Query 043252
Match_columns 337
No_of_seqs 301 out of 1883
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.8E-35 1E-39 292.8 27.2 287 18-337 10-300 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 1.1E-24 2.4E-29 195.7 12.2 137 194-336 1-139 (287)
3 PLN03210 Resistant to P. syrin 99.7 2.3E-17 4.9E-22 173.3 15.1 138 187-336 182-334 (1153)
4 PRK00411 cdc6 cell division co 99.2 3.1E-10 6.7E-15 106.6 14.1 120 187-308 28-150 (394)
5 TIGR02928 orc1/cdc6 family rep 99.1 1.7E-09 3.7E-14 100.6 14.6 118 189-308 15-141 (365)
6 PF13401 AAA_22: AAA domain; P 99.0 2.2E-09 4.8E-14 84.5 7.8 117 216-335 4-125 (131)
7 PF05729 NACHT: NACHT domain 98.9 3.2E-09 6.9E-14 86.9 8.0 114 217-336 1-130 (166)
8 cd00009 AAA The AAA+ (ATPases 98.9 3.2E-08 7E-13 78.8 11.4 124 192-336 1-130 (151)
9 PF13191 AAA_16: AAA ATPase do 98.8 1.4E-08 3.1E-13 84.8 8.4 48 190-240 1-48 (185)
10 cd01128 rho_factor Transcripti 98.8 9.5E-09 2.1E-13 89.6 6.4 90 216-307 16-114 (249)
11 TIGR03015 pepcterm_ATPase puta 98.7 3.9E-07 8.5E-12 81.0 15.1 97 217-318 44-145 (269)
12 COG1474 CDC6 Cdc6-related prot 98.7 2E-07 4.3E-12 86.0 13.3 116 190-308 18-135 (366)
13 PTZ00112 origin recognition co 98.7 1.5E-07 3.3E-12 93.1 11.9 120 188-308 754-881 (1164)
14 PF13173 AAA_14: AAA domain 98.7 5.6E-08 1.2E-12 76.4 6.3 96 217-335 3-98 (128)
15 PRK09376 rho transcription ter 98.7 6.9E-08 1.5E-12 88.2 7.7 89 217-307 170-267 (416)
16 PRK04841 transcriptional regul 98.6 4.4E-07 9.5E-12 94.3 13.6 133 189-336 14-162 (903)
17 PF01637 Arch_ATPase: Archaeal 98.6 3.6E-08 7.8E-13 85.3 4.3 44 191-240 1-44 (234)
18 PTZ00202 tuzin; Provisional 98.6 1.2E-06 2.6E-11 80.9 13.8 105 185-303 258-368 (550)
19 PRK05564 DNA polymerase III su 98.5 1.4E-06 3E-11 79.3 12.3 124 189-335 4-132 (313)
20 PRK11331 5-methylcytosine-spec 98.5 1.5E-06 3.2E-11 81.2 12.2 117 189-318 175-295 (459)
21 PRK13342 recombination factor 98.5 5.8E-07 1.3E-11 84.9 9.5 109 189-331 12-124 (413)
22 PRK12402 replication factor C 98.5 1E-06 2.2E-11 81.0 10.6 45 189-239 15-59 (337)
23 TIGR00767 rho transcription te 98.5 3.5E-07 7.5E-12 84.0 7.0 91 216-307 168-266 (415)
24 PRK07003 DNA polymerase III su 98.5 1.7E-06 3.7E-11 85.1 11.8 135 189-336 16-159 (830)
25 PRK14961 DNA polymerase III su 98.4 6.5E-06 1.4E-10 76.4 12.6 135 189-335 16-158 (363)
26 PRK12323 DNA polymerase III su 98.3 6.2E-06 1.3E-10 80.2 12.3 136 189-335 16-163 (700)
27 KOG2227 Pre-initiation complex 98.3 4.9E-06 1.1E-10 76.8 10.8 118 187-307 148-267 (529)
28 TIGR02903 spore_lon_C ATP-depe 98.3 6.9E-06 1.5E-10 81.1 12.5 141 189-335 154-333 (615)
29 TIGR00635 ruvB Holliday juncti 98.3 2.4E-06 5.2E-11 77.5 8.4 50 189-239 4-53 (305)
30 COG2909 MalT ATP-dependent tra 98.3 1.4E-05 3.1E-10 78.8 13.9 130 199-336 25-170 (894)
31 PRK14957 DNA polymerase III su 98.3 7.7E-06 1.7E-10 79.0 11.8 122 189-334 16-157 (546)
32 PRK14949 DNA polymerase III su 98.3 6.7E-06 1.5E-10 82.5 11.6 123 189-335 16-158 (944)
33 PRK14963 DNA polymerase III su 98.3 9.6E-07 2.1E-11 84.9 5.6 140 189-334 14-154 (504)
34 PRK04195 replication factor C 98.3 6E-06 1.3E-10 79.6 10.7 121 189-334 14-138 (482)
35 PRK14960 DNA polymerase III su 98.3 9.4E-06 2E-10 79.1 11.8 135 189-335 15-157 (702)
36 PRK00440 rfc replication facto 98.3 1.5E-05 3.2E-10 72.6 12.7 122 189-334 17-140 (319)
37 PHA02544 44 clamp loader, smal 98.3 8E-06 1.7E-10 74.4 10.7 119 189-335 21-140 (316)
38 COG2256 MGS1 ATPase related to 98.3 5.3E-06 1.2E-10 75.3 9.2 90 214-331 46-136 (436)
39 PRK00080 ruvB Holliday junctio 98.2 3.8E-06 8.3E-11 76.9 8.2 51 188-239 24-74 (328)
40 PRK14958 DNA polymerase III su 98.2 1.4E-05 3E-10 77.2 12.0 123 189-334 16-157 (509)
41 PF05621 TniB: Bacterial TniB 98.2 1.5E-05 3.3E-10 70.5 11.1 108 196-307 44-156 (302)
42 PLN03025 replication factor C 98.2 1.6E-05 3.5E-10 72.5 11.7 124 189-334 13-137 (319)
43 PRK14969 DNA polymerase III su 98.2 2.2E-05 4.7E-10 76.2 13.0 123 189-334 16-157 (527)
44 PF05496 RuvB_N: Holliday junc 98.2 5.1E-06 1.1E-10 70.3 7.4 50 189-239 24-73 (233)
45 KOG2543 Origin recognition com 98.2 1.4E-05 3.1E-10 72.0 10.6 112 188-307 5-126 (438)
46 PRK08691 DNA polymerase III su 98.2 1.8E-05 3.9E-10 77.8 12.1 134 189-335 16-158 (709)
47 PRK13341 recombination factor 98.2 7.9E-06 1.7E-10 81.7 9.7 110 189-332 28-142 (725)
48 PRK14956 DNA polymerase III su 98.2 2.5E-06 5.5E-11 80.5 5.7 138 189-334 18-159 (484)
49 PRK06645 DNA polymerase III su 98.2 2.4E-05 5.2E-10 75.1 12.4 136 189-333 21-165 (507)
50 TIGR03420 DnaA_homol_Hda DnaA 98.2 4.5E-06 9.7E-11 72.2 6.7 55 194-256 22-76 (226)
51 PRK06893 DNA replication initi 98.2 3.1E-06 6.8E-11 73.4 5.6 37 217-255 40-76 (229)
52 PRK07994 DNA polymerase III su 98.1 1.7E-05 3.7E-10 78.0 11.1 135 189-335 16-158 (647)
53 PRK14951 DNA polymerase III su 98.1 3.2E-05 6.9E-10 75.9 12.6 137 189-334 16-162 (618)
54 KOG2028 ATPase related to the 98.1 1.2E-05 2.7E-10 72.0 8.5 94 215-331 161-254 (554)
55 PRK14962 DNA polymerase III su 98.1 2.8E-05 6.1E-10 74.3 11.6 46 189-239 14-59 (472)
56 PRK14955 DNA polymerase III su 98.1 3.3E-05 7.2E-10 72.6 11.4 139 189-333 16-164 (397)
57 PRK07940 DNA polymerase III su 98.1 4.7E-05 1E-09 71.1 11.8 139 189-335 5-156 (394)
58 PF00004 AAA: ATPase family as 98.1 1.1E-05 2.3E-10 63.3 6.5 21 219-239 1-21 (132)
59 PRK05896 DNA polymerase III su 98.0 4.1E-05 8.9E-10 74.4 11.1 133 189-333 16-156 (605)
60 PRK14964 DNA polymerase III su 98.0 6.1E-05 1.3E-09 71.9 11.9 123 189-334 13-154 (491)
61 PF05673 DUF815: Protein of un 98.0 5.2E-05 1.1E-09 65.2 10.2 122 186-335 24-149 (249)
62 TIGR01242 26Sp45 26S proteasom 98.0 2.2E-05 4.9E-10 72.9 8.3 53 187-239 120-179 (364)
63 smart00382 AAA ATPases associa 98.0 5E-05 1.1E-09 59.5 9.3 88 217-309 3-91 (148)
64 PRK09111 DNA polymerase III su 98.0 6.7E-05 1.5E-09 73.6 11.7 136 189-333 24-169 (598)
65 PRK08116 hypothetical protein; 98.0 3.3E-05 7.1E-10 68.5 8.6 103 217-335 115-220 (268)
66 PRK07764 DNA polymerase III su 98.0 7.8E-05 1.7E-09 75.7 12.2 131 189-334 15-158 (824)
67 TIGR02397 dnaX_nterm DNA polym 98.0 0.00013 2.9E-09 67.4 13.0 46 189-239 14-59 (355)
68 TIGR00678 holB DNA polymerase 97.9 0.00018 3.8E-09 60.4 12.0 41 295-335 95-135 (188)
69 PRK14950 DNA polymerase III su 97.9 4.3E-05 9.2E-10 75.4 9.1 135 189-334 16-158 (585)
70 PRK10536 hypothetical protein; 97.9 0.00017 3.7E-09 62.7 11.1 131 189-332 55-209 (262)
71 PRK14952 DNA polymerase III su 97.9 0.00021 4.5E-09 69.9 12.9 133 189-333 13-155 (584)
72 PRK08118 topology modulation p 97.9 8E-06 1.7E-10 67.2 2.5 34 218-251 3-37 (167)
73 PRK14970 DNA polymerase III su 97.9 0.00026 5.5E-09 66.0 12.6 46 189-239 17-62 (367)
74 PRK08727 hypothetical protein; 97.8 8.7E-05 1.9E-09 64.5 8.7 36 217-254 42-77 (233)
75 TIGR02881 spore_V_K stage V sp 97.8 0.00014 3E-09 64.4 10.2 50 190-239 7-65 (261)
76 PRK14954 DNA polymerase III su 97.8 0.00019 4.2E-09 70.6 11.9 141 189-334 16-165 (620)
77 PRK14965 DNA polymerase III su 97.8 0.0002 4.4E-09 70.4 12.1 134 189-334 16-157 (576)
78 PRK14959 DNA polymerase III su 97.8 0.00019 4E-09 70.3 11.6 134 189-334 16-157 (624)
79 PF13177 DNA_pol3_delta2: DNA 97.8 0.00037 8.1E-09 56.9 11.6 121 193-336 1-142 (162)
80 PRK14953 DNA polymerase III su 97.8 0.00032 6.9E-09 67.4 12.8 46 189-239 16-61 (486)
81 PRK03992 proteasome-activating 97.8 7.6E-05 1.6E-09 69.9 8.2 52 188-239 130-188 (389)
82 PF04665 Pox_A32: Poxvirus A32 97.8 4.6E-05 1E-09 65.8 6.2 36 217-254 14-49 (241)
83 PRK14971 DNA polymerase III su 97.8 0.00033 7.2E-09 69.2 12.9 122 189-334 17-159 (614)
84 PRK07471 DNA polymerase III su 97.8 0.00039 8.4E-09 64.4 12.6 140 188-336 18-181 (365)
85 cd01123 Rad51_DMC1_radA Rad51_ 97.8 8.9E-05 1.9E-09 64.4 7.9 91 215-306 18-125 (235)
86 PRK08451 DNA polymerase III su 97.8 0.00044 9.5E-09 66.8 12.9 120 189-335 14-156 (535)
87 PRK08939 primosomal protein Dn 97.7 0.00018 4E-09 64.9 9.4 121 193-334 135-259 (306)
88 PF00308 Bac_DnaA: Bacterial d 97.7 0.00015 3.2E-09 62.4 8.3 125 191-335 11-139 (219)
89 CHL00181 cbbX CbbX; Provisiona 97.7 0.00055 1.2E-08 61.3 12.2 23 217-239 60-82 (287)
90 KOG2004 Mitochondrial ATP-depe 97.7 0.0018 4E-08 63.2 15.9 105 188-307 410-516 (906)
91 PRK08181 transposase; Validate 97.7 0.0001 2.2E-09 65.2 7.0 98 218-335 108-208 (269)
92 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00013 2.8E-09 74.8 8.8 136 189-334 566-717 (852)
93 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0003 6.4E-09 72.5 11.4 125 189-323 565-694 (852)
94 TIGR02639 ClpA ATP-dependent C 97.7 0.00029 6.4E-09 71.4 11.1 121 189-322 454-579 (731)
95 PRK09112 DNA polymerase III su 97.7 0.00072 1.6E-08 62.3 12.7 139 187-334 21-179 (351)
96 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00017 3.8E-09 73.9 9.4 45 189-239 187-231 (852)
97 PRK08084 DNA replication initi 97.7 0.00021 4.6E-09 62.2 8.4 23 217-239 46-68 (235)
98 PRK07133 DNA polymerase III su 97.7 0.00058 1.3E-08 67.9 12.2 132 189-333 18-155 (725)
99 KOG1514 Origin recognition com 97.7 0.00034 7.4E-09 67.9 10.1 143 189-333 396-546 (767)
100 PRK05642 DNA replication initi 97.6 0.00024 5.2E-09 61.8 8.4 37 216-254 45-81 (234)
101 PRK06305 DNA polymerase III su 97.6 0.00057 1.2E-08 65.2 11.7 46 189-239 17-62 (451)
102 PRK05563 DNA polymerase III su 97.6 0.001 2.2E-08 65.3 13.5 133 189-333 16-156 (559)
103 PRK10865 protein disaggregatio 97.6 0.00033 7.2E-09 72.0 10.5 124 189-322 568-696 (857)
104 PRK09087 hypothetical protein; 97.6 0.00016 3.4E-09 62.5 7.0 24 216-239 44-67 (226)
105 PRK06647 DNA polymerase III su 97.6 0.00089 1.9E-08 65.5 12.9 130 189-333 16-156 (563)
106 COG0542 clpA ATP-binding subun 97.6 0.00025 5.4E-09 70.6 9.0 120 189-323 491-620 (786)
107 smart00763 AAA_PrkA PrkA AAA d 97.6 6.7E-05 1.4E-09 68.4 4.7 52 189-240 51-102 (361)
108 PRK12377 putative replication 97.6 0.00022 4.8E-09 62.3 7.8 100 217-334 102-204 (248)
109 PF01695 IstB_IS21: IstB-like 97.6 9.8E-05 2.1E-09 61.3 5.2 98 217-334 48-148 (178)
110 COG2607 Predicted ATPase (AAA+ 97.6 0.002 4.3E-08 55.0 12.9 122 187-336 58-183 (287)
111 TIGR02880 cbbX_cfxQ probable R 97.6 0.00079 1.7E-08 60.3 11.3 22 218-239 60-81 (284)
112 PRK14948 DNA polymerase III su 97.6 0.001 2.2E-08 65.8 12.5 136 189-334 16-159 (620)
113 PRK06526 transposase; Provisio 97.6 0.00019 4.2E-09 63.0 6.7 99 217-335 99-200 (254)
114 PRK06921 hypothetical protein; 97.6 0.00045 9.7E-09 61.2 9.1 37 216-254 117-154 (266)
115 CHL00095 clpC Clp protease ATP 97.6 0.00028 6E-09 72.5 8.8 45 189-239 179-223 (821)
116 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00081 1.8E-08 59.5 10.7 56 196-264 9-64 (262)
117 TIGR00602 rad24 checkpoint pro 97.5 0.00027 5.8E-09 69.7 8.1 51 188-239 83-133 (637)
118 PRK10865 protein disaggregatio 97.5 0.0003 6.5E-09 72.3 8.9 45 189-239 178-222 (857)
119 TIGR02639 ClpA ATP-dependent C 97.5 0.00033 7.1E-09 71.0 9.0 45 189-239 182-226 (731)
120 PF07728 AAA_5: AAA domain (dy 97.5 6.1E-05 1.3E-09 59.8 3.0 88 219-320 2-89 (139)
121 PRK09361 radB DNA repair and r 97.5 0.00033 7.1E-09 60.5 7.7 88 215-306 22-117 (225)
122 CHL00095 clpC Clp protease ATP 97.5 0.00073 1.6E-08 69.4 11.3 125 189-323 509-638 (821)
123 PRK12608 transcription termina 97.5 0.00072 1.6E-08 62.1 9.5 102 198-306 120-230 (380)
124 PRK08903 DnaA regulatory inact 97.5 0.00044 9.5E-09 59.8 7.9 24 216-239 42-65 (227)
125 COG0470 HolB ATPase involved i 97.5 0.0013 2.7E-08 60.0 11.3 125 190-335 2-148 (325)
126 PF02562 PhoH: PhoH-like prote 97.5 0.00077 1.7E-08 56.9 9.0 127 193-332 4-152 (205)
127 PRK07952 DNA replication prote 97.5 0.0009 1.9E-08 58.3 9.7 101 216-334 99-203 (244)
128 TIGR02237 recomb_radB DNA repa 97.5 0.00041 9E-09 59.1 7.4 88 215-306 11-107 (209)
129 PRK14087 dnaA chromosomal repl 97.5 0.00072 1.6E-08 64.5 9.6 104 216-334 141-247 (450)
130 PRK06835 DNA replication prote 97.4 0.00026 5.7E-09 64.5 6.2 101 217-334 184-287 (329)
131 PRK06620 hypothetical protein; 97.4 0.00033 7.1E-09 60.0 6.4 23 217-239 45-67 (214)
132 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00065 1.4E-08 70.0 9.7 45 189-239 173-217 (852)
133 COG1373 Predicted ATPase (AAA+ 97.4 0.0011 2.3E-08 62.4 10.3 92 218-335 39-130 (398)
134 PF08423 Rad51: Rad51; InterP 97.4 0.00037 8.1E-09 61.4 6.8 90 215-305 37-142 (256)
135 PRK08058 DNA polymerase III su 97.4 0.0017 3.7E-08 59.5 11.3 134 190-335 6-149 (329)
136 TIGR00362 DnaA chromosomal rep 97.4 0.00053 1.2E-08 64.7 8.1 100 216-334 136-240 (405)
137 TIGR00763 lon ATP-dependent pr 97.4 0.0019 4.2E-08 65.9 12.5 51 189-239 320-370 (775)
138 PRK11034 clpA ATP-dependent Cl 97.4 0.0001 2.2E-09 74.2 3.2 44 190-239 187-230 (758)
139 PRK14088 dnaA chromosomal repl 97.4 0.00057 1.2E-08 65.0 7.9 75 216-307 130-205 (440)
140 KOG0989 Replication factor C, 97.4 0.00069 1.5E-08 59.7 7.6 127 189-333 36-166 (346)
141 PF13207 AAA_17: AAA domain; P 97.4 0.00016 3.5E-09 55.8 3.3 22 218-239 1-22 (121)
142 PRK13531 regulatory ATPase Rav 97.4 0.00066 1.4E-08 64.3 7.8 43 189-239 20-62 (498)
143 PRK10787 DNA-binding ATP-depen 97.4 0.0056 1.2E-07 62.3 15.0 52 188-239 321-372 (784)
144 PRK07261 topology modulation p 97.4 0.00049 1.1E-08 56.8 6.3 54 218-271 2-56 (171)
145 PRK04296 thymidine kinase; Pro 97.3 0.00053 1.1E-08 57.6 6.5 113 217-336 3-116 (190)
146 PRK09183 transposase/IS protei 97.3 0.00066 1.4E-08 59.9 7.3 23 217-239 103-125 (259)
147 PF00158 Sigma54_activat: Sigm 97.3 0.00059 1.3E-08 56.1 6.5 131 191-335 1-143 (168)
148 cd01120 RecA-like_NTPases RecA 97.3 0.0012 2.7E-08 53.2 8.1 40 218-259 1-40 (165)
149 COG2255 RuvB Holliday junction 97.3 0.00023 5.1E-09 62.0 3.8 50 189-239 26-75 (332)
150 cd01393 recA_like RecA is a b 97.3 0.0017 3.7E-08 56.0 9.2 92 215-307 18-125 (226)
151 cd00983 recA RecA is a bacter 97.3 0.00068 1.5E-08 61.4 6.9 85 215-306 54-143 (325)
152 PRK11034 clpA ATP-dependent Cl 97.3 0.0013 2.7E-08 66.5 9.4 119 190-321 459-582 (758)
153 TIGR03689 pup_AAA proteasome A 97.3 0.00081 1.7E-08 64.6 7.6 51 189-239 182-239 (512)
154 PRK11889 flhF flagellar biosyn 97.3 0.004 8.6E-08 57.6 11.7 24 215-238 240-263 (436)
155 TIGR02238 recomb_DMC1 meiotic 97.3 0.0007 1.5E-08 61.3 6.7 91 215-306 95-201 (313)
156 TIGR02012 tigrfam_recA protein 97.3 0.0008 1.7E-08 60.9 7.0 86 214-306 53-143 (321)
157 PRK04301 radA DNA repair and r 97.3 0.0011 2.3E-08 60.5 7.9 91 215-306 101-208 (317)
158 COG1484 DnaC DNA replication p 97.3 0.0012 2.6E-08 58.0 8.0 81 216-314 105-185 (254)
159 cd03247 ABCC_cytochrome_bd The 97.2 0.00087 1.9E-08 55.6 6.7 23 217-239 29-51 (178)
160 PRK00149 dnaA chromosomal repl 97.2 0.0011 2.3E-08 63.6 7.9 73 216-307 148-222 (450)
161 cd03214 ABC_Iron-Siderophores_ 97.2 0.0018 4E-08 53.8 8.3 115 217-335 26-157 (180)
162 PF00448 SRP54: SRP54-type pro 97.2 0.00095 2.1E-08 56.3 6.5 23 217-239 2-24 (196)
163 PLN03187 meiotic recombination 97.2 0.00093 2E-08 61.1 6.9 91 215-306 125-231 (344)
164 PRK14086 dnaA chromosomal repl 97.2 0.001 2.2E-08 65.0 7.4 100 217-335 315-419 (617)
165 PRK12422 chromosomal replicati 97.2 0.002 4.2E-08 61.4 9.3 102 215-335 140-244 (445)
166 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0013 2.8E-08 59.8 7.7 91 215-306 95-201 (316)
167 PRK09354 recA recombinase A; P 97.2 0.0011 2.5E-08 60.5 7.4 86 214-306 58-148 (349)
168 COG0593 DnaA ATPase involved i 97.2 0.0059 1.3E-07 56.8 11.8 101 215-335 112-217 (408)
169 PRK07399 DNA polymerase III su 97.2 0.0059 1.3E-07 55.4 11.7 140 189-335 4-162 (314)
170 PRK05541 adenylylsulfate kinas 97.2 0.00077 1.7E-08 55.8 5.5 36 215-252 6-41 (176)
171 PRK15455 PrkA family serine pr 97.2 0.00035 7.6E-09 67.2 3.7 50 190-239 77-126 (644)
172 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0029 6.3E-08 60.8 9.5 98 188-306 189-292 (802)
173 CHL00176 ftsH cell division pr 97.1 0.0024 5.2E-08 63.3 9.4 98 189-307 183-286 (638)
174 PRK06696 uridine kinase; Valid 97.1 0.0008 1.7E-08 58.1 5.3 44 193-239 2-45 (223)
175 PF14532 Sigma54_activ_2: Sigm 97.1 0.00075 1.6E-08 53.5 4.7 107 192-335 1-109 (138)
176 PRK08233 hypothetical protein; 97.1 0.0024 5.1E-08 53.0 8.0 24 216-239 3-26 (182)
177 PF13604 AAA_30: AAA domain; P 97.1 0.0007 1.5E-08 57.2 4.5 103 217-332 19-127 (196)
178 PTZ00454 26S protease regulato 97.1 0.0031 6.8E-08 59.1 9.1 52 188-239 144-202 (398)
179 cd01394 radB RadB. The archaea 97.1 0.0023 5E-08 54.9 7.6 88 215-306 18-113 (218)
180 cd03238 ABC_UvrA The excision 97.1 0.0038 8.3E-08 51.6 8.6 111 216-336 21-149 (176)
181 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0031 6.7E-08 55.7 8.3 88 217-306 70-173 (274)
182 TIGR03499 FlhF flagellar biosy 97.0 0.0037 8.1E-08 55.9 9.0 86 215-305 193-281 (282)
183 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0046 1E-07 49.4 8.6 23 217-239 27-49 (144)
184 COG0466 Lon ATP-dependent Lon 97.0 0.0006 1.3E-08 66.5 4.0 105 188-307 322-428 (782)
185 cd03216 ABC_Carb_Monos_I This 97.0 0.0026 5.6E-08 52.0 7.2 111 217-335 27-141 (163)
186 cd03222 ABC_RNaseL_inhibitor T 97.0 0.004 8.7E-08 51.6 8.3 23 217-239 26-48 (177)
187 COG2812 DnaX DNA polymerase II 97.0 0.0016 3.5E-08 62.3 6.6 135 189-335 16-158 (515)
188 TIGR02236 recomb_radA DNA repa 97.0 0.003 6.5E-08 57.4 8.2 92 215-307 94-203 (310)
189 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0063 1.4E-07 49.9 9.3 111 217-335 28-147 (166)
190 PF05659 RPW8: Arabidopsis bro 97.0 0.02 4.3E-07 45.7 11.7 83 5-87 3-86 (147)
191 COG0572 Udk Uridine kinase [Nu 96.9 0.0024 5.2E-08 54.1 6.5 26 214-239 6-31 (218)
192 COG0468 RecA RecA/RadA recombi 96.9 0.0048 1E-07 54.6 8.6 91 214-307 58-152 (279)
193 cd01131 PilT Pilus retraction 96.9 0.0013 2.8E-08 55.6 4.8 107 217-335 2-108 (198)
194 PTZ00361 26 proteosome regulat 96.9 0.0011 2.3E-08 62.7 4.7 51 189-239 183-240 (438)
195 PRK06067 flagellar accessory p 96.9 0.0059 1.3E-07 53.0 9.0 87 215-306 24-130 (234)
196 PRK05707 DNA polymerase III su 96.9 0.0089 1.9E-07 54.6 10.5 42 295-336 105-146 (328)
197 PRK05703 flhF flagellar biosyn 96.9 0.012 2.6E-07 55.7 11.7 23 216-238 221-243 (424)
198 COG0563 Adk Adenylate kinase a 96.9 0.0021 4.6E-08 53.3 5.8 22 218-239 2-23 (178)
199 cd03228 ABCC_MRP_Like The MRP 96.9 0.0031 6.7E-08 51.9 6.8 23 217-239 29-51 (171)
200 PTZ00035 Rad51 protein; Provis 96.9 0.0046 9.9E-08 56.7 8.4 93 214-307 116-224 (337)
201 KOG1969 DNA replication checkp 96.9 0.0042 9.1E-08 60.9 8.3 87 213-318 323-409 (877)
202 PHA02244 ATPase-like protein 96.9 0.012 2.5E-07 54.1 10.8 22 218-239 121-142 (383)
203 TIGR01241 FtsH_fam ATP-depende 96.9 0.006 1.3E-07 59.2 9.5 52 188-239 54-111 (495)
204 PRK13695 putative NTPase; Prov 96.9 0.00056 1.2E-08 56.6 2.1 22 218-239 2-23 (174)
205 PLN03186 DNA repair protein RA 96.9 0.0075 1.6E-07 55.3 9.4 91 215-306 122-228 (342)
206 PRK00771 signal recognition pa 96.8 0.016 3.5E-07 54.9 11.7 25 215-239 94-118 (437)
207 KOG0991 Replication factor C, 96.8 0.0063 1.4E-07 51.8 7.9 44 189-238 27-70 (333)
208 TIGR00959 ffh signal recogniti 96.8 0.0098 2.1E-07 56.2 10.1 24 215-238 98-121 (428)
209 PRK14722 flhF flagellar biosyn 96.8 0.006 1.3E-07 56.4 8.4 24 216-239 137-160 (374)
210 cd02025 PanK Pantothenate kina 96.8 0.007 1.5E-07 52.1 8.3 22 218-239 1-22 (220)
211 COG1875 NYN ribonuclease and A 96.8 0.013 2.7E-07 53.2 10.0 129 193-333 228-385 (436)
212 PRK12724 flagellar biosynthesi 96.8 0.0082 1.8E-07 56.1 9.3 23 216-238 223-245 (432)
213 cd03246 ABCC_Protease_Secretio 96.8 0.0042 9.2E-08 51.2 6.6 23 217-239 29-51 (173)
214 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0013 2.9E-08 56.3 3.6 23 216-238 29-51 (213)
215 KOG0734 AAA+-type ATPase conta 96.8 0.0062 1.3E-07 57.7 8.1 52 189-240 304-361 (752)
216 PF13238 AAA_18: AAA domain; P 96.7 0.0012 2.6E-08 51.2 3.0 21 219-239 1-21 (129)
217 KOG2228 Origin recognition com 96.7 0.0083 1.8E-07 53.8 8.4 114 189-307 24-148 (408)
218 PRK05480 uridine/cytidine kina 96.7 0.0015 3.3E-08 55.6 3.8 25 215-239 5-29 (209)
219 TIGR00554 panK_bact pantothena 96.7 0.012 2.6E-07 52.6 9.6 25 214-238 60-84 (290)
220 PRK10867 signal recognition pa 96.7 0.013 2.8E-07 55.4 10.1 25 214-238 98-122 (433)
221 PF00485 PRK: Phosphoribulokin 96.7 0.0013 2.9E-08 55.3 3.3 81 218-300 1-87 (194)
222 PTZ00301 uridine kinase; Provi 96.7 0.0035 7.7E-08 53.4 5.8 23 216-238 3-25 (210)
223 PF00154 RecA: recA bacterial 96.7 0.0056 1.2E-07 55.3 7.3 86 215-307 52-142 (322)
224 PF12775 AAA_7: P-loop contain 96.7 0.0013 2.8E-08 58.5 3.1 34 199-239 23-56 (272)
225 PRK09270 nucleoside triphospha 96.7 0.013 2.8E-07 50.8 9.2 26 214-239 31-56 (229)
226 PF07693 KAP_NTPase: KAP famil 96.7 0.016 3.4E-07 52.9 10.2 42 196-240 3-44 (325)
227 PRK07667 uridine kinase; Provi 96.7 0.0032 6.9E-08 53.0 5.2 38 198-239 3-40 (193)
228 TIGR01243 CDC48 AAA family ATP 96.7 0.0029 6.2E-08 64.4 5.8 51 189-239 178-235 (733)
229 COG4608 AppF ABC-type oligopep 96.7 0.0082 1.8E-07 52.4 7.7 90 216-308 39-139 (268)
230 KOG1051 Chaperone HSP104 and r 96.6 0.019 4.2E-07 58.3 11.3 118 190-321 563-685 (898)
231 TIGR00235 udk uridine kinase. 96.6 0.0019 4.1E-08 55.0 3.7 25 215-239 5-29 (207)
232 PRK05439 pantothenate kinase; 96.6 0.018 3.9E-07 52.0 9.9 26 213-238 83-108 (311)
233 PRK12727 flagellar biosynthesi 96.6 0.015 3.2E-07 56.0 9.7 24 215-238 349-372 (559)
234 cd03229 ABC_Class3 This class 96.6 0.0049 1.1E-07 51.1 5.9 22 217-238 27-48 (178)
235 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.003 6.4E-08 57.4 4.8 52 188-239 60-111 (358)
236 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0062 1.4E-07 50.2 6.5 113 217-335 27-154 (173)
237 PF13671 AAA_33: AAA domain; P 96.6 0.0019 4.1E-08 51.3 3.3 22 218-239 1-22 (143)
238 PRK06002 fliI flagellum-specif 96.6 0.012 2.5E-07 55.7 8.9 87 217-306 166-264 (450)
239 PRK15429 formate hydrogenlyase 96.6 0.012 2.7E-07 59.4 9.8 133 189-335 376-520 (686)
240 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.004 8.8E-08 50.4 5.1 117 217-336 3-138 (159)
241 PRK12723 flagellar biosynthesi 96.6 0.024 5.1E-07 52.9 10.7 25 215-239 173-197 (388)
242 cd03215 ABC_Carb_Monos_II This 96.6 0.0069 1.5E-07 50.4 6.5 23 217-239 27-49 (182)
243 COG0714 MoxR-like ATPases [Gen 96.6 0.0063 1.4E-07 55.8 6.8 109 190-320 25-136 (329)
244 TIGR02974 phageshock_pspF psp 96.5 0.011 2.4E-07 54.1 8.3 45 191-239 1-45 (329)
245 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.011 2.5E-07 51.3 7.9 117 217-335 31-198 (254)
246 cd03213 ABCG_EPDR ABCG transpo 96.5 0.021 4.5E-07 48.1 9.1 23 217-239 36-58 (194)
247 PRK11608 pspF phage shock prot 96.5 0.012 2.6E-07 53.9 8.2 132 189-334 6-149 (326)
248 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0066 1.4E-07 49.2 5.9 110 217-335 26-139 (157)
249 PRK09519 recA DNA recombinatio 96.5 0.0097 2.1E-07 59.9 8.0 85 215-306 59-148 (790)
250 PRK06871 DNA polymerase III su 96.5 0.049 1.1E-06 49.6 11.9 125 197-335 10-146 (325)
251 TIGR02858 spore_III_AA stage I 96.5 0.016 3.4E-07 51.4 8.4 124 197-335 97-228 (270)
252 PLN00020 ribulose bisphosphate 96.5 0.0077 1.7E-07 55.1 6.5 26 214-239 146-171 (413)
253 cd02019 NK Nucleoside/nucleoti 96.5 0.0025 5.4E-08 44.0 2.7 22 218-239 1-22 (69)
254 KOG0735 AAA+-type ATPase [Post 96.5 0.0074 1.6E-07 59.1 6.7 70 216-306 431-504 (952)
255 PRK08769 DNA polymerase III su 96.4 0.051 1.1E-06 49.4 11.8 41 295-335 112-152 (319)
256 PRK06090 DNA polymerase III su 96.4 0.053 1.1E-06 49.2 11.9 41 295-335 107-147 (319)
257 cd01122 GP4d_helicase GP4d_hel 96.4 0.047 1E-06 48.4 11.6 51 216-269 30-80 (271)
258 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.02 4.4E-07 49.8 9.0 88 215-307 20-137 (237)
259 PRK06762 hypothetical protein; 96.4 0.0028 6.2E-08 51.8 3.4 23 217-239 3-25 (166)
260 COG0488 Uup ATPase components 96.4 0.0052 1.1E-07 59.6 5.5 118 217-336 349-496 (530)
261 cd03232 ABC_PDR_domain2 The pl 96.4 0.017 3.6E-07 48.6 7.9 22 217-238 34-55 (192)
262 cd03115 SRP The signal recogni 96.4 0.031 6.7E-07 46.0 9.4 22 218-239 2-23 (173)
263 cd03369 ABCC_NFT1 Domain 2 of 96.4 0.045 9.8E-07 46.5 10.6 22 217-238 35-56 (207)
264 COG1618 Predicted nucleotide k 96.4 0.0039 8.4E-08 50.0 3.5 24 216-239 5-28 (179)
265 PRK14974 cell division protein 96.4 0.031 6.6E-07 51.2 9.9 25 215-239 139-163 (336)
266 cd03244 ABCC_MRP_domain2 Domai 96.4 0.032 6.9E-07 47.9 9.6 22 217-238 31-52 (221)
267 cd02024 NRK1 Nicotinamide ribo 96.4 0.007 1.5E-07 50.5 5.3 22 218-239 1-22 (187)
268 PRK05022 anaerobic nitric oxid 96.3 0.02 4.4E-07 55.7 9.3 134 188-335 186-331 (509)
269 PRK06547 hypothetical protein; 96.3 0.0039 8.6E-08 51.4 3.7 25 215-239 14-38 (172)
270 PTZ00088 adenylate kinase 1; P 96.3 0.0054 1.2E-07 53.0 4.6 22 218-239 8-29 (229)
271 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0034 7.3E-08 52.4 3.3 25 215-239 2-26 (188)
272 PF03969 AFG1_ATPase: AFG1-lik 96.3 0.011 2.4E-07 54.7 6.9 103 214-336 60-167 (362)
273 TIGR01817 nifA Nif-specific re 96.3 0.017 3.7E-07 56.6 8.6 134 187-334 194-339 (534)
274 PRK03839 putative kinase; Prov 96.3 0.0034 7.4E-08 52.1 3.1 22 218-239 2-23 (180)
275 PF07724 AAA_2: AAA domain (Cd 96.3 0.0067 1.4E-07 50.0 4.8 40 216-256 3-42 (171)
276 TIGR01425 SRP54_euk signal rec 96.3 0.031 6.7E-07 52.7 9.6 24 215-238 99-122 (429)
277 cd03217 ABC_FeS_Assembly ABC-t 96.2 0.019 4E-07 48.6 7.5 23 217-239 27-49 (200)
278 PF00910 RNA_helicase: RNA hel 96.2 0.0031 6.6E-08 47.7 2.3 21 219-239 1-21 (107)
279 cd02023 UMPK Uridine monophosp 96.2 0.0033 7.1E-08 53.1 2.6 22 218-239 1-22 (198)
280 KOG0744 AAA+-type ATPase [Post 96.2 0.026 5.6E-07 50.4 8.1 79 216-305 177-259 (423)
281 COG1223 Predicted ATPase (AAA+ 96.2 0.0061 1.3E-07 52.7 4.1 53 188-240 120-175 (368)
282 PF08433 KTI12: Chromatin asso 96.2 0.016 3.5E-07 51.4 6.9 23 217-239 2-24 (270)
283 TIGR00708 cobA cob(I)alamin ad 96.2 0.025 5.5E-07 46.4 7.5 117 217-336 6-140 (173)
284 COG4618 ArpD ABC-type protease 96.2 0.051 1.1E-06 51.5 10.4 21 217-237 363-383 (580)
285 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0096 2.1E-07 46.7 4.9 41 196-240 6-46 (133)
286 PRK10820 DNA-binding transcrip 96.2 0.022 4.7E-07 55.6 8.4 134 189-335 204-348 (520)
287 PF14516 AAA_35: AAA-like doma 96.2 0.1 2.3E-06 47.8 12.5 111 188-307 10-138 (331)
288 TIGR02868 CydC thiol reductant 96.2 0.06 1.3E-06 52.8 11.6 23 216-238 361-383 (529)
289 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.027 5.8E-07 49.8 8.2 41 215-257 35-75 (259)
290 PRK04040 adenylate kinase; Pro 96.1 0.0049 1.1E-07 51.6 3.4 23 217-239 3-25 (188)
291 TIGR02322 phosphon_PhnN phosph 96.1 0.0047 1E-07 51.2 3.2 23 217-239 2-24 (179)
292 PF00006 ATP-synt_ab: ATP synt 96.1 0.018 3.9E-07 49.2 6.8 83 217-305 16-114 (215)
293 PRK12726 flagellar biosynthesi 96.1 0.071 1.5E-06 49.3 10.9 25 215-239 205-229 (407)
294 COG2884 FtsE Predicted ATPase 96.1 0.072 1.5E-06 44.2 9.7 55 282-336 141-197 (223)
295 TIGR01243 CDC48 AAA family ATP 96.1 0.02 4.4E-07 58.3 8.3 52 188-239 452-510 (733)
296 TIGR01420 pilT_fam pilus retra 96.1 0.019 4.1E-07 52.9 7.4 106 217-334 123-228 (343)
297 PRK00131 aroK shikimate kinase 96.1 0.0051 1.1E-07 50.5 3.3 24 216-239 4-27 (175)
298 PRK08699 DNA polymerase III su 96.1 0.046 1E-06 49.9 9.7 24 215-238 20-43 (325)
299 cd01121 Sms Sms (bacterial rad 96.1 0.029 6.2E-07 52.2 8.5 83 216-306 82-168 (372)
300 TIGR03498 FliI_clade3 flagella 96.1 0.023 5E-07 53.5 7.9 87 217-307 141-241 (418)
301 COG3903 Predicted ATPase [Gene 96.1 0.0018 3.9E-08 59.5 0.5 113 215-335 13-126 (414)
302 TIGR03263 guanyl_kin guanylate 96.1 0.0048 1E-07 51.1 3.1 23 217-239 2-24 (180)
303 PRK08972 fliI flagellum-specif 96.1 0.027 5.9E-07 53.0 8.2 86 217-306 163-262 (444)
304 cd01125 repA Hexameric Replica 96.1 0.038 8.2E-07 48.1 8.8 21 218-238 3-23 (239)
305 PRK08149 ATP synthase SpaL; Va 96.1 0.024 5.2E-07 53.4 7.9 87 217-307 152-252 (428)
306 PRK14721 flhF flagellar biosyn 96.1 0.047 1E-06 51.4 9.8 24 215-238 190-213 (420)
307 PRK06964 DNA polymerase III su 96.1 0.068 1.5E-06 49.0 10.7 42 295-336 131-172 (342)
308 TIGR03522 GldA_ABC_ATP gliding 96.1 0.044 9.5E-07 49.5 9.4 23 217-239 29-51 (301)
309 PRK05917 DNA polymerase III su 96.1 0.13 2.9E-06 45.9 12.1 41 295-335 94-134 (290)
310 PRK00625 shikimate kinase; Pro 96.1 0.005 1.1E-07 50.8 2.9 22 218-239 2-23 (173)
311 PF08477 Miro: Miro-like prote 96.1 0.0056 1.2E-07 46.8 3.1 22 219-240 2-23 (119)
312 PRK09280 F0F1 ATP synthase sub 96.0 0.029 6.2E-07 53.3 8.2 89 217-306 145-248 (463)
313 TIGR00390 hslU ATP-dependent p 96.0 0.029 6.3E-07 52.4 8.1 51 189-239 12-70 (441)
314 PRK00889 adenylylsulfate kinas 96.0 0.007 1.5E-07 50.0 3.8 24 216-239 4-27 (175)
315 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0046 1E-07 51.4 2.6 22 218-239 1-22 (183)
316 PRK14723 flhF flagellar biosyn 96.0 0.065 1.4E-06 54.0 11.0 24 216-239 185-208 (767)
317 PRK08927 fliI flagellum-specif 96.0 0.025 5.3E-07 53.4 7.6 87 216-306 158-258 (442)
318 PRK05922 type III secretion sy 96.0 0.048 1E-06 51.5 9.5 86 217-306 158-257 (434)
319 PRK10751 molybdopterin-guanine 96.0 0.0074 1.6E-07 49.6 3.7 25 215-239 5-29 (173)
320 PRK06995 flhF flagellar biosyn 96.0 0.066 1.4E-06 51.3 10.5 24 216-239 256-279 (484)
321 PHA00729 NTP-binding motif con 96.0 0.011 2.4E-07 50.6 4.8 25 215-239 16-40 (226)
322 KOG0924 mRNA splicing factor A 96.0 0.05 1.1E-06 53.1 9.6 125 196-334 359-508 (1042)
323 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.0095 2.1E-07 50.6 4.4 22 217-238 30-51 (204)
324 COG0464 SpoVK ATPases of the A 96.0 0.015 3.2E-07 56.5 6.2 72 214-306 274-345 (494)
325 PRK13765 ATP-dependent proteas 96.0 0.013 2.8E-07 58.1 5.8 74 189-272 31-104 (637)
326 TIGR02788 VirB11 P-type DNA tr 96.0 0.02 4.4E-07 51.9 6.7 23 217-239 145-167 (308)
327 cd00984 DnaB_C DnaB helicase C 96.0 0.061 1.3E-06 46.8 9.6 49 216-267 13-61 (242)
328 PF03205 MobB: Molybdopterin g 95.9 0.0071 1.5E-07 48.1 3.3 39 217-256 1-39 (140)
329 PRK04328 hypothetical protein; 95.9 0.025 5.3E-07 49.7 6.9 41 215-257 22-62 (249)
330 PF12061 DUF3542: Protein of u 95.9 0.015 3.2E-07 51.4 5.4 75 13-87 298-373 (402)
331 cd00227 CPT Chloramphenicol (C 95.9 0.0064 1.4E-07 50.3 3.1 23 217-239 3-25 (175)
332 COG0467 RAD55 RecA-superfamily 95.9 0.02 4.3E-07 50.6 6.4 88 214-306 21-134 (260)
333 PRK12597 F0F1 ATP synthase sub 95.9 0.024 5.2E-07 53.9 7.2 88 217-305 144-246 (461)
334 PRK00300 gmk guanylate kinase; 95.9 0.007 1.5E-07 51.3 3.3 24 216-239 5-28 (205)
335 cd02021 GntK Gluconate kinase 95.9 0.0057 1.2E-07 49.1 2.7 22 218-239 1-22 (150)
336 PRK07993 DNA polymerase III su 95.9 0.13 2.9E-06 47.1 11.8 125 197-335 10-147 (334)
337 TIGR00064 ftsY signal recognit 95.9 0.058 1.2E-06 48.0 9.2 25 215-239 71-95 (272)
338 cd02020 CMPK Cytidine monophos 95.9 0.0058 1.2E-07 48.6 2.6 22 218-239 1-22 (147)
339 COG3899 Predicted ATPase [Gene 95.9 0.027 5.8E-07 58.1 8.0 47 190-239 1-47 (849)
340 cd01136 ATPase_flagellum-secre 95.9 0.059 1.3E-06 49.0 9.3 86 217-306 70-169 (326)
341 COG1131 CcmA ABC-type multidru 95.9 0.018 3.9E-07 51.9 5.9 23 216-238 31-53 (293)
342 COG0542 clpA ATP-binding subun 95.9 0.0094 2E-07 59.7 4.4 44 189-238 170-213 (786)
343 cd02028 UMPK_like Uridine mono 95.9 0.006 1.3E-07 50.7 2.7 22 218-239 1-22 (179)
344 PRK00279 adk adenylate kinase; 95.9 0.056 1.2E-06 46.2 8.7 22 218-239 2-23 (215)
345 PRK06217 hypothetical protein; 95.9 0.0067 1.5E-07 50.6 2.9 23 218-240 3-25 (183)
346 PRK05201 hslU ATP-dependent pr 95.9 0.031 6.8E-07 52.3 7.5 51 189-239 15-73 (443)
347 PF07726 AAA_3: ATPase family 95.9 0.0084 1.8E-07 46.4 3.1 27 219-247 2-28 (131)
348 COG1102 Cmk Cytidylate kinase 95.9 0.0067 1.4E-07 48.6 2.7 22 218-239 2-23 (179)
349 KOG1532 GTPase XAB1, interacts 95.8 0.0085 1.9E-07 52.1 3.4 27 214-240 17-43 (366)
350 PRK07594 type III secretion sy 95.8 0.033 7.1E-07 52.6 7.6 87 216-306 155-255 (433)
351 PRK03846 adenylylsulfate kinas 95.8 0.0096 2.1E-07 50.3 3.8 25 215-239 23-47 (198)
352 PRK13545 tagH teichoic acids e 95.8 0.066 1.4E-06 51.8 9.7 23 217-239 51-73 (549)
353 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.079 1.7E-06 45.6 9.4 23 216-238 31-53 (222)
354 PRK15064 ABC transporter ATP-b 95.8 0.097 2.1E-06 51.3 11.2 23 217-239 28-50 (530)
355 PRK11160 cysteine/glutathione 95.8 0.066 1.4E-06 53.0 10.1 23 216-238 366-388 (574)
356 PRK13949 shikimate kinase; Pro 95.8 0.0076 1.6E-07 49.6 2.9 22 218-239 3-24 (169)
357 cd01135 V_A-ATPase_B V/A-type 95.8 0.037 7.9E-07 48.9 7.3 90 217-306 70-176 (276)
358 PRK10078 ribose 1,5-bisphospho 95.8 0.0081 1.8E-07 50.2 3.1 23 217-239 3-25 (186)
359 cd00544 CobU Adenosylcobinamid 95.8 0.032 7E-07 45.8 6.6 79 219-305 2-82 (169)
360 smart00534 MUTSac ATPase domai 95.8 0.044 9.5E-07 45.7 7.5 21 218-238 1-21 (185)
361 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.038 8.1E-07 48.8 7.3 87 217-307 70-172 (274)
362 PF03193 DUF258: Protein of un 95.8 0.016 3.5E-07 46.9 4.6 36 195-239 23-58 (161)
363 PF00625 Guanylate_kin: Guanyl 95.8 0.013 2.9E-07 48.7 4.3 36 216-253 2-37 (183)
364 KOG0733 Nuclear AAA ATPase (VC 95.7 0.071 1.5E-06 51.6 9.4 97 190-307 512-615 (802)
365 COG1428 Deoxynucleoside kinase 95.7 0.0088 1.9E-07 50.2 3.1 24 216-239 4-27 (216)
366 PRK15453 phosphoribulokinase; 95.7 0.073 1.6E-06 47.2 8.9 78 215-295 4-89 (290)
367 KOG0066 eIF2-interacting prote 95.7 0.042 9.1E-07 51.1 7.6 23 216-238 613-635 (807)
368 PRK09099 type III secretion sy 95.7 0.041 8.9E-07 52.1 7.8 88 216-306 163-263 (441)
369 COG1126 GlnQ ABC-type polar am 95.7 0.014 3E-07 49.3 4.1 23 216-238 28-50 (240)
370 PF01583 APS_kinase: Adenylyls 95.7 0.012 2.5E-07 47.5 3.6 88 216-305 2-108 (156)
371 cd00071 GMPK Guanosine monopho 95.7 0.008 1.7E-07 47.6 2.7 22 218-239 1-22 (137)
372 COG1936 Predicted nucleotide k 95.7 0.008 1.7E-07 48.8 2.6 20 218-237 2-21 (180)
373 cd03243 ABC_MutS_homologs The 95.7 0.005 1.1E-07 52.2 1.6 22 217-238 30-51 (202)
374 TIGR02768 TraA_Ti Ti-type conj 95.7 0.099 2.1E-06 53.3 10.9 102 218-332 370-473 (744)
375 PRK13947 shikimate kinase; Pro 95.7 0.0088 1.9E-07 49.1 2.9 22 218-239 3-24 (171)
376 PRK08533 flagellar accessory p 95.7 0.072 1.6E-06 46.1 8.7 48 216-267 24-71 (230)
377 KOG3347 Predicted nucleotide k 95.7 0.017 3.8E-07 45.6 4.3 70 216-296 7-76 (176)
378 PRK12678 transcription termina 95.7 0.048 1E-06 52.8 8.1 86 217-306 417-513 (672)
379 cd00820 PEPCK_HprK Phosphoenol 95.7 0.011 2.5E-07 44.3 3.1 22 216-237 15-36 (107)
380 PRK05800 cobU adenosylcobinami 95.7 0.039 8.4E-07 45.4 6.6 81 218-305 3-85 (170)
381 PRK11388 DNA-binding transcrip 95.6 0.051 1.1E-06 54.5 8.7 130 189-335 325-466 (638)
382 PF06309 Torsin: Torsin; Inte 95.6 0.027 5.8E-07 43.5 5.2 47 190-239 26-76 (127)
383 PRK14530 adenylate kinase; Pro 95.6 0.0093 2E-07 51.1 3.0 22 218-239 5-26 (215)
384 PTZ00185 ATPase alpha subunit; 95.6 0.083 1.8E-06 50.6 9.5 91 217-307 190-300 (574)
385 PF13481 AAA_25: AAA domain; P 95.6 0.087 1.9E-06 44.0 8.9 41 217-257 33-81 (193)
386 cd00464 SK Shikimate kinase (S 95.6 0.0095 2.1E-07 47.8 2.9 21 219-239 2-22 (154)
387 PRK05688 fliI flagellum-specif 95.6 0.04 8.6E-07 52.2 7.4 86 217-306 169-268 (451)
388 PRK14738 gmk guanylate kinase; 95.6 0.012 2.6E-07 50.1 3.6 24 215-238 12-35 (206)
389 COG0194 Gmk Guanylate kinase [ 95.6 0.018 4E-07 47.4 4.4 25 216-240 4-28 (191)
390 COG1124 DppF ABC-type dipeptid 95.6 0.01 2.2E-07 50.9 3.1 23 216-238 33-55 (252)
391 PHA02774 E1; Provisional 95.6 0.045 9.7E-07 53.1 7.7 38 197-239 420-457 (613)
392 TIGR00764 lon_rel lon-related 95.6 0.043 9.3E-07 54.5 7.9 72 189-271 18-90 (608)
393 CHL00081 chlI Mg-protoporyphyr 95.6 0.017 3.6E-07 53.1 4.6 47 187-239 15-61 (350)
394 PRK14737 gmk guanylate kinase; 95.6 0.012 2.7E-07 49.1 3.5 25 215-239 3-27 (186)
395 PRK10923 glnG nitrogen regulat 95.6 0.04 8.8E-07 53.0 7.6 47 189-239 138-184 (469)
396 COG1066 Sms Predicted ATP-depe 95.6 0.047 1E-06 50.4 7.4 83 216-307 93-179 (456)
397 TIGR03575 selen_PSTK_euk L-ser 95.6 0.047 1E-06 50.0 7.4 21 219-239 2-22 (340)
398 TIGR01069 mutS2 MutS2 family p 95.6 0.0079 1.7E-07 61.2 2.7 23 216-238 322-344 (771)
399 PRK13975 thymidylate kinase; P 95.6 0.012 2.5E-07 49.5 3.3 23 217-239 3-25 (196)
400 PRK06936 type III secretion sy 95.6 0.051 1.1E-06 51.3 7.7 87 216-306 162-262 (439)
401 PF03308 ArgK: ArgK protein; 95.6 0.03 6.6E-07 48.7 5.8 63 197-263 14-76 (266)
402 TIGR01313 therm_gnt_kin carboh 95.5 0.0088 1.9E-07 48.7 2.4 21 219-239 1-21 (163)
403 cd00046 DEXDc DEAD-like helica 95.5 0.044 9.6E-07 42.4 6.4 36 218-253 2-37 (144)
404 PF01078 Mg_chelatase: Magnesi 95.5 0.025 5.4E-07 47.7 5.1 42 189-238 3-44 (206)
405 TIGR02655 circ_KaiC circadian 95.5 0.065 1.4E-06 51.9 8.6 87 215-306 262-363 (484)
406 cd01130 VirB11-like_ATPase Typ 95.5 0.025 5.4E-07 47.3 5.1 36 197-239 13-48 (186)
407 PRK07196 fliI flagellum-specif 95.5 0.043 9.3E-07 51.8 7.0 24 216-239 155-178 (434)
408 PF03266 NTPase_1: NTPase; In 95.5 0.012 2.5E-07 48.4 2.9 21 219-239 2-22 (168)
409 PF00005 ABC_tran: ABC transpo 95.5 0.013 2.7E-07 46.1 3.0 22 217-238 12-33 (137)
410 PF06745 KaiC: KaiC; InterPro 95.5 0.041 8.8E-07 47.5 6.4 87 215-305 18-124 (226)
411 cd02027 APSK Adenosine 5'-phos 95.5 0.011 2.4E-07 47.5 2.6 22 218-239 1-22 (149)
412 CHL00195 ycf46 Ycf46; Provisio 95.5 0.03 6.5E-07 53.9 6.1 51 189-239 228-282 (489)
413 COG2019 AdkA Archaeal adenylat 95.5 0.015 3.2E-07 46.9 3.3 24 216-239 4-27 (189)
414 COG1116 TauB ABC-type nitrate/ 95.5 0.013 2.7E-07 50.6 3.1 22 217-238 30-51 (248)
415 cd02029 PRK_like Phosphoribulo 95.5 0.062 1.3E-06 47.2 7.4 77 218-296 1-84 (277)
416 TIGR02546 III_secr_ATP type II 95.4 0.095 2.1E-06 49.6 9.3 87 216-306 145-245 (422)
417 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.083 1.8E-06 45.6 8.3 113 215-334 19-164 (229)
418 TIGR00073 hypB hydrogenase acc 95.4 0.014 3.1E-07 49.6 3.5 27 213-239 19-45 (207)
419 PRK05986 cob(I)alamin adenolsy 95.4 0.027 5.8E-07 46.9 4.9 119 216-335 22-157 (191)
420 PRK12339 2-phosphoglycerate ki 95.4 0.015 3.2E-07 49.1 3.5 24 216-239 3-26 (197)
421 smart00487 DEXDc DEAD-like hel 95.4 0.044 9.6E-07 45.3 6.4 22 217-238 25-47 (201)
422 PRK07721 fliI flagellum-specif 95.4 0.1 2.2E-06 49.5 9.4 24 216-239 158-181 (438)
423 TIGR03375 type_I_sec_LssB type 95.4 0.13 2.7E-06 52.3 10.8 23 216-238 491-513 (694)
424 TIGR01041 ATP_syn_B_arch ATP s 95.4 0.061 1.3E-06 51.2 7.8 90 217-306 142-248 (458)
425 PRK05057 aroK shikimate kinase 95.4 0.014 3E-07 48.2 3.1 23 217-239 5-27 (172)
426 PRK14527 adenylate kinase; Pro 95.4 0.015 3.1E-07 48.9 3.4 24 216-239 6-29 (191)
427 PRK13409 putative ATPase RIL; 95.4 0.067 1.5E-06 53.0 8.4 23 217-239 366-388 (590)
428 PRK06793 fliI flagellum-specif 95.4 0.079 1.7E-06 50.0 8.4 89 216-307 156-257 (432)
429 PRK06731 flhF flagellar biosyn 95.4 0.18 3.9E-06 44.7 10.3 23 216-238 75-97 (270)
430 PRK09435 membrane ATPase/prote 95.4 0.16 3.6E-06 46.3 10.3 25 215-239 55-79 (332)
431 COG4133 CcmA ABC-type transpor 95.4 0.23 5.1E-06 41.1 9.9 22 217-238 29-50 (209)
432 TIGR03305 alt_F1F0_F1_bet alte 95.3 0.055 1.2E-06 51.2 7.2 89 217-306 139-242 (449)
433 COG1222 RPT1 ATP-dependent 26S 95.3 0.035 7.7E-07 50.3 5.6 51 189-239 151-208 (406)
434 PRK11823 DNA repair protein Ra 95.3 0.085 1.8E-06 50.4 8.6 84 215-306 79-166 (446)
435 COG3640 CooC CO dehydrogenase 95.3 0.03 6.4E-07 47.8 4.8 20 218-237 2-21 (255)
436 PF03215 Rad17: Rad17 cell cyc 95.3 0.03 6.5E-07 54.3 5.5 59 190-253 20-78 (519)
437 TIGR02902 spore_lonB ATP-depen 95.3 0.024 5.1E-07 55.4 4.7 45 189-239 65-109 (531)
438 COG2274 SunT ABC-type bacterio 95.3 0.19 4.1E-06 50.7 11.1 22 217-238 500-521 (709)
439 PRK09825 idnK D-gluconate kina 95.2 0.016 3.6E-07 47.9 3.1 23 217-239 4-26 (176)
440 COG1120 FepC ABC-type cobalami 95.2 0.017 3.7E-07 50.5 3.3 23 216-238 28-50 (258)
441 cd01134 V_A-ATPase_A V/A-type 95.2 0.18 4E-06 46.0 9.8 48 217-268 158-206 (369)
442 TIGR03496 FliI_clade1 flagella 95.2 0.086 1.9E-06 49.6 8.0 86 217-306 138-237 (411)
443 cd04155 Arl3 Arl3 subfamily. 95.2 0.018 4E-07 47.0 3.3 24 216-239 14-37 (173)
444 PRK11147 ABC transporter ATPas 95.2 0.17 3.8E-06 50.7 10.8 23 217-239 30-52 (635)
445 TIGR02030 BchI-ChlI magnesium 95.2 0.032 6.9E-07 51.1 5.1 44 189-238 4-47 (337)
446 COG1100 GTPase SAR1 and relate 95.2 0.015 3.2E-07 49.7 2.8 23 217-239 6-28 (219)
447 PLN02348 phosphoribulokinase 95.2 0.024 5.2E-07 52.5 4.2 26 214-239 47-72 (395)
448 TIGR02857 CydD thiol reductant 95.2 0.16 3.4E-06 49.8 10.3 23 216-238 348-370 (529)
449 TIGR00176 mobB molybdopterin-g 95.2 0.015 3.3E-07 47.0 2.7 22 218-239 1-22 (155)
450 PRK13657 cyclic beta-1,2-gluca 95.2 0.07 1.5E-06 53.0 7.9 23 216-238 361-383 (588)
451 KOG0927 Predicted transporter 95.2 0.085 1.8E-06 50.4 7.8 116 217-334 417-564 (614)
452 KOG0741 AAA+-type ATPase [Post 95.2 0.053 1.2E-06 51.6 6.4 75 213-307 535-609 (744)
453 COG1703 ArgK Putative periplas 95.1 0.028 6.1E-07 49.7 4.3 65 199-267 38-102 (323)
454 PRK04182 cytidylate kinase; Pr 95.1 0.019 4E-07 47.4 3.2 22 218-239 2-23 (180)
455 TIGR01026 fliI_yscN ATPase Fli 95.1 0.093 2E-06 49.8 8.1 23 217-239 164-186 (440)
456 cd04139 RalA_RalB RalA/RalB su 95.1 0.018 3.9E-07 46.4 3.0 22 218-239 2-23 (164)
457 PRK11174 cysteine/glutathione 95.1 0.18 3.9E-06 50.1 10.6 24 216-239 376-399 (588)
458 TIGR00960 3a0501s02 Type II (G 95.1 0.027 5.8E-07 48.2 4.1 22 217-238 30-51 (216)
459 cd01672 TMPK Thymidine monopho 95.1 0.018 3.9E-07 48.3 3.0 22 218-239 2-23 (200)
460 PRK08356 hypothetical protein; 95.1 0.023 4.9E-07 47.9 3.6 21 217-237 6-26 (195)
461 PLN02200 adenylate kinase fami 95.1 0.022 4.8E-07 49.4 3.6 24 216-239 43-66 (234)
462 PF13521 AAA_28: AAA domain; P 95.1 0.016 3.5E-07 47.2 2.6 21 219-239 2-22 (163)
463 KOG0730 AAA+-type ATPase [Post 95.1 0.062 1.3E-06 52.4 6.8 58 187-246 432-496 (693)
464 TIGR01287 nifH nitrogenase iro 95.1 0.016 3.5E-07 51.6 2.8 22 217-238 1-22 (275)
465 PF02367 UPF0079: Uncharacteri 95.1 0.034 7.3E-07 43.0 4.1 24 216-239 15-38 (123)
466 TIGR00416 sms DNA repair prote 95.1 0.13 2.8E-06 49.3 8.9 85 215-307 93-181 (454)
467 TIGR02329 propionate_PrpR prop 95.0 0.076 1.6E-06 51.7 7.4 47 189-239 212-258 (526)
468 PRK13946 shikimate kinase; Pro 95.0 0.019 4.2E-07 47.9 2.9 24 216-239 10-33 (184)
469 PRK14529 adenylate kinase; Pro 95.0 0.094 2E-06 45.1 7.2 21 219-239 3-23 (223)
470 cd01129 PulE-GspE PulE/GspE Th 95.0 0.066 1.4E-06 47.4 6.5 81 217-308 81-161 (264)
471 PRK13236 nitrogenase reductase 95.0 0.023 5E-07 51.3 3.6 25 213-237 3-27 (296)
472 PRK13948 shikimate kinase; Pro 95.0 0.024 5.2E-07 47.2 3.4 24 216-239 10-33 (182)
473 PF01926 MMR_HSR1: 50S ribosom 95.0 0.023 4.9E-07 43.3 3.1 21 219-239 2-22 (116)
474 PF13086 AAA_11: AAA domain; P 95.0 0.049 1.1E-06 46.7 5.6 52 218-269 19-75 (236)
475 PRK10416 signal recognition pa 95.0 0.025 5.4E-07 51.4 3.8 25 215-239 113-137 (318)
476 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.021 4.5E-07 49.0 3.1 23 217-239 31-53 (218)
477 smart00173 RAS Ras subfamily o 95.0 0.021 4.5E-07 46.2 3.0 22 218-239 2-23 (164)
478 PRK08472 fliI flagellum-specif 95.0 0.13 2.7E-06 48.7 8.5 24 216-239 157-180 (434)
479 PRK14532 adenylate kinase; Pro 95.0 0.02 4.3E-07 47.8 2.9 21 219-239 3-23 (188)
480 cd01428 ADK Adenylate kinase ( 95.0 0.02 4.3E-07 47.9 2.9 21 219-239 2-22 (194)
481 TIGR02173 cyt_kin_arch cytidyl 95.0 0.023 4.9E-07 46.5 3.2 22 218-239 2-23 (171)
482 PRK13889 conjugal transfer rel 94.9 0.26 5.6E-06 51.5 11.3 102 218-332 364-467 (988)
483 cd03269 ABC_putative_ATPase Th 94.9 0.032 7E-07 47.5 4.2 23 217-239 27-49 (210)
484 PRK10875 recD exonuclease V su 94.9 0.13 2.8E-06 51.1 8.8 113 217-332 168-298 (615)
485 COG2842 Uncharacterized ATPase 94.9 0.14 3E-06 45.3 8.1 94 217-319 95-188 (297)
486 cd03225 ABC_cobalt_CbiO_domain 94.9 0.024 5.3E-07 48.2 3.4 22 217-238 28-49 (211)
487 cd03265 ABC_DrrA DrrA is the A 94.9 0.033 7.1E-07 47.8 4.2 23 217-239 27-49 (220)
488 PRK10463 hydrogenase nickel in 94.9 0.041 8.9E-07 49.0 4.8 26 214-239 102-127 (290)
489 TIGR03574 selen_PSTK L-seryl-t 94.9 0.018 4E-07 50.5 2.6 22 218-239 1-22 (249)
490 cd03285 ABC_MSH2_euk MutS2 hom 94.9 0.019 4.2E-07 49.4 2.7 23 216-238 30-52 (222)
491 PF10662 PduV-EutP: Ethanolami 94.9 0.023 4.9E-07 45.1 2.8 24 217-240 2-25 (143)
492 PRK07960 fliI flagellum-specif 94.9 0.084 1.8E-06 50.0 7.0 24 216-239 175-198 (455)
493 PRK06820 type III secretion sy 94.9 0.096 2.1E-06 49.6 7.5 23 217-239 164-186 (440)
494 cd01124 KaiC KaiC is a circadi 94.9 0.058 1.3E-06 44.8 5.5 44 219-266 2-45 (187)
495 TIGR01166 cbiO cobalt transpor 94.9 0.023 5E-07 47.5 3.1 22 217-238 19-40 (190)
496 TIGR01192 chvA glucan exporter 94.9 0.23 5.1E-06 49.3 10.6 23 216-238 361-383 (585)
497 cd04119 RJL RJL (RabJ-Like) su 94.9 0.023 5E-07 45.9 3.0 21 219-239 3-23 (168)
498 PF03029 ATP_bind_1: Conserved 94.9 0.02 4.4E-07 49.8 2.7 20 221-240 1-20 (238)
499 cd03116 MobB Molybdenum is an 94.9 0.028 6E-07 45.7 3.3 23 217-239 2-24 (159)
500 PRK03731 aroL shikimate kinase 94.9 0.023 5.1E-07 46.6 3.0 22 218-239 4-25 (171)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-35 Score=292.84 Aligned_cols=287 Identities=29% Similarity=0.434 Sum_probs=222.4
Q ss_pred HHHhhHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 043252 18 NKLASEGIRLFARQGRIKDDLVKWKKKLVTIKAVLDDAEEKKTTDDSVKLWLGELQNLAYDVEDLLDEFQTEAFRRKLLL 97 (337)
Q Consensus 18 ~kl~s~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~ 97 (337)
+++.+.+..++....+.++.+..|++.|..++.+++++++++.....+..|.+.+++++|++||.++.+.......+..+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~ 89 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND 89 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455566677888999999999999999999999999999999999999999999999999999999887654332
Q ss_pred CCCCCCccCCCCCCccccccccccccccccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHHhhccccccccCCCC--cc
Q 043252 98 GNGEPAAAHDQPSSSRTSTKSKFRKLIPTCCPTFTLQSIQFDYSMMSKIKKINDRFRDIEEEIGSLKLIKSSAGGS--KK 175 (337)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~--~~ 175 (337)
.- . ......+.++. ..++++....+..+..++..+.+..+.++......... ..
T Consensus 90 ~l------~---------~~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~ 145 (889)
T KOG4658|consen 90 LL------S---------TRSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD 145 (889)
T ss_pred Hh------h---------hhHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc
Confidence 00 0 00011111111 13456666777777777777777777776443211111 11
Q ss_pred cccccccccCccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEe
Q 043252 176 ARQRRDTTSLVEEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCV 254 (337)
Q Consensus 176 ~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 254 (337)
.....++.+..+... ||.+..++++.+.|..++. .+++|+||||+||||||+.++|+.. ++.+|+.++||+|
T Consensus 146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V 218 (889)
T KOG4658|consen 146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV 218 (889)
T ss_pred chhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE
Confidence 112233334344444 9999999999999987652 7999999999999999999999987 9999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCC-CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 255 SDDFDVIRLTKSILLSIASDQNV-DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 255 ~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
|+.|+...+..+|+..++..... .....+.++..|.+.|.+|||||||||||+. .+|+.+..++|...+||+|++||
T Consensus 219 Sk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 219 SKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred cccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEe
Confidence 99999999999999998774432 2233478999999999999999999999998 68999999999999999999999
Q ss_pred cCCC
Q 043252 334 RNQD 337 (337)
Q Consensus 334 R~~~ 337 (337)
|+++
T Consensus 297 Rs~~ 300 (889)
T KOG4658|consen 297 RSEE 300 (889)
T ss_pred ccHh
Confidence 9863
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=1.1e-24 Score=195.73 Aligned_cols=137 Identities=39% Similarity=0.654 Sum_probs=112.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhC
Q 043252 194 RETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 273 (337)
Q Consensus 194 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~ 273 (337)
||.++++|.++|.... .+.++|+|+|+||+||||||+.+|++..++.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 368999999999999999999999987789999999999999999999999999999987
Q ss_pred CCCC--CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 274 DQNV--DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 274 ~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.... ...+.+.+...+.+.|.+++|||||||||+. ..|+.+...++....||+||||||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCG
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccc
Confidence 7432 4567888999999999999999999999986 68888888888777899999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=2.3e-17 Score=173.26 Aligned_cols=138 Identities=22% Similarity=0.360 Sum_probs=100.5
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe---CCC------
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV---SDD------ 257 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~------ 257 (337)
+...+||++..++++..+|.-. .+..++|+||||||+||||||+.+|+. +..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhccc
Confidence 3456999999999999988533 346899999999999999999999984 7778988877642 111
Q ss_pred -----CC-HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 258 -----FD-VIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 258 -----~~-~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
++ ...+..+++.++........... ..+++.|.++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 11 12344555555543322111122 4577889999999999999886 678888776655678999999
Q ss_pred EecCC
Q 043252 332 TTRNQ 336 (337)
Q Consensus 332 TTR~~ 336 (337)
|||+.
T Consensus 330 TTrd~ 334 (1153)
T PLN03210 330 ITKDK 334 (1153)
T ss_pred EeCcH
Confidence 99975
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=3.1e-10 Score=106.64 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=86.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
.+..++||++++++|...|...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34679999999999999985432 1223446789999999999999999986432222234567777777788899999
Q ss_pred HHHHhhCC-CCCCCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCC
Q 043252 267 ILLSIASD-QNVDNHDLNKLQEELKKQLF--GKKFLLVLDDVWNE 308 (337)
Q Consensus 267 il~~~~~~-~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 308 (337)
++.++... .+....+...+...+.+.+. ++..+||||+++.-
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 99998763 22233456777777777774 45689999999763
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.7e-09 Score=100.60 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=83.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccc-ccc---cceEEEEeCCCCCHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVE-DHF---DLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~ 264 (337)
..++||+.+++.|..+|...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 479999999999999986422 12234578999999999999999999752110 111 135788887777788899
Q ss_pred HHHHHHhhC---CCCCCCCCHHHHHHHHHHHc--CCCeEEEEEeCCCCC
Q 043252 265 KSILLSIAS---DQNVDNHDLNKLQEELKKQL--FGKKFLLVLDDVWNE 308 (337)
Q Consensus 265 ~~il~~~~~---~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 308 (337)
..|+.++.. ..+....+..++...+.+.+ .+++++||||+++.-
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999999842 22212234555666666666 356889999999764
No 6
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=2.2e-09 Score=84.52 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=80.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccc---ccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVE---DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ 292 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 292 (337)
-+++.|+|.+|+|||++++.+.+..... ..-...+|+.++...+...+...|+..+..... ...+...+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4689999999999999999998752110 002346799998888999999999999987765 345677777888888
Q ss_pred cCCC-eEEEEEeCCCCC-ChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 293 LFGK-KFLLVLDDVWNE-NYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 293 L~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+... ..+||||++..- ....++.+...+ + ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 8544 459999999665 444555554433 3 556677776543
No 7
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=3.2e-09 Score=86.94 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=64.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhccccccc----ccceEEEEeCCCCCHH---HHHHHHHHHhhCCCCCCCCCHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDH----FDLKAWTCVSDDFDVI---RLTKSILLSIASDQNVDNHDLNKLQEEL 289 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~l 289 (337)
+++.|+|.+|+||||+++.++..-..... +...+|++........ .+...|..+.... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHHH
Confidence 47899999999999999999875322222 4566777766543322 2333333332211 11111111111
Q ss_pred HHHcCCCeEEEEEeCCCCCCh--h-----cHHHh-hccCCC-CCCCcEEEEEecCC
Q 043252 290 KKQLFGKKFLLVLDDVWNENY--T-----DWVHL-SLPFQA-GAQGSKIIVTTRNQ 336 (337)
Q Consensus 290 ~~~L~~kr~LlVlDdv~~~~~--~-----~~~~l-~~~l~~-~~~gs~iivTTR~~ 336 (337)
....++++||||++.+-.. . .+..+ ...++. ..+++++|||+|..
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 1257899999999965422 1 12222 223332 35689999999975
No 8
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.87 E-value=3.2e-08 Score=78.79 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=70.7
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHh
Q 043252 192 YGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSI 271 (337)
Q Consensus 192 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~ 271 (337)
+|++..++.+...+... ....+.|+|++|+|||+|++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888888998888543 235889999999999999999998532 112345566655433322211111000
Q ss_pred hCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChh---cHHHhhccCCCC---CCCcEEEEEecCC
Q 043252 272 ASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYT---DWVHLSLPFQAG---AQGSKIIVTTRNQ 336 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~---~~gs~iivTTR~~ 336 (337)
............+..+|++||++..... .+..+...+... ..+..||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111112223456789999999854222 222222222221 3577888888753
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.83 E-value=1.4e-08 Score=84.80 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
.|+||+++++++...|. .. .....+.+.|+|.+|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 21 23456899999999999999999998753
No 10
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.79 E-value=9.5e-09 Score=89.63 Aligned_cols=90 Identities=21% Similarity=0.198 Sum_probs=63.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC--CCHHHHHHHHHHHhhCCCCCCCCCH------HHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD--FDVIRLTKSILLSIASDQNVDNHDL------NKLQE 287 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~~~~~~~~~~~~~------~~~~~ 287 (337)
-..+.|+|++|+|||||++.+|++.... +|+..+|+++.+. +++.+++..+...+-.... +.... ....+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~-~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF-DEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecC-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999975444 8999999998777 7899999988443332222 11111 11222
Q ss_pred HHHHH-cCCCeEEEEEeCCCC
Q 043252 288 ELKKQ-LFGKKFLLVLDDVWN 307 (337)
Q Consensus 288 ~l~~~-L~~kr~LlVlDdv~~ 307 (337)
..... -.+++.+|++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 258999999999953
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.73 E-value=3.9e-07 Score=80.97 Aligned_cols=97 Identities=28% Similarity=0.300 Sum_probs=63.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKK----Q 292 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~----~ 292 (337)
..+.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++.... ..+...+...+.. .
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHH
Confidence 488999999999999999999863321 11 12233 33345777888888888765432 2232333333333 2
Q ss_pred -cCCCeEEEEEeCCCCCChhcHHHhhc
Q 043252 293 -LFGKKFLLVLDDVWNENYTDWVHLSL 318 (337)
Q Consensus 293 -L~~kr~LlVlDdv~~~~~~~~~~l~~ 318 (337)
..+++++||+||++......++.+..
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 26788999999999876666766653
No 12
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2e-07 Score=85.95 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=86.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
.+.+|+.+++++...|...-. +....-+.|+|..|.|||+.++.|.+..+....=...++|++-...+...++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 389999999999988865432 222334999999999999999999985322111111789999999999999999999
Q ss_pred HhhCCCCCCCCCHHHHHHHHHHHc--CCCeEEEEEeCCCCC
Q 043252 270 SIASDQNVDNHDLNKLQEELKKQL--FGKKFLLVLDDVWNE 308 (337)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 308 (337)
.+..... ......+....+.+.+ .++.++||||++...
T Consensus 96 ~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 96 KLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 9973332 4455666667777777 468999999999654
No 13
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=93.08 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=80.9
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc---ccccc--ceEEEEeCCCCCHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---EDHFD--LKAWTCVSDDFDVIR 262 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~ 262 (337)
+..+.||++|+++|...|...-. +.....++.|+|++|.|||++++.|.+.... ..... .+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 36789999999999988864321 1223357889999999999999999865311 11111 356788777777888
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC---CCeEEEEEeCCCCC
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQLF---GKKFLLVLDDVWNE 308 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~ 308 (337)
++..|..++....+............+...+. +...+||||+|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 99999988855443333333444555555442 23458999999653
No 14
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=5.6e-08 Score=76.36 Aligned_cols=96 Identities=23% Similarity=0.228 Sum_probs=62.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
+++.|.|+.|+|||||++.++.+.. ....+++++..+....... ..+ +.+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 5899999999999999999987532 2345667766553221100 000 223333334347
Q ss_pred eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..+|+||++... ..|......+.+..+..+|++|+.+
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccc
Confidence 788999999665 5787776666665556789999865
No 15
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.65 E-value=6.9e-08 Score=88.17 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=60.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC--CHHHHHHHHHHHhhCCCCCCCCCHHH------HHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQNVDNHDLNK------LQEE 288 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~il~~~~~~~~~~~~~~~~------~~~~ 288 (337)
.-..|+|++|+||||||+.+|++.... +|++++||.+.+.+ ++.+++..+...+-.... +.....+ ..+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHHH
Confidence 478899999999999999999975444 89999999999887 677777777632222221 1111111 1111
Q ss_pred HHHH-cCCCeEEEEEeCCCC
Q 043252 289 LKKQ-LFGKKFLLVLDDVWN 307 (337)
Q Consensus 289 l~~~-L~~kr~LlVlDdv~~ 307 (337)
-... ..|++.||++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 1121 368999999999943
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=4.4e-07 Score=94.33 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=83.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i 267 (337)
..++-|+.-.+. |.. ....+++.|+|++|.||||++..+... +..++|+++.. ..++..++..+
T Consensus 14 ~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 345666544444 432 124679999999999999999998752 23689999964 44667777888
Q ss_pred HHHhhCCCCC------------CCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhcHHH-hhccCCCCCCCcEEEEE
Q 043252 268 LLSIASDQNV------------DNHDLNKLQEELKKQLF--GKKFLLVLDDVWNENYTDWVH-LSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 268 l~~~~~~~~~------------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivT 332 (337)
+..+...... ...+...+...+...+. +.+++|||||+...+...... +...++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 8777522111 11223334444444442 678999999997654333333 33333334556788899
Q ss_pred ecCC
Q 043252 333 TRNQ 336 (337)
Q Consensus 333 TR~~ 336 (337)
||..
T Consensus 159 sR~~ 162 (903)
T PRK04841 159 SRNL 162 (903)
T ss_pred eCCC
Confidence 9973
No 17
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.61 E-value=3.6e-08 Score=85.34 Aligned_cols=44 Identities=34% Similarity=0.452 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 191 VYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 191 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
|+||+.+++.|.+++.... ...+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 6899999999999997542 3589999999999999999998853
No 18
>PTZ00202 tuzin; Provisional
Probab=98.59 E-value=1.2e-06 Score=80.86 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=72.0
Q ss_pred CccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHH
Q 043252 185 LVEEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 185 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 264 (337)
+.+...|+||+.+...|...|...+. ....++.|.|++|+|||||++.+..... + ..+ +....+..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL--~vNprg~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAV--FVDVRGTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEE--EECCCCHHHHH
Confidence 34567899999999999999965432 2346999999999999999999986422 1 122 22233679999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHc-----C-CCeEEEEEe
Q 043252 265 KSILLSIASDQNVDNHDLNKLQEELKKQL-----F-GKKFLLVLD 303 (337)
Q Consensus 265 ~~il~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlD 303 (337)
..++.+|+.... .....+...|.+.| . |++-+|||-
T Consensus 327 r~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 327 RSVVKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999986322 22233434443333 3 677788775
No 19
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.4e-06 Score=79.30 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=83.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc----cccccccceEEEEe-CCCCCHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK----QVEDHFDLKAWTCV-SDDFDVIRL 263 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~~ 263 (337)
.+++|.+.-++.|..++.... -.+...++|+.|+||||+|+.++..- ....|++...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 457899999999999996443 34588899999999999999887631 12345665555442 22233333
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 264 TKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 264 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.+++.+.+.... ..+++-++|+|++...+...++.|...|.....++.+|++|.+
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 223333332111 1245567778877666667899999999887889999988864
No 20
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.50 E-value=1.5e-06 Score=81.21 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=76.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..+++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|..+.||.+++.++..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45788899999999999743 367889999999999999998865445567888899999988866654321
Q ss_pred HHhhCCCCCCCC-CHHHHHHHHHHHc--CCCeEEEEEeCCCCCChhc-HHHhhc
Q 043252 269 LSIASDQNVDNH-DLNKLQEELKKQL--FGKKFLLVLDDVWNENYTD-WVHLSL 318 (337)
Q Consensus 269 ~~~~~~~~~~~~-~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~-~~~l~~ 318 (337)
..... ... ...-+.+.+.... .+++++||||++...+... +..+..
T Consensus 246 ---rP~~v-gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 246 ---RPNGV-GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred ---CCCCC-CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 11110 110 0011222222222 2468999999997665433 334433
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=5.8e-07 Score=84.88 Aligned_cols=109 Identities=19% Similarity=0.301 Sum_probs=64.7
Q ss_pred cccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKE---IVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..+.. |..++... ....+.++|++|+||||||+.+++.. ...| +.++.......-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHH
Confidence 458888777555 77776432 34578889999999999999998752 2222 22222111111122
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 266 SILLSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
.++. ..... ..+++.+|+||+++.......+.|...+.. |+.+++
T Consensus 79 ~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 79 EVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred HHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 2222 22111 146788999999987765566666655543 444444
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=1e-06 Score=81.02 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|++..++.|..++..+ ..+.+.++|+.|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999988543 2346789999999999999998874
No 23
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.47 E-value=3.5e-07 Score=84.03 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC--CCHHHHHHHHHHHhhCCCCCCCCCH-----HHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD--FDVIRLTKSILLSIASDQNVDNHDL-----NKLQEE 288 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~~~~~~~~~~~~~-----~~~~~~ 288 (337)
-..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.+++..++..+-.......... ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 358999999999999999999986433 37999999999866 7889999988655433332111111 112222
Q ss_pred HHHH-cCCCeEEEEEeCCCC
Q 043252 289 LKKQ-LFGKKFLLVLDDVWN 307 (337)
Q Consensus 289 l~~~-L~~kr~LlVlDdv~~ 307 (337)
.... -+|++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 268999999999953
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.7e-06 Score=85.15 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+.......+. +.++..-.....|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 568999999999999986443 245667999999999999998876422111110 00111001111111
Q ss_pred HH-----hhCCCCCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 269 LS-----IASDQNVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 269 ~~-----~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.. +..+.. .....+++.+.+... ..++.-++|||++...+...|+.|+..|..-....++|+||.+.
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 00 000000 111122222222211 12445588999998877778888888776656677888887653
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.5e-06 Score=76.40 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=73.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-++.+...+.... -...+.++|+.|+||||+|+.+.+.-.....+. ..++..-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 568999999999999886433 245789999999999999999976421111000 00000000011111
Q ss_pred HHhhCC----CCCCCCCHHH---HHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASD----QNVDNHDLNK---LQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~----~~~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
...... ........+. +.+.+... ..+++-++|+|++.......++.+...+.......++|++|.+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 100000 0000011222 11111111 1245569999999877656777887777765666777777643
No 26
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6.2e-06 Score=80.17 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=76.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc---cccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED---HFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~~~~~~~~~~~ 265 (337)
.++||.+.-++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...... .... .+.++..-....
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHH
Confidence 568999999999999997544 245778999999999999998876421100 0000 000000000111
Q ss_pred HHHHHh-----hCCCCCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 266 SILLSI-----ASDQNVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 266 ~il~~~-----~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.|...- ..+.. .....+++.+.+... ..++.-++|||++...+...++.|+..|..-..+.++|++|.+
T Consensus 86 ~I~aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 86 EIDAGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHcCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 111000 00000 111222222222221 1356669999999888778888888888765556676666643
No 27
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=4.9e-06 Score=76.77 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=83.6
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
.+..++||+.|++.+.+|+...- +.+...-+.|.|-+|.|||.+...++.+......=.+++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45789999999999999987543 2345668899999999999999999986432222124577777766677888888
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHHHHcCCC--eEEEEEeCCCC
Q 043252 267 ILLSIASDQNVDNHDLNKLQEELKKQLFGK--KFLLVLDDVWN 307 (337)
Q Consensus 267 il~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~ 307 (337)
|...+..... ......+.+..+.++.... -||+|||..+.
T Consensus 226 I~~~~~q~~~-s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 226 IFSSLLQDLV-SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 8888733322 1222255666666666544 58999999854
No 28
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=6.9e-06 Score=81.14 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc---cceEEEEeCCC---CCHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF---DLKAWTCVSDD---FDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~ 262 (337)
+.++|++..+..+...+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 45889999999888877432 23479999999999999999998764332222 12345544321 12222
Q ss_pred HHHHH---------------HHHhhCCCC---------------CCCCC-HHHHHHHHHHHcCCCeEEEEEeCCCCCChh
Q 043252 263 LTKSI---------------LLSIASDQN---------------VDNHD-LNKLQEELKKQLFGKKFLLVLDDVWNENYT 311 (337)
Q Consensus 263 ~~~~i---------------l~~~~~~~~---------------~~~~~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~ 311 (337)
+...+ +...+.... .+... ....+..+.+.+.+++++++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111110000 00111 134678899999999999998888877667
Q ss_pred cHHHhhccCCCCCCCcEEEE--EecC
Q 043252 312 DWVHLSLPFQAGAQGSKIIV--TTRN 335 (337)
Q Consensus 312 ~~~~l~~~l~~~~~gs~iiv--TTR~ 335 (337)
.|..+...+....+...|++ ||++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRD 333 (615)
T ss_pred cchhhhhhcccCccceEEEEEecccc
Confidence 78888777766555554555 4553
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.30 E-value=2.4e-06 Score=77.47 Aligned_cols=50 Identities=28% Similarity=0.452 Sum_probs=39.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|+|++..++.|..++..... .......+.++|++|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999998864321 1223456889999999999999999875
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.30 E-value=1.4e-05 Score=78.80 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-CCHHHHHHHHHHHhhCCCCC
Q 043252 199 KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQNV 277 (337)
Q Consensus 199 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~~~~~~~~ 277 (337)
..|++.|.. ..+.+.+.|..|+|.|||||+-..... ...=..+.|.++.+. .++..++..++..+..-.+.
T Consensus 25 ~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 345555543 336899999999999999999988741 112235899998764 56788999998888743321
Q ss_pred ------------CCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhcHHH-hhccCCCCCCCcEEEEEecCC
Q 043252 278 ------------DNHDLNKLQEELKKQLF--GKKFLLVLDDVWNENYTDWVH-LSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 278 ------------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTTR~~ 336 (337)
...+...+.+.+..-|. .+.+++||||..--....... +.-.+...+.+-.+|||||++
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 23344555555555543 467899999986543334443 333344556778999999985
No 31
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.7e-06 Score=79.05 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=75.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc-------------------cccce
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED-------------------HFDLK 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 249 (337)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+.+...... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999886433 245678999999999999999976321100 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcE
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSK 328 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 328 (337)
+++.......+. +...+.+.+... ..+++-++|+|++...+...++.|...+......+.
T Consensus 91 ieidaas~~gvd-------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGVE-------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCHH-------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 222221111111 122222222221 235667999999987766778888888876666676
Q ss_pred EEEEec
Q 043252 329 IIVTTR 334 (337)
Q Consensus 329 iivTTR 334 (337)
+|++|-
T Consensus 152 fIL~Tt 157 (546)
T PRK14957 152 FILATT 157 (546)
T ss_pred EEEEEC
Confidence 665553
No 32
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=6.7e-06 Score=82.49 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=75.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccc------ccc-------------e
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDH------FDL-------------K 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~-------------~ 249 (337)
..++|.+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+.-..... +.| .
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 568999999999999986543 2356689999999999999999875211111 000 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcE
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSK 328 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 328 (337)
+++....... ..+...+...+... ..+++-++|||++........+.|+..+..-....+
T Consensus 91 iEidAas~~k-------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRTK-------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEeccccccC-------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1111110011 11122222222211 236677999999988777788888888866555667
Q ss_pred EEEEecC
Q 043252 329 IIVTTRN 335 (337)
Q Consensus 329 iivTTR~ 335 (337)
+|++|.+
T Consensus 152 FILaTTe 158 (944)
T PRK14949 152 FLLATTD 158 (944)
T ss_pred EEEECCC
Confidence 7766543
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=9.6e-07 Score=84.89 Aligned_cols=140 Identities=21% Similarity=0.202 Sum_probs=75.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-.+.|..++.... -...+.++|++|+||||+|+.+.+.......+....|.|.+.. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 468999999999988886543 2457799999999999999999775322222222223221110 0000000000
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
..+............++...+... ..+++-+||||+++......++.|...+......+.+|++|.
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 000000000111112222222211 135666999999987766778888887766555556666553
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=98.27 E-value=6e-06 Score=79.60 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=72.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+..++.|.+|+..... +...+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4689999999999999975431 22367899999999999999999988531 22 222344432222 2333333
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCCh----hcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENY----TDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
........ ....++-+||||++..... ..+..+...+.. ....||+|+.
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n 138 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN 138 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence 32221110 0113677999999976422 235555555543 2345666663
No 35
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=9.4e-06 Score=79.11 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=76.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+.....|..++.... -...+.++|+.|+||||+|+.+.+...... |+.. .+++.-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 568999999999999997543 246889999999999999998876421111 1100 0001000011110
Q ss_pred HHhhCC----CCCCCCCHHHHHHHHHH---H-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASD----QNVDNHDLNKLQEELKK---Q-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~----~~~~~~~~~~~~~~l~~---~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..-... ........+.+.+.+.. . ..+++-++|||++...+....+.|...+.....+.++|++|.+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 000000 00001122222211111 1 1356668999999887667777888777765566778887754
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=1.5e-05 Score=72.60 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=70.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe--CCCCCHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV--SDDFDVIRLTKS 266 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~ 266 (337)
.+++|+++.++.+..++.... .+.+.|+|++|+||||+|+.+.+... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 458899999999999986432 34579999999999999999987521 11121 112222 2222111 1222
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 267 ILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 267 il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
.+..+....+ .-...+-+|++|++..........+...+......+++|+++.
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 2222211110 0012356899999876544455566665554445567777764
No 37
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.25 E-value=8e-06 Score=74.40 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=70.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+...+.+..++.... ...++.++|++|+||||+|+.+++.. ... ...++.+. .. ...+...+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHH
Confidence 568999999999999986432 34688889999999999999998752 111 22334333 11 11122211
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..+.... .+.+.+-+|||||+... .......+...+.....++++|+||..
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 1111000 01134557899999655 223333444444444566788888753
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.25 E-value=5.3e-06 Score=75.27 Aligned_cols=90 Identities=29% Similarity=0.421 Sum_probs=55.0
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH-HHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEEL-KKQ 292 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l-~~~ 292 (337)
..+.-.-+||++|+||||||+.+... ....| ..++-..+-. .++....+.- ...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gv------------------kdlr~i~e~a~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGV------------------KDLREIIEEARKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccH------------------HHHHHHHHHHHHHH
Confidence 35677889999999999999999874 33344 2333222211 2222222222 222
Q ss_pred cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 293 LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 293 L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
..|++.+|.+|.|..-+..+-+.|... -.+|.-|+|
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilI 136 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILI 136 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEE
Confidence 348999999999987654555555443 456766665
No 39
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.24 E-value=3.8e-06 Score=76.93 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=40.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+|+|++..++.+..++..... .+.....+.|+|++|+||||||+.+.+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 35799999999999888864221 1234567889999999999999999885
No 40
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.4e-05 Score=77.18 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=75.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccc-------------------ccce
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDH-------------------FDLK 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 249 (337)
.+++|-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+.--.... |...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 568999999999999996543 2347789999999999999988764211111 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEE
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKI 329 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 329 (337)
+.+..+....++++ ++++..+... -..++.-+++||++........+.+...|......+++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22222222222221 1222221110 01355668999999887777888888888766667777
Q ss_pred EEEec
Q 043252 330 IVTTR 334 (337)
Q Consensus 330 ivTTR 334 (337)
|++|-
T Consensus 153 Ilatt 157 (509)
T PRK14958 153 ILATT 157 (509)
T ss_pred EEEEC
Confidence 77663
No 41
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.21 E-value=1.5e-05 Score=70.49 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc----cccccceEEEEeCCCCCHHHHHHHHHHHh
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV----EDHFDLKAWTCVSDDFDVIRLTKSILLSI 271 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~il~~~ 271 (337)
+-++.|.++|..+. ......+.|||..|.|||++++.++...-. ...--.++.|.+....+...++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 44566777776554 345678999999999999999999864211 11112577888899999999999999999
Q ss_pred hCCCCCCCCCHHHHHHHHHHHcCC-CeEEEEEeCCCC
Q 043252 272 ASDQNVDNHDLNKLQEELKKQLFG-KKFLLVLDDVWN 307 (337)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 307 (337)
+.... .......+.......|+. +-=+||+|++.+
T Consensus 121 gaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 121 GAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 98765 445555555555555532 233889999966
No 42
>PLN03025 replication factor C subunit; Provisional
Probab=98.21 E-value=1.6e-05 Score=72.54 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=69.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccc-eEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL-KAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 267 (337)
.+++|.++.++.|..++... ..+-+.++|++|+||||+|+.+.+... ...|.. ++=++.+...+. +.++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHHH
Confidence 46889888888888877543 234577999999999999999887421 112211 111222222221 122333
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
+..+..... . .-.++.-+++||++..-.......+...+..-...+++|+++.
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC
Confidence 222211100 0 0023466999999987655555566555544345567777664
No 43
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.2e-05 Score=76.22 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc-------------------cccce
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED-------------------HFDLK 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 249 (337)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+...-.... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 568999999999999987543 235678999999999999999865321110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEE
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKI 329 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 329 (337)
+++..+....+.. +++++..+... -..+++-++|+|++........+.|...+......+.+
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 2222111111111 11222211100 01356679999999877666777788777765556667
Q ss_pred EEEec
Q 043252 330 IVTTR 334 (337)
Q Consensus 330 ivTTR 334 (337)
|++|.
T Consensus 153 IL~t~ 157 (527)
T PRK14969 153 ILATT 157 (527)
T ss_pred EEEeC
Confidence 76664
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.20 E-value=5.1e-06 Score=70.35 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=34.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|+|.+.-++.+.-++..... .++.+.-+.+||++|+||||||..+.+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc
Confidence 5799999888887655542211 2345778999999999999999999985
No 45
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.20 E-value=1.4e-05 Score=72.00 Aligned_cols=112 Identities=23% Similarity=0.298 Sum_probs=80.9
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
++.+.+|+.++..+..++...+. .-++.|-|+|-.|.|||.+.+.+.+.... ..+|+++-+.|+...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHH
Confidence 46788999999999999975542 23556789999999999999999986422 36899999999999999999
Q ss_pred HHHhh-CCCCCCC-----CCHHHHHHHHHHH--c--CCCeEEEEEeCCCC
Q 043252 268 LLSIA-SDQNVDN-----HDLNKLQEELKKQ--L--FGKKFLLVLDDVWN 307 (337)
Q Consensus 268 l~~~~-~~~~~~~-----~~~~~~~~~l~~~--L--~~kr~LlVlDdv~~ 307 (337)
+.... ....... .........+.++ . .++.++||||++..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 99985 2222111 1122233333331 1 25689999999954
No 46
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.8e-05 Score=77.77 Aligned_cols=134 Identities=19% Similarity=0.265 Sum_probs=72.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+.-....... + .++..-.....+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 578999999999999997543 245789999999999999998876321111000 0 0000000000000
Q ss_pred HH-----hhCCCCCCCCCHHHHHHHHHH---H-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LS-----IASDQNVDNHDLNKLQEELKK---Q-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~-----~~~~~~~~~~~~~~~~~~l~~---~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.. +..... .....+.+.+.+.. . ..+++-++|||++..........|...+..-...+++|++|.+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd 158 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 00 000000 11122222222211 1 1256668999999776555666777777554456677777643
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=7.9e-06 Score=81.71 Aligned_cols=110 Identities=23% Similarity=0.333 Sum_probs=62.8
Q ss_pred cccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKK---EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
.+|+|.+..+. .|...+... ....+.++|++|+||||||+.+++. ...+|. .++....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~------ 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLA------ 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhh------
Confidence 45889887764 455555432 3456789999999999999999975 333331 1111000
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHc--CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 266 SILLSIASDQNVDNHDLNKLQEELKKQL--FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
...+.........+.+ .+++.+|+|||++.-+...++.|...+. .|+.++++
T Consensus 89 ------------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 89 ------------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred ------------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 0001111112222222 2467799999998765566666665443 35555553
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.5e-06 Score=80.50 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=75.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+.-........ ..+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCC
Confidence 568999999999999986543 2346899999999999999999764211110000 00001011111111000
Q ss_pred HH---hhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LS---IASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~---~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
.. +.........+...+.+.+... ..++.-++|||++.......++.|...+........+|++|.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 00 0000000111222333333222 235566999999988777888888887765444555555553
No 49
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.4e-05 Score=75.13 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=74.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccc-eEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL-KAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 267 (337)
.+++|.+.-+..|...+.... -...+.++|+.|+||||+|+.+++.-.....+.. ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 468999999998888776433 2457889999999999999999764211110000 000000000 000000
Q ss_pred HHHhhCC----CCCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 268 LLSIASD----QNVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 268 l~~~~~~----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
....... ........+.+.+.+... +.+++-++|+|+++......|+.|...+......+.+|++|
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 0000000 000111222222222111 24567799999999877778888888887655666666555
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.16 E-value=4.5e-06 Score=72.15 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC
Q 043252 194 RETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD 256 (337)
Q Consensus 194 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 256 (337)
.+..++.+..++... ....+.|+|+.|+|||+||+.+++... ......++++++.
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHH
Confidence 345667777775422 345899999999999999999987521 2223345555443
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.16 E-value=3.1e-06 Score=73.36 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=26.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVS 255 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 255 (337)
+.+.|+|++|+|||+|++.+++.. ........|+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHH
Confidence 578999999999999999999852 2222334566553
No 52
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=1.7e-05 Score=77.95 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=76.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-+..|...+.... -...+.++|+.|+||||+|+.+.+.......+. ..++..-.....|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 568999999999998886433 235678999999999999999976421111000 00111111111111
Q ss_pred HH-------hhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LS-------IASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~-------~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.. +.........+...+.+.+... ..+++-++|||++...+....+.|...+..-....++|++|.+
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 10 0000000111122222222211 2456679999999887777888888877765556666666544
No 53
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.2e-05 Score=75.86 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=74.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc--cceEEEEeCCCCCHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF--DLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~ 266 (337)
.+++|-+.-+..|.+++.... -...+.++|+.|+||||+|+.+.+.-...... ..... .+++.-.....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 568999998999999987543 24678999999999999999985431110000 00000 00111111111
Q ss_pred HHHHhhCC----CCCCCCCHHHHHHHHHH---H-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 267 ILLSIASD----QNVDNHDLNKLQEELKK---Q-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 267 il~~~~~~----~~~~~~~~~~~~~~l~~---~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
|...-..+ ........+.+.+.+.. . ..++.-++|||++...+...++.|...+.......++|++|.
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 10000000 00011122222222211 1 124455899999988877788888888876556667776653
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.12 E-value=1.2e-05 Score=72.01 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=59.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
.+.-+.+||++|+||||||+.+.+..+... +.+|..|-...-..-.+.|+++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 467888999999999999999988643333 4566666544333334444444321 12345
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
++|-+|.+|.|..-+..+-+.+ ||.-.+|+-++|
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lI 254 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLI 254 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEE
Confidence 7899999999976443333333 454556765554
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.8e-05 Score=74.28 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=36.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+.-...|...+.... -.+.+.++|++|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999888888888776433 2356899999999999999999764
No 56
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.3e-05 Score=72.56 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=74.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE-eCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC-VSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 267 (337)
.+++|.+.-++.|..++.+.. -...+.++|+.|+||||+|+.+.+.-.....+....|.. ...++..-..-..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 568899999999998886433 235688999999999999998876422111111000110 00111100111111
Q ss_pred HHHhhCC----CCCCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 268 LLSIASD----QNVDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 268 l~~~~~~----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
......+ ........+.+.+. .+.+ .+++-++|+|++.......++.+...+.+....+.+|++|
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 1110000 00011112333222 2222 3456688999997766667888888887666677776665
No 57
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=4.7e-05 Score=71.05 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=73.2
Q ss_pred cccccchhHHHHHHHHHhcCCCC----CCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSR----NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 264 (337)
.+++|.+.-++.|..++..+... ...-...+.++|+.|+|||++|+.+...--....- +-++... ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHH
Confidence 46889999999999999764310 01124678899999999999998886531110000 0000000 000
Q ss_pred HHHHHHhhCC----C-CCCCCCHHH---HHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 265 KSILLSIASD----Q-NVDNHDLNK---LQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 265 ~~il~~~~~~----~-~~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..+...-... . .......++ +.+.+... ..+++-++++|++...+....+.|...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 0000000000 0 001111222 22222111 1245568888999877666777777777665566777777654
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.06 E-value=1.1e-05 Score=63.27 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=19.5
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999986
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=4.1e-05 Score=74.40 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=72.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.-. |.-|.... +++.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 568999999999999986543 235788999999999999999876421 11121110 111111111111
Q ss_pred HHhhCCC----CCCCCCHH---HHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 269 LSIASDQ----NVDNHDLN---KLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 269 ~~~~~~~----~~~~~~~~---~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
....... .......+ .+...+... ..+++-++|+|++.......+..|...+......+.+|++|
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 1100000 00011122 222222111 12334469999998766677888887776555566666655
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=6.1e-05 Score=71.89 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=75.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc------ccc-------------ccccce
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK------QVE-------------DHFDLK 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------~~~-------------~~F~~~ 249 (337)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+...- ... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 568999999998888886443 23478999999999999998886521 000 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEE
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKI 329 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 329 (337)
+.++.+....+.+ .+++++.+.... ..+++-++|+|++........+.|...+..-.+.+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~P-----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYLP-----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhcc-----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333332222222 222222221100 1245668999999877666788888888766667777
Q ss_pred EEEec
Q 043252 330 IVTTR 334 (337)
Q Consensus 330 ivTTR 334 (337)
|++|.
T Consensus 150 Ilatt 154 (491)
T PRK14964 150 ILATT 154 (491)
T ss_pred EEEeC
Confidence 77763
No 61
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.02 E-value=5.2e-05 Score=65.16 Aligned_cols=122 Identities=24% Similarity=0.276 Sum_probs=73.2
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 186 VEEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 186 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
+.-..++|.+.+++.|++-...-- .+....-+.++|..|.|||+|++.+.+...-+. .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 445679999999888765432211 122345678899999999999999987422111 111233221
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCC---CCCcEEEEEecC
Q 043252 266 SILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAG---AQGSKIIVTTRN 335 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTTR~ 335 (337)
+..++..+.+.++. ...||+|.+||+..+ ....+..|++.|..+ .+..-+|..|-|
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 23444555555553 357999999999654 234577777766532 233445555544
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.00 E-value=2.2e-05 Score=72.94 Aligned_cols=53 Identities=25% Similarity=0.184 Sum_probs=39.7
Q ss_pred cccccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSR-------NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++.|++..+++|.+.+..+-.. +-...+.+.++|++|+|||+||+.+++.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999998877532110 1123456899999999999999999885
No 63
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.00 E-value=5e-05 Score=59.54 Aligned_cols=88 Identities=19% Similarity=0.057 Sum_probs=46.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..+.|+|++|+||||+++.+..... ......+++..+........... ........ ...........+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999987522 22123455554443322211111 01111111 2222233333444444433
Q ss_pred -eEEEEEeCCCCCC
Q 043252 297 -KFLLVLDDVWNEN 309 (337)
Q Consensus 297 -r~LlVlDdv~~~~ 309 (337)
..+|++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 3899999998753
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=6.7e-05 Score=73.62 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccc--eEEEEeCCCCCHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL--KAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~~~~~ 266 (337)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+.-........ ..+ ..+..-.-...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 578999999999999997543 2457889999999999999999764211110000 000 00000011111
Q ss_pred HHHHhhCCC----CCCCCCHHH---HHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 267 ILLSIASDQ----NVDNHDLNK---LQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 267 il~~~~~~~----~~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
|......+. .......++ +.+.+... ..+++-++|+|++........+.|...|..-..++++|++|
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 111110000 001112222 22222111 12455689999997766667778887777656677777666
No 65
>PRK08116 hypothetical protein; Validated
Probab=97.98 E-value=3.3e-05 Score=68.50 Aligned_cols=103 Identities=26% Similarity=0.281 Sum_probs=57.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..+.++|..|+|||.||..+++.. ...-..+++++ ..+++..+....... ...+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~---~~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSS---GKEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcc---ccccHHH----HHHHhcCC
Confidence 358899999999999999999863 22223345554 344555555444321 1112222 23333332
Q ss_pred eEEEEEeCCCCCChhcHHH--hhccCCC-CCCCcEEEEEecC
Q 043252 297 KFLLVLDDVWNENYTDWVH--LSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTTR~ 335 (337)
. ||||||+......+|.. +...+.. -.+|..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999996543344533 3332221 1345678998863
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=7.8e-05 Score=75.66 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=74.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.......+... .+..-.-...|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~-------pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST-------PCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC-------CCcccHHHHHHH
Confidence 568999999999999997543 23578899999999999999987642211111000 000000000000
Q ss_pred HH---------hhCCCCCCCCCHHHH---HHHHHH-HcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LS---------IASDQNVDNHDLNKL---QEELKK-QLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~---------~~~~~~~~~~~~~~~---~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
.. +... .....+++ .+.+.. -..+++-++|||++.......++.|+..|..-...+.+|++|.
T Consensus 83 ~g~~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 83 PGGPGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred cCCCCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00 0000 11112222 221111 1235555889999988777888888888877666777776663
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.97 E-value=0.00013 Score=67.45 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+..++.|.+++.... -...+.++|++|+||||+|+.+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986433 2457889999999999999888654
No 68
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00018 Score=60.38 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+.+-++|+|++.......++.|...+......+.+|++|.+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 45668999999776666778888888765666777777754
No 69
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=4.3e-05 Score=75.35 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=74.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+.-.....+. ...+++.-.....|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 578999999999998886433 235678999999999999999976421110000 001111112222222
Q ss_pred HHhhCCC----CCCCCCHHHH---HHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LSIASDQ----NVDNHDLNKL---QEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~----~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
....... .......+.+ .+.+... ..+++-+||||++........+.|...+......+.+|++|.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 2111100 0011122222 2222111 124567899999976655667777777765555666666653
No 70
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=0.00017 Score=62.67 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=71.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE----eCC-----CCC
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC----VSD-----DFD 259 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----v~~-----~~~ 259 (337)
..+.++......+..+|.+. .++.+.|+.|.|||+||..+..+.-..+.|+..+-.. +.+ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34667888888888888532 3999999999999999988876422223344332221 111 001
Q ss_pred HHHH----HHHHHHHhhCCCCCCCCCHHHHHH--------HHHHHcCCCeE---EEEEeCCCCCChhcHHHhhccCCCCC
Q 043252 260 VIRL----TKSILLSIASDQNVDNHDLNKLQE--------ELKKQLFGKKF---LLVLDDVWNENYTDWVHLSLPFQAGA 324 (337)
Q Consensus 260 ~~~~----~~~il~~~~~~~~~~~~~~~~~~~--------~l~~~L~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 324 (337)
..+- +.-+...+..-. .....+.+.. .=..+++|+.+ +||+|+..+.+......+...+ +
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---G 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---C
Confidence 1111 111111111100 0001111100 00235567655 9999999887665555555443 5
Q ss_pred CCcEEEEE
Q 043252 325 QGSKIIVT 332 (337)
Q Consensus 325 ~gs~iivT 332 (337)
.+|+||+|
T Consensus 202 ~~sk~v~~ 209 (262)
T PRK10536 202 ENVTVIVN 209 (262)
T ss_pred CCCEEEEe
Confidence 78999986
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00021 Score=69.92 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=74.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+.-....... + .+++.-.....|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 568999999999999997543 245678999999999999998876421111000 0 0000000001110
Q ss_pred HH---------hhCCCCCCCCCHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 269 LS---------IASDQNVDNHDLNKLQEELKKQL-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 269 ~~---------~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
.. +.........+..++.+.+...- .+++-++|||++........+.|...+..-.....+|++|
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 00 00000001111222222222211 3455689999998877778888888887666666666655
No 72
>PRK08118 topology modulation protein; Reviewed
Probab=97.87 E-value=8e-06 Score=67.16 Aligned_cols=34 Identities=38% Similarity=0.638 Sum_probs=27.7
Q ss_pred EEEEEccCCCchHHHHHHHHhccccc-ccccceEE
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVE-DHFDLKAW 251 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 251 (337)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999875443 45777774
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00026 Score=65.98 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+...+.+.+.+.... -.+.+.++|+.|+||||+|+.+.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999996433 2458899999999999999988764
No 74
>PRK08727 hypothetical protein; Validated
Probab=97.84 E-value=8.7e-05 Score=64.51 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=26.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV 254 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 254 (337)
..+.|+|..|+|||+|++.+++.. ........|+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeH
Confidence 459999999999999999998752 222224456653
No 75
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.84 E-value=0.00014 Score=64.37 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHH---HHhc------CCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVE---LLLK------DDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~---~L~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|.+..+++|.+ ++.- ......+...-+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 47888777765543 3311 11112334567889999999999999999764
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00019 Score=70.64 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=74.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE-eCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC-VSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 267 (337)
..++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+.+.-.....++.-.|.. +..++..-.....+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 568999999999999886433 235688999999999999988875421111110000110 00011100111111
Q ss_pred HHHhhCC----CCCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 268 LLSIASD----QNVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 268 l~~~~~~----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
...-..+ ........+++...+... ..+++-++|+|++........+.|...+..-...+.+|++|.
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 1100000 000111223332222111 234555889999977666677788888876555666666553
No 77
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0002 Score=70.37 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=73.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+.-...|..++.... -.+.+.++|+.|+||||+|+.+.+.--....... .+++.-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 578999999999999986543 2456789999999999999988764211110000 0000000001110
Q ss_pred HH-------hhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LS-------IASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~-------~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
.. +.........+..++.+.+... ..+++-++|+|++...+....+.|...|..-...+.+|++|.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 00 0000000111222222222211 124555899999987766777888887766555666666553
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00019 Score=70.26 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=72.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+.+..-....... .+++.-.....|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 468899888888888886432 2457889999999999999988764211110000 0111111111111
Q ss_pred HHhhCCC----CCCCCCHHH---HHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LSIASDQ----NVDNHDLNK---LQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~----~~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
....... .......+. +.+.+... ..+++-+||||++.......++.|...+..-.....+|++|.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 1100000 000111222 22222111 135667999999987766777888877765444556666554
No 79
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.82 E-value=0.00037 Score=56.94 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=73.1
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccc------------------ccccceEEEEe
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVE------------------DHFDLKAWTCV 254 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~v 254 (337)
|-++..+.|...+.+.. -...+.++|+.|+||+++|..+.+.---. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777776543 24578999999999999998876531111 11222333332
Q ss_pred CCC---CCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 255 SDD---FDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 255 ~~~---~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
... ...+++. ++...+..... .+++=++|||++.....+.+..|+..+..-...+.+|+
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 221 2222222 33333322111 23456899999988888899999998887778899999
Q ss_pred EecCC
Q 043252 332 TTRNQ 336 (337)
Q Consensus 332 TTR~~ 336 (337)
+|.+.
T Consensus 138 ~t~~~ 142 (162)
T PF13177_consen 138 ITNNP 142 (162)
T ss_dssp EES-G
T ss_pred EECCh
Confidence 98764
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00032 Score=67.43 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+.-...|.+++.... -...+.++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999996543 2356778999999999999988653
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.80 E-value=7.6e-05 Score=69.93 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=39.0
Q ss_pred ccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++.|++..+++|.+.+..+-. -+-...+-|.++|++|+|||++|+.+++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 45789999999999887643110 01133567899999999999999999874
No 82
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=4.6e-05 Score=65.78 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=28.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV 254 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 254 (337)
-.++|+|..|+|||||...+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36889999999999999998865 6667876666643
No 83
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00033 Score=69.19 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=73.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc---------------------ccccc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---------------------EDHFD 247 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 247 (337)
..++|.+...+.|..++.... -...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 568999999999999996543 2457889999999999999887653210 11222
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCc
Q 043252 248 LKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGS 327 (337)
Q Consensus 248 ~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 327 (337)
. ..+.........+ +++++.++.... ..+++=++|+|++.......++.|...+..-...+
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 1122211111111 112222211100 12445588999998776678888888887656667
Q ss_pred EEEEEec
Q 043252 328 KIIVTTR 334 (337)
Q Consensus 328 ~iivTTR 334 (337)
.+|++|.
T Consensus 153 ifIL~tt 159 (614)
T PRK14971 153 IFILATT 159 (614)
T ss_pred EEEEEeC
Confidence 7666553
No 84
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00039 Score=64.40 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=78.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceE------EEEeCCCCCHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKA------WTCVSDDFDVI 261 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~v~~~~~~~ 261 (337)
-.+++|.+.....|.+.+.... -...+.++|+.|+||+|+|..+...---........ -..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3578999999999999987543 245799999999999999977754311111000000 00000000
Q ss_pred HHHHHHHHHhhCC---------CC----CCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCC
Q 043252 262 RLTKSILLSIASD---------QN----VDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAG 323 (337)
Q Consensus 262 ~~~~~il~~~~~~---------~~----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 323 (337)
...+.+...-..+ .. ......++ ...+.+.+ .+.+-++|||++...+....+.|...+..-
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111100000 00 01112333 22333333 255669999999888778888888888765
Q ss_pred CCCcEEEEEecCC
Q 043252 324 AQGSKIIVTTRNQ 336 (337)
Q Consensus 324 ~~gs~iivTTR~~ 336 (337)
..++.+|++|.+.
T Consensus 169 p~~~~~IL~t~~~ 181 (365)
T PRK07471 169 PARSLFLLVSHAP 181 (365)
T ss_pred CCCeEEEEEECCc
Confidence 5667778777653
No 85
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.78 E-value=8.9e-05 Score=64.45 Aligned_cols=91 Identities=24% Similarity=0.215 Sum_probs=55.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhccccccc----ccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCC-
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDH----FDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHD- 281 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~- 281 (337)
.-.++.|+|++|+|||+|+.+++-....... ...++|++....++..++.. +++....... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999988643222221 35789999888877655443 3333221110 01122
Q ss_pred --HHHHHHHHHHHcC-C-CeEEEEEeCCC
Q 043252 282 --LNKLQEELKKQLF-G-KKFLLVLDDVW 306 (337)
Q Consensus 282 --~~~~~~~l~~~L~-~-kr~LlVlDdv~ 306 (337)
...+...+...+. . +--|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2333445555553 3 56699999994
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00044 Score=66.77 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc---cc---cccc-------------e
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---ED---HFDL-------------K 249 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~---~F~~-------------~ 249 (337)
.+++|-+.-.+.|...+.... -.....++|+.|+||||+|+.+.+.--- .+ +..| .
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 568999999999999986433 3457789999999999999977653110 00 0000 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCC
Q 043252 250 AWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQ 325 (337)
Q Consensus 250 ~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 325 (337)
+.+..+.. ...+.+.+.+... ..+++-++|+|++.....+..+.|...+.....
T Consensus 89 ~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 11111111 1122322222210 114556899999988777778888888766566
Q ss_pred CcEEEEEecC
Q 043252 326 GSKIIVTTRN 335 (337)
Q Consensus 326 gs~iivTTR~ 335 (337)
.+++|++|.+
T Consensus 147 ~t~FIL~ttd 156 (535)
T PRK08451 147 YVKFILATTD 156 (535)
T ss_pred ceEEEEEECC
Confidence 6777777643
No 87
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.74 E-value=0.00018 Score=64.93 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhh
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIA 272 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~ 272 (337)
++........+++..-.. .....-+.|+|..|+|||.||..+++... ...+. +.+++++ .++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHHh
Confidence 454455555666653221 12346799999999999999999998632 22232 4455443 45555544442
Q ss_pred CCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHH--hhccC-CCC-CCCcEEEEEec
Q 043252 273 SDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVH--LSLPF-QAG-AQGSKIIVTTR 334 (337)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTTR 334 (337)
. .+... .+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||-
T Consensus 205 ~------~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 D------GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c------CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 12222 2222 2 244599999998766667753 44433 211 23445777774
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.73 E-value=0.00015 Score=62.40 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=66.0
Q ss_pred cccchh-HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 191 VYGRET-EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 191 ~vGr~~-~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
++|-.. ..-.....+.... +.....+.|+|..|+|||.|.+.+++.......=..++|++ ..++...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 456532 2334444444432 12345689999999999999999998532111111244543 4566666666
Q ss_pred HhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCC-hhcHHH-hhccCCC-CCCCcEEEEEecC
Q 043252 270 SIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNEN-YTDWVH-LSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~ 335 (337)
.+.. .... .+++.+. .-=+|+|||+..-. ...|.. +...+.. ...|-+||+|+..
T Consensus 82 ~~~~------~~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 82 ALRD------GEIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHT------TSHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHc------ccch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 6643 1222 2333443 23388999996532 122332 2222211 1346689999854
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.00055 Score=61.35 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.++|++|+||||+|+.++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45888999999999999999764
No 90
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0018 Score=63.18 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=66.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
+.+-+|.++-++.|.+++.-..-+++-+-++++.+|++|+|||.+|+.+..- ....| +-+++.+-.|..++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhh----
Confidence 3456799999999999987544334556789999999999999999999874 33333 22455555554432
Q ss_pred HHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 268 LLSIASDQN--VDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 268 l~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
.++.. ..++ ...+.+.|++. +..+=|+.||.|..
T Consensus 481 ----kGHRRTYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 ----KGHRRTYVGAM-PGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----cccceeeeccC-ChHHHHHHHhh-CCCCceEEeehhhh
Confidence 22221 1222 23334444333 44567889999853
No 91
>PRK08181 transposase; Validated
Probab=97.70 E-value=0.0001 Score=65.25 Aligned_cols=98 Identities=20% Similarity=0.136 Sum_probs=52.4
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCe
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKK 297 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 297 (337)
-+.++|++|+|||.||..+.+.. ......+.|+. ..+++..+.... ...........+ .+-
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~------~~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVAR------RELQLESAIAKL-----DKF 168 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHH------hCCcHHHHHHHH-----hcC
Confidence 58999999999999999998642 11222334443 344555553322 112222222222 133
Q ss_pred EEEEEeCCCCCChhcHH--HhhccCCCC-CCCcEEEEEecC
Q 043252 298 FLLVLDDVWNENYTDWV--HLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 298 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 335 (337)
=||||||+.......|. .+...+... ..+ .+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 49999999654332332 233333211 234 48888764
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.70 E-value=0.00013 Score=74.77 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=76.4
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||.||+.+... +-......+-++++.-.+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----h
Confidence 4689999999999888864211 11334568999999999999999888653 111111122222222111 0
Q ss_pred HHHHHhhCCCCC--CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEE
Q 043252 266 SILLSIASDQNV--DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVT 332 (337)
Q Consensus 266 ~il~~~~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 332 (337)
.-...+.+..+. .......+...+++ ...-+|+||++...++..++.|...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111122222110 11122233444433 345699999998777777777776665442 34556667
Q ss_pred ec
Q 043252 333 TR 334 (337)
Q Consensus 333 TR 334 (337)
|.
T Consensus 716 SN 717 (852)
T TIGR03345 716 SN 717 (852)
T ss_pred CC
Confidence 64
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.0003 Score=72.51 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=72.3
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+.... ...-...+.++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 4689999999999998875321 012235678899999999999999998641 11112233344443222111
Q ss_pred HHHHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCC
Q 043252 266 SILLSIASDQN--VDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAG 323 (337)
Q Consensus 266 ~il~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 323 (337)
...+.+..+ ........+...++. ....+|+||++...++..+..|...|..+
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 112212111 011122233333332 22349999999888888888887777543
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.00029 Score=71.39 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.|...+..... ..+....++.++|+.|+|||+||+.+.... +...+.++++.-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 4578888888888888764211 012235578999999999999999998742 2233455554422111
Q ss_pred HHHHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCC
Q 043252 266 SILLSIASDQN--VDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQA 322 (337)
Q Consensus 266 ~il~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 322 (337)
....+.+... ........+...++. ...-+|+||++...+.+.++.|...|..
T Consensus 525 -~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111111111 012222233333332 2345999999988887888887776654
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00072 Score=62.27 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=78.4
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc--cccceEEEEeCCCCCHHHHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED--HFDLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~~~ 264 (337)
.-..++|-+.....|...+.+.. -...+.|+|+.|+||||+|+.+.+.--... .+... ....++......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34578999999999999996543 345799999999999999988876421100 01111 001111111122
Q ss_pred HHHHHHhh-------CCC-C-----CCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCC
Q 043252 265 KSILLSIA-------SDQ-N-----VDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQG 326 (337)
Q Consensus 265 ~~il~~~~-------~~~-~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 326 (337)
..+...-. ... . ......+++ ..+.+.+ .+++-++|+|++...+....+.|...+......
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 22222110 000 0 011223332 2344443 356679999999887777778887777654445
Q ss_pred cEEEEEec
Q 043252 327 SKIIVTTR 334 (337)
Q Consensus 327 s~iivTTR 334 (337)
..+|++|.
T Consensus 172 ~~fiLit~ 179 (351)
T PRK09112 172 ALFILISH 179 (351)
T ss_pred ceEEEEEC
Confidence 55555554
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.69 E-value=0.00017 Score=73.87 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=37.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.++.+++..|.... ..-+.++|++|+||||||+.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997543 234569999999999999998864
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.66 E-value=0.00021 Score=62.15 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|+|+.|+|||+|++.+++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 98
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00058 Score=67.90 Aligned_cols=132 Identities=16% Similarity=0.245 Sum_probs=72.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccc---c-cceEEE-EeCCCCCHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDH---F-DLKAWT-CVSDDFDVIRL 263 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv-~v~~~~~~~~~ 263 (337)
..++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+...--.... + .|.... +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 568999999999999997543 2457789999999999999988653111000 0 000000 000000000
Q ss_pred HHHHHHHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 264 TKSILLSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 264 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
.+.........+...+.+.+... ..+++-++|+|++.......+..|...|......+.+|++|
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 00000000011122333333222 13566699999998776677888887776545556655555
No 99
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.65 E-value=0.00034 Score=67.87 Aligned_cols=143 Identities=20% Similarity=0.102 Sum_probs=88.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc------ccccccceEEEEeCCCCCHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ------VEDHFDLKAWTCVSDDFDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~v~~~~~~~~ 262 (337)
..+-+|+.+..+|-.++...=. .....+++.|.|.+|.|||..+..|.+... --..|. ++.|+.-.-..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3467899999999888864332 113345999999999999999999987432 122343 44555555567899
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCC-CCCCCcEEEEEe
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQ-AGAQGSKIIVTT 333 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTT 333 (337)
++..|...+.+........++.+...+..- -..+.++|++|++...-...-+.+...|. ...++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999999876543333344443333300 12457788888873320011122333333 235678887764
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=97.65 E-value=0.00024 Score=61.78 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=26.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV 254 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 254 (337)
...+.|+|..|+|||.|++.+++... ..-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeH
Confidence 35789999999999999999987421 11123556654
No 101
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00057 Score=65.17 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=37.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999996433 2357889999999999999888653
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.001 Score=65.27 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=72.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+...+.|.+++.... -.+.+.++|+.|+||||+|+.+...--....-+ ..+++.-.....|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 578999999999999997543 245778899999999999998865311110000 00111111111111
Q ss_pred HHhhCCC----CCCCCCHH---HHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 269 LSIASDQ----NVDNHDLN---KLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 269 ~~~~~~~----~~~~~~~~---~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
.....+. .......+ .+.+.+... ..+++-++|+|++.......+..|...+........+|++|
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 1000000 00011222 222222211 13556688999998766677888887776544455555544
No 103
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.63 E-value=0.00033 Score=72.00 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=69.5
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+.+.. -..-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 4688999999888888764210 012234578899999999999999998642 11112233444433211 1
Q ss_pred HHHHHhhCCCCC--CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCC
Q 043252 266 SILLSIASDQNV--DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQA 322 (337)
Q Consensus 266 ~il~~~~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 322 (337)
.....+.+..+. .......+...++. ...-+|+||++...+...+..|...|..
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 112222222110 11111223333221 2235999999987777888877776643
No 104
>PRK09087 hypothetical protein; Validated
Probab=97.63 E-value=0.00016 Score=62.51 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.+.|+|+.|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998864
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00089 Score=65.49 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=73.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc---cccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED---HFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~~~~~~~~~~~ 265 (337)
.+++|-+.-+..|..++.... -.+.+.++|+.|+||||+|+.+.+.--... .+.|. ...+- .
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C~~C----~ 80 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------ECSSC----K 80 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cchHH----H
Confidence 568999999999999997543 345788999999999999999876421111 01110 00000 0
Q ss_pred HHHHHhhCC----CCCCCCCHHHHH---HHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 266 SILLSIASD----QNVDNHDLNKLQ---EELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 266 ~il~~~~~~----~~~~~~~~~~~~---~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
.|...-..+ ........+.+. +.+... ..+++-++|+|++.......++.|...+......+.+|++|
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 110000000 000011222222 221111 13556689999998776677888888887655666666655
No 106
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00025 Score=70.57 Aligned_cols=120 Identities=15% Similarity=0.242 Sum_probs=77.1
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc---cceEEEEeCCCCCHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF---DLKAWTCVSDDFDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 262 (337)
..++|.++.++.+.+.+..... ..+..+.+...+|+.|||||.||+.+... -| +..+-+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chHH
Confidence 4689999999999888864321 12345678888999999999999988753 23 222333 3333
Q ss_pred HH-HHHHHHhhCCCCC--CCCCHHHHHHHHHHHcCCCeE-EEEEeCCCCCChhcHHHhhccCCCC
Q 043252 263 LT-KSILLSIASDQNV--DNHDLNKLQEELKKQLFGKKF-LLVLDDVWNENYTDWVHLSLPFQAG 323 (337)
Q Consensus 263 ~~-~~il~~~~~~~~~--~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 323 (337)
.. ..-++.+-+..+. ....-. .|.+..+.+.| +|.||+|...+++..+.|...|.++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG----~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGG----QLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecccc----chhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 22 2223444443331 222223 34555566767 8889999988888888888777654
No 107
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.62 E-value=6.7e-05 Score=68.41 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=42.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
..++|.++.++++++++.......+...+++.++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999976443123456899999999999999999997753
No 108
>PRK12377 putative replication protein; Provisional
Probab=97.62 E-value=0.00022 Score=62.29 Aligned_cols=100 Identities=21% Similarity=0.105 Sum_probs=54.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..+.|+|..|+|||+||..+.+.. ......++++++. +++..+-..... ...... +.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHH----HHHHh-cC
Confidence 578999999999999999999863 2233334565543 444444433321 111222 22222 34
Q ss_pred eEEEEEeCCCCCChhcHH--HhhccCCCC-CCCcEEEEEec
Q 043252 297 KFLLVLDDVWNENYTDWV--HLSLPFQAG-AQGSKIIVTTR 334 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR 334 (337)
-=||||||+.......|. .|...+... .+.--+||||-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 559999999554333443 233333211 12223677764
No 109
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.61 E-value=9.8e-05 Score=61.32 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=49.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
.-+.|+|..|+|||.||..+.+.. +...+ .+.|+.+ .+++.. +.... ...........+ . +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~----l~~~~--~~~~~~~~~~~l---~--~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDE----LKQSR--SDGSYEELLKRL---K--R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHH----HHCCH--CCTTHCHHHHHH---H--T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceecc----ccccc--cccchhhhcCcc---c--c
Confidence 469999999999999999987742 22222 2455543 333333 33221 122222332222 2 2
Q ss_pred eEEEEEeCCCCCChhcHHH--hhccCCC-CCCCcEEEEEec
Q 043252 297 KFLLVLDDVWNENYTDWVH--LSLPFQA-GAQGSKIIVTTR 334 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTTR 334 (337)
-=||||||+.......|.. +...+.. -.++ .+||||.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN 148 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSN 148 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCC
Confidence 3488899997764444432 2222211 1234 4777875
No 110
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.002 Score=54.95 Aligned_cols=122 Identities=22% Similarity=0.259 Sum_probs=72.6
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
+-..++|.+..++.|++--..-- .+..---|.+||..|.||++|++.+.+. +....-. -|.|...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 44568999888888765433211 1222346889999999999999999875 2222211 2333221
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCC---CCCcEEEEEecCC
Q 043252 267 ILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAG---AQGSKIIVTTRNQ 336 (337)
Q Consensus 267 il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTTR~~ 336 (337)
+..++..+.+.|+. ...||.|..||+..+ ....+..+...|..+ .+..-++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 12233333333333 267999999999654 345778888887643 3334455555543
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.00079 Score=60.31 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-+.++|++|.||||+|+.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999777653
No 112
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.001 Score=65.81 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=74.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+.-...|..++.... -...+.++|+.|+||||+|+.+.+.--....+.. ...++..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHh
Confidence 468899999999999987543 2347889999999999999999764211110000 001111111222222
Q ss_pred HHhhCCC----CCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 269 LSIASDQ----NVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
....... .......+.+.+.+... ..+++-++|||++.......++.|...+..-...+.+|++|.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 1111100 00112222222222111 124556899999987666778888887776545555565553
No 113
>PRK06526 transposase; Provisional
Probab=97.56 E-value=0.00019 Score=63.04 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=51.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
.-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... ... +...+... .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~------~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH------AGR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh------cCc---HHHHHHHh--cc
Confidence 3689999999999999999876421 12222 2222 33444444433211 111 12223332 23
Q ss_pred eEEEEEeCCCCCChhcHH--HhhccCCC-CCCCcEEEEEecC
Q 043252 297 KFLLVLDDVWNENYTDWV--HLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTTR~ 335 (337)
.-||||||+.......+. .+...+.. -.++| +|+||..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 458999999654322222 23333221 12355 8888764
No 114
>PRK06921 hypothetical protein; Provisional
Probab=97.56 E-value=0.00045 Score=61.19 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccccc-ccceEEEEe
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDH-FDLKAWTCV 254 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 254 (337)
...+.++|..|+|||+||..+.+. +... -..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457899999999999999999885 2222 233456553
No 115
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00028 Score=72.46 Aligned_cols=45 Identities=29% Similarity=0.444 Sum_probs=37.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999975432 24569999999999999988764
No 116
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.56 E-value=0.00081 Score=59.53 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHH
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 264 (337)
.-++.+..++... .-|.+.|++|+|||+||+.+... ... ....+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 3445566666432 25678999999999999999862 221 23456666655555544
No 117
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00027 Score=69.66 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=40.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|-++.++++..||..... ......++.|+|++|+||||+++.+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999875432 1223458999999999999999999874
No 118
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.55 E-value=0.0003 Score=72.30 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=37.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.+++++++.|.... ..-+.++|++|+|||+||+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997543 235669999999999999988764
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.55 E-value=0.00033 Score=71.05 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=37.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||++++++++..|.... ..-+.++|++|+|||++|+.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999986543 234579999999999999999874
No 120
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.54 E-value=6.1e-05 Score=59.81 Aligned_cols=88 Identities=23% Similarity=0.088 Sum_probs=47.4
Q ss_pred EEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeE
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKF 298 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 298 (337)
|.++|++|+|||+||+.++... .. ...-+.++...+..+++...--. ..........+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~----~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS----NGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET-----TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec----ccccccccccccccc-----ccee
Confidence 6799999999999999998742 11 12336777777776655322211 000000000000001 1788
Q ss_pred EEEEeCCCCCChhcHHHhhccC
Q 043252 299 LLVLDDVWNENYTDWVHLSLPF 320 (337)
Q Consensus 299 LlVlDdv~~~~~~~~~~l~~~l 320 (337)
++|||++.......+..+...+
T Consensus 68 il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHH
Confidence 9999999765555555554443
No 121
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.53 E-value=0.00033 Score=60.51 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=52.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHH----hhCCC-CCCCCCHHH---HH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLS----IASDQ-NVDNHDLNK---LQ 286 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~----~~~~~-~~~~~~~~~---~~ 286 (337)
.-.++.|+|.+|+|||+|+.++.... ...-..++|++.. .++...+. ++... +.... .....+..+ ..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 45799999999999999998887642 1223567899887 56655533 23222 10000 001223322 33
Q ss_pred HHHHHHcCCCeEEEEEeCCC
Q 043252 287 EELKKQLFGKKFLLVLDDVW 306 (337)
Q Consensus 287 ~~l~~~L~~kr~LlVlDdv~ 306 (337)
..+...+..+--+||+|.+-
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 44444444566699999983
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00073 Score=69.42 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+..... ..+.....+.++|+.|+|||+||+.+.+.. -..-...+-+.++.-.+...+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccH-H
Confidence 5688999999999888763221 112334567889999999999999887531 000112233344332211111 1
Q ss_pred HHHHHhhCCC-CCCCCCHHHHHHHHHHHcCCCe-EEEEEeCCCCCChhcHHHhhccCCCC
Q 043252 266 SILLSIASDQ-NVDNHDLNKLQEELKKQLFGKK-FLLVLDDVWNENYTDWVHLSLPFQAG 323 (337)
Q Consensus 266 ~il~~~~~~~-~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~ 323 (337)
.+ ++.+. .........+ .+.++.+. -+|+||++...+++.++.|...|..+
T Consensus 586 ~l---~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 586 KL---IGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred Hh---cCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 11 11111 1011222233 33343344 48999999888888888887777543
No 123
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.49 E-value=0.00072 Score=62.05 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccc-eEEEEeCCC-CCHHHHHHHHHHHhhCCC
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL-KAWTCVSDD-FDVIRLTKSILLSIASDQ 275 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~-~~~~~~~~~il~~~~~~~ 275 (337)
..++++.+..-. .-.-+.|+|..|+|||||++.+.+... .++-+. ++|+.+.+. .++.+++..+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 345777776432 223669999999999999999887421 122234 467777654 467788888877665443
Q ss_pred CCCCCCHH-----HHHHHHHHHc--CCCeEEEEEeCCC
Q 043252 276 NVDNHDLN-----KLQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 276 ~~~~~~~~-----~~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
. +..... .....+.+++ ++++.+||+|++.
T Consensus 194 ~-de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 194 F-DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 2 111111 1122222333 5899999999994
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.49 E-value=0.00044 Score=59.83 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+.|+|..|+|||+||+.+++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999875
No 125
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0013 Score=60.01 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=73.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc-------------------cccceE
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED-------------------HFDLKA 250 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 250 (337)
.++|-+.....+..+...... ....+.++|+.|+||||+|..+.+.---.. ......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777888888888874431 233699999999999999988876421111 011223
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCc
Q 043252 251 WTCVSDDFD---VIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGS 327 (337)
Q Consensus 251 wv~v~~~~~---~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 327 (337)
.+.-+.... ..+..+++.+....... .++.-+++||++.....+.-..+...+..-...+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 333333222 12222222222211110 2567789999997766666677777666656677
Q ss_pred EEEEEecC
Q 043252 328 KIIVTTRN 335 (337)
Q Consensus 328 ~iivTTR~ 335 (337)
.+|++|..
T Consensus 141 ~~il~~n~ 148 (325)
T COG0470 141 RFILITND 148 (325)
T ss_pred EEEEEcCC
Confidence 88887753
No 126
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.48 E-value=0.00077 Score=56.94 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=61.7
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC------CCHHHH---
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD------FDVIRL--- 263 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~------~~~~~~--- 263 (337)
.+..+-...++.|.. ..++.+.|++|.|||.||-...-+.-....|+..+++.-.-+ |-+.++
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 445556666777762 239999999999999999777655434467777766542111 000110
Q ss_pred ----HHHHHHHhhCCCCCCCCCHHHHHHH------HHHHcCCC---eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEE
Q 043252 264 ----TKSILLSIASDQNVDNHDLNKLQEE------LKKQLFGK---KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKII 330 (337)
Q Consensus 264 ----~~~il~~~~~~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 330 (337)
+.-+...+..-. .....+.+... -..+++|+ ..+|++|+..+.....+..+...+ +.|||||
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEE
Confidence 111111111100 11222222211 01234555 459999999887777777765543 5789999
Q ss_pred EE
Q 043252 331 VT 332 (337)
Q Consensus 331 vT 332 (337)
++
T Consensus 151 ~~ 152 (205)
T PF02562_consen 151 IT 152 (205)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 127
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.0009 Score=58.34 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=55.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~ 295 (337)
...+.++|.+|+|||+||..+.+.... .-..+++++ ..+++..+-..... ...+...+ .+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~~----l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFSN----SETSEEQL----LNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHhh----ccccHHHH----HHHhc-
Confidence 347899999999999999999885322 222344443 34444444433321 11222222 23343
Q ss_pred CeEEEEEeCCCCCChhcHHH--hhccCC--CCCCCcEEEEEec
Q 043252 296 KKFLLVLDDVWNENYTDWVH--LSLPFQ--AGAQGSKIIVTTR 334 (337)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~--l~~~l~--~~~~gs~iivTTR 334 (337)
+.=||||||+......+|.. +...+. ..... .+||||-
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~-~tiitSN 203 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKR-PTGMLTN 203 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC-CEEEeCC
Confidence 33489999997765556653 222222 11233 4677764
No 128
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.47 E-value=0.00041 Score=59.13 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHh-h---CCC-CCCCCC---HHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSI-A---SDQ-NVDNHD---LNKLQ 286 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~-~---~~~-~~~~~~---~~~~~ 286 (337)
.-.++.|+|++|+|||+++..+.... ...-..++|++... ++...+.+. .+.. . ..- .....+ .....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 45799999999999999998876542 22345688999876 666655443 2221 0 000 001122 22335
Q ss_pred HHHHHHcCC-CeEEEEEeCCC
Q 043252 287 EELKKQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 287 ~~l~~~L~~-kr~LlVlDdv~ 306 (337)
..+.+.+.. +--+||+|.+-
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 555555543 45599999984
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.00072 Score=64.48 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=57.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~ 295 (337)
...+.|+|..|+|||+|++.+.+.......-..++++ +..+++..+...+.... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 4568999999999999999998742111111122333 34566777776664311 11223444443
Q ss_pred CeEEEEEeCCCCCCh-hcH-HHhhccCCC-CCCCcEEEEEec
Q 043252 296 KKFLLVLDDVWNENY-TDW-VHLSLPFQA-GAQGSKIIVTTR 334 (337)
Q Consensus 296 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTTR 334 (337)
+.-+|||||+..... ..+ +.+...|.. ...|..||+|+.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 344899999965421 122 233333321 134556888865
No 130
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.45 E-value=0.00026 Score=64.47 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..+.++|..|+|||+||..+.+.. ....+ .++++++. +++..+...-. . ...+.... +.. +. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l-~~~g~-~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~~---~~~-l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL-LDRGK-SVIYRTAD------ELIEILREIRF-N---NDKELEEV---YDL-LI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH-HHCCC-eEEEEEHH------HHHHHHHHHHh-c---cchhHHHH---HHH-hc-c
Confidence 569999999999999999998853 22222 34555433 33333322111 1 11111111 222 21 2
Q ss_pred eEEEEEeCCCCCChhcHH--HhhccCCCC-CCCcEEEEEec
Q 043252 297 KFLLVLDDVWNENYTDWV--HLSLPFQAG-AQGSKIIVTTR 334 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR 334 (337)
-=||||||+.......|. .+...+... ..+-.+||||.
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 238999999665333332 233333211 23445888875
No 131
>PRK06620 hypothetical protein; Validated
Probab=97.44 E-value=0.00033 Score=60.02 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999998775
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.00065 Score=70.03 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=36.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.++.+++..|.... ..-+.++|++|+|||++|..+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999996543 234558999999999999988764
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0011 Score=62.36 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCe
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKK 297 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 297 (337)
++.|.|+.++|||||++.+... ..+. .+++...+......-+.+.+. .+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~------------------~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLR------------------AYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHH------------------HHHHhhccCC
Confidence 9999999999999999766553 1111 455543332211111111111 1111111278
Q ss_pred EEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 298 FLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.+|+||.|... ..|......+.+..+. +|++|+-+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgss 130 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSS 130 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCc
Confidence 89999999765 7899888888776665 88888755
No 134
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.43 E-value=0.00037 Score=61.37 Aligned_cols=90 Identities=28% Similarity=0.320 Sum_probs=55.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhccccccc----ccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDH----FDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
.-.+.=|+|++|+|||.|+..++-...+... =..++|++....|+..++. +|++....... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3459999999999999999877644322221 2358999999999988865 46655432110 012233
Q ss_pred HHH---HHHHHHHcC-CCeEEEEEeCC
Q 043252 283 NKL---QEELKKQLF-GKKFLLVLDDV 305 (337)
Q Consensus 283 ~~~---~~~l~~~L~-~kr~LlVlDdv 305 (337)
+++ ...+...+. .+=-|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333 333444443 34449999999
No 135
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0017 Score=59.48 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=71.0
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 190 KVYG-RETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 190 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.++| -+.-++.|...+.... -.....++|+.|+||||+|+.+...---....... +++.-..-..+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 4566 6667777777775433 34678999999999999998885431111100000 000000000000
Q ss_pred HHhhCC----C-CCCCCCHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASD----Q-NVDNHDLNKLQEELKKQ----LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~----~-~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..-..+ . .......+++.+.+... ..+.+=++|+|++...+....+.|...+..-+.++.+|++|.+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 000000 0 00111222222222111 2345557999999777667778888888776677888888765
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.41 E-value=0.00053 Score=64.72 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=54.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccc--cceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
...+.|+|+.|+|||+|++.+++.. .... ..+++++ ..++...+...+... ...... +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~~----~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEFK----EKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHHH----HHH
Confidence 4568999999999999999999853 2222 1344553 334455555555321 223332 333
Q ss_pred CCCeEEEEEeCCCCCChh-cH-HHhhccCCC-CCCCcEEEEEec
Q 043252 294 FGKKFLLVLDDVWNENYT-DW-VHLSLPFQA-GAQGSKIIVTTR 334 (337)
Q Consensus 294 ~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTTR 334 (337)
.+ .-+|+|||+...... .+ ..+...|.. ...|..+|+||.
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 22 238999999653211 11 223222211 123456777775
No 137
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.41 E-value=0.0019 Score=65.94 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=38.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+.-++.|.+++............++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999988775322111223458999999999999999999875
No 138
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0001 Score=74.21 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=36.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++||+.+++++++.|..... .-+.++|++|+|||+||+.++..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999976431 23468999999999999998864
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.00057 Score=65.04 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=46.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
..-+.|+|+.|+|||+|++.+++... +.+.. .++|++. .+++.++...+... .... +.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHHH
Confidence 34599999999999999999998521 22222 3455543 45666666655321 2222 233333
Q ss_pred CCeEEEEEeCCCC
Q 043252 295 GKKFLLVLDDVWN 307 (337)
Q Consensus 295 ~kr~LlVlDdv~~ 307 (337)
.+.-+|+|||+..
T Consensus 193 ~~~dvLlIDDi~~ 205 (440)
T PRK14088 193 KKVDVLLIDDVQF 205 (440)
T ss_pred hcCCEEEEechhh
Confidence 3455899999964
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.38 E-value=0.00069 Score=59.71 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEE-EEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAW-TCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i 267 (337)
.+++|.+..+.-|.+.+.. ........+|++|.|||+-|..+...---.+.|.+++. .++|..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4688999999999998875 24678999999999999999888764333455666543 3334322211 1100
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHc--CCCeE-EEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEe
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQL--FGKKF-LLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTT 333 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 333 (337)
...+...+........ ..+.| .||||+......+.|..++..+.+....++.|+.+
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 1111111111111111 12343 78899999888899999998887756666655544
No 141
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.36 E-value=0.00016 Score=55.78 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 142
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.36 E-value=0.00066 Score=64.32 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||++.++.+...+.... -|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 358899999999999887654 6889999999999999999874
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0056 Score=62.33 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=40.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+.+.+|.++-++.|+++|............++.++|++|+||||+|+.+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887422112224458999999999999999999864
No 144
>PRK07261 topology modulation protein; Provisional
Probab=97.36 E-value=0.00049 Score=56.76 Aligned_cols=54 Identities=26% Similarity=0.245 Sum_probs=32.6
Q ss_pred EEEEEccCCCchHHHHHHHHhccccc-ccccceEEEEeCCCCCHHHHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVE-DHFDLKAWTCVSDDFDVIRLTKSILLSI 271 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~~~~il~~~ 271 (337)
.|.|+|++|+||||||+.+.....+. -+.+...|-......+..++...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 48999999999999999987643221 1345555643333334444444443333
No 145
>PRK04296 thymidine kinase; Provisional
Probab=97.35 E-value=0.00053 Score=57.63 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=59.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC-CCCCHHHHHHHHHHHcCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV-DNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~L~~ 295 (337)
.++.|+|+.|.||||++..+..... .+-..++.+. ..++.......++.+++..... .......+...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999977765421 1222222231 2222222233344444322110 12334455555555 333
Q ss_pred CeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 296 KKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
+.-+||+|.+..-+.++...+...+. ..|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 44489999995543232333333322 3577899998763
No 146
>PRK09183 transposase/IS protein; Provisional
Probab=97.34 E-value=0.00066 Score=59.91 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|+|++|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999999764
No 147
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.34 E-value=0.00059 Score=56.07 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=64.7
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 191 VYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 191 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
++|....+.++++.+..-.. ...-|.|+|..|.||+.+|+.+++... ....| +-|+++. ++.+.+-.++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhh-hhcchhhhhhhc
Confidence 46777777777777654332 124667999999999999999998421 22223 3344443 333333333322
Q ss_pred HhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCC------C-----CCcEEEEEecC
Q 043252 270 SIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAG------A-----QGSKIIVTTRN 335 (337)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTTR~ 335 (337)
.............. ..+... ..=-|+||+|.......-..|...+..+ . ...|||.||..
T Consensus 73 ~~~~~~~~~~~~~~---G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKK---GLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBE---HHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccC---Cceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 21111110001000 112122 2226789999776554444555444321 1 14588888864
No 148
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.0012 Score=53.24 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=28.7
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCC
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFD 259 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 259 (337)
++.|+|++|+||||++..+.... ...-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999997642 22234567777765543
No 149
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.00023 Score=61.98 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=42.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|+|.++-+++|.=++..... .++.+--+.++|++|.||||||.-+.+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 5799999999988777765443 4567889999999999999999999885
No 150
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.29 E-value=0.0017 Score=56.03 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=55.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
.-.++.|+|++|+|||+|+..+........ .=..++|+.....++...+. .+......... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 456999999999999999988865321111 01457899988877765543 33333221100 022445
Q ss_pred HHHHHHHHHHcC----CCeEEEEEeCCCC
Q 043252 283 NKLQEELKKQLF----GKKFLLVLDDVWN 307 (337)
Q Consensus 283 ~~~~~~l~~~L~----~kr~LlVlDdv~~ 307 (337)
+++...+...+. .+--|||+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 555555555542 3445999999853
No 151
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.29 E-value=0.00068 Score=61.39 Aligned_cols=85 Identities=21% Similarity=0.138 Sum_probs=54.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCC----CCCCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQ----NVDNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~----~~~~~~~~~~~~~l~ 290 (337)
.-+++-|+|++|+||||||.+++-.. ...-...+||+..+.++.. .++.++... .....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45799999999999999998876542 2233467899887777653 233332211 012334566666665
Q ss_pred HHcC-CCeEEEEEeCCC
Q 043252 291 KQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 291 ~~L~-~kr~LlVlDdv~ 306 (337)
..++ +.--|||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5554 345599999984
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0013 Score=66.54 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=68.6
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
.++|.++.++.|...+..... ..+.....+.++|+.|+|||+||+.+.... .. ..+.++++.-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhccccc----
Confidence 478999999988888763210 012335678999999999999999997642 22 233444443221111
Q ss_pred HHHHhhCCCCC--CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCC
Q 043252 267 ILLSIASDQNV--DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQ 321 (337)
Q Consensus 267 il~~~~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 321 (337)
...+.+..+. .......+.+.+++ ....+|+||++...+.+.+..|...|.
T Consensus 530 -~~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 -VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -HHHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1222221110 11111222233322 234699999998887777777776654
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.28 E-value=0.00081 Score=64.63 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|.+..+++|.+.+..+-. .+-...+-+.++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4578899999888887642110 01123456899999999999999999985
No 154
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.004 Score=57.62 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988865
No 155
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.26 E-value=0.0007 Score=61.33 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=56.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhccccc----ccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVE----DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
.-+++-|+|++|+|||+|+..++-..... ..=..++||+..+.|+++++.+ +++.++.... ....+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45799999999999999997765332221 1113688999999999888654 5555543211 012233
Q ss_pred HHHH---HHHHHHcC-CCeEEEEEeCCC
Q 043252 283 NKLQ---EELKKQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 283 ~~~~---~~l~~~L~-~kr~LlVlDdv~ 306 (337)
++.. ..+...+. ++-=|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 4333 33333443 334489999984
No 156
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.26 E-value=0.0008 Score=60.88 Aligned_cols=86 Identities=20% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEEL 289 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l 289 (337)
+.-+++-|+|++|+||||||.++.... ...-..++||...+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 345799999999999999998876542 2223457788877766653 2333332110 1234456666666
Q ss_pred HHHcC-CCeEEEEEeCCC
Q 043252 290 KKQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 290 ~~~L~-~kr~LlVlDdv~ 306 (337)
...++ +.--+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 445699999984
No 157
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.26 E-value=0.0011 Score=60.49 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=56.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccc----cceEEEEeCCCCCHHHHHHHHHHHhhCCCCC--------CCCC-
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF----DLKAWTCVSDDFDVIRLTKSILLSIASDQNV--------DNHD- 281 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~--------~~~~- 281 (337)
...++-|+|++|+|||+|+..++-.......+ ...+||+..+.|++..+.+ +++.++..... ...+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 45799999999999999998886542221111 3689999999888877654 33443321100 1111
Q ss_pred --HHHHHHHHHHHcCC-Ce-EEEEEeCCC
Q 043252 282 --LNKLQEELKKQLFG-KK-FLLVLDDVW 306 (337)
Q Consensus 282 --~~~~~~~l~~~L~~-kr-~LlVlDdv~ 306 (337)
...+...+...+.. .+ -|||+|.+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 12334555555543 33 499999984
No 158
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0012 Score=58.00 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=47.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~ 295 (337)
..-+.++|.+|+|||.||..+.+..- +..+. +.+++ ..+++.++...... ......|.+.+ .
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~---------~~~~~~l~~~l-~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDE---------GRLEEKLLREL-K 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhc---------CchHHHHHHHh-h
Confidence 34789999999999999999988633 32232 34443 34455555554432 11222233322 1
Q ss_pred CeEEEEEeCCCCCChhcHH
Q 043252 296 KKFLLVLDDVWNENYTDWV 314 (337)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~ 314 (337)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2239999999765444443
No 159
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.24 E-value=0.00087 Score=55.62 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.|+.|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999764
No 160
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.22 E-value=0.0011 Score=63.57 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=43.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccccccc--ceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD--LKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
...+.|+|+.|+|||+|++.+.+. +...+. .+++++. .++...+...+.. ..... +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~------~~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRN------NTMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHc------CcHHH----HHHHH
Confidence 456899999999999999999985 323321 2345443 3344445544422 12222 33333
Q ss_pred CCCeEEEEEeCCCC
Q 043252 294 FGKKFLLVLDDVWN 307 (337)
Q Consensus 294 ~~kr~LlVlDdv~~ 307 (337)
+ +.-+|+|||+..
T Consensus 210 ~-~~dlLiiDDi~~ 222 (450)
T PRK00149 210 R-SVDVLLIDDIQF 222 (450)
T ss_pred h-cCCEEEEehhhh
Confidence 3 234899999965
No 161
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.21 E-value=0.0018 Score=53.78 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=61.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEE---eCCCCCHHHH------HHHHHHHhhCCC-----CCCCCCH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC---VSDDFDVIRL------TKSILLSIASDQ-----NVDNHDL 282 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~------~~~il~~~~~~~-----~~~~~~~ 282 (337)
.+++|+|+.|.|||||.+.++... ......+++. +. ..+.... ..++++.++... ......-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 499999999999999999998642 2233334332 21 1122221 112344433221 1011222
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCC-CC-CcEEEEEecC
Q 043252 283 NKLQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAG-AQ-GSKIIVTTRN 335 (337)
Q Consensus 283 ~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTTR~ 335 (337)
+...-.+...|-...-+++||+.-.. +......+...+..- .. |..||++|.+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 22333455566667788999998643 333444444444322 22 5678888865
No 162
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.21 E-value=0.00095 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++|.++|+.|+||||.+-++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHH
Confidence 69999999999999998777553
No 163
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.21 E-value=0.00093 Score=61.13 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=56.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhccccc----ccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVE----DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
.-++.-|+|.+|+|||+|+..++-..... ..-...+||+....|++.++.+ +++.++.... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 45789999999999999998776332221 1124679999999999888654 5555543211 022344
Q ss_pred HHHH---HHHHHHcC-CCeEEEEEeCCC
Q 043252 283 NKLQ---EELKKQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 283 ~~~~---~~l~~~L~-~kr~LlVlDdv~ 306 (337)
+++. ..+...+. .+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 4433 33333343 334489999984
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.001 Score=65.00 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=54.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccc--cceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHF--DLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
..+.|+|..|+|||.|++.+++.. ...+ ..+++++ ..+++.++...+... ..+. +++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a--~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~~----f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA--RRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGDS----FRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHHH----HHHHhh
Confidence 358999999999999999999852 2211 1234443 344555555544321 1222 333332
Q ss_pred CCeEEEEEeCCCCCCh-hcHH-HhhccCCC-CCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENY-TDWV-HLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTTR~ 335 (337)
. -=||+|||+..... +.|. .|...|.. ...|..|||||..
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 2 24889999965421 2222 22222211 1234568888864
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.002 Score=61.39 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=54.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
....+.|+|+.|+|||+|++.+.+... .....+++++ ...+...+...+... .. ..++..+.
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~~~ 201 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQFYR 201 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHHcc
Confidence 345789999999999999999998532 1112234443 334445555554321 11 22334333
Q ss_pred CCeEEEEEeCCCCCChhc--HHHhhccCCC-CCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTD--WVHLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iivTTR~ 335 (337)
+.-+|+|||+....... .+.+...+.. ...|..||+||..
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 34488899996532111 1222222210 0134568888743
No 166
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.20 E-value=0.0013 Score=59.80 Aligned_cols=91 Identities=16% Similarity=0.085 Sum_probs=54.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
...++.|+|.+|+|||||+..++....... .-..++|++..+.|+..++ .++.+.+..... ....+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 467999999999999999988865322211 1135689999888888764 334444432211 012233
Q ss_pred HHH---HHHHHHHcCC-CeEEEEEeCCC
Q 043252 283 NKL---QEELKKQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 283 ~~~---~~~l~~~L~~-kr~LlVlDdv~ 306 (337)
+++ ...+...+.. +--|||+|.+-
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 333 3333333433 44599999984
No 167
>PRK09354 recA recombinase A; Provisional
Probab=97.20 E-value=0.0011 Score=60.46 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEEL 289 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l 289 (337)
+.-+++-|+|++|+|||||+.+++... ...-...+||...+.++.. .+++++.+.. ....+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 346799999999999999998876542 2233567899888877753 2333332210 1233456666666
Q ss_pred HHHcC-CCeEEEEEeCCC
Q 043252 290 KKQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 290 ~~~L~-~kr~LlVlDdv~ 306 (337)
...++ +.--|||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 65554 345599999985
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0059 Score=56.84 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=58.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
....+.|+|..|.|||.|++.+.+. ...+......+++ +.+....+++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 4679999999999999999999985 3334432223333 2345555555555321 123344444
Q ss_pred CCeEEEEEeCCCCCC-----hhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNEN-----YTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.-=++++||++.-. ++....+...+.. .|-.||+|++.
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr 217 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDR 217 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCC
Confidence 33388899996521 1222223333333 23378888753
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0059 Score=55.43 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=76.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc-------------cccccceEEEEeC
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-------------EDHFDLKAWTCVS 255 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~v~ 255 (337)
..++|.+..++.+...+.... -.....++|+.|+||+++|..+...--- ...+....|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468899999999999996543 2469999999999999999777543100 1111223344211
Q ss_pred CCCCHHHHHHHHHHHhhCCC-CCCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEE
Q 043252 256 DDFDVIRLTKSILLSIASDQ-NVDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKI 329 (337)
Q Consensus 256 ~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 329 (337)
-..+-..+-...+...+... .......++. +.+.+.+ .+++-++|+|++...+....+.|...|..-+ .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000001111111000 0011222222 2233333 3567799999998777777888888886544 4466
Q ss_pred EEEecC
Q 043252 330 IVTTRN 335 (337)
Q Consensus 330 ivTTR~ 335 (337)
|++|.+
T Consensus 157 ILi~~~ 162 (314)
T PRK07399 157 ILIAPS 162 (314)
T ss_pred EEEECC
Confidence 666643
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00077 Score=55.82 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=26.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEE
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWT 252 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 252 (337)
...+|.+.|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 3469999999999999999999874 33344444444
No 171
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.16 E-value=0.00035 Score=67.22 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=39.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994322112234579999999999999999999874
No 172
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0029 Score=60.77 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=64.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVI 261 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 261 (337)
-..+=|.+..+.+|.+++..-..+ +-...+-|.++|++|+|||.||+.+.+.. .=.| +.++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecc-----
Confidence 346778998888888877652221 22345678999999999999999999853 2223 23322
Q ss_pred HHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCC
Q 043252 262 RLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVW 306 (337)
Q Consensus 262 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 306 (337)
.+|+..+ ...+.+.+.+-+.+.-..-.|+++||++.
T Consensus 257 ---peivSGv------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 ---PEIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhhccc------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 1233333 23344555555666667789999999994
No 173
>CHL00176 ftsH cell division protein; Validated
Probab=97.13 E-value=0.0024 Score=63.34 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=54.5
Q ss_pred cccccchhHHHHH---HHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHH
Q 043252 189 AKVYGRETEKKEI---VELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 262 (337)
.++.|.++.++++ +++|..+.. -+....+-+.++|++|+|||+||+.++... ... ++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccH----HH
Confidence 4578887666554 444433221 012234568999999999999999998742 112 233321 11
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
+. .... ......+...+........++|+|||+..
T Consensus 252 f~----~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 252 FV----EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HH----HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 11 1110 01122333444555567789999999953
No 174
>PRK06696 uridine kinase; Validated
Probab=97.11 E-value=0.0008 Score=58.07 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|..-+++|.+.+.... .....+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35667788888886532 235789999999999999999999864
No 175
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.11 E-value=0.00075 Score=53.53 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=59.7
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc-cccccceEEEEeCCCCCHHHHHHHHHHH
Q 043252 192 YGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-EDHFDLKAWTCVSDDFDVIRLTKSILLS 270 (337)
Q Consensus 192 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~il~~ 270 (337)
||....+.++.+.+..-.. .-..|.|.|..|+||+++|+.++..... ...|... .+.. .. .+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----HHHHH-
Confidence 4666666666666543221 2246799999999999999999875322 2223211 0111 00 11111
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCC-CCCcEEEEEecC
Q 043252 271 IASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~ 335 (337)
. . +.--|+|+|+..-+......+...+... ....|+|.||..
T Consensus 67 --------------------~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 67 --------------------Q-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --------------------H-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --------------------H-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1 1 3445778999777666666666666532 456799998864
No 176
>PRK08233 hypothetical protein; Provisional
Probab=97.11 E-value=0.0024 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999864
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.08 E-value=0.0007 Score=57.19 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc---
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL--- 293 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L--- 293 (337)
++..|.|++|.||||+++.+.......+ ..+.+......-...+. ..... ...+...+.......-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L~----~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKELR----EKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHHH----HHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHHH----HhhCc----chhhHHHHHhcCCcccccc
Confidence 4888999999999999998876422221 23333333322222222 22211 1111111100000000
Q ss_pred ---CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 294 ---FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 294 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
..++-+||+|+....+...+..+....+. .|+|||+.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 12345899999977666667666665543 46777764
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.06 E-value=0.0031 Score=59.09 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.++.|.+..+++|.+.+..+-. .+-...+-+.++|++|+|||+||+.+.+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45688999888888776532100 01134567899999999999999999885
No 179
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.05 E-value=0.0023 Score=54.92 Aligned_cols=88 Identities=20% Similarity=0.091 Sum_probs=50.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHh----hCCCC-CCCCCHHH---HH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSI----ASDQN-VDNHDLNK---LQ 286 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~----~~~~~-~~~~~~~~---~~ 286 (337)
.-.++.|.|.+|+|||||+.++.... ...=..++|++....+. +-+.+++... ..... ....+..+ ..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 45799999999999999998887542 12223467887665554 3333443321 10000 01222222 23
Q ss_pred HHHHHHcCCCeEEEEEeCCC
Q 043252 287 EELKKQLFGKKFLLVLDDVW 306 (337)
Q Consensus 287 ~~l~~~L~~kr~LlVlDdv~ 306 (337)
..+...+..+--+||+|.+-
T Consensus 94 ~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 94 QETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHhcCCcEEEEechH
Confidence 34445554445699999984
No 180
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.0038 Score=51.65 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=57.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcc-cc--cc---ccc--ceEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CCCCCH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDK-QV--ED---HFD--LKAWTCVSDDFDVIRLTKSILLSIASDQN-----VDNHDL 282 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~v~~~~~~~~~~~~il~~~~~~~~-----~~~~~~ 282 (337)
-.+++|+|+.|+|||||.+.+..+. ++ .. .|. ...|+ .+ .+.+..+..... ...-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999886321 11 11 111 12222 22 345555543211 011121
Q ss_pred -HHHHHHHHHHcCCC--eEEEEEeCCCCC-ChhcHHHhhccCCCC-CCCcEEEEEecCC
Q 043252 283 -NKLQEELKKQLFGK--KFLLVLDDVWNE-NYTDWVHLSLPFQAG-AQGSKIIVTTRNQ 336 (337)
Q Consensus 283 -~~~~~~l~~~L~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~ 336 (337)
+...-.+...|-.+ .=+++||+.-.. +......+...+... ..|..||++|.+.
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 22233344455455 668888988553 333334444444321 2466788888753
No 181
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.04 E-value=0.0031 Score=55.67 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=52.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH-----
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN----- 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~----- 283 (337)
.-++|+|..|+|||||++.+++. +..+|. .++++-+.+.. .+.++..++...-...... +.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999986 333443 45566665543 3455555555431111100 111111
Q ss_pred HHHHHHHHHc--C-CCeEEEEEeCCC
Q 043252 284 KLQEELKKQL--F-GKKFLLVLDDVW 306 (337)
Q Consensus 284 ~~~~~l~~~L--~-~kr~LlVlDdv~ 306 (337)
...-.+.+++ + ++..||++||+.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1223345555 3 899999999993
No 182
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.03 E-value=0.0037 Score=55.90 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=45.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhccccc-ccccceEEEEeCCCCC--HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVE-DHFDLKAWTCVSDDFD--VIRLTKSILLSIASDQNVDNHDLNKLQEELKK 291 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~--~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 291 (337)
...++.|+|+.|+||||++..+......+ ..+ .+..|+.. ++. ..+.+......++.... ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHH
Confidence 45799999999999999998887643222 112 23444433 222 12222222232222221 23344555555544
Q ss_pred HcCCCeEEEEEeCC
Q 043252 292 QLFGKKFLLVLDDV 305 (337)
Q Consensus 292 ~L~~kr~LlVlDdv 305 (337)
. .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 3 33 347777753
No 183
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.03 E-value=0.0046 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999864
No 184
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0006 Score=66.54 Aligned_cols=105 Identities=21% Similarity=0.286 Sum_probs=64.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
+.+-+|.++-+++|+++|.-......-+-+++++||++|+|||+|++.+..- ....|- -+++.+-.|..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkfv---R~sLGGvrDEAE----- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFV---RISLGGVRDEAE----- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEE---EEecCccccHHH-----
Confidence 3456799999999999986433222334579999999999999999999874 444452 234444333322
Q ss_pred HHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 268 LLSIASDQN--VDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 268 l~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
+.++.. ..+.. ..+...+++. +.+.=|++||.+..
T Consensus 392 ---IRGHRRTYIGamP-GrIiQ~mkka-~~~NPv~LLDEIDK 428 (782)
T COG0466 392 ---IRGHRRTYIGAMP-GKIIQGMKKA-GVKNPVFLLDEIDK 428 (782)
T ss_pred ---hccccccccccCC-hHHHHHHHHh-CCcCCeEEeechhh
Confidence 222211 12222 2233333333 45677899999954
No 185
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.01 E-value=0.0026 Score=51.99 Aligned_cols=111 Identities=18% Similarity=0.106 Sum_probs=57.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC--CCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD--DFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
.+++|+|+.|.|||||.+.++... ......+++.-.. ..+..+... ..+..- . +...-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-Y-QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-E-ecCHHHHHHHHHHHHHh
Confidence 489999999999999999998632 2233344432111 111111111 011100 0 12222223334555555
Q ss_pred CCeEEEEEeCCCCC-ChhcHHHhhccCCCC-CCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNE-NYTDWVHLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~ 335 (337)
.+.-+++||+.-.. +......+...+..- ..|..||++|.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 66778889998653 333344444444321 235668888765
No 186
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.004 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 49999999999999999999763
No 187
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0016 Score=62.32 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=77.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
++++|.+.-...|...|.... -..--...|+.|+||||+|+.+...--... | ....+++.-..-+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 457999999999999997654 244667789999999999998865321111 0 0111111111112222
Q ss_pred HH-------hhCCCCCCCCCHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LS-------IASDQNVDNHDLNKLQEELKKQL-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~-------~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.. +........++...+.+.+.-.- .++-=+.++|+|.-.....|+.|...|..-...-..|+.|.+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 11 00001112223333333333332 244448999999887778999999888765555555555543
No 188
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.00 E-value=0.003 Score=57.38 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=55.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~ 282 (337)
...++-|+|++|+|||+|+..++-...... .=..++||+....|+..++. ++++.++.... ....+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 457999999999999999988865422211 01268999999988887754 34444332110 011111
Q ss_pred ---HHHHHHHHHHcCCC---eEEEEEeCCCC
Q 043252 283 ---NKLQEELKKQLFGK---KFLLVLDDVWN 307 (337)
Q Consensus 283 ---~~~~~~l~~~L~~k---r~LlVlDdv~~ 307 (337)
..+.+.+.+.+... --|||+|.+-.
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 12334455555332 34999999853
No 189
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.00 E-value=0.0063 Score=49.88 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=56.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccc-ccc--ccc---eEEEEeCCCCCH--HHHHHHHHHHhhCCCCCCCCCHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQV-EDH--FDL---KAWTCVSDDFDV--IRLTKSILLSIASDQNVDNHDLNKLQEE 288 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~~---~~wv~v~~~~~~--~~~~~~il~~~~~~~~~~~~~~~~~~~~ 288 (337)
.+++|+|+.|.|||||++.+...... ... |+. ..+ +.+.... ..+...+. .........-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~----~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLI----YPWDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhh----ccCCCCCCHHHHHHHH
Confidence 48999999999999999999864211 111 111 112 2232211 12222221 1011122223333344
Q ss_pred HHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 289 LKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 289 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+.+.|-.+.=+++||+.-.. +......+...+... +..||++|.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 55555566678899988553 233333344444322 3568888765
No 190
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.99 E-value=0.02 Score=45.74 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHccc-cCChHHHHHHHHHHHHHHhhhhhh
Q 043252 5 GEAILTASVELLVNKLASEGIRLFARQGRIKDDLVKWKKKLVTIKAVLDDAEEKK-TTDDSVKLWLGELQNLAYDVEDLL 83 (337)
Q Consensus 5 ~~~~~~~~~~~l~~kl~s~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~~-~~~~~~~~Wl~~lr~~ayd~eD~l 83 (337)
|+.+.+|+++.+++.|...+..........+.-+++|...++.|..++++.+.-. ..+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444454455555566678889999999999999999988754 334444677888899999999999
Q ss_pred HHHH
Q 043252 84 DEFQ 87 (337)
Q Consensus 84 D~~~ 87 (337)
..|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 9873
No 191
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0024 Score=54.08 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 192
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0048 Score=54.63 Aligned_cols=91 Identities=22% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHH-hhC---CCCCCCCCHHHHHHHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLS-IAS---DQNVDNHDLNKLQEEL 289 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~-~~~---~~~~~~~~~~~~~~~l 289 (337)
+.-+++=|+|+.|.||||||-+++-. .+..-...+|++.-+.+++..+. ++... +.. ..+........+.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45679999999999999999887654 33334478999999999988744 34333 221 1121222233344555
Q ss_pred HHHcCCCeEEEEEeCCCC
Q 043252 290 KKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 290 ~~~L~~kr~LlVlDdv~~ 307 (337)
.+....+--|||+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 555444456999999844
No 193
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.0013 Score=55.61 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=53.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
.+|.|+|+.|+||||++..+... ........++. +.++.. ...... ..+..... ...+.....+.++..|...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E--~~~~~~-~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIE--FVHESK-RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcc--ccccCc-cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 37899999999999999987653 22222333332 222111 000000 00000000 1112233455677777656
Q ss_pred eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.=+|++|++.+. +.+..+... ...|-.++.|+..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha 108 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHT 108 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecC
Confidence 669999999653 333332222 1235456666643
No 194
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.92 E-value=0.0011 Score=62.75 Aligned_cols=51 Identities=29% Similarity=0.221 Sum_probs=37.2
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|.+..+++|.+.+.-+-. -+-.....+.++|++|+|||+||+.+++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999888877642110 01123456889999999999999999985
No 195
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.0059 Score=53.03 Aligned_cols=87 Identities=20% Similarity=0.138 Sum_probs=53.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC------------------
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN------------------ 276 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~------------------ 276 (337)
.-+++.|+|.+|+|||+|+.++.... .+ .=..++|++..++ ...++..+- +++-...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEecccccc
Confidence 45799999999999999998885431 12 1235778887654 345544432 2211000
Q ss_pred -CCCCCHHHHHHHHHHHcCC-CeEEEEEeCCC
Q 043252 277 -VDNHDLNKLQEELKKQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 277 -~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 306 (337)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0123345666777777653 44589999985
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0089 Score=54.63 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=31.6
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
+++-++|||++...+....+.|...+..-..++.+|+||.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 344456789998887788888888887656677888888653
No 197
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.012 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999877754
No 198
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0021 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 199
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0031 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.++.-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999864
No 200
>PTZ00035 Rad51 protein; Provisional
Probab=96.89 E-value=0.0046 Score=56.72 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhccccc----ccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCC
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVE----DHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHD 281 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~ 281 (337)
+.-.++.|+|.+|+|||||+..++-..... ..=..++|++....|+..++ .++.+.+..... ....+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 346799999999999999998886432211 01134679998888887774 344444432210 01233
Q ss_pred HHHHHHHH---HHHcC-CCeEEEEEeCCCC
Q 043252 282 LNKLQEEL---KKQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 282 ~~~~~~~l---~~~L~-~kr~LlVlDdv~~ 307 (337)
.+++...+ ...+. ++--|||+|.+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33433333 33333 3445999999953
No 201
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.89 E-value=0.0042 Score=60.89 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ 292 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 292 (337)
.+.-+++.++|++|+||||||.-+.+.. -|. ++=|+.|+.-+...+-..|...+.-+...++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 3456899999999999999999987642 232 4557788877777776666665543322111
Q ss_pred cCCCeEEEEEeCCCCCChhcHHHhhc
Q 043252 293 LFGKKFLLVLDDVWNENYTDWVHLSL 318 (337)
Q Consensus 293 L~~kr~LlVlDdv~~~~~~~~~~l~~ 318 (337)
.++...||+|.+.-......+.+..
T Consensus 385 -dsrP~CLViDEIDGa~~~~Vdvils 409 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAPRAAVDVILS 409 (877)
T ss_pred -CCCcceEEEecccCCcHHHHHHHHH
Confidence 1466778999997654333333433
No 202
>PHA02244 ATPase-like protein
Probab=96.88 E-value=0.012 Score=54.11 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|+.|+|||+||+.+...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999874
No 203
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.88 E-value=0.006 Score=59.20 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=34.7
Q ss_pred ccccccchhHHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELL---LKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|.+..++++.+++ ..+.. .+....+-+.++|++|+|||+||+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 356889877766555443 22110 01223456889999999999999999875
No 204
>PRK13695 putative NTPase; Provisional
Probab=96.87 E-value=0.00056 Score=56.56 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|.|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 205
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.85 E-value=0.0075 Score=55.28 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=56.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC--------CCCCH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV--------DNHDL 282 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~--------~~~~~ 282 (337)
...++-|+|.+|+|||+|+..++-...... .-..++||+....|+++++. +|++.+...... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 467899999999999999987764322211 11268999999999988754 555555432210 12334
Q ss_pred HHHHHHH---HHHcC-CCeEEEEEeCCC
Q 043252 283 NKLQEEL---KKQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 283 ~~~~~~l---~~~L~-~kr~LlVlDdv~ 306 (337)
+++...+ ...+. .+--|||+|.+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 4433333 23333 345599999984
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.016 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.++|.+|+||||++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999888764
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.82 E-value=0.0063 Score=51.77 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++||-++-++.|.-.-.+ ++.+-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 5789999988888766643 3567889999999999998877765
No 208
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.81 E-value=0.0098 Score=56.18 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...++.++|.+|+||||++..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999866654
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.006 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.++.++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999999888764
No 210
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.79 E-value=0.007 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.79 E-value=0.013 Score=53.23 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=68.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc-cccccccceEE----EEeCCCC-----CH-H
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-QVEDHFDLKAW----TCVSDDF-----DV-I 261 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~v~~~~-----~~-~ 261 (337)
+|..+..--.++|+.++ +..|++.|.+|.|||-||-...-.. ..++.|..++- +.+.+.. .. +
T Consensus 228 prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 35666666677787554 7799999999999999995543211 12333432221 2222211 00 0
Q ss_pred H------HHHHHHHHhhCCCCCCCCCHHHHHHHH---------HHHcCCC---eEEEEEeCCCCCChhcHHHhhccCCCC
Q 043252 262 R------LTKSILLSIASDQNVDNHDLNKLQEEL---------KKQLFGK---KFLLVLDDVWNENYTDWVHLSLPFQAG 323 (337)
Q Consensus 262 ~------~~~~il~~~~~~~~~~~~~~~~~~~~l---------~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~ 323 (337)
+ -..+-++.+..... .....+...+ ..+.+|+ .-+|++|...+..+.....+ +...
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~ 375 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRA 375 (436)
T ss_pred hccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhc
Confidence 0 11122233332221 1122222221 1233455 44899999988755555444 4455
Q ss_pred CCCcEEEEEe
Q 043252 324 AQGSKIIVTT 333 (337)
Q Consensus 324 ~~gs~iivTT 333 (337)
+.||||++|-
T Consensus 376 G~GsKIVl~g 385 (436)
T COG1875 376 GEGSKIVLTG 385 (436)
T ss_pred cCCCEEEEcC
Confidence 7899999873
No 212
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0082 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988865
No 213
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.77 E-value=0.0042 Score=51.25 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999863
No 214
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.0013 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36899999999999999998864
No 215
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0062 Score=57.71 Aligned_cols=52 Identities=31% Similarity=0.336 Sum_probs=38.9
Q ss_pred cccccch---hHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 189 AKVYGRE---TEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 189 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
.++-|-+ .|+++|+++|.++.. -++.-.+-|.++|++|.|||-||+.|.-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3455664 567888999987642 123446789999999999999999998753
No 216
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.75 E-value=0.0012 Score=51.19 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 217
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.74 E-value=0.0083 Score=53.78 Aligned_cols=114 Identities=23% Similarity=0.293 Sum_probs=65.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc-ccccccccceEEEEeCCCCCH-HHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND-KQVEDHFDLKAWTCVSDDFDV-IRLTKS 266 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~v~~~~~~-~~~~~~ 266 (337)
..++|-.++..++-.||.+.-. -+...-+.|+|+.|.|||+|......+ .+..++| +-|...+.... .-.+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 4578998898888888865321 112236789999999999999888776 1233333 33455544333 224555
Q ss_pred HHHHhhCCCCC---CCCCHHHHHHHHHHHcC------CCeEEEEEeCCCC
Q 043252 267 ILLSIASDQNV---DNHDLNKLQEELKKQLF------GKKFLLVLDDVWN 307 (337)
Q Consensus 267 il~~~~~~~~~---~~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~ 307 (337)
|..++...... ...+..+....+...|+ +-+.++|+|.++-
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDl 148 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDL 148 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhc
Confidence 55554332111 22333333444444442 2367888887754
No 218
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.73 E-value=0.0015 Score=55.65 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|+|.|.+|+|||||++.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999874
No 219
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.72 E-value=0.012 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999987643
No 220
>PRK10867 signal recognition particle protein; Provisional
Probab=96.71 E-value=0.013 Score=55.43 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....+|.++|++|+||||++..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999997765543
No 221
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.71 E-value=0.0013 Score=55.34 Aligned_cols=81 Identities=23% Similarity=0.205 Sum_probs=42.7
Q ss_pred EEEEEccCCCchHHHHHHHHhccccccccc---ceEEEEeCCCCCHHHHHHHHHHHhhCC---CCCCCCCHHHHHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFD---LKAWTCVSDDFDVIRLTKSILLSIASD---QNVDNHDLNKLQEELKK 291 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~v~~~~~~~~~~~~il~~~~~~---~~~~~~~~~~~~~~l~~ 291 (337)
||+|.|++|+||||||+.+...... ..+. ....++... +....-....-...... ..+...+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDD-FYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGG-GBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecc-cccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999764211 1111 122222222 22211111111111111 11245677888888877
Q ss_pred HcCCCeEEE
Q 043252 292 QLFGKKFLL 300 (337)
Q Consensus 292 ~L~~kr~Ll 300 (337)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 766665433
No 222
>PTZ00301 uridine kinase; Provisional
Probab=96.71 E-value=0.0035 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999988764
No 223
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.70 E-value=0.0056 Score=55.34 Aligned_cols=86 Identities=20% Similarity=0.129 Sum_probs=52.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~ 290 (337)
.-+++-|+|+.|+||||||..+... .+..-..++||...+.++... ++.++.+... .+...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 3569999999999999999888764 333344689999988877643 3333332111 2334555555555
Q ss_pred HHcC-CCeEEEEEeCCCC
Q 043252 291 KQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 291 ~~L~-~kr~LlVlDdv~~ 307 (337)
..++ +..-+||+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 5554 4455999999843
No 224
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.0013 Score=58.45 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 199 KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 199 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+++.+.... +-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhcc
Confidence 45666666443 46799999999999999988754
No 225
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.67 E-value=0.013 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....+++|.|+.|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988764
No 226
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.67 E-value=0.016 Score=52.93 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
.-.+.|.+.|.... .....+|+|.|.=|+||||+.+.+.+..
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777776543 2457899999999999999999998753
No 227
>PRK07667 uridine kinase; Provisional
Probab=96.66 E-value=0.0032 Score=53.02 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665443 23489999999999999999998764
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.0029 Score=64.44 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|.+..++.|.+++..+-. -+-...+.+.++|++|+|||+||+.+++.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 4588999999988877642210 01123457889999999999999999874
No 229
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0082 Score=52.38 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=52.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-----CCCHHHHHHHHHHHhhCCC------CCCCCCHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-----DFDVIRLTKSILLSIASDQ------NVDNHDLNK 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~il~~~~~~~------~~~~~~~~~ 284 (337)
..+++|||..|+|||||++.+..- ...-...++..-.+ .....+-..++++.++... +.+...-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 359999999999999999999863 22222333333111 1123344556666655332 112222222
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCC
Q 043252 285 LQEELKKQLFGKKFLLVLDDVWNE 308 (337)
Q Consensus 285 ~~~~l~~~L~~kr~LlVlDdv~~~ 308 (337)
-.-.+.+.|.-+.=|||.|..-+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhh
Confidence 223466777778889999988553
No 230
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.019 Score=58.33 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=71.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCC-C-CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDSRN-D-GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~-~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
.++|.++.+..|.+.+....... + .....+.+.|+.|+|||-||+.+... +-+..+..+-++++. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh--
Confidence 46788888888887776544211 1 25677888999999999999998763 323333344444443 222
Q ss_pred HHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeE-EEEEeCCCCCChhcHHHhhccCC
Q 043252 268 LLSIASDQN--VDNHDLNKLQEELKKQLFGKKF-LLVLDDVWNENYTDWVHLSLPFQ 321 (337)
Q Consensus 268 l~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~ 321 (337)
...+.+..+ ......+ .|.+.++.+.| +|.||||...+......+...+.
T Consensus 633 vskligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 233322211 1222233 56666666666 77789998877777665555554
No 231
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.64 E-value=0.0019 Score=55.01 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|+|+|++|+|||||++.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 232
>PRK05439 pantothenate kinase; Provisional
Probab=96.62 E-value=0.018 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999988865
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.015 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|+|++|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988764
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0049 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4999999999999999999975
No 235
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.61 E-value=0.003 Score=57.36 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=44.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|.++.+++|++.|.+.....+..-+++.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998765545667789999999999999999988764
No 236
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0062 Score=50.22 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=56.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhh--CCCCC--CC--------CCHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIA--SDQNV--DN--------HDLNK 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~--~~~~~--~~--------~~~~~ 284 (337)
.+++|+|+.|.|||||.+.+.... ......+++.-....+.. ..+-..+. .+... .. -+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999998642 122233333211000000 00001110 00000 00 11122
Q ss_pred -HHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCC-CCCcEEEEEecC
Q 043252 285 -LQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 285 -~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~ 335 (337)
..-.+...|..+.=++++|+.-.. +......+...+..- ..|..||++|.+
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 223455666677789999998653 333333444444321 236678888865
No 237
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.60 E-value=0.0019 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 238
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.60 E-value=0.012 Score=55.66 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCCCCCHH-----HHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQ-----NVDNHDLN-----KLQ 286 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~-----~~~~~~~~-----~~~ 286 (337)
..++|+|..|+|||||++.+.... .....+++..--..-++.++....+....... ..+..... ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 489999999999999999887632 12223444433233445555444444331110 00111111 122
Q ss_pred HHHHHHc--CCCeEEEEEeCCC
Q 043252 287 EELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 287 ~~l~~~L--~~kr~LlVlDdv~ 306 (337)
-.+.+++ +++..||++||+.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchH
Confidence 2233443 5899999999993
No 239
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.60 E-value=0.012 Score=59.42 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=72.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|....+..+.+.+..-.. .-.-|.|.|..|+|||++|+.++...... -...+.+++.... ...+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~--~~~~~~~- 446 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP--AGLLESD- 446 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC--hhHhhhh-
Confidence 4689998888887766653221 23478999999999999999998743211 1133445544322 1222211
Q ss_pred HHhhCCCCCCCCC-HHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEEecC
Q 043252 269 LSIASDQNVDNHD-LNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 335 (337)
+.+........ .......+. ....=.|+||+|..........|...+..+. ...|||.||..
T Consensus 447 --lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 447 --LFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred --hcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111100000 001111121 1123468999998876666666666554321 23588888853
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.59 E-value=0.004 Score=50.37 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=58.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe---CCCCCHHHHHHHHHHHhh-----CCCCCCCCCH------
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV---SDDFDVIRLTKSILLSIA-----SDQNVDNHDL------ 282 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~~~~~~~~~~il~~~~-----~~~~~~~~~~------ 282 (337)
..|-|++..|.||||+|-...-.. ....+. +.++.. ........++..+ ..+. ....-...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 377888888999999996664321 111222 222222 1122333333332 0110 0000000111
Q ss_pred -HHHHHHHHHHcCCCeE-EEEEeCCCCC---ChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 283 -NKLQEELKKQLFGKKF-LLVLDDVWNE---NYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 283 -~~~~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
....+..++.+....| |||||++-.. ..-..+.+...+.....+.-||+|.|+-
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1123334445555455 9999999432 2234455666665556677899999973
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.024 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.++|+.|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999888653
No 242
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.56 E-value=0.0069 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|..|.|||||.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 243
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.55 E-value=0.0063 Score=55.79 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=66.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
.++|.+.....+...+.... -+.+.|++|+|||+||+.+... .. -..++|.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 37888888888777776543 6789999999999999999874 22 23466777777777665544333
Q ss_pred HhhC---CCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccC
Q 043252 270 SIAS---DQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPF 320 (337)
Q Consensus 270 ~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l 320 (337)
.... ... ...+. .+ +..-+.++.+|.++...+..-..+...+
T Consensus 92 ~~~~~~~~~~-~~~~g-----pl---~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 92 AALLLEPGEF-RFVPG-----PL---FAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hhhhccCCeE-EEecC-----Cc---ccccceEEEEeccccCCHHHHHHHHHHH
Confidence 3221 000 00000 00 0011158999999887655555554444
No 244
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.55 E-value=0.011 Score=54.06 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=32.9
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 191 VYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 191 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777677776666654321 2246799999999999999999864
No 245
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.011 Score=51.35 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=63.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcc-----ccc------ccc---cceEEEEeCC------CCCHH---------------
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDK-----QVE------DHF---DLKAWTCVSD------DFDVI--------------- 261 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~-----~~~------~~F---~~~~wv~v~~------~~~~~--------------- 261 (337)
.+++|+|+.|.|||||.+.+..-. ++. ..+ ..+.||.=.. +.++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 599999999999999999997621 110 001 1344543111 11222
Q ss_pred -------HHHHHHHHHhhCCC----CCCCCCHHHH-HHHHHHHcCCCeEEEEEeCCCCC-C---hhcHHHhhccCCCCCC
Q 043252 262 -------RLTKSILLSIASDQ----NVDNHDLNKL-QEELKKQLFGKKFLLVLDDVWNE-N---YTDWVHLSLPFQAGAQ 325 (337)
Q Consensus 262 -------~~~~~il~~~~~~~----~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~-~---~~~~~~l~~~l~~~~~ 325 (337)
+...+.++.++... ....-+-.+. .-.|.+.|..+.=|++||.--.. + ....-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 22333344333211 1122222333 34567778888889999987542 1 22333344444432
Q ss_pred CcEEEEEecC
Q 043252 326 GSKIIVTTRN 335 (337)
Q Consensus 326 gs~iivTTR~ 335 (337)
|..||++|.+
T Consensus 189 g~tIl~vtHD 198 (254)
T COG1121 189 GKTVLMVTHD 198 (254)
T ss_pred CCEEEEEeCC
Confidence 7889998875
No 246
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.50 E-value=0.021 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.|+.|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 247
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.49 E-value=0.012 Score=53.88 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=70.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|....+..+.+.+..-.. .-.-|.|+|..|+||+++|+.++.... -... .+.|++... +...+-..+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~p---fv~v~c~~~-~~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRWQGP---FISLNCAAL-NENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCccCCC---eEEEeCCCC-CHHHHHHHH
Confidence 3588998888888877764332 224688999999999999999986321 1222 334555542 222222222
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEEec
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVTTR 334 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR 334 (337)
...-..... ... ......+. ....=.|+||+|..........|...+..+. ...|||.||.
T Consensus 78 fg~~~~~~~-g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 78 FGHEAGAFT-GAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred ccccccccC-Ccc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCc
Confidence 211100000 000 00001111 1122357899998776666666666554321 1258888875
No 248
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0066 Score=49.17 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC--CHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF--DVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLF 294 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (337)
.+++|+|..|.|||||.+.+.... ......+++.-.... ..... ...+.-.. +...-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe--eCCHHHHHHHHHHHHHh
Confidence 599999999999999999998742 223344444321111 11111 11111000 11122222333555555
Q ss_pred CCeEEEEEeCCCCC-ChhcHHHhhccCCCC-CCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNE-NYTDWVHLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~ 335 (337)
...=+++||+.-.. +......+...+... ..+..+|++|.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56778999998643 233333444333321 124568888764
No 249
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.48 E-value=0.0097 Score=59.93 Aligned_cols=85 Identities=20% Similarity=0.116 Sum_probs=56.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~ 290 (337)
.-+++-|+|++|+|||||+..++.... ..=..++|+...+.++.. .+++++.+.. ......+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 467999999999999999977654321 222457899888877743 4555544321 13344556666666
Q ss_pred HHcCC-CeEEEEEeCCC
Q 043252 291 KQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 291 ~~L~~-kr~LlVlDdv~ 306 (337)
..+.. +--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 66644 45589999985
No 250
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.049 Score=49.62 Aligned_cols=125 Identities=8% Similarity=0.066 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc------cce--EEEEeCCCCCHHHHHHHHH
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF------DLK--AWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~--~wv~v~~~~~~~~~~~~il 268 (337)
..+.|...+.... -...+.+.|+.|+||+++|+.+...---.... .|. -++.....+|...
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~------ 78 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI------ 78 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE------
Confidence 3455666665433 24688899999999999998886431111100 000 0000111111100
Q ss_pred HHhhCCCCCCCCCHHHHH---HHHHHHc-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQ---EELKKQL-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~---~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+... .......++.. +.+...- .+++=++|+|++...+....+.|...|..-..++.+|++|.+
T Consensus 79 --i~p~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 79 --LEPI-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred --Eccc-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 0000 00112233322 2222111 356668889999888778888898888876777788887765
No 251
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.46 E-value=0.016 Score=51.40 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE---eCCCCCHHHHHHHHHHHhhC
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC---VSDDFDVIRLTKSILLSIAS 273 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~~~il~~~~~ 273 (337)
..+.+...|... ....-+.|+|+.|.|||||.+.+.... ......+++. +.......++... ...+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~-~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGC-VNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHH-hccccc
Confidence 445555566532 235689999999999999999998642 1222233332 1110011222211 111110
Q ss_pred CC----CCCCCCHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 274 DQ----NVDNHDLNKLQEELKKQL-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 274 ~~----~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.. ......... ...+...+ ....-+|++|.+... +.+..+...+. .|..||+||..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~ 228 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHG 228 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEech
Confidence 00 000011111 11122222 246779999998543 45555554442 46779999874
No 252
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.45 E-value=0.0077 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.....+.|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999986
No 253
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.45 E-value=0.0025 Score=43.95 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0074 Score=59.06 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=44.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHH----HHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEE----LKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~----l~~ 291 (337)
..-|.|.|+.|+|||+||+.+++... +++.-....|+++.-. ....+..+.. +..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~--------------------~~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD--------------------GSSLEKIQKFLNNVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc--------------------chhHHHHHHHHHHHHHH
Confidence 35789999999999999999998644 3333334455555421 1112332222 333
Q ss_pred HcCCCeEEEEEeCCC
Q 043252 292 QLFGKKFLLVLDDVW 306 (337)
Q Consensus 292 ~L~~kr~LlVlDdv~ 306 (337)
.+....-+|||||+.
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 445667799999994
No 255
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.051 Score=49.38 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+++=++|||++...+...-+.|...|..-..++.+|++|.+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 55668999999877667777788777765667778887764
No 256
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.053 Score=49.25 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+.+=++|+|++...+....+.|...|..-..++.+|++|.+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 44558899999887778888998888776677877777765
No 257
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.047 Score=48.42 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
-.++.|.|.+|+||||++..+.... ...+=..++|+++..+ ..++...++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC--HHHHHHHHHH
Confidence 3488899999999999998876542 1221234678876553 3444444433
No 258
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.43 E-value=0.02 Score=49.79 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=53.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC--------------------
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD-------------------- 274 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~-------------------- 274 (337)
.-+++.|.|++|+|||+||..+.... . ..-+..+|++... +..++...+.. ++-+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~~~-~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNMAQ-FGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHHHH-hCCCHHHHhhcCCEEEEecccccc
Confidence 46799999999999999997654321 1 1234577887665 44555554332 1110
Q ss_pred -----CC----CCCCCHHHHHHHHHHHcCC-CeEEEEEeCCCC
Q 043252 275 -----QN----VDNHDLNKLQEELKKQLFG-KKFLLVLDDVWN 307 (337)
Q Consensus 275 -----~~----~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 307 (337)
.. ....+.+.+...+.+.+.. +.-+||+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00 0124566677777776643 333799999843
No 259
>PRK06762 hypothetical protein; Provisional
Probab=96.43 E-value=0.0028 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 260
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.41 E-value=0.0052 Score=59.57 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=63.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhccc-ccccc-----cceEEEEeCC-CC----CH------------HHHHHHHHHHhhC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHF-----DLKAWTCVSD-DF----DV------------IRLTKSILLSIAS 273 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~v~~-~~----~~------------~~~~~~il~~~~~ 273 (337)
..|+|+|+.|+|||||.+.+..... ..+.. -.+.|+.-.. .. ++ ..-.+..+..+.-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 4799999999999999999954311 01111 1122222111 00 11 2233333333332
Q ss_pred CCCC------CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 274 DQNV------DNHDLNKLQEELKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 274 ~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.... ..+.-+...-.|...+-.+.-|||||.-.+. +.+..+.|..+|.. -+|+ ||++|.++
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr 496 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDR 496 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCH
Confidence 2111 1122233334455566677889999999765 45566666666654 3465 77777654
No 261
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.017 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||.+.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999985
No 262
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.38 E-value=0.031 Score=45.96 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888653
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.38 E-value=0.045 Score=46.45 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|.|..|.|||||.+.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999964
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0039 Score=49.97 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 457899999999999999999864
No 265
>PRK14974 cell division protein FtsY; Provisional
Probab=96.36 E-value=0.031 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+..+|.++|+.|+||||++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999988777653
No 266
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.35 E-value=0.032 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||++.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999975
No 267
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.35 E-value=0.007 Score=50.53 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 268
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.35 E-value=0.02 Score=55.74 Aligned_cols=134 Identities=12% Similarity=0.123 Sum_probs=74.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
...++|....+.++.+.+..-.. .-.-|.|+|..|+|||++|+.++.... ... ..+.|++....+ ..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~---p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRADK---PLVYLNCAALPE-SLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcCCC---CeEEEEcccCCh-HHHHHH
Confidence 35689999998888887765332 234788999999999999999987422 222 334555554322 111111
Q ss_pred HHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEEecC
Q 043252 267 ILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVTTRN 335 (337)
Q Consensus 267 il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 335 (337)
+.....+... .... .....+. ....=.|+||+|..........|...+..+. ...|||.||..
T Consensus 258 lfG~~~g~~~-ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 258 LFGHVKGAFT-GAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hcCccccccC-CCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111111000 0000 0000011 1122247899998876666667766664321 13488888853
No 269
>PRK06547 hypothetical protein; Provisional
Probab=96.34 E-value=0.0039 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|.|++|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999764
No 270
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.33 E-value=0.0054 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 271
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.33 E-value=0.0034 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+.++|.|+|++|+||||+++.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998753
No 272
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.32 E-value=0.011 Score=54.67 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=58.2
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccc----cccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQV----EDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEEL 289 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 289 (337)
...+-+.|||..|.|||.|+-.+|+...+ +-||. .+..++-+.+..... ....+.. +
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~----v 120 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQ----V 120 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHH----H
Confidence 35678999999999999999999986433 22442 333444333332221 2233333 3
Q ss_pred HHHcCCCeEEEEEeCCCCCChhcHHHhhccCCC-CCCCcEEEEEecCC
Q 043252 290 KKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQA-GAQGSKIIVTTRNQ 336 (337)
Q Consensus 290 ~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTR~~ 336 (337)
.+.+.++..||.||++.-.+..+=-.+...|.. ...|. |||+|-|.
T Consensus 121 a~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 344455667999999865544332222222221 13565 66666553
No 273
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.32 E-value=0.017 Score=56.64 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=72.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
....++|....+.++.+.+..-.. .-..|.|+|..|+|||++|+.++.... ....| +.|++..... ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~~--~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALSE--TLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCCH--HHHH
Confidence 346789999999888887764321 233678999999999999999987422 22223 4455544221 2222
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC----C-------CcEEEEEec
Q 043252 266 SILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA----Q-------GSKIIVTTR 334 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~-------gs~iivTTR 334 (337)
.. +.+........... ...........=.|+||+|..........|...+..+. . ..|||.||.
T Consensus 265 ~~---lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 SE---LFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HH---HcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 21 11111100000000 00000001223468899998876666667766664321 1 247888774
No 274
>PRK03839 putative kinase; Provisional
Probab=96.29 E-value=0.0034 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 275
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.28 E-value=0.0067 Score=49.99 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD 256 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 256 (337)
..++.+.|+.|+|||.||+.+.....+ +.....+-++++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhc
Confidence 568999999999999999998764211 2333445555554
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.26 E-value=0.031 Score=52.66 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|.++|..|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987754
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.25 E-value=0.019 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998764
No 278
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.23 E-value=0.0031 Score=47.65 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|-|+|++|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998765
No 279
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.21 E-value=0.0033 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|+.|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 280
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.026 Score=50.42 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=47.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccc--cccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQV--EDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
-++|.++||+|.|||+|.+.++..-.+ .+.|....-+.+.. ..++..=... ...-...+..++.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 378999999999999999999986533 33444444444332 1222111111 2334455666677777
Q ss_pred CCCeE--EEEEeCC
Q 043252 294 FGKKF--LLVLDDV 305 (337)
Q Consensus 294 ~~kr~--LlVlDdv 305 (337)
.++.. ++.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 65544 5567888
No 281
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.0061 Score=52.70 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=42.3
Q ss_pred ccccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 188 EAKVYGRETEKK---EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 188 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
-.+++|.++.+. -|++.|.+++.=++...+-|..+|++|.|||.+|+.+.+..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 356889887764 46777877654456778899999999999999999999853
No 282
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.18 E-value=0.016 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999998764
No 283
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.18 E-value=0.025 Score=46.39 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=59.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceE--EEEeCCCCCHHHHHHHHHHHhhCCCCC-----CCCC-------H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKA--WTCVSDDFDVIRLTKSILLSIASDQNV-----DNHD-------L 282 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~~~~~il~~~~~~~~~-----~~~~-------~ 282 (337)
..|-|++-.|.||||.|-.+.-.. ....+.+.+ |+.-.........+..+ .+...... ...+ .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999996654321 111222211 22222122333333332 11100000 0011 2
Q ss_pred HHHHHHHHHHcCCCeE-EEEEeCCCCC---ChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 283 NKLQEELKKQLFGKKF-LLVLDDVWNE---NYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 283 ~~~~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
....+..++.+....| |||||.+-.. ..-+.+.+...|...+.+..||+|-|+-
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233445555655555 9999999421 1223445666665556677899998863
No 284
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.18 E-value=0.051 Score=51.49 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=19.5
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~ 237 (337)
.+++|+|+.|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 489999999999999999984
No 285
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.17 E-value=0.0096 Score=46.68 Aligned_cols=41 Identities=24% Similarity=0.131 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
++.+++-+.|...- ..-.+|.+.|.-|.|||||++.+....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554321 123499999999999999999998753
No 286
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.17 E-value=0.022 Score=55.63 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=69.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|....+.++++.+..-.. .-.-|.|+|..|+||++||+.++....- .-...+.++++... ...+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~--~~~~e~e- 274 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIP--DDVVESE- 274 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCC--HHHHHHH-
Confidence 4688988888777776653221 1235889999999999999998763211 11223455555432 2222221
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 335 (337)
+.+...............+.+ ....=.|+||+|..........|...+..+. ...|||.||..
T Consensus 275 --lFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 275 --LFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred --hcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 111111000000000000000 1122357899998776666666666554321 12378887754
No 287
>PF14516 AAA_35: AAA-like domain
Probab=96.16 E-value=0.1 Score=47.79 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=68.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-----CCHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-----FDVIR 262 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~ 262 (337)
.+..|.|...-+++.+.|..+. ..+.|.|+..+|||+|...+.+..+.. .|. .+++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHH
Confidence 3456788866677777776543 399999999999999999887753322 333 456766542 24555
Q ss_pred HHHHHHHHhhCCCCC----------CCCCHHHHHHHHHHHc---CCCeEEEEEeCCCC
Q 043252 263 LTKSILLSIASDQNV----------DNHDLNKLQEELKKQL---FGKKFLLVLDDVWN 307 (337)
Q Consensus 263 ~~~~il~~~~~~~~~----------~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~ 307 (337)
++..+...+...-.. ...........+.+++ .+++.+|+||++..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 666665554332210 1112223334444432 26899999999964
No 288
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.16 E-value=0.06 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|+.|+|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999964
No 289
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.15 E-value=0.027 Score=49.78 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD 257 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 257 (337)
.-+++.|.|++|+|||+|+.++.... .+. =+.+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~~-Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-ASR-GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhC-CCcEEEEEecCC
Confidence 45799999999999999998764431 111 235677877643
No 290
>PRK04040 adenylate kinase; Provisional
Probab=96.15 E-value=0.0049 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 291
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.13 E-value=0.0047 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998664
No 292
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.12 E-value=0.018 Score=49.18 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=50.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-CCHHHHHHHHHHHhhCCCC-----CCCCCH-H------
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQN-----VDNHDL-N------ 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~~~~~~~-----~~~~~~-~------ 283 (337)
.-++|.|..|+|||+|++.+.++.. -+..+++.+.+. ..+.++..++...-..... ...... .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4789999999999999999987632 223477777654 3445555555433111100 011111 1
Q ss_pred ---HHHHHHHHHcCCCeEEEEEeCC
Q 043252 284 ---KLQEELKKQLFGKKFLLVLDDV 305 (337)
Q Consensus 284 ---~~~~~l~~~L~~kr~LlVlDdv 305 (337)
...+.++. +++..|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12333444 799999999999
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.071 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++.|+|+.|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888653
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.072 Score=44.15 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCC-Ch-hcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 282 LNKLQEELKKQLFGKKFLLVLDDVWNE-NY-TDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 282 ~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~-~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
-++-.-.+.+.+-++.-||+=|.-.-. ++ -.|+.+.-.-.-+..|..||+.|.+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 344445566777788888888876321 22 35554433323456799999999764
No 295
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.12 E-value=0.02 Score=58.30 Aligned_cols=52 Identities=25% Similarity=0.160 Sum_probs=36.2
Q ss_pred ccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.++.|.+..++.|.+.+.-+-. .+-...+-+.++|++|+|||+||+.+.+.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34577888887777766542110 01123456889999999999999999985
No 296
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.11 E-value=0.019 Score=52.93 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=56.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..|.|.|+.|+||||+.+.+... +..+...+++. +.++... ..... ..+..... ...+.......++..|+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 48999999999999999988763 33333444443 2222111 00000 00000000 1111223456677778778
Q ss_pred eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
.=.|++|++.+. +.+..... ....|-.|+.|+.
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~H 228 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLH 228 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEc
Confidence 889999999653 44443222 2234555665554
No 297
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.0051 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 298
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.046 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-...+.++|+.|+||||+|+.+..
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHH
Confidence 345788999999999999988865
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.10 E-value=0.029 Score=52.18 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=48.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~~ 291 (337)
-.++.|.|.+|+|||||+..+.... ...-..++|++.... ...+.. -...++..... ...+.+.+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999998887542 122235677765443 333222 22333322111 22344555554432
Q ss_pred HcCCCeEEEEEeCCC
Q 043252 292 QLFGKKFLLVLDDVW 306 (337)
Q Consensus 292 ~L~~kr~LlVlDdv~ 306 (337)
.+.-+||+|.+.
T Consensus 157 ---~~~~lVVIDSIq 168 (372)
T cd01121 157 ---LKPDLVIIDSIQ 168 (372)
T ss_pred ---cCCcEEEEcchH
Confidence 355689999984
No 300
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.10 E-value=0.023 Score=53.47 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=47.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHHHHHhhCCCCC------CCCCHHH-----
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQNV------DNHDLNK----- 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~~~~~~~~------~~~~~~~----- 284 (337)
..++|+|..|+|||||++.+..... .....+ +.+.. .-.+.++..+.+..-...... +......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---CCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4899999999999999998886422 111222 22222 233444544443332111110 1111111
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVWN 307 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~~ 307 (337)
..-.+.+++ ++++.||++||+..
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 222344444 58999999999943
No 301
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.09 E-value=0.0018 Score=59.46 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=67.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
..+.+.++|.|||||||++-.+.. +...|..-.|+.--.++ +...+.......+..... +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 357899999999999999988765 56667655555444444 444444444444554332 2233444566777
Q ss_pred CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 294 FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 294 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.++|.++|+||.-+- .+.-..+...+..+...-.|+.|+|.
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre 126 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSRE 126 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHh
Confidence 789999999998432 11222222233333334456666653
No 302
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.09 E-value=0.0048 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++|.|+|+.|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 48999999999999999999873
No 303
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.08 E-value=0.027 Score=53.04 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=49.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC----CC-C-CHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV----DN-H-DLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~----~~-~-~~~-----~ 284 (337)
..++|+|..|+|||||++.++... ..+..+.+-+.+.. .+.+++.+++..-...... .+ . ... .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999998632 12344455555543 3344555554331111100 11 1 111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChH
Confidence 222244444 6899999999993
No 304
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.08 E-value=0.038 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+-.|+|++|+|||+|+..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 667899999999999988864
No 305
>PRK08149 ATP synthase SpaL; Validated
Probab=96.08 E-value=0.024 Score=53.40 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=49.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHHHHHhhCCCCC------CCCCH-----HH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQNV------DNHDL-----NK 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~~~~~~~~------~~~~~-----~~ 284 (337)
..++|+|..|+|||||++.++..... +.++...+.. ..++.++..+++......... +.... ..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 48999999999999999999874221 2222333332 234556666666543221100 11111 11
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVWN 307 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~~ 307 (337)
....+.+++ ++++.||++||+..
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 223334444 58999999999943
No 306
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.047 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999987754
No 307
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.068 Score=49.02 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=33.4
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
+++=++|+|++...+...++.|...|..-.+++.+|++|.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 455588999998888889999998888767778777777653
No 308
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.06 E-value=0.044 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 309
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.13 Score=45.88 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=32.7
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+++=++|+|++.....+.++.+...|..-..++.+|++|.+
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 55568899999888788999999888776677777777765
No 310
>PRK00625 shikimate kinase; Provisional
Probab=96.05 E-value=0.005 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 311
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.05 E-value=0.0056 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.8
Q ss_pred EEEEccCCCchHHHHHHHHhcc
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~ 240 (337)
|.|+|..|+|||||.+.++..+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 312
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.05 E-value=0.029 Score=53.29 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=52.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~-----~ 284 (337)
.-++|.|..|+|||||+..+....... +=+.++++-+.+.. .+.+++.+++..-...... +..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999998876543221 11346666665543 4456666666432111100 111111 1
Q ss_pred HHHHHHHHc---CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL---FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L---~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++|++.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 233355555 6899999999993
No 313
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.04 E-value=0.029 Score=52.45 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=36.7
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKD--------DSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.++.++.+.-.+... ........+-|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889988888886666531 0001122467899999999999999999875
No 314
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.007 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999998864
No 315
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.02 E-value=0.0046 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998763
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.065 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++.++|+.|+||||++.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999999888753
No 317
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.025 Score=53.44 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=49.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH-----
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN----- 283 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~----- 283 (337)
-..++|+|..|+|||||++.+++... .+..+.+-+.+.. .+.++..+.+..-...... +.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 34789999999999999999987432 1334445555433 3344554444332111100 111111
Q ss_pred HHHHHHHHHc--CCCeEEEEEeCCC
Q 043252 284 KLQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 284 ~~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
...-.+.+++ +++..||++||+.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1222344444 5899999999993
No 318
>PRK05922 type III secretion system ATPase; Validated
Probab=96.01 E-value=0.048 Score=51.46 Aligned_cols=86 Identities=13% Similarity=0.249 Sum_probs=48.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHHHHHhhCCCCC----CCC--CHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQNV----DNH--DLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~~~~~~~~----~~~--~~~-----~ 284 (337)
..++|+|..|+|||||.+.+.... ..+....+.+.. .....+++.+........... .+. ... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999998642 122333333332 223345555544333222110 111 111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 223344444 5899999999993
No 319
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.00 E-value=0.0074 Score=49.60 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999998864
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.00 E-value=0.066 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|++++|+.|+||||++.+++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999988864
No 321
>PHA00729 NTP-binding motif containing protein
Probab=95.99 E-value=0.011 Score=50.64 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998764
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.98 E-value=0.05 Score=53.13 Aligned_cols=125 Identities=23% Similarity=0.307 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHH-HHHHHHhcccccccccceEEEEeCCCCCH--HHHHHHHHHHhh
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTT-LAQLVYNDKQVEDHFDLKAWTCVSDDFDV--IRLTKSILLSIA 272 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~il~~~~ 272 (337)
...++|.+.+... .||.|+|..|+|||| |+|.+|.+- |...--|.+.++-.+ ..+.+.+.+.++
T Consensus 359 ~~R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 359 ACRDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 3445666666433 399999999999987 678888752 322224666666543 345555666654
Q ss_pred CCCCC---------CC----------CCHHHHHHHHHHHcCCCeEEEEEeCCCCCC--hhcH-HHhhccCCCCCCCcEEE
Q 043252 273 SDQNV---------DN----------HDLNKLQEELKKQLFGKKFLLVLDDVWNEN--YTDW-VHLSLPFQAGAQGSKII 330 (337)
Q Consensus 273 ~~~~~---------~~----------~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~-~~l~~~l~~~~~gs~ii 330 (337)
..... +. .+---|.+.|....-.|--.||+|...... .+-. ..+...+. ....-|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEE
Confidence 32110 00 111223344444444455588999986542 1111 12222222 23356899
Q ss_pred EEec
Q 043252 331 VTTR 334 (337)
Q Consensus 331 vTTR 334 (337)
|||-
T Consensus 505 VtSA 508 (1042)
T KOG0924|consen 505 VTSA 508 (1042)
T ss_pred Eeec
Confidence 9974
No 323
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.97 E-value=0.0095 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++.|.|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.015 Score=56.48 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
...+.+.++|++|.|||.||+.+.+. ...+|- .+..+ . ++... .......+...+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~----~----l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS----E----LLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH----H----Hhccc------cchHHHHHHHHHHHHH
Confidence 34568999999999999999999983 334442 22221 1 11100 1222333444455555
Q ss_pred CCCeEEEEEeCCC
Q 043252 294 FGKKFLLVLDDVW 306 (337)
Q Consensus 294 ~~kr~LlVlDdv~ 306 (337)
+...+.|.+|++.
T Consensus 333 ~~~p~iiFiDEiD 345 (494)
T COG0464 333 KLAPSIIFIDEID 345 (494)
T ss_pred cCCCcEEEEEchh
Confidence 6788999999994
No 325
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.96 E-value=0.013 Score=58.08 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.++.++.|...+... +.+.++|++|+||||+|+.+.... -..+|+..+|..-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 56889998888888777532 268899999999999999998642 22345667786553 345666777777
Q ss_pred HHhh
Q 043252 269 LSIA 272 (337)
Q Consensus 269 ~~~~ 272 (337)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6553
No 326
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.96 E-value=0.02 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|+|..|.|||||++.+...
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999988764
No 327
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.95 E-value=0.061 Score=46.77 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
-.++.|.|.+|+|||+++..+..+.- ..+=..++|++... +..++...+
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHH
Confidence 45999999999999999987765421 22112456666544 333444444
No 328
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.95 E-value=0.0071 Score=48.06 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=27.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD 256 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 256 (337)
++|.|+|+.|+|||||++.+.+.. .+..+...+..+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999998863 234455555666655
No 329
>PRK04328 hypothetical protein; Provisional
Probab=95.94 E-value=0.025 Score=49.69 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD 257 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 257 (337)
.-+++.|.|.+|.|||+|+..+.... .+ .-+..+|++...+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~-~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQ-MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEeeCC
Confidence 45799999999999999997765431 22 2345778887663
No 330
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.93 E-value=0.015 Score=51.44 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=53.8
Q ss_pred HHHHHHHHhhHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHcc-ccCChHHHHHHHHHHHHHHhhhhhhHHHH
Q 043252 13 VELLVNKLASEGIRLFARQGRIKDDLVKWKKKLVTIKAVLDDAEEK-KTTDDSVKLWLGELQNLAYDVEDLLDEFQ 87 (337)
Q Consensus 13 ~~~l~~kl~s~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~-~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~ 87 (337)
++.++++|-.+.-.......-++.+++-++.+|+.+|.||+..... ...-...+.+..++-..||++|+++|-+.
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 3444455544322222223446899999999999999999997443 33333489999999999999999999874
No 331
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.93 E-value=0.0064 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999764
No 332
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.93 E-value=0.02 Score=50.59 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC-------------------
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD------------------- 274 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~------------------- 274 (337)
+..+++.|+|.+|+|||+++.++... ...+...++||+.... ...++..+.+ ++-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 34679999999999999999777653 3344788999998874 3444444422 1110
Q ss_pred CC------CCCCCHHHHHHHHHHHcCC-CeEEEEEeCCC
Q 043252 275 QN------VDNHDLNKLQEELKKQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 275 ~~------~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 306 (337)
.. ....+...+...+.+.... +..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 0123456666777666532 36678999985
No 333
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.92 E-value=0.024 Score=53.91 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCH-----HH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDL-----NK 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~-----~~ 284 (337)
.-++|.|.+|+|||||+..+...... .+-+.++++-+.+.. .+.+++.++...-...... +.... ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 47899999999999999888775332 245677777666543 4455666655432111100 11111 12
Q ss_pred HHHHHHHHc---CCCeEEEEEeCC
Q 043252 285 LQEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 285 ~~~~l~~~L---~~kr~LlVlDdv 305 (337)
..-.+.+++ ++++.||++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 233455555 389999999999
No 334
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.92 E-value=0.007 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|+|+.|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999874
No 335
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.92 E-value=0.0057 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3688999999999999998764
No 336
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.13 Score=47.13 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc---cce-----EEEEeCCCCCHHHHHHHHH
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF---DLK-----AWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~-----~wv~v~~~~~~~~~~~~il 268 (337)
.-+++...+..+. -...+.+.|+.|+||+++|..+...---.... .|. -++.....+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 4456777775433 35688899999999999998875421000000 010 00001111111100
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
...........++..+ +.+.+ .+++=++|+|++...+...-+.|...|..-..++-+|++|.+
T Consensus 80 ---~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred ---ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 0000001122333222 22222 356668999999887777888888888776777878877765
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.91 E-value=0.058 Score=47.98 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+++.++|++|+||||++.++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999877643
No 338
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.91 E-value=0.0058 Score=48.62 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|+|+.|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 339
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.91 E-value=0.027 Score=58.12 Aligned_cols=47 Identities=30% Similarity=0.484 Sum_probs=39.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++||+.+.+.|...+..-. .....++.+.|..|+|||+|++.|..-
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 37899999999999987543 234569999999999999999999874
No 340
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.90 E-value=0.059 Score=49.01 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=47.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeC-CCCCHHHHHHHHHHHhhCCCCC------CCCCHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVS-DDFDVIRLTKSILLSIASDQNV------DNHDLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~il~~~~~~~~~------~~~~~~-----~ 284 (337)
..++|+|..|+|||||.+.+..... -++.....+. ..-++.++....+..-...... +..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999987422 1223333333 2334555555554432211100 111111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ +++..||++||+.
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccch
Confidence 222233333 5899999999983
No 341
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.89 E-value=0.018 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.++++.|+.|.|||||.+.+..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999975
No 342
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0094 Score=59.69 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=34.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.-++||++|++++++.|..... +- -.++|.+|+|||+++.-+..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHH
Confidence 3479999999999999986543 11 14689999999999865544
No 343
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.88 E-value=0.006 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 344
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.86 E-value=0.056 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 345
>PRK06217 hypothetical protein; Validated
Probab=95.86 E-value=0.0067 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHhcc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 346
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.85 E-value=0.031 Score=52.26 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=37.5
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKD--------DSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.++.++.+..++... ..........|.++|+.|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999888777541 1001112367899999999999999999764
No 347
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.85 E-value=0.0084 Score=46.43 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred EEEEccCCCchHHHHHHHHhccccccccc
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDKQVEDHFD 247 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 247 (337)
|.|+|.+|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999874 445563
No 348
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0067 Score=48.64 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 7899999999999999999875
No 349
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.84 E-value=0.0085 Score=52.12 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhcc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
++..+|.++||+|+||||..|.++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456789999999999999999998763
No 350
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.83 E-value=0.033 Score=52.58 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=49.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHHHHHhhCCC------CCCCCCHHH----
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQ------NVDNHDLNK---- 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~~~~~~------~~~~~~~~~---- 284 (337)
-..++|+|..|+|||||.+.+.+.. +.+..+++.+.. ...+.+++.+....-.... ..+......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3489999999999999999998642 233345555544 3344455555432110000 001111111
Q ss_pred -HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 -LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 -~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122344444 5899999999993
No 351
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.0096 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|+|++|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999763
No 352
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.83 E-value=0.066 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.+...
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 49999999999999999999864
No 353
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.82 E-value=0.079 Score=45.57 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++.|.|+.|.||||+.+.+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999998876
No 354
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.097 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.++..
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 355
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.81 E-value=0.066 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|+.|.|||||++.+..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 356
>PRK13949 shikimate kinase; Provisional
Probab=95.79 E-value=0.0076 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 357
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.79 E-value=0.037 Score=48.90 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=54.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccc--cccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH----
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQV--EDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN---- 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~---- 283 (337)
.-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+.. +..+++.++...-...... +.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 37899999999999999888765321 1234667888887654 4456666665432111100 111111
Q ss_pred -HHHHHHHHHc---CCCeEEEEEeCCC
Q 043252 284 -KLQEELKKQL---FGKKFLLVLDDVW 306 (337)
Q Consensus 284 -~~~~~l~~~L---~~kr~LlVlDdv~ 306 (337)
...-.+.+++ .+++.|+++||+.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1223344554 3789999999994
No 358
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.78 E-value=0.0081 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999764
No 359
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.78 E-value=0.032 Score=45.79 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=44.1
Q ss_pred EEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCC--C
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFG--K 296 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~--k 296 (337)
+.|.|..|+|||++|.++... .....+++.-...++.+ +...|...... .+ ......+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~-R~-~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKR-RP-AHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHh-CC-CCceEeecHHHHHHHHHhcCC
Confidence 678999999999999888643 22356777777777653 33333332211 12 222222222233333311 2
Q ss_pred eEEEEEeCC
Q 043252 297 KFLLVLDDV 305 (337)
Q Consensus 297 r~LlVlDdv 305 (337)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999998
No 360
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.77 E-value=0.044 Score=45.73 Aligned_cols=21 Identities=33% Similarity=0.207 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 361
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.77 E-value=0.038 Score=48.81 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred EEEEEEccCCCchHHHH-HHHHhcccccccccce-EEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHHH---
Q 043252 217 SVIPIIGMGGLGKTTLA-QLVYNDKQVEDHFDLK-AWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLNK--- 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~~--- 284 (337)
.-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++..++...-...... +......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999996 6665431 22333 555565543 3455665555432111100 1111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCCCC
Q 043252 285 --LQEELKKQL--FGKKFLLVLDDVWN 307 (337)
Q Consensus 285 --~~~~l~~~L--~~kr~LlVlDdv~~ 307 (337)
..-.+.+++ +++..||++||+..
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 112233333 58999999999943
No 362
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.75 E-value=0.016 Score=46.94 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 195 ETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 195 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.+++|.++|.. +++.++|..|+|||||...+..+
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 3567888888842 59999999999999999999875
No 363
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.75 E-value=0.013 Score=48.72 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=27.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC 253 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 253 (337)
.++|.|+|+.|+|||||++.+... ....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 358999999999999999999874 445564444443
No 364
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.071 Score=51.62 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=55.8
Q ss_pred ccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDSR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIR 262 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 262 (337)
++=|-++-+.+|.-.++.+-.+ +-....-|.+||++|+|||-||++|.|. ....| ++|-++ +
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----E 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----E 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----H
Confidence 3444556666666665544321 1223567899999999999999999995 44455 444432 1
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
++ ... ...+...+..-+.+.=..-.|.|.||.+..
T Consensus 581 Ll----NkY------VGESErAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 581 LL----NKY------VGESERAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred HH----HHH------hhhHHHHHHHHHHHhhcCCCeEEEecchhh
Confidence 11 111 112222233333334346789999999843
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.0088 Score=50.20 Aligned_cols=24 Identities=50% Similarity=0.523 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 469999999999999999999774
No 366
>PRK15453 phosphoribulokinase; Provisional
Probab=95.73 E-value=0.073 Score=47.17 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=42.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccc-eEEEEeCC--CCCHHHHHHHHH--HHhhCCC---CCCCCCHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL-KAWTCVSD--DFDVIRLTKSIL--LSIASDQ---NVDNHDLNKLQ 286 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~--~~~~~~~~~~il--~~~~~~~---~~~~~~~~~~~ 286 (337)
...+|+|.|.+|+||||+|+.+..... +... .+.++... .++....-..+. +.-+.+. .+++.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 356999999999999999998875211 1111 22233222 122222222221 1111111 13667788888
Q ss_pred HHHHHHcCC
Q 043252 287 EELKKQLFG 295 (337)
Q Consensus 287 ~~l~~~L~~ 295 (337)
+.++.+..+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877653
No 367
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.042 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-+.|+|||+.|+||+||.+.+..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 35799999999999999999874
No 368
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.73 E-value=0.041 Score=52.10 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=48.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC------CCCCCHH-----H
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN------VDNHDLN-----K 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~------~~~~~~~-----~ 284 (337)
-..++|.|..|+|||||.+.+....... ..+++..-.....+.++...+...-..... .+..... .
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 3589999999999999999998643221 123333323333445555555433211110 0111111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ +++..||++||+.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 222344444 5899999999993
No 369
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.72 E-value=0.014 Score=49.28 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.|++|+|+.|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35999999999999999999865
No 370
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.71 E-value=0.012 Score=47.55 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=46.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE-------eCC--CCCHH---HHHH---HHHHHhhCCCCC---
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC-------VSD--DFDVI---RLTK---SILLSIASDQNV--- 277 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------v~~--~~~~~---~~~~---~il~~~~~~~~~--- 277 (337)
..+|-|.|.+|+||||||+.+... ....-....++. ++. .|+.. +-++ .+...+......
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 358999999999999999999874 222222233332 111 23322 1122 222222222110
Q ss_pred -CCCCHHHHHHHHHHHcCCCeEEEEEeCC
Q 043252 278 -DNHDLNKLQEELKKQLFGKKFLLVLDDV 305 (337)
Q Consensus 278 -~~~~~~~~~~~l~~~L~~kr~LlVlDdv 305 (337)
......+..+..++.+...+|+-|.=+.
T Consensus 80 a~isp~~~~R~~~R~~~~~~~f~eVyv~~ 108 (156)
T PF01583_consen 80 AFISPYREDREWARELIPNERFIEVYVDC 108 (156)
T ss_dssp E----SHHHHHHHHHHHHTTEEEEEEEES
T ss_pred eeccCchHHHHHHHHhCCcCceEEEEeCC
Confidence 2233456667777777666888777655
No 371
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.71 E-value=0.008 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 372
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.008 Score=48.76 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.4
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~ 237 (337)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999998885
No 373
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.70 E-value=0.005 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++.|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5999999999999999999974
No 374
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.68 E-value=0.099 Score=53.29 Aligned_cols=102 Identities=15% Similarity=0.229 Sum_probs=51.7
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH--cCC
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ--LFG 295 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~--L~~ 295 (337)
+..|.|.+|.||||+++.+..-.+.. ...+....+.. .....+....+ ....++..+...+... .-.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg-----~Aa~~L~~~~g---~~a~Ti~~~~~~~~~~~~~~~ 438 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSG-----KAAEGLQAESG---IESRTLASLEYAWANGRDLLS 438 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcH-----HHHHHHHhccC---CceeeHHHHHhhhccCcccCC
Confidence 78899999999999999987532111 12333333321 11111211111 1222333322111110 013
Q ss_pred CeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 296 KKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
+.-|||+|++.-.+......|..... ..|++||+.
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLV 473 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLV 473 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEE
Confidence 45699999997655455555543221 357888764
No 375
>PRK13947 shikimate kinase; Provisional
Probab=95.68 E-value=0.0088 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 376
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.68 E-value=0.072 Score=46.13 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
-.++.|.|..|+|||||+.++.... .+.. ...++++.. .+..+++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 4599999999999999985544321 1222 234566533 3455666555
No 377
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.017 Score=45.63 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=41.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~ 295 (337)
.+-|.|.|.+|+|||||+..+... | ..-|+++++-.....+.. ..........-+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~------~-~~~~i~isd~vkEn~l~~----gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK------T-GLEYIEISDLVKENNLYE----GYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH------h-CCceEehhhHHhhhcchh----cccccccCccccHHHHHHHHHHHHhc
Confidence 457899999999999999998753 1 134666665332222221 11111111344566777777777654
Q ss_pred C
Q 043252 296 K 296 (337)
Q Consensus 296 k 296 (337)
.
T Consensus 76 G 76 (176)
T KOG3347|consen 76 G 76 (176)
T ss_pred C
Confidence 3
No 378
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.67 E-value=0.048 Score=52.84 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=47.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEE-eCCCCCHHHHHHHHHHHhhCCC---CCCCCC-----HHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC-VSDDFDVIRLTKSILLSIASDQ---NVDNHD-----LNKLQE 287 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~il~~~~~~~---~~~~~~-----~~~~~~ 287 (337)
.-..|+|++|+|||||++.+.+.. ...+-++.++|. +.+-.. ++ .+|-+.+.... ..+... ...+.-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpe--EV-tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPE--EV-TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchh--hH-HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 478999999999999999998742 122334444433 333221 11 23333332110 001111 112233
Q ss_pred HHHHHc--CCCeEEEEEeCCC
Q 043252 288 ELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 288 ~l~~~L--~~kr~LlVlDdv~ 306 (337)
.+.++| .++..||++|++.
T Consensus 493 ~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCch
Confidence 344444 6899999999994
No 379
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.66 E-value=0.011 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCchHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3589999999999999999976
No 380
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.65 E-value=0.039 Score=45.41 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--CCCCCHHHHHHHHHHHcCC
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--VDNHDLNKLQEELKKQLFG 295 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 295 (337)
++.|.|.+|+||||+|..+...... ..+++.....++. +....|-........ ........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999988754111 2334444444433 344444433322211 0111122344445443433
Q ss_pred CeEEEEEeCC
Q 043252 296 KKFLLVLDDV 305 (337)
Q Consensus 296 kr~LlVlDdv 305 (337)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 23 7889987
No 381
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.65 E-value=0.051 Score=54.54 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=69.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++... -...| +.|++.... ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCC-hHHHHHHh
Confidence 3578888888777777654321 122478999999999999999987421 12223 344544432 22222333
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC---C--------CcEEEEEecC
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA---Q--------GSKIIVTTRN 335 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTTR~ 335 (337)
+............. .+. ....=.|+||++..........|...|..+. . ..|||.||..
T Consensus 397 fg~~~~~~~~~~~g------~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSENGRLS------KFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccCCCCC------cee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 32221100000000 000 1123358999998776666666766664321 1 2467777653
No 382
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.65 E-value=0.027 Score=43.51 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHH----HHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVE----LLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~----~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|..-..+.+++ .+..+ ...+.-|++.+|..|+|||.+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666555554444 44333 3456789999999999999988777654
No 383
>PRK14530 adenylate kinase; Provisional
Probab=95.65 E-value=0.0093 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 384
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.64 E-value=0.083 Score=50.60 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=50.3
Q ss_pred EEEEEEccCCCchHHHH-HHHHhcccc-----cccccceEEEEeCCCCCHHHHHHHHHHHhhC-CCCC----CCCC--HH
Q 043252 217 SVIPIIGMGGLGKTTLA-QLVYNDKQV-----EDHFDLKAWTCVSDDFDVIRLTKSILLSIAS-DQNV----DNHD--LN 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~-~~~~----~~~~--~~ 283 (337)
.-++|.|..|+|||+|| -.+.+...+ .++-..++++-+.+..+.-.-+.+.++.-+. .... ...+ ..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46899999999999997 555554322 1233467788887765433223333333221 1100 1111 11
Q ss_pred H-----HHHHHHHHc--CCCeEEEEEeCCCC
Q 043252 284 K-----LQEELKKQL--FGKKFLLVLDDVWN 307 (337)
Q Consensus 284 ~-----~~~~l~~~L--~~kr~LlVlDdv~~ 307 (337)
. ..-.+.+++ +++..|||+||+..
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 122233333 58999999999944
No 385
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.64 E-value=0.087 Score=44.01 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=26.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccc--------cceEEEEeCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHF--------DLKAWTCVSDD 257 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~ 257 (337)
.+..|.|++|+||||++..+....-....| ..++|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 388999999999999998876543222122 25678876665
No 386
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.64 E-value=0.0095 Score=47.82 Aligned_cols=21 Identities=48% Similarity=0.706 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 387
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.04 Score=52.20 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-CCHHHHHHHHHHHhhCCCCC------CCCCHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-FDVIRLTKSILLSIASDQNV------DNHDLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~~~~~~~~------~~~~~~-----~ 284 (337)
..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-...... +..... .
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999987632 1223333333332 23444444444332111100 111111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
....+.+++ ++++.||++||+.
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecchh
Confidence 222344444 6899999999993
No 388
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.63 E-value=0.012 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....|.|+|++|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 567899999999999999999865
No 389
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.018 Score=47.36 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
...+.|.|+.|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999863
No 390
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.01 Score=50.87 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 34899999999999999999963
No 391
>PHA02774 E1; Provisional
Probab=95.61 E-value=0.045 Score=53.13 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-+..|..+|.. .++...+.|+|++|.|||.+|..+.+-
T Consensus 420 fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~~ 457 (613)
T PHA02774 420 FLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIKF 457 (613)
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44556666632 234569999999999999999998874
No 392
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.60 E-value=0.043 Score=54.47 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=45.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc-cccceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED-HFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|.++.++.+...+.... -+.++|++|+||||+++.+.+. +.. .|...+++.-+ ..+...++..+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--------~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~-~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--------NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNP-EDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--------CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCC-CCCchHHHHHH
Confidence 568899988888877775322 4559999999999999999864 322 23333333222 12334455555
Q ss_pred HHHh
Q 043252 268 LLSI 271 (337)
Q Consensus 268 l~~~ 271 (337)
..++
T Consensus 87 ~~~~ 90 (608)
T TIGR00764 87 PAGE 90 (608)
T ss_pred HHhh
Confidence 5444
No 393
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.60 E-value=0.017 Score=53.07 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=38.0
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+-+.++|.++.+..|...+.++ .+.-|.|.|..|.||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999998888888777654 3456779999999999999999764
No 394
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.59 E-value=0.012 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999764
No 395
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.59 E-value=0.04 Score=53.05 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=35.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|....+..+...+..-.. .-..+.|.|..|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3588888887777766643221 2346889999999999999999875
No 396
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.047 Score=50.42 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=49.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~~ 291 (337)
-++|.|-|.+|+|||||.-.+.... ...- .+.||+-.+ +..++- --...++..... ...+.+.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEE--S~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEE--SLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCc--CHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 4699999999999999998888752 2222 466665444 333321 122334322221 23445555444444
Q ss_pred HcCCCeEEEEEeCCCC
Q 043252 292 QLFGKKFLLVLDDVWN 307 (337)
Q Consensus 292 ~L~~kr~LlVlDdv~~ 307 (337)
.+.-|+|+|.+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 5677999999944
No 397
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.57 E-value=0.047 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998864
No 398
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.57 E-value=0.0079 Score=61.19 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++.|.|+.|.|||||.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 46899999999999999998864
No 399
>PRK13975 thymidylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 400
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.56 E-value=0.051 Score=51.33 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=50.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC-----CCC-CHHH----
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV-----DNH-DLNK---- 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~-----~~~-~~~~---- 284 (337)
-..++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.+++...+..-...... ... ....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 34899999999999999999987532 2456677666543 3344444433221111100 111 1111
Q ss_pred -HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 -LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 -~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 122233444 6999999999994
No 401
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.55 E-value=0.03 Score=48.68 Aligned_cols=63 Identities=25% Similarity=0.226 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHH
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRL 263 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 263 (337)
+...+++.|.... .+..+|+|.|++|+|||||.-.+......+++=-.++=|.=|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4456666665432 25679999999999999999877653222222222333444455544333
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.54 E-value=0.0088 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998764
No 403
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.54 E-value=0.044 Score=42.37 Aligned_cols=36 Identities=17% Similarity=-0.086 Sum_probs=24.6
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEE
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC 253 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 253 (337)
.+.|.|+.|.|||+.+..+.............+|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999977765432222344556654
No 404
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.53 E-value=0.025 Score=47.68 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=31.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
++++|.+..+..|.-.... ..-+.++|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988888777666643 24789999999999999999864
No 405
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.51 E-value=0.065 Score=51.86 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=53.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCC--------------CCCCC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQ--------------NVDNH 280 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~--------------~~~~~ 280 (337)
.-+++.|.|++|+|||||+.++.... .+ .=+.+++++..+ +..++...+ +.++-+. .+...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~-~~-~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA-CA-NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999997776542 11 223456666554 445555443 3332111 11223
Q ss_pred CHHHHHHHHHHHcCC-CeEEEEEeCCC
Q 043252 281 DLNKLQEELKKQLFG-KKFLLVLDDVW 306 (337)
Q Consensus 281 ~~~~~~~~l~~~L~~-kr~LlVlDdv~ 306 (337)
..+.....+.+.+.. +.-+||+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 446677777777643 44589999984
No 406
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.50 E-value=0.025 Score=47.26 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+...+........ ..+.|+|+.|+|||||++.+...
T Consensus 13 ~~~~~l~~~v~~g-------~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 13 LQAAYLWLAVEAR-------KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHHhCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence 4444555554332 48999999999999999998763
No 407
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.49 E-value=0.043 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|+|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 458999999999999999998764
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.48 E-value=0.012 Score=48.37 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.47 E-value=0.013 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|..|+|||||.+.++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEEccCCCccccceeeecc
Confidence 4899999999999999999975
No 410
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.47 E-value=0.041 Score=47.45 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=51.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC--------------CCCC--
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD--------------QNVD-- 278 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~--------------~~~~-- 278 (337)
.-+++.|.|.+|+|||+|+.++.... .++.=+.++|++...+ ...+...+- +++-+ ....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 45699999999999999997654321 2221234677777554 344444432 22110 0001
Q ss_pred ---CCCHHHHHHHHHHHcCC-CeEEEEEeCC
Q 043252 279 ---NHDLNKLQEELKKQLFG-KKFLLVLDDV 305 (337)
Q Consensus 279 ---~~~~~~~~~~l~~~L~~-kr~LlVlDdv 305 (337)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 35677777777777643 3469999988
No 411
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.47 E-value=0.011 Score=47.54 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 412
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.46 E-value=0.03 Score=53.91 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred cccccchhHHHHHHHHHhc---C-CCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLK---D-DSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|.+..++.+...... . ..-+-...+-|.++|++|.|||.+|+.+.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4567776666555442211 0 0001234567899999999999999999875
No 413
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.015 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999877653
No 414
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.013 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++|+|+.|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999963
No 415
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.45 E-value=0.062 Score=47.23 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=40.7
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC--CCHHHHHHHHHHHhh--CCC---CCCCCCHHHHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD--FDVIRLTKSILLSIA--SDQ---NVDNHDLNKLQEELK 290 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~~~--~~~---~~~~~~~~~~~~~l~ 290 (337)
+|+|.|..|+||||+++.+.......+ .....++...- ++-...-..+..... .+. .+++.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998875321111 01223332211 121122212222111 111 136677788888888
Q ss_pred HHcCCC
Q 043252 291 KQLFGK 296 (337)
Q Consensus 291 ~~L~~k 296 (337)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777655
No 416
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.45 E-value=0.095 Score=49.59 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=47.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC-CCCHHHHHHHHHHHhhCCCC-----CCCCC-HH-----
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD-DFDVIRLTKSILLSIASDQN-----VDNHD-LN----- 283 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~~~~~~~-----~~~~~-~~----- 283 (337)
-..++|.|..|+|||||.+.+..... .+....+.+.. ..++.++..+.......... ....+ ..
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 34789999999999999999987421 22233333333 33444554444332211110 01111 11
Q ss_pred HHHHHHHHHc--CCCeEEEEEeCCC
Q 043252 284 KLQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 284 ~~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
...-.+.+++ ++++.|+++|++.
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCch
Confidence 1222334444 5789999999994
No 417
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.45 E-value=0.083 Score=45.59 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=61.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC--------C-----------
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD--------Q----------- 275 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~--------~----------- 275 (337)
.-.++.|.|.+|+|||||+..+.... .+ .-+..+|++...+ ...+... ..+++.. .
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45799999999999999998765431 11 2245678876443 3333322 1111110 0
Q ss_pred ----CCCCCCHHHHHHHHHHHcCC---CeEEEEEeCCCCC---ChhcHHH----hhccCCCCCCCcEEEEEec
Q 043252 276 ----NVDNHDLNKLQEELKKQLFG---KKFLLVLDDVWNE---NYTDWVH----LSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 276 ----~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~---~~~~~~~----l~~~l~~~~~gs~iivTTR 334 (337)
.....+.+++...+++.++. +.-++|+|.+..- .+..-.. +...+. ..|..+|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~--~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN--RWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH--hCCCEEEEEec
Confidence 00123566677777766543 3458899998432 1111111 222222 35778888875
No 418
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.45 E-value=0.014 Score=49.59 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++++|+++|+.|+|||||..++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999888764
No 419
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.44 E-value=0.027 Score=46.94 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=59.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceE--EEEeCCCCCHHHHHHHH--HHHh--hCCC-CCC-C-----CCH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKA--WTCVSDDFDVIRLTKSI--LLSI--ASDQ-NVD-N-----HDL 282 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~~~~~i--l~~~--~~~~-~~~-~-----~~~ 282 (337)
...|-|+|..|-||||.|.-+.-.. ...-+.+.+ |+.-.........+..+ +... +... ... . ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA-VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 3589999999999999996654321 111121111 11111122333333321 0000 0000 000 0 011
Q ss_pred HHHHHHHHHHcCCCeE-EEEEeCCCCC---ChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 283 NKLQEELKKQLFGKKF-LLVLDDVWNE---NYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 283 ~~~~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
....+..++.+....| |||||.+-.. ..-+.+++...|...+.+..||+|=|+
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 2233445555655555 9999999432 123445666666655667789999875
No 420
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.44 E-value=0.015 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.44 E-value=0.044 Score=45.25 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=17.4
Q ss_pred EEEEEEccCCCchHH-HHHHHHh
Q 043252 217 SVIPIIGMGGLGKTT-LAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTt-La~~v~~ 238 (337)
..+.|.|..|.|||+ ++..++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 588999999999999 4455554
No 422
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.44 E-value=0.1 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|+|..|+|||||++.+...
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999988864
No 423
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.42 E-value=0.13 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 424
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.41 E-value=0.061 Score=51.22 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=52.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhccccccccc--ceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH----
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD--LKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN---- 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~---- 283 (337)
.-++|.|..|+|||||+..+.+.....+.+. .++++-+.+.. .+.+++.+++..-...... +.....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3789999999999999999887543321121 45666665543 4455666665332111110 111111
Q ss_pred -HHHHHHHHHc---CCCeEEEEEeCCC
Q 043252 284 -KLQEELKKQL---FGKKFLLVLDDVW 306 (337)
Q Consensus 284 -~~~~~l~~~L---~~kr~LlVlDdv~ 306 (337)
...-.+.+++ ++++.||++||+.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1223344555 4789999999993
No 425
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.41 E-value=0.014 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|+|+.|+|||||++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999864
No 426
>PRK14527 adenylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|+|++|+||||+|+.+...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 427
>PRK13409 putative ATPase RIL; Provisional
Probab=95.40 E-value=0.067 Score=53.02 Aligned_cols=23 Identities=48% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 428
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.079 Score=50.03 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=50.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC------CCCCC-----HHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN------VDNHD-----LNK 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~------~~~~~-----~~~ 284 (337)
-..++|+|..|+|||||.+.++..... ....+...-.....+.+++...+..-+.... .+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 348899999999999999999875321 1122222222335666666655544221110 01111 112
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVWN 307 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~~ 307 (337)
....+.+++ +++..||++||+..
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHH
Confidence 223344444 58999999999954
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.18 Score=44.67 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+++++|.+|+||||+++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 35999999999999999987754
No 430
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.38 E-value=0.16 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+..+|+|.|++|+|||||+..+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999887653
No 431
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.23 Score=41.07 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+-|.|+.|+|||||.+.+.-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 3788999999999999999964
No 432
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.34 E-value=0.055 Score=51.24 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=54.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC------CCCCHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV------DNHDLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~------~~~~~~-----~ 284 (337)
.-++|.|.+|+|||+|+..+..+.. +.+-+.++++-+.+.. .+.+++.++...-...... +..... .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999988876532 2234677788776654 3455666655431111100 111111 1
Q ss_pred HHHHHHHHc---CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL---FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L---~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChH
Confidence 233445555 4789999999993
No 433
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.035 Score=50.27 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+=|-++.+++|.+...-+=. -+-...+-|.++|++|.|||-||++|.+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3566788888888776532211 02345678999999999999999999985
No 434
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.085 Score=50.42 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=48.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~ 290 (337)
.-.++.|.|.+|+|||||+..+..... ..-..++|++..+. ...+... .+.++..... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 356999999999999999988876421 11234677776543 3333222 3334321110 2234555555443
Q ss_pred HHcCCCeEEEEEeCCC
Q 043252 291 KQLFGKKFLLVLDDVW 306 (337)
Q Consensus 291 ~~L~~kr~LlVlDdv~ 306 (337)
+ .+.=+||+|.+.
T Consensus 154 ~---~~~~lVVIDSIq 166 (446)
T PRK11823 154 E---EKPDLVVIDSIQ 166 (446)
T ss_pred h---hCCCEEEEechh
Confidence 3 244589999984
No 435
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.31 E-value=0.03 Score=47.82 Aligned_cols=20 Identities=55% Similarity=0.863 Sum_probs=17.8
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~ 237 (337)
.|+|+|-||+||||+|..+.
T Consensus 2 kIaI~GKGG~GKTtiaalll 21 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLL 21 (255)
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 68999999999999998744
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.30 E-value=0.03 Score=54.31 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=41.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEE
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTC 253 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 253 (337)
+++--.+-++++..||...-. +....+++.+.|++|+||||.++.+++.. .|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 344445677888888875332 22335699999999999999999998752 355566754
No 437
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.27 E-value=0.024 Score=55.45 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=36.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+...+.... ..-+.|+|+.|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988775432 235679999999999999999864
No 438
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.25 E-value=0.19 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..|+|+|..|+|||||+|.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999954
No 439
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.24 E-value=0.016 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|+|+.|.|||||++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999864
No 440
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.23 E-value=0.017 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999975
No 441
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.20 E-value=0.18 Score=46.04 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=35.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSIL 268 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il 268 (337)
..++|.|..|+|||+|++.+.+.. +-+.++++-+.+.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 489999999999999999998752 23467788776643 3455665543
No 442
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.20 E-value=0.086 Score=49.63 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=46.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCCCC------CCCCCHH-----H
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASDQN------VDNHDLN-----K 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~------~~~~~~~-----~ 284 (337)
..++|+|..|+|||||.+.+.+... .+..+...+.... .+.++...+...-..... .+..... .
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4799999999999999998886422 1233334444432 334444444332111100 0111111 1
Q ss_pred HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 285 LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 285 ~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
..-.+.+++ ++++.||++||+.
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChH
Confidence 222233444 5899999999993
No 443
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.20 E-value=0.018 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|++|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 444
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.20 E-value=0.17 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.+...
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999864
No 445
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.20 E-value=0.032 Score=51.12 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=35.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+.+||.+..+..|.-.+..+. ..-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 568999999988877776543 34577999999999999999964
No 446
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.19 E-value=0.015 Score=49.68 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|++|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 57889999999999999999865
No 447
>PLN02348 phosphoribulokinase
Probab=95.19 E-value=0.024 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+..-+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999864
No 448
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.18 E-value=0.16 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|+.|.|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999964
No 449
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.18 E-value=0.015 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
|+.|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 450
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.17 E-value=0.07 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 451
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.17 E-value=0.085 Score=50.39 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=59.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhccc-----cc----cccc-----------ceEEEE--e---CCCCCHHHHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQ-----VE----DHFD-----------LKAWTC--V---SDDFDVIRLTKSILLSI 271 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~----~~F~-----------~~~wv~--v---~~~~~~~~~~~~il~~~ 271 (337)
+-|++||+.|+|||||.+.+|-+.. +. .+|. ...|.. + -..-...+..+.++..+
T Consensus 417 srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrf 496 (614)
T KOG0927|consen 417 SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRF 496 (614)
T ss_pred cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHh
Confidence 4789999999999999999987521 11 1111 111100 0 00012334555666665
Q ss_pred hCCCCCCCCCHHHH-----HHH-HHHHcCCCeEEEEEeCCCCC-ChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 272 ASDQNVDNHDLNKL-----QEE-LKKQLFGKKFLLVLDDVWNE-NYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 272 ~~~~~~~~~~~~~~-----~~~-l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
+.....+.....++ ..- +....-...-|||||...+. +.+..+.+..++..- .|. ||++|.
T Consensus 497 gLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~-~Gg-vv~vSH 564 (614)
T KOG0927|consen 497 GLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF-PGG-VVLVSH 564 (614)
T ss_pred CCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-CCc-eeeeec
Confidence 54422122222111 111 12222345679999998764 445566666666543 344 555554
No 452
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.053 Score=51.60 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQ 292 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 292 (337)
...+..+.+.|++|+|||+||..+... ..|..+=-+ . ++++. +.. +......+...+...
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii---S---pe~mi-------G~s---EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII---S---PEDMI-------GLS---ESAKCAHIKKIFEDA 594 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe---C---hHHcc-------Ccc---HHHHHHHHHHHHHHh
Confidence 345778889999999999999988753 456533222 1 11100 000 111122333444445
Q ss_pred cCCCeEEEEEeCCCC
Q 043252 293 LFGKKFLLVLDDVWN 307 (337)
Q Consensus 293 L~~kr~LlVlDdv~~ 307 (337)
-+..--.||+||+..
T Consensus 595 YkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIER 609 (744)
T ss_pred hcCcceEEEEcchhh
Confidence 556677999999944
No 453
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.14 E-value=0.028 Score=49.70 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 199 KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 199 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
.+|+..|... .++..+|+|.|.+|+|||||.-.+-....-+.+=-.++=|.-|.+++--.++.+=
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 4455555433 2357799999999999999997776543333443344555666666655555443
No 454
>PRK04182 cytidylate kinase; Provisional
Probab=95.14 E-value=0.019 Score=47.41 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.13 E-value=0.093 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|+|..|+|||||.+.+...
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998864
No 456
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.11 E-value=0.018 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.++|.+|+|||||++.++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 457
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.11 E-value=0.18 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|+|+.|.|||||++.+...
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998653
No 458
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.10 E-value=0.027 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.10 E-value=0.018 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 460
>PRK08356 hypothetical protein; Provisional
Probab=95.10 E-value=0.023 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~ 237 (337)
.+|.|+|++|+||||+|+.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999983
No 461
>PLN02200 adenylate kinase family protein
Probab=95.09 E-value=0.022 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|++|+||||+|+.+...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 462
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.09 E-value=0.016 Score=47.22 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=17.1
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999763
No 463
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.062 Score=52.39 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=39.0
Q ss_pred cccccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCchHHHHHHHHhcccccccc
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF 246 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 246 (337)
.-+++=|.|+-+.+|.+...-+-.. +-...+-|..+|++|+|||++|+.+.+. ....|
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 4455667777766666554322110 2245678999999999999999999985 34445
No 464
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.08 E-value=0.016 Score=51.58 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=18.7
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 3789999999999999877754
No 465
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.07 E-value=0.034 Score=42.95 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+|.+.|.=|.||||++|.+...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999999864
No 466
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.05 E-value=0.13 Score=49.29 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=47.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~ 290 (337)
.-.++.|.|.+|+|||||+..+..... +. =..++|++..+. ..++... ...++.... ....+.+.+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a-~~-g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA-KN-QMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-hc-CCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 456999999999999999988865321 11 124677765443 3333221 222221110 02234555554443
Q ss_pred HHcCCCeEEEEEeCCCC
Q 043252 291 KQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 291 ~~L~~kr~LlVlDdv~~ 307 (337)
+ .+.-+||+|.+..
T Consensus 168 ~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 E---ENPQACVIDSIQT 181 (454)
T ss_pred h---cCCcEEEEecchh
Confidence 3 2444899999843
No 467
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.04 E-value=0.076 Score=51.73 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=36.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|....+..+.+.+..-.. .-.-|.|.|..|.||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999888888877753321 2347899999999999999999974
No 468
>PRK13946 shikimate kinase; Provisional
Probab=95.03 E-value=0.019 Score=47.86 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 469
>PRK14529 adenylate kinase; Provisional
Probab=95.03 E-value=0.094 Score=45.07 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|.|++|+||||+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~ 23 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKK 23 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988764
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.03 E-value=0.066 Score=47.39 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=42.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
..+.|.|+.|.||||+++.+.+. +...-..++.+.-+..+.... ..++..... ... ...+.++..|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~~-~~~---~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVNEK-AGL---TFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeCCc-CCc---CHHHHHHHHhccC
Confidence 48999999999999999987653 211101122221111111110 011111110 111 2455666677666
Q ss_pred eEEEEEeCCCCC
Q 043252 297 KFLLVLDDVWNE 308 (337)
Q Consensus 297 r~LlVlDdv~~~ 308 (337)
.=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 778899999764
No 471
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.02 E-value=0.023 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.4
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHH
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
+++.++|++.|-||+||||++-.+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA 27 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTL 27 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHH
Confidence 4567999999999999999886664
No 472
>PRK13948 shikimate kinase; Provisional
Probab=95.01 E-value=0.024 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.++|+.|+||||+++.+...
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 473
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.00 E-value=0.023 Score=43.31 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 474
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.00 E-value=0.049 Score=46.65 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=30.9
Q ss_pred EEEEEccCCCchHHHHHHHHhccc-----ccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQ-----VEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
+..|.|++|.||||++..+..... ....-...+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987766554320 1123344555555555566667666666
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.00 E-value=0.025 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999888653
No 476
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.99 E-value=0.021 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.++.-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 477
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.99 E-value=0.021 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 478
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.98 E-value=0.13 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|+|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 348999999999999999999864
No 479
>PRK14532 adenylate kinase; Provisional
Probab=94.98 E-value=0.02 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|.|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999753
No 480
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.96 E-value=0.02 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 481
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.96 E-value=0.023 Score=46.48 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999763
No 482
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.94 E-value=0.26 Score=51.46 Aligned_cols=102 Identities=12% Similarity=0.207 Sum_probs=50.2
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH--HcCC
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKK--QLFG 295 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~--~L~~ 295 (337)
++.|.|.+|.||||+.+.+..-.+.. ...+....... ....-+.. .......++..+...+.. ..-.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTG-----kAA~~L~e---~tGi~a~TI~sll~~~~~~~~~l~ 432 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSG-----IAAENLEG---GSGIASRTIASLEHGWGQGRDLLT 432 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcH-----HHHHHHhh---ccCcchhhHHHHHhhhcccccccc
Confidence 66799999999999988765421111 12333333221 11111111 111122222222111100 0112
Q ss_pred CeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 296 KKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
+.-|||+|++--.+...+..|..... ..|++||+.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~--~~garvVLV 467 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAA--DAGAKVVLV 467 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhh--hCCCEEEEE
Confidence 45599999997665555655543322 357888875
No 483
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.032 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 484
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.94 E-value=0.13 Score=51.07 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=57.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhcc-cccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCC--CCCHHHHHHHHHHHc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDK-QVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVD--NHDLNKLQEELKKQL 293 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~L 293 (337)
++..|.|.+|.||||++..+...- +....=...+.+..+..--...+...+-..+..-...+ .........-+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 488999999999999998887532 11111123555555544344444444432221100000 000000111222222
Q ss_pred C----C--------Ce---EEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 294 F----G--------KK---FLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 294 ~----~--------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
. + .. =+||+|+..--+......+...++ +++|+|+.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlv 298 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFL 298 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEe
Confidence 1 1 11 289999986655555666666665 46788764
No 485
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.93 E-value=0.14 Score=45.32 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
+...++|..|+|||+-++.+++.. .....+..+..++...+...+........ ..........+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~---~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGAT---DGTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHccC
Confidence 388899999999999999998741 22233456666676666666665554432 234455666677777888
Q ss_pred eEEEEEeCCCCCChhcHHHhhcc
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLP 319 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~ 319 (337)
.=+|+.|+........++.++..
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred cceeeeehhhccChHHHHHHHHH
Confidence 88999999877666666666543
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.93 E-value=0.024 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||++.++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 487
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.033 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 488
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.92 E-value=0.041 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+..++.|.|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988874
No 489
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.91 E-value=0.018 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 490
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.91 E-value=0.019 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++.|.|+.|.||||+.+.+.-
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 46999999999999999988753
No 491
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.91 E-value=0.023 Score=45.06 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
+-|.++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999997653
No 492
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.90 E-value=0.084 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|+|..|+|||||.+.+...
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 357999999999999999999864
No 493
>PRK06820 type III secretion system ATPase; Validated
Probab=94.90 E-value=0.096 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|+|..|+|||||++.+...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhcc
Confidence 37899999999999999988864
No 494
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.89 E-value=0.058 Score=44.76 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=28.5
Q ss_pred EEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
+.|.|++|+|||+|+..+.... .+.. ..++|++... +...+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~-~~~g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG-LARG-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHCC-CcEEEEECCC--CHHHHHHH
Confidence 6789999999999998775532 1111 3466777654 34444443
No 495
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.88 E-value=0.023 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|.|||||.+.+..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 496
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.87 E-value=0.23 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-..++|+|+.|.|||||++.+..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHcc
Confidence 45899999999999999999864
No 497
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.87 E-value=0.023 Score=45.91 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 498
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.86 E-value=0.02 Score=49.83 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.1
Q ss_pred EEccCCCchHHHHHHHHhcc
Q 043252 221 IIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 221 I~G~gGiGKTtLa~~v~~~~ 240 (337)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998753
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.86 E-value=0.028 Score=45.69 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+++.|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 500
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.86 E-value=0.023 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|+|+.|+||||+++.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5888999999999999999764
Done!