BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043251
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 32/332 (9%)
Query: 27 NSVCSLPESHKWPK-----FDDLY-----DNKISVPVIDLRD---------PRVAQLIGR 67
+ + S+P+ + PK +D++ ++ VP IDL++ + + +
Sbjct: 12 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 68 ACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKAL--RAPAGATGYGIARITP 125
A WGV LI HGIP ++++ + FSL +K K +A GYG
Sbjct: 72 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 126 FFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLD 185
+ W + F + +WP + + + Y K + +LA ++ + + L
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 186 ISEEQAEEMNWVGSSSAL----QLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQ 241
+ ++ E+ VG L ++N YP CP+P A+G+ HTD S +T + N + GLQ
Sbjct: 192 LEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 249
Query: 242 IFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPT 301
+F E WV+ K V ++V+++GD ILSN ++ ++LHR VN+++ R+S A F PP
Sbjct: 250 LF-YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 308
Query: 302 DSTVV----PIVKSGQVARYRPVTVKEFISLK 329
D V+ +V A++ P T + I K
Sbjct: 309 DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 32/332 (9%)
Query: 27 NSVCSLPESHKWPK-----FDDLY-----DNKISVPVIDLRD---------PRVAQLIGR 67
+ + S+P+ + PK +D++ ++ VP IDL++ + + +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 68 ACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKAL--RAPAGATGYGIARITP 125
A WGV LI HGIP ++++ + FSL +K K +A GYG
Sbjct: 73 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 FFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLD 185
+ W + F + +WP + + + Y K + +LA ++ + + L
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 186 ISEEQAEEMNWVGSSSAL----QLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQ 241
+ ++ E+ VG L ++N YP CP+P A+G+ HTD S +T + N + GLQ
Sbjct: 193 LEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 250
Query: 242 IFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPT 301
+F E WV+ K V ++V+++GD ILSN ++ ++LHR VN+++ R+S A F PP
Sbjct: 251 LF-YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 309
Query: 302 DSTVV----PIVKSGQVARYRPVTVKEFISLK 329
D V+ +V A++ P T + I K
Sbjct: 310 DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 32/332 (9%)
Query: 27 NSVCSLPESHKWPK-----FDDLY-----DNKISVPVIDLRD---------PRVAQLIGR 67
+ + S+P+ + PK +D++ ++ VP IDL++ + + +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 68 ACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKAL--RAPAGATGYGIARITP 125
A WGV LI HGIP ++ + + FSL +K K +A GYG
Sbjct: 73 ASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 FFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLD 185
+ W + F + +WP + + + Y K + +LA ++ + + L
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 186 ISEEQAEEMNWVGSSSAL----QLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQ 241
+ ++ E+ VG L ++N YP CP+P A+G+ HTD S +T + N + GLQ
Sbjct: 193 LEPDRLEKE--VGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQ 250
Query: 242 IFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPT 301
+F E WV+ K V ++V ++GD ILSN ++ ++LHR VN+++ R+S A F PP
Sbjct: 251 LF-YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 309
Query: 302 DSTVV-PIVKSGQV---ARYRPVTVKEFISLK 329
D V+ P+ + V A++ P T + I K
Sbjct: 310 DKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 11/248 (4%)
Query: 63 QLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIAR 122
+ I ACE WG F+L+ HGIP V E + + Q+ K L A G A
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQ-AE 80
Query: 123 ITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFK 182
+T W F + I + ++ P ++ +V + K++ LA++L L+ +
Sbjct: 81 VT----DXDWESTFFLKHLPISNISE--VPDLDEEYREVXRDFAKRLEKLAEELLDLLCE 134
Query: 183 SLDISEEQAEEMNW--VGSSSALQLNSYPSCPEPNRAVGLAPHTDTS-LITILHENSIAG 239
+L + + + + G + ++++YP CP+P+ GL HTD +I + ++ ++G
Sbjct: 135 NLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSG 194
Query: 240 LQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNP 299
LQ+ K + W+ V P ++VVN+GD +++N ++ +V HRV + R SLA FYNP
Sbjct: 195 LQLLK-DGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNP 253
Query: 300 PTDSTVVP 307
+D+ + P
Sbjct: 254 GSDAVIYP 261
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 10/248 (4%)
Query: 60 RVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGY- 118
R AQ +G + E++G L + + + A A+ F+LP K + GA GY
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 119 --GI--ARITPFFD-KYMWHEGFTIM-GTSIHDH-AKQLWPHNHAKFCDVMETYQKKMNI 171
G+ A+ +D K WH G + G H A +WP F + ++
Sbjct: 81 PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDG 140
Query: 172 LADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITI 231
++ + I L + + + G+S L+L YP P+ V H D + IT+
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNS-VLRLLHYPPIPKDATGVRAGAHGDINTITL 199
Query: 232 LHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRL 291
L GL++ ++ W+ + P G LV+N+GD L+N P+ +HRV VN +R
Sbjct: 200 LLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV-VNPPPERR 258
Query: 292 SLAYFYNP 299
+ + P
Sbjct: 259 GVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 165 YQKKMNILADQLTQLIFKSLDISEEQAE------EMNWVGSSSALQLNSYP--SCPEPNR 216
Y +K N LA +L + I ++ E +A+ E + L++ YP + E
Sbjct: 109 YYEKANTLASELLEWI-ETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXG 167
Query: 217 AVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFP 276
A+ A H D +LIT+L + GLQ+ ++ W+ V G +++N+GD S+ FP
Sbjct: 168 AIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFP 227
Query: 277 NVLHRV----SVNQKRQRLSLAYFYNP 299
+ HRV ++ + R+SL F +P
Sbjct: 228 STSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 111/281 (39%), Gaps = 42/281 (14%)
Query: 60 RVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESE-------------ARRLFSLPSRQKL 106
RVAQ I A G F + HGI + L E A R ++ + ++
Sbjct: 27 RVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQV 86
Query: 107 KA---LRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHN--HAKFCDV 161
+A L P + P F + H +WP H F D
Sbjct: 87 RAGYYLSIPGKKAVESFCYLNPNFTP-----DHPRIQAKTPTHEVNVWPDETKHPGFQDF 141
Query: 162 METYQKKMNILADQLTQLIFKSLDISEEQ---AEEMNWVGSSSALQLNSYPSC-PEPNRA 217
E Y + L+ L L +L + +E+ A + +++ L YP P P A
Sbjct: 142 AEQYYWDVFGLSSAL--LKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 218 VGLAP---------HTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFH 268
+ A H D SLIT+L+++++ LQ+ + G+ ++ D ++N G
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETAAGYQDIEADDTGYLINCGSYMA 258
Query: 269 ILSNARFPNVLHRVS-VNQKRQRLSLAYFYNPPTDSTVVPI 308
L+N + +HRV VN +RQ SL +F N DS + P
Sbjct: 259 HLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVIDPF 297
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 119/303 (39%), Gaps = 51/303 (16%)
Query: 47 NKISVPVIDLR---------DPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESE---- 93
+K +VP ID+ RVAQ I A G F + HGI + L E
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMS 64
Query: 94 ---------ARRLFSLPSRQKLKA---LRAPAGATGYGIARITPFFDKYMWHEGFTIMGT 141
A R ++ + +++A L P + P F +
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTP-----DHPRIQA 119
Query: 142 SIHDHAKQLWPHN--HAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQ---AEEMNW 196
H +WP H F D E Y + L+ L L +L + +E+ A
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSAL--LKGYALALGKEENFFARHFKP 177
Query: 197 VGSSSALQLNSYPSC-PEPNRAVGLAP---------HTDTSLITILHENSIAGLQIFKQE 246
+ +++ L YP P P A+ A H D SLIT+L+++++ LQ+ +
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETA 236
Query: 247 VGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVS-VNQKRQRLSLAYFYNPPTDSTV 305
G+ ++ D ++N G L+N + +HRV VN +RQ SL +F N DS +
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVI 294
Query: 306 VPI 308
P
Sbjct: 295 DPF 297
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 67 RACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPA-----GATGY--- 118
R G+F L G+ LK A+ F S + +A+ +P G TG
Sbjct: 24 RCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESE 83
Query: 119 GIARIT---PFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQ 175
A+IT + D M + MGT A L+P F + Y + +
Sbjct: 84 STAQITNTGSYSDYSMCYS----MGT-----ADNLFPS--GDFERIWTQYFDRQYTASRA 132
Query: 176 LTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRA----VGLAPHTDTSLITI 231
+ + + ++ + E ++ L+ +P PE A + +APH D S++T+
Sbjct: 133 VAREVLRATGTEPDGGVEA-FLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 191
Query: 232 LHENSIA-GLQIFKQEVG--WVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKR 288
+ + A G + EVG + + A++V G + +++ + H V+ ++
Sbjct: 192 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 251
Query: 289 Q-----RLSLAYFYNPPTDSTV-VPIVK 310
Q R S +F P D T VP+ +
Sbjct: 252 QIAGSSRTSSVFFLRPNADFTFSVPLAR 279
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 67 RACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPA-----GATGY--- 118
R G+F L G+ LK A+ F S + +A+ +P G TG
Sbjct: 24 RCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESE 83
Query: 119 GIARIT---PFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQ 175
A+IT + D M + MGT A L+P F + Y + +
Sbjct: 84 STAQITNTGSYSDYSMCYS----MGT-----ADNLFPS--GDFERIWTQYFDRQYTASRA 132
Query: 176 LTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRA----VGLAPHTDTSLITI 231
+ + + ++ + E ++ L+ +P PE A + +APH D S++T+
Sbjct: 133 VAREVLRATGTEPDGGVEA-FLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 191
Query: 232 LHENSIA-GLQIFKQEVG--WVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKR 288
+ + A G + EVG + + A++V G + +++ + H V+ ++
Sbjct: 192 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 251
Query: 289 Q-----RLSLAYFYNPPTDSTV-VPIVK 310
Q R S +F P D T VP+ +
Sbjct: 252 QIAGSSRTSSVFFLRPNADFTFSVPLAR 279
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 67 RACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPA-----GATGY--- 118
R G+F L G+ LK A+ F S + +A+ +P G TG
Sbjct: 44 RCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESE 103
Query: 119 GIARIT---PFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQ 175
A+IT + D M + MGT A L+P F + Y + +
Sbjct: 104 STAQITNTGSYSDYSMCYS----MGT-----ADNLFPS--GDFERIWTQYFDRQYTASRA 152
Query: 176 LTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRA----VGLAPHTDTSLITI 231
+ + + ++ + E ++ L+ +P PE A + +APH D S++T+
Sbjct: 153 VAREVLRATGTEPDGGVEA-FLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 211
Query: 232 LHENSIA-GLQIFKQEVG--WVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKR 288
+ + A G + EVG + + A++V G + +++ + H V+ ++
Sbjct: 212 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 271
Query: 289 Q-----RLSLAYFYNPPTDSTV-VPIVK 310
Q R S +F P D T VP+ +
Sbjct: 272 QIAGSSRTSSVFFLRPNADFTFSVPLAR 299
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 67 RACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPA-----GATGY--- 118
R G+F L G+ LK A+ F S + +A+ +P G TG
Sbjct: 24 RCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESE 83
Query: 119 GIARIT---PFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQ 175
A+IT + D M + MGT A L+P F + Y + +
Sbjct: 84 STAQITNTGSYSDYSMCYS----MGT-----ADNLFPS--GDFERIWTQYFDRQYTASRA 132
Query: 176 LTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRA----VGLAPHTDTSLITI 231
+ + + ++ + E ++ L+ +P PE A + +APH D S++T+
Sbjct: 133 VAREVLRATGTEPDGGVEA-FLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 191
Query: 232 LHENSIA-GLQIFKQEVG--WVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKR 288
+ + A G + EVG + + A++V G + +++ + H V+ ++
Sbjct: 192 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 251
Query: 289 Q-----RLSLAYFYNPPTDSTV-VPIVK 310
Q R S +F P D T VP+ +
Sbjct: 252 QIAGSSRTSSVFFLRPNADFTFSVPLAR 279
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 67 RACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPA-----GATGY--- 118
R G+F L G+ LK A+ F S + +A+ +P G TG
Sbjct: 24 RCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESE 83
Query: 119 GIARIT---PFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQ 175
A+IT + D M + MGT A L+P F + Y + +
Sbjct: 84 STAQITNTGSYSDYSMCYS----MGT-----ADNLFPS--GDFERIWTQYFDRQYTASRA 132
Query: 176 LTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRA----VGLAPHTDTSLITI 231
+ + + ++ + E ++ L+ +P PE A + +APH D S++T+
Sbjct: 133 VAREVLRATGTEPDGGVEA-FLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 191
Query: 232 LHENSIA-GLQIFKQEVG--WVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKR 288
+ + A G + EVG + + A++V G + +++ + H V+ ++
Sbjct: 192 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 251
Query: 289 Q-----RLSLAYFYNPPTDSTV-VPIVK 310
Q + S +F P D T VP+ +
Sbjct: 252 QIAGSSQTSSVFFLRPNADFTFSVPLAR 279
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 52 PVIDLRDPRVAQLI----GRACEKWGVFQLI------YHGIPLNVLKDAESEARRLFSLP 101
PVID RDP V ++ G+A G F+LI Y G + ++++A L +L
Sbjct: 50 PVID-RDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEG-RIRIMREARDLVLNLVNL- 106
Query: 102 SRQKLKALRAPAGATGYGIA---RITPFFDKYMWHEGFTIMGTSIHDHAKQLWP 152
+ + A+R PA G +A I+ +G T +G + DHA WP
Sbjct: 107 DKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWP 160
>pdb|3KYG|A Chain A, Crystal Structure Of Vca0042 (L135r) Complexed With
C-Di-Gmp
pdb|3KYG|B Chain B, Crystal Structure Of Vca0042 (L135r) Complexed With
C-Di-Gmp
Length = 227
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 220 LAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPV----DGALVVNVGDLFHILSN--- 272
+ HTD L+ + + S LQ F QE W++++ + +GAL+ L HIL
Sbjct: 41 IGTHTDKFLLVEMPKISADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVP 100
Query: 273 ARFPNVLHRVSVNQKRQ 289
F ++ + + V+Q+R+
Sbjct: 101 MAFLSIPNTMQVSQRRK 117
>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 278
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 52 PVIDLRDPRVAQLI----GRACEKWGVFQLI------YHGIPLNVLKDAESEARRLFSLP 101
PVID RDP V ++ G+A G F LI Y G + ++++A + +
Sbjct: 56 PVID-RDPAVRAVLVRGEGKAFSSGGSFDLIDETIGDYQG-RIRIMREARDLVHNMINCD 113
Query: 102 SRQKLKALRAPAGATGYGIA---RITPFFDKYMWHEGFTIMGTSIHDHAKQLWP 152
+ + A+R PA G +A I+ +G T +G + DHA WP
Sbjct: 114 T-PVVSAIRGPAVGAGLVVALLADISVAGRTAKLIDGHTKLGVAAGDHAAICWP 166
>pdb|2FMY|A Chain A, Co-Dependent Transcription Factor Cooa From
Carboxydothermus Hydrogenoformans (Imidazole-Bound Form)
pdb|2FMY|B Chain B, Co-Dependent Transcription Factor Cooa From
Carboxydothermus Hydrogenoformans (Imidazole-Bound Form)
pdb|2FMY|C Chain C, Co-Dependent Transcription Factor Cooa From
Carboxydothermus Hydrogenoformans (Imidazole-Bound Form)
pdb|2FMY|D Chain D, Co-Dependent Transcription Factor Cooa From
Carboxydothermus Hydrogenoformans (Imidazole-Bound Form)
Length = 220
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 265 DLFHILSNARFPNVLHRVSVNQKRQRLSL-AYFYNPPTDSTVVPIVKSGQVARYRPVTVK 323
+L +L++ + VL + QR S A Y P T+ +V +VKSG+V Y K
Sbjct: 10 NLLEVLNSEEYSGVLKEF----REQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDK 65
Query: 324 EF 325
EF
Sbjct: 66 EF 67
>pdb|2HKX|A Chain A, Structure Of Cooa Mutant (N127lS128L) FROM
Carboxydothermus Hydrogenoformans
pdb|2HKX|B Chain B, Structure Of Cooa Mutant (N127lS128L) FROM
Carboxydothermus Hydrogenoformans
Length = 221
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 265 DLFHILSNARFPNVLHRVSVNQKRQRLSL-AYFYNPPTDSTVVPIVKSGQVARYRPVTVK 323
+L +L++ + VL + QR S A Y P T+ +V +VKSG+V Y K
Sbjct: 11 NLLEVLNSEEYSGVLKEF----REQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDK 66
Query: 324 EF 325
EF
Sbjct: 67 EF 68
>pdb|1YLN|A Chain A, The Crystal Structure Of The Protein Of Unknown Function
Vca0042 From Vibrio Cholerae O1
Length = 252
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 220 LAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPV----DGALVVNVGDLFHIL 270
+ HTD L+ + + S LQ F QE W++++ + +GAL+ L HIL
Sbjct: 61 IGTHTDKFLLVEMPKISADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHIL 115
>pdb|2RDE|A Chain A, Crystal Structure Of Vca0042 Complexed With C-Di-Gmp
pdb|2RDE|B Chain B, Crystal Structure Of Vca0042 Complexed With C-Di-Gmp
Length = 251
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 220 LAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPV----DGALVVNVGDLFHILSN--- 272
+ HTD L+ + + S LQ F QE W++++ + +GAL+ L HIL
Sbjct: 60 IGTHTDKFLLVEMPKISADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVP 119
Query: 273 ARFPNVLHRVSVNQKRQ 289
F ++ + + V+Q R+
Sbjct: 120 MAFLSIPNTMQVSQLRK 136
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 62 AQLIGRACEKWGVFQLIYHGIPLN-VLKDAESEARRLFSLPSRQKLKALRAPAGATGYGI 120
A+ + RA V +I GIP + ++K AE E L LPSR KL G+T +
Sbjct: 84 AEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRV 143
Query: 121 ARIT 124
R T
Sbjct: 144 LRKT 147
>pdb|1IFA|A Chain A, Three-Dimensional Crystal Structure Of Recombinant Murine
Interferon-Beta
Length = 158
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 172 LADQL-TQLIFKSLDISEEQAEEMNWVGSSSALQLNSY 208
L D+L Q +F + E+Q E + W SS+AL L SY
Sbjct: 81 LLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSY 118
>pdb|1WU3|I Chain I, Crystal Structure Of Recombinant Murine Interferon Beta
Length = 161
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 172 LADQL-TQLIFKSLDISEEQAEEMNWVGSSSALQLNSY 208
L D+L Q +F + E+Q E + W SS+AL L SY
Sbjct: 83 LLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSY 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,790,139
Number of Sequences: 62578
Number of extensions: 388027
Number of successful extensions: 1032
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 29
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)