108 Identities=14% Similarity=-0.048 Sum_probs=52.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
.++.|+|++|+||||++..++++....-..+.++...... ..+...+...+.... ..........+.+.+.++.-+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~--r~~~~~i~s~~g~~~-~~~~~~~~~~~~~~~~~~~dvv 80 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS--RYHSTMIVSHSGNGV-EAHVIERPEEMRKYIEEDTRGV 80 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CCCEECC----CE-ECEEESSGGGGGGGCCTTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc--ccCcccEEecCCCce-eeEEECCHHHHHHHhcCCCCEE
Confidence 4788999999999999988887654332233333211100 000000000000000 0000122333444444456699
Q ss_pred EEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 278 VFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
++|.+.. .+.++.+..... .+..|++|.+..
T Consensus 81 iIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 81 FIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred EEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 9999843 233333332222 377889888744
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.001 Score=57.94 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.58 E-value=0.0024 Score=56.89 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=32.7
Q ss_pred ccchHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 179 VECPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 179 R~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
|+..++.|.+.+... .....+++|.|++|+|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566666655432 33467899999999999999999988654
No 108
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.58 E-value=0.0015 Score=64.28 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=35.8
Q ss_pred ccccccchHHHHHHhhh-------------cCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 175 GLVGVECPIEEIESLLC-------------IGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.++|.+..++.+...+. ......+.+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888887777777662 1111345689999999999999999998763
No 109
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.58 E-value=0.0074 Score=57.14 Aligned_cols=34 Identities=15% Similarity=-0.042 Sum_probs=27.4
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc--ccceEEEE
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFAL 232 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 232 (507)
++.|.|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999998876544 24566765
No 110
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.011 Score=57.88 Aligned_cols=52 Identities=21% Similarity=0.071 Sum_probs=36.6
Q ss_pred chHHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 181 CPIEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 181 ~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.-...|..+|. .+-....++.|+|.+|+|||+||..++......-..++|+.
T Consensus 57 TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 33455666664 22234568999999999999999999887654444677776
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.004 Score=56.33 Aligned_cols=106 Identities=20% Similarity=0.029 Sum_probs=58.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHcC
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN---RRNIESQLNRLAR 272 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~l~~~l~~ 272 (507)
...++.|+|.+|+||||++..++++...+...+..+....... +. .++...++.... ......+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 3568999999999999999999988766544444443221110 00 011111111111 1223344444433
Q ss_pred -----CcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 273 -----KKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 273 -----~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
+.-+||+|.+.. .++++.+.. +. ..+..||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 345999999942 334444322 21 1367899999843
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.39 E-value=0.007 Score=58.89 Aligned_cols=50 Identities=20% Similarity=0.060 Sum_probs=35.7
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 183 IEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 183 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...|...|. .+-....++.|.|++|+||||||.+++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445555664 23234678999999999999999999976654444566765
No 113
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.39 E-value=0.002 Score=62.72 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=35.1
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+.++|.+..++.+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899988666554433321 222388999999999999999998654
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.37 E-value=0.0017 Score=55.95 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.2
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 115
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.29 E-value=0.0037 Score=55.29 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=31.4
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.-+..+..++.. -+....+.|+|+||+|||++|..+++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346667777753 233446899999999999999999987643
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.26 E-value=0.0036 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....+++|.|++|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999988664
No 117
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.26 E-value=0.0017 Score=60.49 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=60.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE-SQLNRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~l~~~l~~~~ 274 (507)
...+++|+|+.|+|||||++.++..+...+...+++....-......... +..+..-......+. .+.+.+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----IVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----EEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----eeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 44689999999999999999998765433234444431100000000000 000000000011222 2566666677
Q ss_pred EEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 275 VLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 275 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
=+|++|+..+.+....++... ..|..|++||-+...
T Consensus 100 ~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 100 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred CEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 799999998766655544432 246668888876553
No 118
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.0055 Score=58.80 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=41.4
Q ss_pred cchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHH
Q 043250 180 ECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLS 252 (507)
Q Consensus 180 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 252 (507)
..-+..|...+ .+-....++.|.|.+|+||||||..++.....+-..++|+.. ..+..++...+..
T Consensus 52 ~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E~s~~~l~~R~~~ 117 (315)
T 3bh0_A 52 PSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------EMGKKENIKRLIV 117 (315)
T ss_dssp CCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------SSCHHHHHHHHHH
T ss_pred cCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------CCCHHHHHHHHHH
Confidence 33344555555 233345689999999999999999998765543345666541 2344455555443
No 119
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.20 E-value=0.0024 Score=55.88 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.|.|+|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 120
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.19 E-value=0.12 Score=50.44 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=35.9
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|....+.++...+..-......|.|+|.+|+||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 468999888888777664322223347799999999999999887643
No 121
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.0017 Score=56.95 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999988754443
No 122
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.17 E-value=0.023 Score=55.14 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc------cccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 232 (507)
..|..+|..+-....++.|+|++|+|||+||..++..... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455555433345678999999999999999999886432 223566665
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.14 E-value=0.0041 Score=54.62 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.2
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..|+|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999997754
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0028 Score=56.31 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|.|++|+||||+++.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.12 E-value=0.0052 Score=58.14 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.4
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.+...+|+|.|++|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999999886643
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.11 E-value=0.0029 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.6
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 127
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.08 E-value=0.0038 Score=57.48 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=28.2
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.++...+.........|+|.|++|+||||+|+.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344443333223345689999999999999999998765
No 128
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.06 E-value=0.0028 Score=54.70 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 54
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.02 E-value=0.0058 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998765
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.00 E-value=0.0044 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 131
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.95 E-value=0.024 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE 226 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 226 (507)
+.+.|.|.+|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999887654433
No 132
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.89 E-value=0.0042 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 133
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.88 E-value=0.0034 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.|.|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999875
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.88 E-value=0.0032 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998653
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.85 E-value=0.0041 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.389 Sum_probs=23.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..|+|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 136
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.008 Score=52.61 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987654
No 137
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.85 E-value=0.017 Score=55.63 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=42.9
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
.|...-...|...+. +-....++.|.|.+|+||||||..++......-..+.|+. . ..+..++...++..
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-----Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-----EMSAEQLALRALSD 96 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-----SSCHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-----CCCHHHHHHHHHHH
Confidence 333344445555553 2234568999999999999999999987654333445544 1 23455555555443
No 138
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.84 E-value=0.0075 Score=57.00 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|.|.|++|+||||+|+.++.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 139
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.84 E-value=0.0044 Score=54.46 Aligned_cols=25 Identities=44% Similarity=0.389 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999875
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.83 E-value=0.0034 Score=55.87 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|+|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.82 E-value=0.0039 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=18.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988654
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.78 E-value=0.0063 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|+|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0051 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+++|.|++|+||||||+.++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999865
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.76 E-value=0.0062 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999764
No 145
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.74 E-value=0.0046 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+++|+|++|+|||||++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998754
No 146
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.74 E-value=0.0093 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999876543
No 147
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0054 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.72 E-value=0.0052 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 149
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.72 E-value=0.004 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
++|+|+|++|+||||+|+.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999875
No 150
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.71 E-value=0.0055 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999988653
No 151
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.71 E-value=0.0058 Score=56.57 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999998654
No 152
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.70 E-value=0.0075 Score=54.04 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 153
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.70 E-value=0.0085 Score=51.50 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++++|.|.+|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999877554
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.68 E-value=0.0049 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|+|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.65 E-value=0.0068 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999986
No 156
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.64 E-value=0.0065 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.64 E-value=0.0059 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998865
No 158
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.63 E-value=0.036 Score=65.04 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=35.4
Q ss_pred HHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|..+|. .+-...+.+.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555554 22234678999999999999999999987766555667765
No 159
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.63 E-value=0.0048 Score=55.06 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..++++|+|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346799999999999999999998763
No 160
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.62 E-value=0.0056 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|++|+||||+|+.+++++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.0091 Score=54.70 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=28.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++.|.|++|+|||||+..++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3568999999999999999998876544434556654
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.61 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..|+|+|++|+||||+|+.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999875
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.60 E-value=0.0058 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.8
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 164
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.57 E-value=0.0078 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|+|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 165
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.57 E-value=0.0063 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999875
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.54 E-value=0.03 Score=54.89 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHH-HhcCCCCCCHHHHHHHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSE-LLNDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~~l~~~~ 274 (507)
...+++|+|+.|+|||||+..++..+.......+....- .. ....... ..+..+ ..+.....-...+...+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e~~~~~~-~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--EYVFKHK-KSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--CSCCCCS-SSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--hhhhccC-ceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 346899999999999999999988654432333332210 00 0000000 000000 000011112233677777788
Q ss_pred EEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 275 VLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 275 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
-+|++|++.+.+.+..++... ..|..|+.|+-...
T Consensus 211 d~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 899999998777665544432 34556777776554
No 167
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.019 Score=54.97 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999876654
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.54 E-value=0.0061 Score=53.49 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5689999999999999999998765333
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.51 E-value=0.0072 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|++|+||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 170
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.51 E-value=0.0081 Score=57.94 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
+....+.|.|++|+||||+++.++..+...|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4456799999999999999999998664433
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.47 E-value=0.0077 Score=51.63 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.5
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|+|+|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 172
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.46 E-value=0.0078 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.45 E-value=0.019 Score=56.07 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=30.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+...+....+...+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444334567899999999999999999998766443
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.43 E-value=0.012 Score=53.23 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|...+..+-....+++|.|++|+|||||+..++......-..+.|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444444312123468999999999999999999976543323444543
No 175
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.43 E-value=0.018 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred EEEEeccccchhhHHHHHHHhhhcc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 176
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.42 E-value=0.01 Score=52.96 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=23.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..+|+|.|++|+||||+++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987644
No 177
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.41 E-value=0.036 Score=55.82 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=42.7
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 178 GVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 178 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
|-..-+..|...+ .+-....++.|.|.+|+|||+||..++...... -..++|+. . ..+..++...++..
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----EMPAAQLTLRMMCS 251 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----SSCHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----CCCHHHHHHHHHHH
Confidence 3333444555555 333345689999999999999999999876542 23455554 1 23445566555543
No 178
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.40 E-value=0.048 Score=46.45 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred ccccccCchHHHHHHHHhhCCCceEeeC-CCC----C----CCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 9 RGEDTRDNFTSILHYVLSLKSIKTFIDD-QLI----R----GENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 9 ~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~----~----g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
+.+| ......|...-....+--|.|. +.. - -..|...+.+.|..|+.+|+++|++...|.|-.+|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4455 3356777777766666556665 442 1 245778888999999999999999999999999999887
Q ss_pred HHHHHhCCCeEEeEE
Q 043250 80 LECKHNYGQIVIPVF 94 (507)
Q Consensus 80 ~~~~~~~~~~v~pv~ 94 (507)
+. +.+.+||-|.
T Consensus 105 i~---~~~~PII~Vy 116 (189)
T 3hyn_A 105 IG---TKGLPVIVIY 116 (189)
T ss_dssp TT---TTCCCEEEEE
T ss_pred HH---hcCCcEEEEE
Confidence 72 2345566554
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.40 E-value=0.0086 Score=52.92 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999997654
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.38 E-value=0.017 Score=52.77 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc------cccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 232 (507)
..|..+|..+-....++.|.|++|+|||||+..++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3445555322234568999999999999999999885322 124566665
No 181
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.36 E-value=0.0088 Score=53.00 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+...+|+|+|++|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.0081 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|+|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 183
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.35 E-value=0.0099 Score=59.40 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=34.7
Q ss_pred CccccccchHHHHHHhhhc------------CCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCI------------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++|.+...+.|...+.. .....+-+.++|++|+|||++|+.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3567777766666554421 0112356899999999999999999987643
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.35 E-value=0.0099 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=24.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...++|.|.|+||+||||.|..+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999864
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.33 E-value=0.011 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998753
No 186
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.33 E-value=0.013 Score=55.96 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
++.++|+|+|-||+||||.+..++.-+...-..+..+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4678999999999999999998888765543334443
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.32 E-value=0.0087 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 188
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.32 E-value=0.057 Score=56.17 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=23.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+++.|+|.+|+||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3678999999999999999998866544
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.30 E-value=0.02 Score=51.70 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|...|..+-....+++|.|++|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222345789999999999999999998743
No 190
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.30 E-value=0.014 Score=56.75 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=36.2
Q ss_pred hHHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 182 PIEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 182 el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
-...|..+|. .+-...+++.|+|.+|+||||||..++......-..++|+.
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445555564 22234578999999999999999999987654444667776
No 191
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.0091 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998865
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.29 E-value=0.0095 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|+|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998753
No 193
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.27 E-value=0.0089 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 194
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.27 E-value=0.051 Score=54.63 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=35.7
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 178 GVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 178 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
|-..-+..|..++. +-....++.|.|.||+||||||..++......-..++|+.
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33344445555552 3234568999999999999999999987654433455553
No 195
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.26 E-value=0.0091 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 196
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.25 E-value=0.016 Score=53.58 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+..||....+....+.|+|+||+|||.+|..+++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 345677776432334579999999999999999999853
No 197
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.25 E-value=0.0097 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 198
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.23 E-value=0.009 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999865
No 199
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.19 E-value=0.27 Score=48.40 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..++|....++++.+.+..-......|.|+|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35788888888888766542222234689999999999999988764
No 200
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.18 E-value=0.0099 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.18 E-value=0.012 Score=51.17 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...|+|+|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 202
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.18 E-value=0.011 Score=52.97 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 203
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.17 E-value=0.0075 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 204
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.17 E-value=0.029 Score=56.23 Aligned_cols=29 Identities=28% Similarity=0.615 Sum_probs=23.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE 226 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 226 (507)
+.++|+|.+|+|||||+..++.....++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 35889999999999999999886654433
No 205
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.14 E-value=0.01 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 206
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.13 E-value=0.0087 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...|.|.|++|+||||+++.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998753
No 207
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.13 E-value=0.0098 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=19.9
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 208
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.12 E-value=0.0082 Score=58.35 Aligned_cols=29 Identities=17% Similarity=0.015 Sum_probs=24.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
....++|.|++|+|||||++.+++.+...
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34678999999999999999998866443
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.10 E-value=0.015 Score=53.41 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=26.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh-cccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI-SRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~ 232 (507)
...++.|.|.+|+|||+||.+++... ...-..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 45689999999999999999987653 23233444543
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.09 E-value=0.014 Score=55.93 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=33.3
Q ss_pred cccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 176 LVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
++|-...+..+...+... .....+++|.|+.|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355555565555444332 34467999999999999999999887654
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.04 E-value=0.037 Score=53.14 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 232 (507)
..|..+|..+-....++.|+|++|+|||+||..++...... -..++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34455553222345689999999999999999998765322 23556665
No 212
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.04 E-value=0.013 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998863
No 213
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.04 E-value=0.011 Score=52.59 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.03 E-value=0.011 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|++|+|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 215
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.02 E-value=0.031 Score=49.79 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=55.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
...+..++|..|.||||.+...+++...+-..++.+..... ...+...+...+...... .......++.+.+.++--
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a-~~~~~~~~~~~~~~~~~d 103 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKA-VPVSASKDIFKHITEEMD 103 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGGGGGGGCCSSCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEE-eecCCHHHHHHHHhcCCC
Confidence 34688999999999999999998877655444554432211 111222222222111100 002222333333333334
Q ss_pred EEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 276 LIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 276 LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
+|++|.+. +.++++.+.. +. ..+..||+|.++.
T Consensus 104 vViIDEaQF~~~~~V~~l~~-l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 104 VIAIDEVQFFDGDIVEVVQV-LA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp EEEECCGGGSCTTHHHHHHH-HH--HTTCEEEEEECSB
T ss_pred EEEEECcccCCHHHHHHHHH-Hh--hCCCEEEEEeccc
Confidence 99999983 3344533322 21 2477899999854
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.02 E-value=0.011 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..|+|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 217
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.97 E-value=0.017 Score=60.71 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=39.4
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
-..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 357899998888888877633 468999999999999999999866443
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.96 E-value=0.029 Score=53.92 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=25.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
....+++|.|+.|+||||++..++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999999865543
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.93 E-value=0.016 Score=51.94 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999998764
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.92 E-value=0.029 Score=55.90 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=25.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...++.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876554
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.89 E-value=0.029 Score=54.02 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=56.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
..++|+|+.|+|||||++.++..+.. ....+.+......... ... ... .+...........+...|..++-+|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~----~~i-~~~~ggg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK----NYT-QLFFGGNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS----SEE-EEECBTTBCHHHHHHHHTTSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch----hEE-EEEeCCChhHHHHHHHHhhhCCCEE
Confidence 46999999999999999999876543 2445555432211100 000 000 0000011222333677788888899
Q ss_pred EEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 278 VFDDVSHRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
++|+..+.+.++. +..+.. + +..+|+||...
T Consensus 245 ildE~~~~e~~~~-l~~~~~-g-~~tvi~t~H~~ 275 (330)
T 2pt7_A 245 ILGELRSSEAYDF-YNVLCS-G-HKGTLTTLHAG 275 (330)
T ss_dssp EECCCCSTHHHHH-HHHHHT-T-CCCEEEEEECS
T ss_pred EEcCCChHHHHHH-HHHHhc-C-CCEEEEEEccc
Confidence 9999977544443 333321 2 22256666544
No 222
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.88 E-value=0.012 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.2
Q ss_pred CceEEEEeccccchhhHHHHHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAV 217 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~ 217 (507)
...+++|.|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.88 E-value=0.023 Score=54.03 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=27.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...+++|+|++|+|||||+..++..+... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45689999999999999999999866543 3334443
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.82 E-value=0.011 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.++|+|+.|+|||||++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 225
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.82 E-value=0.047 Score=55.14 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
+..|...+. +-....++.|.|.+|+|||||+..++..+... -..++|+.
T Consensus 190 ~~~LD~~~g-Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 190 FTELDRMTS-GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CHHHHHHHS-SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cHHHHhhcC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344444442 22345689999999999999999999876542 23455554
No 226
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.80 E-value=0.011 Score=55.93 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=20.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|+|+|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 227
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.73 E-value=0.016 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|+.|+||||+++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999875
No 228
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.71 E-value=0.017 Score=54.39 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.71 E-value=0.015 Score=55.69 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.++|+|.|+.|+|||||+..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998753
No 230
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.71 E-value=0.017 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.69 E-value=0.032 Score=50.18 Aligned_cols=34 Identities=18% Similarity=-0.011 Sum_probs=25.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
-.|.+.|.||+||||+|..++..+...-..+.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 3488999999999999999998776543334443
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.68 E-value=0.042 Score=51.99 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=27.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67899999999999999999998765543334443
No 233
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.68 E-value=0.027 Score=53.49 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877554
No 234
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.66 E-value=0.017 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 235
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.65 E-value=0.018 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999864
No 236
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.65 E-value=0.017 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.64 E-value=0.018 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.8
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|+|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.63 E-value=0.017 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999865
No 239
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.61 E-value=0.019 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 240
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.60 E-value=0.027 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=29.6
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+.+...+. ....+.++|.|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444443 2346789999999999999999999875444
No 241
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.60 E-value=0.018 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=22.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
++|+|+|++|+||||||..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999875
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.57 E-value=0.018 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.158 Sum_probs=26.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc-ccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 232 (507)
...+++|.|++|+|||||++.++.... ..-..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456899999999999999999884322 2223444543
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.55 E-value=0.014 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998653
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.54 E-value=0.021 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.53 E-value=0.039 Score=52.40 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=28.9
Q ss_pred HhhhcceEEEEecCCCcCchhhHHHHHHHHHHHHhCCCeEEeEEEEec
Q 043250 51 TIEASSISIIIFSQRYASSRWCLDELLKILECKHNYGQIVIPVFYHVD 98 (507)
Q Consensus 51 ~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~~~v~ 98 (507)
++..++.+++|++-+.-.... ..+..++...+..+..++-|+-+.|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~--~~i~r~L~~~~~~~~~~vivlnK~D 128 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST--ALLDRFLVLVEANDIQPIICITKMD 128 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH--HHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred HHHhCCEEEEEEeCCCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCc
Confidence 678999999999977433322 3466666555555555555554543
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.53 E-value=0.019 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.338 Sum_probs=22.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+|+|.|++|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 247
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.53 E-value=0.098 Score=52.32 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=34.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
.+.++|.|.+|+|||+|+..+++.+... -+.++|. .+++- ...+.++.+.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER--~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER--TREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC--HHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc--chHHHHHHHHhhhc
Confidence 4568999999999999999999876433 2334443 23221 23455566666543
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.52 E-value=0.019 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999999865
No 249
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.51 E-value=0.023 Score=53.70 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=23.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++++|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999874
No 250
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.48 E-value=0.046 Score=49.17 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=28.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+.+...+.. .....|+|.|.+|+|||||+..++......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 245788999999999999999999865433
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.47 E-value=0.049 Score=54.45 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999877654
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.47 E-value=0.067 Score=61.97 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=36.1
Q ss_pred chHHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 181 CPIEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 181 ~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.-...|..+|. .+-....++.|.|++|+||||||.+++......-..+.|+.
T Consensus 715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33445555553 22234568999999999999999999987665434556654
No 253
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.45 E-value=0.36 Score=45.17 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=25.0
Q ss_pred ccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHH
Q 043250 44 ISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKIL 80 (507)
Q Consensus 44 ~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 80 (507)
....+.+.+++++++|.|+.-.--.+..| .++...+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 44678889999999999998665555444 2444433
No 254
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.45 E-value=0.02 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....+++|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987654
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.41 E-value=0.032 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.++++|+|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987643
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.40 E-value=0.02 Score=51.67 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+++|.|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988654
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.37 E-value=0.046 Score=49.61 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998765
No 258
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.37 E-value=0.064 Score=48.02 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...|+|.|+.|+||||++..+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 259
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.35 E-value=0.022 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|.|.|+||+||||.|..+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999864
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.33 E-value=0.041 Score=54.91 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+.+|.++|++|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999876654
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.33 E-value=0.04 Score=46.76 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999865
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.33 E-value=0.021 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||++.++..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.33 E-value=0.046 Score=53.10 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|...|..+-....++.|+|++|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444453333456799999999999999999999865
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.32 E-value=0.017 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998755
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.31 E-value=0.15 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+++|.|++|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998643
No 266
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.23 E-value=0.036 Score=52.58 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+++|.|+.|+|||||+..++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999986653
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.23 E-value=0.036 Score=52.46 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987653
No 268
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.21 E-value=0.078 Score=50.77 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..|..+|..+-....++.|+|.+|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554222346789999999999999999998753
No 269
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.20 E-value=0.057 Score=47.69 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|+|-|.-|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999998876544454443
No 270
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.18 E-value=0.024 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=21.1
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 271
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.17 E-value=0.035 Score=54.41 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=24.4
Q ss_pred CCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 193 GSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 193 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.-.....++|+|++|+|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33456789999999999999999999754
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.14 E-value=0.023 Score=56.67 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|.|+|++|+||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 273
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.12 E-value=0.021 Score=49.21 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
++++|+|..|+|||||+..+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999886544
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.11 E-value=0.11 Score=61.09 Aligned_cols=57 Identities=19% Similarity=0.097 Sum_probs=40.3
Q ss_pred cccccchHHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 176 LVGVECPIEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..+...-...|..+|. .+-....++.|+|++|+||||||.+++......-..++|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444556666664 22234678999999999999999999987765545566765
No 275
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.08 E-value=0.23 Score=50.72 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=36.6
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
....++.|.|.+|+|||+||.+++...... -..++|+.. ..+..++...++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHH
Confidence 345689999999999999999999877654 335566541 23445566555443
No 276
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.08 E-value=0.048 Score=50.37 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998766
No 277
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.08 E-value=0.039 Score=52.20 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=27.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccccc-ceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFE-GSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 232 (507)
...+++|.|++|+|||||+..++..+..... .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4468999999999999999999986654322 344543
No 278
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.06 E-value=0.053 Score=52.09 Aligned_cols=36 Identities=31% Similarity=0.273 Sum_probs=28.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..++...|.||+||||+|..++..+...-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 578889999999999999999987766644455444
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.03 E-value=0.019 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=16.5
Q ss_pred ceEEEEeccccchhhHHHHHHH-hhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVF-NKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 221 (507)
..+++|.|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 280
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.01 E-value=0.071 Score=51.74 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.+...++.+.|.||+||||+|..++..+...-..+..+.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345678888999999999999999987766534444443
No 281
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.97 E-value=0.087 Score=52.89 Aligned_cols=53 Identities=32% Similarity=0.397 Sum_probs=35.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHHHHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLS 252 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 252 (507)
.+.++|.|.+|+|||+|+..+++.+.. +-+.++|.- +++- .....++.+.+..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGER--TREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC--SHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccC--cHHHHHHHHhhhc
Confidence 456899999999999999999987643 334455543 3221 2345566666654
No 282
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.97 E-value=0.04 Score=56.14 Aligned_cols=47 Identities=2% Similarity=-0.079 Sum_probs=31.7
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
+.|.+-.+.+.+..........+|.+.|++|+||||+|+.+++++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 33433334444444211223478999999999999999999998754
No 283
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.96 E-value=0.047 Score=50.70 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
++|+|.|-||+||||+|..++..+...-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5678899999999999999998776553344444
No 284
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.95 E-value=0.045 Score=52.03 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
...++|+|+|-||+||||+|..++..+...-..+..+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3567888899999999999999998776553334444
No 285
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.93 E-value=0.17 Score=44.91 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=24.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE 226 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 226 (507)
+.|+|-|.-|+||||++..+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998865444
No 286
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.89 E-value=0.033 Score=53.11 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....+|+|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999988654
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.87 E-value=0.067 Score=54.45 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999876544
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.79 E-value=0.11 Score=60.20 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=38.6
Q ss_pred ccchHHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 179 VECPIEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 179 R~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...-...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 364 isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3334456666664 22234678999999999999999999987655545677775
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.77 E-value=0.05 Score=52.89 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+++|+|+.|+|||||+..++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4579999999999999999999986654
No 290
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.74 E-value=0.051 Score=51.16 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=26.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
.++|+|.|-||+||||+|..++..+...-..+..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788899999999999999998776543333333
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.72 E-value=0.037 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|+|.|++|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 292
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.72 E-value=0.06 Score=49.21 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=25.0
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
|+|.|-||+||||+|..++..+...-..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999999876654444444
No 293
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.037 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.67 E-value=0.066 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...|..+|..+-....++.|.|++|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4455556643323457899999999999999998764
No 295
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.67 E-value=0.031 Score=55.85 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=24.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++|+|+|++|+||||++..++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876544
No 296
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.66 E-value=0.084 Score=51.07 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=24.5
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.....+++|.|.+|+|||||+..++..+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999987554
No 297
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.66 E-value=0.07 Score=51.66 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc--ccccceEEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS--RHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 232 (507)
...+++.+.|.||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4568999999999999999999998877 5444444444
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.65 E-value=0.029 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+++|.|+.|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998755
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.64 E-value=0.072 Score=48.15 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.63 E-value=0.053 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...++.|.|++|+|||||+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987543
No 301
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.62 E-value=0.078 Score=47.77 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998755
No 302
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.57 E-value=0.082 Score=48.11 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=27.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc-ccceEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFA 231 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 231 (507)
...|+|.|++|+||||++..++..+... ++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999877543 3324433
No 303
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.57 E-value=0.077 Score=51.08 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..+++.+.|.||+||||+|..++..+...-..+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678899999999999999999988776544555554
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.55 E-value=0.039 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
++|+|.|++|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998753
No 305
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.55 E-value=0.062 Score=50.81 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=24.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999876544
No 306
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.53 E-value=0.17 Score=52.14 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||++.++...
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999743
No 307
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.45 E-value=0.096 Score=46.86 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..|.|.|+.|+||||++..+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999877554
No 308
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.44 E-value=0.059 Score=54.39 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...+++|.|+.|+|||||++.++..+... ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999866543 3445543
No 309
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.40 E-value=0.047 Score=59.31 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=81.5
Q ss_pred CCccccccchHHHHHHhhhcC-----------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 173 NKGLVGVECPIEEIESLLCIG-----------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
-..++|.+...+.|.+.+... -.....+.++|++|+|||+||+.++......|-. + +.......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v-~~~~l~~~- 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---I-KGPELLTM- 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---C-CCSSSTTC-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---E-echHhhhh-
Confidence 356788888888888776421 1234568899999999999999999976443221 1 11110000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCCc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASGS 302 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~ 302 (507)
..+ .....+..+.+.. ...+.+++||+++.. ..+..++..+... ..+.
T Consensus 551 ------------~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 617 (806)
T 1ypw_A 551 ------------WFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp ------------CTT-TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CC
T ss_pred ------------hcC-ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCe
Confidence 000 0001111122222 234678999998431 1235555555422 2233
Q ss_pred EEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhh
Q 043250 303 RVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 303 ~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.||.||....... .+ .....+.++..+.++-.+++..+.
T Consensus 618 ~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp BCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred EEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 4555665433221 11 123467788888888888887665
No 310
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.39 E-value=0.095 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....+++|.|++|+|||||...+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567899999999999999999987543
No 311
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.37 E-value=0.063 Score=55.13 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=25.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
...+|.++|++|+||||+|+.+++.+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998764433
No 312
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.29 E-value=0.049 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+-|.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999999874
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.29 E-value=0.038 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.117 Sum_probs=20.6
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+++|.|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
No 314
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.28 E-value=0.13 Score=53.90 Aligned_cols=37 Identities=22% Similarity=0.086 Sum_probs=26.7
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+...+...+. .+.+.|+|.+|+||||++..+...+.
T Consensus 153 ~Q~~Ai~~~l~-----~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 153 WQKVAAAVALT-----RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp HHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34444554442 36799999999999999988876543
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.26 E-value=0.066 Score=50.69 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+....++|+|+.|+|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445689999999999999999998765
No 316
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.26 E-value=0.27 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....++|+|+.|+|||||++.++.-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998863
No 317
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.22 E-value=0.2 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..++|+|.+|+|||||...+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 46889999999999999998853
No 318
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.21 E-value=0.063 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+++|.|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3468999999999999999999987754
No 319
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.13 E-value=0.04 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998863
No 320
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.13 E-value=0.92 Score=46.56 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCHH-----H----HHHHHcccCCCCCCcEEEEEeCchhh--Hh---hcCCceeEecCCCChHHHHHHHH
Q 043250 274 KVLIVFDDVSHRR-----Q----IESLIGCLDELASGSRVIITTRDKQV--LK---TCWASQIYQMKELVYADAHKLFC 338 (507)
Q Consensus 274 ~~LlVlDdv~~~~-----~----~~~l~~~l~~~~~~~~iliTtR~~~~--~~---~~~~~~~~~l~~L~~~ea~~L~~ 338 (507)
.++||+|++.+.- . +..+...- ...|..+|++|..+.+ .. .......+.+..-+..++..++-
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4799999997542 1 22333221 2568889998877641 11 11234456777778888887773
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.07 E-value=0.048 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.. .+++|.|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 68999999999999999999864
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.93 E-value=0.059 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 323
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.89 E-value=0.099 Score=53.95 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=30.9
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
+-|..-.+.+.+..........+|.++|++|+||||+|+.+..++..
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 33333334444444211223568999999999999999999987643
No 324
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.87 E-value=0.041 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=21.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998863
No 325
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.85 E-value=0.046 Score=49.88 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|+|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998743
No 326
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.85 E-value=0.053 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.-.|+|.|.+|+|||||...+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 327
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.85 E-value=0.097 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=25.7
Q ss_pred eEEEEe-ccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 198 CKLGIW-GIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467676 77999999999999987766444444443
No 328
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.085 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 329
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.81 E-value=0.64 Score=42.14 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=28.5
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
-=|+.+.+.+..++.. .-+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3355555666666542 127899999999999999888765
No 330
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.80 E-value=0.059 Score=47.77 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|+|.|+.|+||||+++.+++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999864
No 331
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.80 E-value=0.14 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...++..|.|.+|.|||++..+.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988775
No 332
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.80 E-value=0.64 Score=43.85 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
++++...+. ..+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555553 2478999999999999999998643
No 333
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.74 E-value=0.061 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 334
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.74 E-value=0.091 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|.|+|++|+||||+|+.+.+++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 335
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.68 E-value=0.057 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998865
No 336
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.66 E-value=0.034 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999887653
No 337
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.66 E-value=0.055 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.6
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..|+|.|.+|+|||||...+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 338
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.60 E-value=0.057 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.5
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999886
No 339
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.56 E-value=0.053 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998864
No 340
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.55 E-value=0.053 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+|+|+|++|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998864
No 341
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.53 E-value=0.048 Score=47.35 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
-|+|.|.+|+|||||...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999886
No 342
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.51 E-value=0.066 Score=49.20 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+++|.|+.|+|||||.+.++--+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45799999999999999999887544
No 343
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.49 E-value=0.061 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+++|.|+.|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 344
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.47 E-value=0.051 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+++|.|+.|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998863
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.47 E-value=0.11 Score=51.52 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=24.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999876654
No 346
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.43 E-value=0.14 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=28.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..+++.+.|.||+||||+|..++..+...-..+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567888999999999999999988776544444443
No 347
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.42 E-value=0.067 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 348
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.39 E-value=0.035 Score=58.08 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=35.1
Q ss_pred cCCccccccchHHHHHHhhhcCCC---------CceEEEEeccccchhhHHHHHHHhhh
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSE---------GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+.++|.+...+.+...+..+.. +..-|.++|++|+|||+||+.+++..
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 346789998766666555542210 01158899999999999999998754
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.37 E-value=0.058 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999998863
No 350
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.35 E-value=1 Score=45.02 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||...+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.35 E-value=0.11 Score=50.26 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|+|.|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999987543
No 352
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.32 E-value=0.055 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 353
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.29 E-value=0.12 Score=54.73 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=29.6
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.+.+.+...|.. ..+..|+||||+|||+.+.++...+... ...+.++
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEE
Confidence 345566666642 2367899999999998766665544333 2345554
No 354
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.28 E-value=0.066 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.6
Q ss_pred EEEEeccccchhhHHHHHHHhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.28 E-value=0.054 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.070 Sum_probs=22.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+|+|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998765
No 356
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.27 E-value=0.055 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||++.++.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999863
No 357
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.25 E-value=0.061 Score=49.83 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|+|||||.+.++.-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998643
No 358
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.24 E-value=0.057 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999998863
No 359
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.23 E-value=0.24 Score=49.22 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc----ceEEEEechhhhccCCHHHHHHHHHHHHh--------cCCCCCCHHH
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE----GSYFALNVREAEETGGIKDLQKKLLSELL--------NDGNRRNIES 265 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~ 265 (507)
+.++|.|.+|+|||+|+..+++....+.+ .+++.- +++ ....+.++.+.+...-. ...+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGe--R~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGI--TFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEE--CHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecC--CcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 44789999999999999999987654222 233332 222 12334555555443210 0111111111
Q ss_pred ---------HHHHHc---CCcEEEEEcCCC
Q 043250 266 ---------QLNRLA---RKKVLIVFDDVS 283 (507)
Q Consensus 266 ---------l~~~l~---~~~~LlVlDdv~ 283 (507)
+.++++ ++.+||++||+-
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 444443 689999999994
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.22 E-value=0.11 Score=52.68 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
...|.++|++|+||||+++.++..+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45789999999999999999998765444
No 361
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.22 E-value=0.059 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.....++|.|+.|+|||||.+.++.
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999999987
No 362
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.21 E-value=0.059 Score=48.90 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|+|||||.+.++.-+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998744
No 363
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.19 E-value=0.049 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+++|.|+.|+|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998864
No 364
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.18 E-value=0.059 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998763
No 365
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.18 E-value=0.063 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999863
No 366
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.15 E-value=0.2 Score=48.70 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=28.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc--ccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS--RHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 232 (507)
...++...|-||+||||+|..++..+. ..-..+..+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 456788899999999999999998887 5544455554
No 367
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.10 E-value=0.065 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 368
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.08 E-value=0.084 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...|+|.|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999986
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.02 E-value=0.093 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999863
No 370
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.02 E-value=0.11 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 371
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.98 E-value=0.094 Score=54.70 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+|.|+|++|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 372
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.91 E-value=0.07 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999998863
No 373
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.90 E-value=0.13 Score=50.30 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCceEEEEec-cccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWG-IGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3567787775 8999999999999987766533444443
No 374
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.90 E-value=0.66 Score=56.48 Aligned_cols=147 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH-----------hcCCCCCCHHHH
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL-----------LNDGNRRNIESQ 266 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~~~~~~l 266 (507)
+-+.++|++|+|||++|+.+...... .....+. .+.......++..+...+ .+..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~-------- 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS-------- 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS--------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eecCCCHHHHHHHHHHHhhhccccCCccccCCC--------
Q ss_pred HHHHcCCcEEEEEcCC--------CCHHHHHHHHcccCCCC------------CCcEEEEEeCchh-------hHhhcCC
Q 043250 267 LNRLARKKVLIVFDDV--------SHRRQIESLIGCLDELA------------SGSRVIITTRDKQ-------VLKTCWA 319 (507)
Q Consensus 267 ~~~l~~~~~LlVlDdv--------~~~~~~~~l~~~l~~~~------------~~~~iliTtR~~~-------~~~~~~~ 319 (507)
.++++++++||+ .....++-+...+...+ .+..+|.++-.+. -......
T Consensus 1334 ----~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRr 1409 (2695)
T 4akg_A 1334 ----DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH 1409 (2695)
T ss_dssp ----SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred ----CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhe
Q ss_pred ceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHh
Q 043250 320 SQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYA 362 (507)
Q Consensus 320 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 362 (507)
...+.++..+.++-.++|......--...+.....+..++..+
T Consensus 1410 f~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1410 AAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 375
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.87 E-value=0.081 Score=44.50 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
-|+|.|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999886
No 376
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.85 E-value=0.099 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4588999999999999999876
No 377
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.83 E-value=0.14 Score=53.45 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
+..+++.+.|.||+||||+|..++..+...-..+..+
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467889999999999999999998766553344444
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.81 E-value=0.093 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 379
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.80 E-value=0.099 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.2
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999986
No 380
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.79 E-value=0.12 Score=45.59 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....+|+|+|++|+||+++|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999887754
No 381
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.78 E-value=0.07 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 382
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.78 E-value=0.082 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999863
No 383
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.75 E-value=0.099 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999863
No 384
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.72 E-value=0.082 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998743
No 385
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.69 E-value=0.071 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999864
No 386
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.69 E-value=0.079 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.68 E-value=0.088 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
-|+|.|.+|+|||||...+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 388
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.67 E-value=0.086 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999999863
No 389
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.66 E-value=0.083 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.682 Sum_probs=19.7
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999986
No 390
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.66 E-value=0.084 Score=44.68 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.63 E-value=0.088 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36789999999999999999998653
No 392
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.62 E-value=0.09 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEeccccchhhHHHHHHHhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 393
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.61 E-value=0.11 Score=46.82 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=23.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 394
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.59 E-value=0.077 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|+|+.|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4568999999999999999998763
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.57 E-value=0.091 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.55 E-value=0.088 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999863
No 397
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.54 E-value=0.19 Score=45.66 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=25.6
Q ss_pred ceEEEEe-ccccchhhHHHHHHHhhhccc-ccceEEE
Q 043250 197 VCKLGIW-GIGGIGKTTIAGAVFNKISRH-FEGSYFA 231 (507)
Q Consensus 197 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 231 (507)
.++|+|+ +-||+||||+|..++..+... -..+..+
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 4566666 569999999999999988765 3334444
No 398
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.53 E-value=0.089 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.2
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999863
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.52 E-value=0.093 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=19.0
Q ss_pred EEEeccccchhhHHHHHHHhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~ 220 (507)
|+|.|.+|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 400
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.50 E-value=0.13 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999863
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.45 E-value=0.083 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.45 E-value=0.092 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999986
No 403
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.45 E-value=0.094 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998863
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.45 E-value=0.13 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 405
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.44 E-value=0.095 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.4
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 44689999999999999999986
No 406
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.42 E-value=0.15 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+++.+.|.||+||||+|..++..+...-..+..+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57889999999999999999987765544555554
No 407
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.37 E-value=0.1 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.--|+|.|.+|+|||||++.+......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 345889999999999999777665433
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.36 E-value=0.096 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999888763
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.36 E-value=0.098 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.+|+|+.|+|||||+..++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987644
No 410
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.36 E-value=0.12 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.296 Sum_probs=24.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...|.|.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 411
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.32 E-value=0.24 Score=46.79 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCceEEEEecc-ccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWGI-GGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 35678888886 899999999999987765544455544
No 412
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.32 E-value=0.14 Score=48.42 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+++|.+.+. ..+++|.|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 556666653 2478999999999999999998 54
No 413
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.31 E-value=0.33 Score=53.27 Aligned_cols=23 Identities=22% Similarity=-0.148 Sum_probs=20.6
Q ss_pred CceEEEEeccccchhhHHHHHHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVF 218 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~ 218 (507)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999884
No 414
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.31 E-value=0.21 Score=44.86 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=55.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
..+..++|.-|.||||-+...+++...+-..++.+.... ....+ ..+...+...... .......++.+.. +.--+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~Ryg-~~i~sr~G~~~~a-~~i~~~~di~~~~-~~~dv 93 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTRYS-SSFCTHDRNTMEA-LPACLLRDVAQEA-LGVAV 93 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCCC------------CEE-EEESSGGGGHHHH-TTCSE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Cccch-HHHHhhcCCeeEE-EecCCHHHHHHHh-ccCCE
Confidence 468899999999999988888877655544444444221 12233 3333333111110 0012223344444 23339
Q ss_pred EEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCc
Q 043250 277 IVFDDVSHRRQIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 277 lVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
|++|++.-...+.++...+. ..|..||+|.++
T Consensus 94 ViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 94 IGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp EEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred EEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 99999821111444443333 257789999988
No 415
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.30 E-value=0.18 Score=50.01 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=46.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
...+++|+|+.|+|||||...+...+...-..+++...--+.. ...... . .+.......-...++..++..+-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~-~~~~~q--~----~v~~~~g~~f~~~lr~~Lrq~pd 238 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD-IDGIGQ--T----QVNPRVDMTFARGLRAILRQDPD 238 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC-CSSSEE--E----ECBGGGTBCHHHHHHHHGGGCCS
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc-cCCcce--E----EEccccCcCHHHHHHHHhccCCC
Confidence 4468999999999999999999887654322233332110000 000000 0 00000001111235666777777
Q ss_pred EEEEcCCCCHHHHHH
Q 043250 276 LIVFDDVSHRRQIES 290 (507)
Q Consensus 276 LlVlDdv~~~~~~~~ 290 (507)
++++.++.+......
T Consensus 239 ~i~vgEiRd~et~~~ 253 (418)
T 1p9r_A 239 VVMVGEIRDLETAQI 253 (418)
T ss_dssp EEEESCCCSHHHHHH
T ss_pred eEEEcCcCCHHHHHH
Confidence 888888877655443
No 416
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.30 E-value=0.12 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999874
No 417
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.30 E-value=0.26 Score=45.85 Aligned_cols=38 Identities=21% Similarity=0.105 Sum_probs=28.6
Q ss_pred CCceEEEEecc-ccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWGI-GGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34678888875 899999999999987765544455554
No 418
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.29 E-value=0.2 Score=52.80 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.+.+.+...+. .+...|+|+||+|||+++..+...+...-...+.+.
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34445555553 246789999999999998888776544333445554
No 419
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.29 E-value=0.1 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999986
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.28 E-value=0.1 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.--|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34588999999999999999886
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.25 E-value=0.13 Score=48.47 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHHHHhhhcCCCCceEEEEec---cccchhhHHHHHHHhhhcccccceEEE
Q 043250 183 IEEIESLLCIGSEGVCKLGIWG---IGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
+.++.+.+.. ..++++|++ -||+||||+|..++..+...-..+..+
T Consensus 23 ~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 4444444432 234566665 999999999999998766543334443
No 422
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.21 E-value=0.33 Score=47.94 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=22.1
Q ss_pred CceEEEEe-ccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIW-GIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~ 222 (507)
..++|+|+ |-||+||||+|..++..+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45666665 8899999999999998775
No 423
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.20 E-value=0.12 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.2
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.--|+|.|.+|+|||||...+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44678999999999999999886
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.15 E-value=0.1 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.1
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45889999999999999998863
No 425
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.11 E-value=0.089 Score=48.75 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.09 E-value=0.091 Score=45.48 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.3
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+.|+|.+|+|||++|.+++.. . ...+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 689999999999999999866 1 3456665
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.08 E-value=0.11 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999863
No 428
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.06 E-value=0.1 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..|+|.|.+|+|||||...+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999986
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.05 E-value=0.095 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEeccccchhhHHHHHHHhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.02 E-value=0.21 Score=51.44 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.+...|..+-....+++|.|++|+|||||+..++......-..++++.
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344455432234568999999999999999999976544322344543
No 431
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.99 E-value=0.11 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.--|+|.|.+|+|||||+..+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999986
No 432
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.96 E-value=0.12 Score=50.43 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...++|.|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987643
No 433
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.90 E-value=0.12 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 345799999999999999999986
No 434
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.89 E-value=0.15 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...|+|.|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999976
No 435
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.89 E-value=0.19 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999863
No 436
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.88 E-value=0.11 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999875
No 437
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.88 E-value=0.19 Score=46.65 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.....|+|.|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999863
No 438
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.86 E-value=0.12 Score=44.53 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=20.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999863
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.--|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45689999999999999999886
No 440
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.85 E-value=0.12 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999863
No 441
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.85 E-value=0.1 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999988643
No 442
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.84 E-value=0.4 Score=48.21 Aligned_cols=83 Identities=20% Similarity=0.156 Sum_probs=45.0
Q ss_pred ceEEEEeccccchhhHHHH-HHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHH--
Q 043250 197 VCKLGIWGIGGIGKTTIAG-AVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND--------GNRRNIES-- 265 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~-- 265 (507)
.+.++|.|.+|+|||+||. .+++... .+..+.+..+++- ...+.++.+.+...-... .+......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR--~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQK--QSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCC--HHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCc--chHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 4568899999999999965 6666542 2333333323221 233555555554421111 11111111
Q ss_pred -------HHHHH--cCCcEEEEEcCCC
Q 043250 266 -------QLNRL--ARKKVLIVFDDVS 283 (507)
Q Consensus 266 -------l~~~l--~~~~~LlVlDdv~ 283 (507)
+.+++ .++.+|+++||+-
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 33344 4689999999993
No 443
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.81 E-value=0.12 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999985
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.77 E-value=0.12 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.6
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 445
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.76 E-value=0.12 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999863
No 446
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.66 E-value=0.48 Score=47.32 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=46.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccc---cceEEEEechhhhccCCHHHHHHHHHHHHhc--------CCCCCCHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHF---EGSYFALNVREAEETGGIKDLQKKLLSELLN--------DGNRRNIES 265 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~ 265 (507)
.+.++|.|.+|+|||+|+..+++....+. ...+.+..+++- ...+.++.+.+...-.. ..+......
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER--~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT--NEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC--HHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC--cHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 34577889999999999999998654321 122333223221 23355555555542111 011111111
Q ss_pred ---------HHHHH---cCCcEEEEEcCC
Q 043250 266 ---------QLNRL---ARKKVLIVFDDV 282 (507)
Q Consensus 266 ---------l~~~l---~~~~~LlVlDdv 282 (507)
+.+++ +++.+||++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 34444 468999999997
No 447
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.64 E-value=0.19 Score=46.31 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=26.4
Q ss_pred CceEEEEe-ccccchhhHHHHHHHhhhcccccceEEE
Q 043250 196 GVCKLGIW-GIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 196 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
..++|+|+ +-||+||||+|..++..+...-..+..+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 34677776 6899999999999998776553344444
No 448
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.63 E-value=0.12 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999999863
No 449
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.61 E-value=0.13 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 34688999999999999999986
No 450
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.61 E-value=0.13 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.9
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998863
No 451
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.59 E-value=0.13 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...-|+|.|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999875
No 452
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.59 E-value=0.13 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.128 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3458999999999999999999863
No 453
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.57 E-value=0.13 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999886
No 454
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.56 E-value=0.13 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998863
No 455
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.56 E-value=0.12 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999985
No 456
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.54 E-value=0.13 Score=44.99 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=20.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999863
No 457
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.53 E-value=0.13 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999874
No 458
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.51 E-value=0.13 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999986
No 459
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.51 E-value=0.098 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.0
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999853
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.47 E-value=0.12 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999986
No 461
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.47 E-value=0.14 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 346799999999999999999986
No 462
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.45 E-value=0.32 Score=48.99 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=45.1
Q ss_pred ceEEEEeccccchhhHHHH-HHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhc--------CCCCCCHHH--
Q 043250 197 VCKLGIWGIGGIGKTTIAG-AVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLN--------DGNRRNIES-- 265 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~-- 265 (507)
.+.++|.|.+|+|||+||. .+++... .+..+.+..+++- ...+.++.+.+...-.. ..+......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR--~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQK--KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCC--HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC--cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 3458899999999999965 6666542 2333333323221 23355555555432111 111111111
Q ss_pred -------HHHHH--cCCcEEEEEcCCC
Q 043250 266 -------QLNRL--ARKKVLIVFDDVS 283 (507)
Q Consensus 266 -------l~~~l--~~~~~LlVlDdv~ 283 (507)
+.+++ +++.+|+++||+-
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 33344 4689999999993
No 463
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.39 E-value=0.25 Score=45.61 Aligned_cols=36 Identities=22% Similarity=0.093 Sum_probs=25.9
Q ss_pred CceEEEE-eccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGI-WGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I-~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..++|+| .|-||+||||+|..++..+. .-..+..+.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 4566666 66799999999999999887 433344443
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.39 E-value=0.25 Score=43.20 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=55.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHHcCC
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND---GNRRNIESQLNRLARK 273 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~l~~~l~~~ 273 (507)
.++..++|+.|.||||.+...+++...+-..+..+...... ..+.. .+...++.. .......++.+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~--r~~~~----~i~s~~g~~~~a~~~~~~~~i~~~~~~~ 81 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN--RYSKE----DVVSHMGEKEQAVAIKNSREILKYFEED 81 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------C----EEECTTSCEEECEEESSSTHHHHHCCTT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc--cchHH----HHHhhcCCceeeEeeCCHHHHHHHHhcc
Confidence 46899999999999999999988775443333333211000 00000 011111100 0011223455555443
Q ss_pred cEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 274 KVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 274 ~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
--+|++|.+. +.++++.+.... ..+..||+|.++.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~---~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIA---ESGRRVICAGLDM 118 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEEECSB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH---hCCCEEEEEeccc
Confidence 3489999872 334444443221 2367899998854
No 465
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.39 E-value=0.14 Score=49.74 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 346899999999999999999986
No 466
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.37 E-value=0.29 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=24.3
Q ss_pred EEEE-eccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 199 KLGI-WGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 199 ~v~I-~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+|+| .+-||+||||+|..++..+...- .+..+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 3444 68899999999999999877655 444443
No 467
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.37 E-value=0.14 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCceEEEEeccccchhhHHHHHHHh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
+....|+|+|.+|+|||||...+..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999986
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.37 E-value=0.13 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998863
No 469
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.34 E-value=0.14 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999886
No 470
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.34 E-value=0.65 Score=46.39 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...-|+|.|.+|+|||||...+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999863
No 471
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.34 E-value=0.11 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..|+|.|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999875
No 472
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.33 E-value=0.14 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
--|+|.|.+|+|||||...+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999986
No 473
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.31 E-value=0.13 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999873
No 474
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.30 E-value=0.14 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 345799999999999999999986
No 475
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.29 E-value=0.13 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999863
No 476
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.28 E-value=0.14 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45889999999999999999864
No 477
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.28 E-value=0.94 Score=44.11 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=26.9
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 178 GVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 178 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
|.+.-++.+.+.+. .+.+++.|.+|+|||||...+...
T Consensus 148 gi~~L~~~I~~~~~-----~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 148 GMAKVMEAINRYRE-----GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp THHHHHHHHHHHHT-----TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcc-----cCcEEEEcCCCCchHHHHHHHHhh
Confidence 44444444544442 135889999999999999999875
No 478
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.24 E-value=0.17 Score=44.47 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999863
No 479
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.23 E-value=0.14 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 480
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.23 E-value=0.092 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.7
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
....|+|.|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999988765
No 481
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.17 E-value=0.14 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
No 482
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.17 E-value=0.14 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999873
No 483
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.16 E-value=0.14 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999873
No 484
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.14 E-value=0.16 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=26.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++|+|+.|+|||||++.++..+.. ....+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 347999999999999999999986543 23445554
No 485
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.13 E-value=0.15 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.--|+|.|.+|+|||||...+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 34588999999999999999986
No 486
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.13 E-value=0.15 Score=49.70 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++|.|+.|+|||||.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 346899999999999999999985
No 487
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.10 E-value=0.14 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.1
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...|+|.|.+|+|||||...+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45688999999999999999986
No 488
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.09 E-value=0.42 Score=44.81 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=27.9
Q ss_pred CCceEEEEecc-ccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWGI-GGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++|+|+|. ||+||||+|..++..+...-..++.+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34567777764 899999999999988776544455554
No 489
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.05 E-value=0.14 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||+|...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999999874
No 490
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.03 E-value=0.15 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999999885
No 491
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.02 E-value=0.15 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3457999999999999999999863
No 492
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.01 E-value=0.24 Score=44.37 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=24.4
Q ss_pred eEEEEecc-ccchhhHHHHHHHhhhcccccceEEE
Q 043250 198 CKLGIWGI-GGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 198 ~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
++|.|+|. ||+||||++..++..+......+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46777775 89999999999998776543333333
No 493
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.01 E-value=0.13 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.--|+|.|.+|+|||+|...+.++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345889999999999999877664
No 494
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.96 E-value=0.15 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..-|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999863
No 495
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.94 E-value=0.17 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.4
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
....|+|.|.+|+|||||...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 466789999999999999999876
No 496
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.92 E-value=0.42 Score=47.46 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+.++|.|.+|+|||+|+..+++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 34578999999999999999988654
No 497
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.91 E-value=0.16 Score=44.59 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..-|+|.|.+|+|||||...+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 45688999999999999999986
No 498
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.87 E-value=0.17 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=19.2
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
-++.|+|.+|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999886543
No 499
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.86 E-value=0.16 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.5
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
--|+|.|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 500
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.84 E-value=0.17 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999863
Done!