Query 043252
Match_columns 337
No_of_seqs 301 out of 1883
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.1E-24 3.7E-29 211.5 14.4 134 192-336 131-275 (549)
2 1vt4_I APAF-1 related killer D 99.8 6.3E-21 2.2E-25 190.9 12.6 132 191-336 130-275 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 2.8E-20 9.6E-25 196.2 13.6 138 186-336 121-267 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 1.1E-18 3.6E-23 170.9 11.8 135 188-336 123-267 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.8 4.7E-19 1.6E-23 135.0 7.1 79 12-90 2-82 (115)
6 1w5s_A Origin recognition comp 99.3 2.2E-12 7.4E-17 120.2 9.4 147 189-335 22-188 (412)
7 2qby_B CDC6 homolog 3, cell di 99.2 1.4E-11 4.9E-16 113.6 8.7 146 189-336 20-174 (384)
8 1fnn_A CDC6P, cell division co 99.2 1E-10 3.4E-15 108.0 12.7 146 189-335 17-168 (389)
9 2v1u_A Cell division control p 99.2 7.2E-11 2.5E-15 108.8 11.6 118 189-308 19-142 (387)
10 2qen_A Walker-type ATPase; unk 99.2 5.3E-11 1.8E-15 108.1 8.9 133 187-335 10-173 (350)
11 2qby_A CDC6 homolog 1, cell di 99.1 8.2E-11 2.8E-15 108.3 7.2 144 188-335 19-172 (386)
12 2fna_A Conserved hypothetical 99.0 8.5E-10 2.9E-14 100.3 11.0 133 187-335 11-179 (357)
13 1njg_A DNA polymerase III subu 99.0 1.8E-09 6.3E-14 92.3 10.9 134 189-335 23-165 (250)
14 2chg_A Replication factor C sm 99.0 3.1E-09 1.1E-13 89.7 12.0 124 189-335 17-141 (226)
15 1sxj_B Activator 1 37 kDa subu 98.8 9.8E-09 3.3E-13 92.1 8.4 124 189-335 21-146 (323)
16 3te6_A Regulatory protein SIR3 98.8 2.3E-08 7.8E-13 89.3 10.2 117 189-308 20-144 (318)
17 1jbk_A CLPB protein; beta barr 98.6 4.5E-08 1.5E-12 80.4 6.9 45 189-239 22-66 (195)
18 1iqp_A RFCS; clamp loader, ext 98.6 4.8E-08 1.6E-12 87.7 6.9 124 189-335 25-149 (327)
19 2chq_A Replication factor C sm 98.4 5.6E-07 1.9E-11 80.3 9.2 121 189-335 17-141 (319)
20 1jr3_A DNA polymerase III subu 98.4 9.2E-07 3.1E-11 80.8 10.2 135 189-335 16-158 (373)
21 2p65_A Hypothetical protein PF 98.4 5.1E-07 1.7E-11 73.8 6.1 45 189-239 22-66 (187)
22 3ec2_A DNA replication protein 98.3 1.1E-06 3.6E-11 72.0 7.7 121 194-335 19-142 (180)
23 3n70_A Transport activator; si 98.3 1.8E-06 6.1E-11 68.1 8.7 113 190-335 2-115 (145)
24 2w58_A DNAI, primosome compone 98.3 1.2E-06 4.2E-11 73.0 7.1 119 196-335 36-158 (202)
25 1sxj_D Activator 1 41 kDa subu 98.3 1.7E-06 5.9E-11 78.4 8.3 134 189-334 37-171 (353)
26 3u61_B DNA polymerase accessor 98.2 3E-06 1E-10 76.1 9.1 119 189-335 26-145 (324)
27 1hqc_A RUVB; extended AAA-ATPa 98.2 1.4E-06 4.8E-11 78.1 5.5 50 189-239 12-61 (324)
28 3syl_A Protein CBBX; photosynt 98.2 7E-06 2.4E-10 73.0 9.6 128 190-334 32-177 (309)
29 3h4m_A Proteasome-activating n 98.1 2.6E-06 8.7E-11 75.0 5.7 52 188-239 16-74 (285)
30 3co5_A Putative two-component 98.1 1.7E-06 5.7E-11 68.1 3.9 110 189-334 4-114 (143)
31 1sxj_E Activator 1 40 kDa subu 98.1 1E-05 3.5E-10 73.4 8.8 44 189-238 14-58 (354)
32 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.1E-05 3.9E-10 69.7 8.4 51 189-239 6-62 (262)
33 3bos_A Putative DNA replicatio 98.0 1.3E-06 4.5E-11 74.4 1.6 60 189-256 28-90 (242)
34 1sxj_C Activator 1 40 kDa subu 98.0 1.5E-05 5.2E-10 72.0 8.6 123 189-334 25-148 (340)
35 3uk6_A RUVB-like 2; hexameric 98.0 2.2E-05 7.4E-10 71.6 9.5 48 188-239 43-93 (368)
36 3pfi_A Holliday junction ATP-d 98.0 1.7E-05 5.9E-10 71.4 8.6 50 189-239 29-78 (338)
37 2cvh_A DNA repair and recombin 98.0 3.1E-05 1.1E-09 65.0 9.5 87 216-308 20-117 (220)
38 3pvs_A Replication-associated 97.9 3E-05 1E-09 72.8 9.6 103 189-322 26-132 (447)
39 2z4s_A Chromosomal replication 97.9 3.6E-05 1.2E-09 72.1 10.2 102 216-335 130-236 (440)
40 1sxj_A Activator 1 95 kDa subu 97.9 2.6E-05 8.8E-10 74.7 8.5 135 189-334 39-187 (516)
41 4fcw_A Chaperone protein CLPB; 97.9 3.7E-05 1.3E-09 68.2 8.3 123 190-321 18-144 (311)
42 2gno_A DNA polymerase III, gam 97.9 7E-05 2.4E-09 66.5 10.0 119 193-335 1-121 (305)
43 3eie_A Vacuolar protein sortin 97.8 4.5E-05 1.5E-09 68.4 8.5 52 188-239 17-74 (322)
44 1d2n_A N-ethylmaleimide-sensit 97.8 3.7E-05 1.3E-09 67.1 7.5 47 190-239 34-87 (272)
45 1a5t_A Delta prime, HOLB; zinc 97.8 0.00017 5.8E-09 65.0 11.7 117 195-335 8-147 (334)
46 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00043 1.5E-08 62.0 14.2 52 188-239 11-68 (322)
47 2bjv_A PSP operon transcriptio 97.8 3.1E-05 1.1E-09 67.3 6.5 47 189-239 6-52 (265)
48 1l8q_A Chromosomal replication 97.8 7.7E-05 2.6E-09 66.8 9.3 115 198-335 23-140 (324)
49 2kjq_A DNAA-related protein; s 97.8 1.4E-05 4.7E-10 63.3 3.6 23 217-239 37-59 (149)
50 1ojl_A Transcriptional regulat 97.7 6.9E-05 2.4E-09 66.6 7.9 47 189-239 2-48 (304)
51 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00037 1.3E-08 69.8 13.4 45 189-239 186-230 (758)
52 2zan_A Vacuolar protein sortin 97.6 0.00034 1.1E-08 65.6 11.5 52 188-239 133-190 (444)
53 3pxg_A Negative regulator of g 97.6 0.00015 5E-09 68.5 9.1 45 189-239 180-224 (468)
54 1qvr_A CLPB protein; coiled co 97.6 0.00012 4.1E-09 74.4 8.6 45 189-239 170-214 (854)
55 2qp9_X Vacuolar protein sortin 97.6 0.00013 4.5E-09 66.3 8.0 51 189-239 51-107 (355)
56 2vhj_A Ntpase P4, P4; non- hyd 97.6 5.5E-05 1.9E-09 67.1 4.8 69 216-307 123-193 (331)
57 3d8b_A Fidgetin-like protein 1 97.6 0.00013 4.3E-09 66.4 7.2 51 189-239 84-140 (357)
58 3b9p_A CG5977-PA, isoform A; A 97.6 0.00028 9.7E-09 62.1 9.3 51 189-239 21-77 (297)
59 3pxi_A Negative regulator of g 97.5 0.00026 8.7E-09 71.0 9.0 45 189-239 180-224 (758)
60 1lv7_A FTSH; alpha/beta domain 97.5 0.00033 1.1E-08 60.4 8.5 52 188-239 11-68 (257)
61 3cf0_A Transitional endoplasmi 97.5 0.00059 2E-08 60.4 10.1 51 189-239 15-72 (301)
62 2qgz_A Helicase loader, putati 97.4 0.0001 3.6E-09 65.6 4.9 42 195-239 134-175 (308)
63 3hu3_A Transitional endoplasmi 97.4 0.00022 7.4E-09 67.6 6.7 51 189-239 204-261 (489)
64 3pxi_A Negative regulator of g 97.4 0.00016 5.6E-09 72.4 6.0 124 189-334 491-628 (758)
65 3vfd_A Spastin; ATPase, microt 97.3 0.00073 2.5E-08 62.1 9.4 52 188-239 114-171 (389)
66 3t15_A Ribulose bisphosphate c 97.3 0.00049 1.7E-08 60.7 7.5 25 215-239 35-59 (293)
67 1qvr_A CLPB protein; coiled co 97.3 0.0003 1E-08 71.5 6.5 136 189-334 558-709 (854)
68 4b4t_L 26S protease subunit RP 97.2 0.00076 2.6E-08 62.6 7.6 53 187-239 179-238 (437)
69 1v5w_A DMC1, meiotic recombina 97.2 0.0015 5.2E-08 58.9 9.5 92 215-307 121-230 (343)
70 3m6a_A ATP-dependent protease 97.2 0.0011 3.9E-08 63.6 9.0 51 189-239 81-131 (543)
71 4b4t_J 26S protease regulatory 97.2 0.00049 1.7E-08 63.0 6.0 53 187-239 146-205 (405)
72 1xp8_A RECA protein, recombina 97.1 0.0015 5.3E-08 59.3 9.1 85 216-307 74-163 (366)
73 4b4t_K 26S protease regulatory 97.1 0.00077 2.6E-08 62.5 7.2 53 187-239 170-229 (428)
74 3hr8_A Protein RECA; alpha and 97.1 0.0015 5.2E-08 59.0 8.8 86 215-307 60-150 (356)
75 2zr9_A Protein RECA, recombina 97.1 0.0016 5.5E-08 58.9 8.8 85 216-307 61-150 (349)
76 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0021 7.1E-08 54.0 9.1 114 217-335 24-167 (235)
77 2c9o_A RUVB-like 1; hexameric 97.1 0.00087 3E-08 63.0 7.1 47 189-239 37-86 (456)
78 2i1q_A DNA repair and recombin 97.1 0.0012 4.2E-08 58.9 7.6 90 216-306 98-214 (322)
79 3cf2_A TER ATPase, transitiona 97.0 0.0014 5E-08 65.3 8.4 99 188-307 203-308 (806)
80 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00052 1.8E-08 68.8 5.1 119 189-321 458-582 (758)
81 1n0w_A DNA repair protein RAD5 97.0 0.0014 4.7E-08 55.6 7.1 91 216-307 24-130 (243)
82 2cbz_A Multidrug resistance-as 97.0 0.0055 1.9E-07 52.1 10.8 23 217-239 32-54 (237)
83 2ce7_A Cell division protein F 97.0 0.0014 4.7E-08 61.7 7.5 98 189-307 16-119 (476)
84 1odf_A YGR205W, hypothetical 3 97.0 0.0053 1.8E-07 53.9 10.8 26 214-239 29-54 (290)
85 1u94_A RECA protein, recombina 97.0 0.0015 5.1E-08 59.2 7.4 85 216-307 63-152 (356)
86 4b4t_M 26S protease regulatory 97.0 0.00056 1.9E-08 63.5 4.4 53 187-239 179-238 (434)
87 3io5_A Recombination and repai 97.0 0.0032 1.1E-07 55.7 9.0 86 218-308 30-123 (333)
88 2b8t_A Thymidine kinase; deoxy 96.9 0.00057 2E-08 57.6 3.7 112 216-335 12-125 (223)
89 4b4t_H 26S protease regulatory 96.9 0.00081 2.8E-08 62.5 4.8 51 189-239 209-266 (467)
90 2z43_A DNA repair and recombin 96.9 0.0028 9.6E-08 56.6 8.2 90 216-306 107-213 (324)
91 1rz3_A Hypothetical protein rb 96.9 0.0015 5.1E-08 54.1 5.9 42 194-238 3-44 (201)
92 1in4_A RUVB, holliday junction 96.8 0.00048 1.6E-08 62.0 2.5 50 189-239 25-74 (334)
93 4b4t_I 26S protease regulatory 96.8 0.0019 6.4E-08 59.5 6.3 53 187-239 180-239 (437)
94 2pze_A Cystic fibrosis transme 96.8 0.013 4.6E-07 49.4 11.1 23 217-239 35-57 (229)
95 1ofh_A ATP-dependent HSL prote 96.7 0.0013 4.4E-08 58.0 4.6 51 189-239 15-73 (310)
96 2dhr_A FTSH; AAA+ protein, hex 96.7 0.005 1.7E-07 58.3 8.7 52 188-239 30-87 (499)
97 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6.2E-08 53.8 4.8 39 197-239 7-45 (208)
98 1ypw_A Transitional endoplasmi 96.6 0.0016 5.6E-08 65.5 5.3 53 187-239 202-261 (806)
99 2px0_A Flagellar biosynthesis 96.6 0.0088 3E-07 52.7 9.0 24 216-239 105-128 (296)
100 1pzn_A RAD51, DNA repair and r 96.6 0.0048 1.6E-07 55.7 7.4 93 215-308 130-243 (349)
101 3lda_A DNA repair protein RAD5 96.6 0.0038 1.3E-07 57.4 6.8 91 216-307 178-284 (400)
102 2r44_A Uncharacterized protein 96.5 0.0015 5.1E-08 58.4 3.9 43 189-239 27-69 (331)
103 3lw7_A Adenylate kinase relate 96.5 0.0012 4.2E-08 52.7 3.0 20 217-236 2-21 (179)
104 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0025 8.6E-08 60.4 5.4 43 189-239 22-64 (500)
105 3tqc_A Pantothenate kinase; bi 96.5 0.013 4.6E-07 52.1 9.7 45 192-238 70-114 (321)
106 1zp6_A Hypothetical protein AT 96.5 0.0018 6.3E-08 52.7 3.8 24 216-239 9-32 (191)
107 1gvn_B Zeta; postsegregational 96.5 0.0039 1.3E-07 54.7 6.1 42 197-239 15-56 (287)
108 1g5t_A COB(I)alamin adenosyltr 96.4 0.0016 5.3E-08 53.6 3.0 52 285-336 108-163 (196)
109 2r62_A Cell division protease 96.4 0.0019 6.3E-08 55.9 3.6 51 189-239 11-67 (268)
110 3bh0_A DNAB-like replicative h 96.4 0.019 6.4E-07 51.0 10.2 50 216-269 68-117 (315)
111 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.1E-08 52.2 3.1 23 217-239 4-26 (178)
112 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.2E-08 51.7 3.1 23 217-239 2-24 (173)
113 1kgd_A CASK, peripheral plasma 96.4 0.0019 6.5E-08 52.4 3.1 23 217-239 6-28 (180)
114 3vaa_A Shikimate kinase, SK; s 96.3 0.002 6.9E-08 53.1 3.3 23 216-238 25-47 (199)
115 1ly1_A Polynucleotide kinase; 96.3 0.0022 7.6E-08 51.6 3.5 22 217-238 3-24 (181)
116 2p5t_B PEZT; postsegregational 96.3 0.004 1.4E-07 53.5 5.2 43 196-239 13-55 (253)
117 3uie_A Adenylyl-sulfate kinase 96.3 0.0027 9.2E-08 52.4 3.9 24 216-239 25-48 (200)
118 3dm5_A SRP54, signal recogniti 96.3 0.016 5.5E-07 53.8 9.3 24 215-238 99-122 (443)
119 1kag_A SKI, shikimate kinase I 96.2 0.002 6.8E-08 51.6 2.6 23 217-239 5-27 (173)
120 3hws_A ATP-dependent CLP prote 96.2 0.0043 1.5E-07 56.2 5.1 50 190-239 16-74 (363)
121 4gp7_A Metallophosphoesterase; 96.2 0.0026 9E-08 51.1 3.1 23 216-238 9-31 (171)
122 1knq_A Gluconate kinase; ALFA/ 96.2 0.0039 1.3E-07 50.1 4.1 23 216-238 8-30 (175)
123 3tr0_A Guanylate kinase, GMP k 96.2 0.003 1E-07 52.0 3.5 23 217-239 8-30 (205)
124 3asz_A Uridine kinase; cytidin 96.2 0.0033 1.1E-07 52.2 3.7 25 215-239 5-29 (211)
125 1sky_E F1-ATPase, F1-ATP synth 96.2 0.006 2.1E-07 56.9 5.7 87 218-305 153-254 (473)
126 3kl4_A SRP54, signal recogniti 96.2 0.035 1.2E-06 51.4 10.8 24 215-238 96-119 (433)
127 3upu_A ATP-dependent DNA helic 96.2 0.024 8.3E-07 53.1 10.0 38 195-239 31-68 (459)
128 3tau_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 52.4 3.5 24 216-239 8-31 (208)
129 2rhm_A Putative kinase; P-loop 96.1 0.0036 1.2E-07 51.0 3.8 24 216-239 5-28 (193)
130 1nks_A Adenylate kinase; therm 96.1 0.0033 1.1E-07 51.1 3.5 23 217-239 2-24 (194)
131 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0069 2.4E-07 54.5 5.8 46 192-239 2-47 (359)
132 4eun_A Thermoresistant glucoki 96.1 0.0031 1.1E-07 52.0 3.3 24 216-239 29-52 (200)
133 3trf_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 51.1 3.2 23 216-238 5-27 (185)
134 1ye8_A Protein THEP1, hypothet 96.1 0.0032 1.1E-07 51.1 3.1 22 218-239 2-23 (178)
135 2bdt_A BH3686; alpha-beta prot 96.1 0.0036 1.2E-07 50.9 3.5 22 217-238 3-24 (189)
136 3t61_A Gluconokinase; PSI-biol 96.1 0.0029 1E-07 52.1 2.9 24 216-239 18-41 (202)
137 1ixz_A ATP-dependent metallopr 96.1 0.0053 1.8E-07 52.6 4.6 51 189-239 16-72 (254)
138 2orw_A Thymidine kinase; TMTK, 96.1 0.0011 3.7E-08 54.2 0.1 22 217-238 4-25 (184)
139 1ex7_A Guanylate kinase; subst 96.0 0.0032 1.1E-07 51.4 3.0 22 218-239 3-24 (186)
140 2j41_A Guanylate kinase; GMP, 96.0 0.0039 1.3E-07 51.4 3.5 24 216-239 6-29 (207)
141 2xxa_A Signal recognition part 96.0 0.058 2E-06 50.1 11.6 42 197-238 78-122 (433)
142 1kht_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 50.8 3.1 23 217-239 4-26 (192)
143 3a00_A Guanylate kinase, GMP k 96.0 0.0029 9.9E-08 51.6 2.5 23 217-239 2-24 (186)
144 2qt1_A Nicotinamide riboside k 96.0 0.0056 1.9E-07 50.7 4.3 25 215-239 20-44 (207)
145 1uf9_A TT1252 protein; P-loop, 96.0 0.0049 1.7E-07 50.6 3.8 24 215-238 7-30 (203)
146 1lvg_A Guanylate kinase, GMP k 95.9 0.0032 1.1E-07 51.9 2.6 22 217-238 5-26 (198)
147 2jaq_A Deoxyguanosine kinase; 95.9 0.004 1.4E-07 51.1 3.1 22 218-239 2-23 (205)
148 3jvv_A Twitching mobility prot 95.9 0.014 4.9E-07 52.7 7.0 108 217-336 124-231 (356)
149 2yvu_A Probable adenylyl-sulfa 95.9 0.0063 2.2E-07 49.4 4.2 25 215-239 12-36 (186)
150 2ze6_A Isopentenyl transferase 95.9 0.0046 1.6E-07 53.2 3.5 23 217-239 2-24 (253)
151 2qor_A Guanylate kinase; phosp 95.9 0.0037 1.3E-07 51.7 2.8 24 216-239 12-35 (204)
152 3iij_A Coilin-interacting nucl 95.9 0.0039 1.3E-07 50.3 2.8 24 216-239 11-34 (180)
153 1ukz_A Uridylate kinase; trans 95.9 0.0063 2.1E-07 50.1 4.1 25 215-239 14-38 (203)
154 1cke_A CK, MSSA, protein (cyti 95.9 0.0046 1.6E-07 51.8 3.3 22 217-238 6-27 (227)
155 1tev_A UMP-CMP kinase; ploop, 95.8 0.0054 1.8E-07 49.9 3.5 23 217-239 4-26 (196)
156 2c95_A Adenylate kinase 1; tra 95.8 0.0052 1.8E-07 50.1 3.4 24 216-239 9-32 (196)
157 2if2_A Dephospho-COA kinase; a 95.8 0.0049 1.7E-07 50.8 3.3 22 217-238 2-23 (204)
158 2bbw_A Adenylate kinase 4, AK4 95.8 0.0049 1.7E-07 52.6 3.3 23 216-238 27-49 (246)
159 1via_A Shikimate kinase; struc 95.8 0.0039 1.3E-07 50.1 2.6 22 218-239 6-27 (175)
160 3aez_A Pantothenate kinase; tr 95.8 0.0058 2E-07 54.3 3.8 25 215-239 89-113 (312)
161 1znw_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 51.0 3.3 23 216-238 20-42 (207)
162 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0058 2E-07 52.7 3.7 24 216-239 4-27 (260)
163 1g8p_A Magnesium-chelatase 38 95.8 0.0054 1.9E-07 55.0 3.7 45 189-239 24-68 (350)
164 1y63_A LMAJ004144AAA protein; 95.8 0.0064 2.2E-07 49.4 3.7 23 216-238 10-32 (184)
165 1htw_A HI0065; nucleotide-bind 95.8 0.0066 2.3E-07 48.2 3.7 24 216-239 33-56 (158)
166 1rj9_A FTSY, signal recognitio 95.8 0.006 2.1E-07 53.9 3.7 24 215-238 101-124 (304)
167 1jjv_A Dephospho-COA kinase; P 95.8 0.006 2E-07 50.4 3.5 22 217-238 3-24 (206)
168 3cm0_A Adenylate kinase; ATP-b 95.8 0.0061 2.1E-07 49.3 3.5 23 216-238 4-26 (186)
169 3ney_A 55 kDa erythrocyte memb 95.8 0.0057 1.9E-07 50.4 3.3 24 216-239 19-42 (197)
170 1iy2_A ATP-dependent metallopr 95.8 0.0088 3E-07 52.0 4.7 52 188-239 39-96 (278)
171 1zuh_A Shikimate kinase; alpha 95.8 0.0054 1.9E-07 48.8 3.1 25 215-239 6-30 (168)
172 1uj2_A Uridine-cytidine kinase 95.8 0.0062 2.1E-07 52.2 3.7 25 214-238 20-44 (252)
173 1qf9_A UMP/CMP kinase, protein 95.8 0.0077 2.6E-07 48.8 4.1 24 216-239 6-29 (194)
174 3fwy_A Light-independent proto 95.7 0.0058 2E-07 54.3 3.5 25 214-238 46-70 (314)
175 1xjc_A MOBB protein homolog; s 95.7 0.0059 2E-07 49.0 3.2 25 215-239 3-27 (169)
176 2hf9_A Probable hydrogenase ni 95.7 0.0079 2.7E-07 50.3 4.2 25 215-239 37-61 (226)
177 3ice_A Transcription terminati 95.7 0.0078 2.7E-07 54.7 4.3 35 200-239 163-197 (422)
178 2jeo_A Uridine-cytidine kinase 95.7 0.0069 2.3E-07 51.7 3.8 23 216-238 25-47 (245)
179 1um8_A ATP-dependent CLP prote 95.7 0.0097 3.3E-07 54.2 5.1 23 217-239 73-95 (376)
180 3umf_A Adenylate kinase; rossm 95.7 0.007 2.4E-07 50.7 3.7 26 214-239 27-52 (217)
181 2cdn_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 49.7 3.7 24 216-239 20-43 (201)
182 2plr_A DTMP kinase, probable t 95.7 0.0069 2.4E-07 50.0 3.7 23 217-239 5-27 (213)
183 1z6g_A Guanylate kinase; struc 95.7 0.005 1.7E-07 51.6 2.8 23 217-239 24-46 (218)
184 2iyv_A Shikimate kinase, SK; t 95.7 0.0045 1.6E-07 50.1 2.3 21 218-238 4-24 (184)
185 2bwj_A Adenylate kinase 5; pho 95.7 0.0061 2.1E-07 49.8 3.1 23 217-239 13-35 (199)
186 1s96_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 50.9 3.3 24 216-239 16-39 (219)
187 4a1f_A DNAB helicase, replicat 95.6 0.04 1.4E-06 49.4 8.5 86 217-306 47-166 (338)
188 1e6c_A Shikimate kinase; phosp 95.6 0.0055 1.9E-07 48.9 2.6 23 217-239 3-25 (173)
189 2pez_A Bifunctional 3'-phospho 95.6 0.0084 2.9E-07 48.3 3.7 23 216-238 5-27 (179)
190 1sq5_A Pantothenate kinase; P- 95.6 0.018 6E-07 51.0 6.0 24 215-238 79-102 (308)
191 1aky_A Adenylate kinase; ATP:A 95.6 0.0073 2.5E-07 50.5 3.3 24 216-239 4-27 (220)
192 2r6a_A DNAB helicase, replicat 95.6 0.051 1.7E-06 50.8 9.4 89 216-307 203-324 (454)
193 4e22_A Cytidylate kinase; P-lo 95.6 0.0074 2.5E-07 51.8 3.4 23 216-238 27-49 (252)
194 2pt5_A Shikimate kinase, SK; a 95.5 0.0073 2.5E-07 48.0 3.1 22 218-239 2-23 (168)
195 2vli_A Antibiotic resistance p 95.5 0.0051 1.7E-07 49.6 2.2 24 216-239 5-28 (183)
196 2x8a_A Nuclear valosin-contain 95.5 0.0066 2.3E-07 52.8 3.0 51 189-239 10-67 (274)
197 2pbr_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 49.0 3.2 22 218-239 2-23 (195)
198 4a74_A DNA repair and recombin 95.5 0.0082 2.8E-07 50.2 3.5 46 216-261 25-74 (231)
199 2ged_A SR-beta, signal recogni 95.5 0.014 4.7E-07 47.3 4.6 25 215-239 47-71 (193)
200 3k1j_A LON protease, ATP-depen 95.5 0.011 3.7E-07 57.6 4.6 43 189-239 41-83 (604)
201 1nn5_A Similar to deoxythymidy 95.5 0.0089 3E-07 49.5 3.5 24 216-239 9-32 (215)
202 2og2_A Putative signal recogni 95.4 0.019 6.4E-07 51.9 5.8 24 215-238 156-179 (359)
203 2ehv_A Hypothetical protein PH 95.4 0.0082 2.8E-07 50.9 3.3 23 216-238 30-52 (251)
204 3cmu_A Protein RECA, recombina 95.4 0.027 9.2E-07 61.3 7.8 85 215-306 1426-1515(2050)
205 2onk_A Molybdate/tungstate ABC 95.4 0.0085 2.9E-07 51.0 3.3 22 217-238 25-46 (240)
206 2wsm_A Hydrogenase expression/ 95.4 0.0083 2.8E-07 50.0 3.1 41 193-239 13-53 (221)
207 3b85_A Phosphate starvation-in 95.4 0.015 5.2E-07 48.3 4.7 22 218-239 24-45 (208)
208 2q6t_A DNAB replication FORK h 95.4 0.06 2E-06 50.2 9.3 51 216-269 200-250 (444)
209 1zd8_A GTP:AMP phosphotransfer 95.4 0.0085 2.9E-07 50.4 3.2 24 216-239 7-30 (227)
210 1gtv_A TMK, thymidylate kinase 95.4 0.0044 1.5E-07 51.4 1.3 22 218-239 2-23 (214)
211 1q57_A DNA primase/helicase; d 95.4 0.059 2E-06 51.0 9.4 89 216-307 242-365 (503)
212 3llm_A ATP-dependent RNA helic 95.4 0.029 1E-06 47.3 6.6 89 218-307 78-187 (235)
213 3b9q_A Chloroplast SRP recepto 95.4 0.0099 3.4E-07 52.5 3.7 24 215-238 99-122 (302)
214 3tif_A Uncharacterized ABC tra 95.4 0.0082 2.8E-07 51.0 3.0 22 217-238 32-53 (235)
215 2wwf_A Thymidilate kinase, put 95.4 0.0092 3.1E-07 49.3 3.3 24 216-239 10-33 (212)
216 2ffh_A Protein (FFH); SRP54, s 95.4 0.048 1.7E-06 50.4 8.4 24 216-239 98-121 (425)
217 2i3b_A HCR-ntpase, human cance 95.4 0.0076 2.6E-07 49.3 2.7 22 218-239 3-24 (189)
218 1m7g_A Adenylylsulfate kinase; 95.4 0.011 3.8E-07 49.0 3.7 24 216-239 25-48 (211)
219 2pcj_A ABC transporter, lipopr 95.3 0.0085 2.9E-07 50.4 3.0 22 217-238 31-52 (224)
220 3gfo_A Cobalt import ATP-bindi 95.3 0.014 4.7E-07 50.8 4.2 22 217-238 35-56 (275)
221 2f1r_A Molybdopterin-guanine d 95.3 0.0054 1.9E-07 49.4 1.5 23 217-239 3-25 (171)
222 3tlx_A Adenylate kinase 2; str 95.3 0.018 6E-07 49.1 4.8 25 215-239 28-52 (243)
223 1zak_A Adenylate kinase; ATP:A 95.3 0.009 3.1E-07 50.0 2.9 24 216-239 5-28 (222)
224 3b5x_A Lipid A export ATP-bind 95.3 0.086 3E-06 50.9 10.2 23 216-238 369-391 (582)
225 2grj_A Dephospho-COA kinase; T 95.3 0.013 4.5E-07 48.0 3.8 25 214-238 10-34 (192)
226 3e70_C DPA, signal recognition 95.2 0.013 4.3E-07 52.4 4.0 25 215-239 128-152 (328)
227 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 48.2 3.3 22 218-239 2-23 (197)
228 2v54_A DTMP kinase, thymidylat 95.2 0.012 4E-07 48.3 3.5 23 217-239 5-27 (204)
229 2f6r_A COA synthase, bifunctio 95.2 0.012 4.2E-07 51.3 3.8 23 215-237 74-96 (281)
230 3cf2_A TER ATPase, transitiona 95.2 0.063 2.1E-06 53.6 9.2 100 187-307 475-581 (806)
231 3lnc_A Guanylate kinase, GMP k 95.2 0.0065 2.2E-07 51.2 1.9 21 217-237 28-48 (231)
232 1g41_A Heat shock protein HSLU 95.2 0.022 7.6E-07 52.9 5.5 51 189-239 15-73 (444)
233 3fb4_A Adenylate kinase; psych 95.2 0.011 3.9E-07 49.0 3.3 22 218-239 2-23 (216)
234 1vht_A Dephospho-COA kinase; s 95.2 0.014 4.8E-07 48.6 3.8 23 216-238 4-26 (218)
235 1b0u_A Histidine permease; ABC 95.2 0.01 3.5E-07 51.2 3.0 22 217-238 33-54 (262)
236 3e1s_A Exodeoxyribonuclease V, 95.2 0.092 3.1E-06 50.6 10.0 102 217-332 205-312 (574)
237 3cmu_A Protein RECA, recombina 95.2 0.037 1.3E-06 60.3 7.8 85 216-307 383-472 (2050)
238 2yhs_A FTSY, cell division pro 95.1 0.026 9E-07 53.0 5.9 42 197-238 271-315 (503)
239 3be4_A Adenylate kinase; malar 95.1 0.0099 3.4E-07 49.6 2.8 23 217-239 6-28 (217)
240 1ji0_A ABC transporter; ATP bi 95.1 0.011 3.8E-07 50.3 3.0 22 217-238 33-54 (240)
241 3bgw_A DNAB-like replicative h 95.1 0.13 4.4E-06 47.9 10.5 49 216-268 197-245 (444)
242 1tue_A Replication protein E1; 95.1 0.019 6.4E-07 47.5 4.2 38 197-239 44-81 (212)
243 3dl0_A Adenylate kinase; phosp 95.1 0.013 4.4E-07 48.7 3.3 22 218-239 2-23 (216)
244 1g6h_A High-affinity branched- 95.1 0.012 3.9E-07 50.8 3.0 22 217-238 34-55 (257)
245 2d2e_A SUFC protein; ABC-ATPas 95.1 0.013 4.3E-07 50.3 3.3 22 217-238 30-51 (250)
246 2ck3_D ATP synthase subunit be 95.1 0.15 5E-06 47.6 10.5 65 200-270 142-207 (482)
247 1vma_A Cell division protein F 95.1 0.016 5.4E-07 51.3 4.0 25 215-239 103-127 (306)
248 1np6_A Molybdopterin-guanine d 95.1 0.013 4.5E-07 47.2 3.2 24 216-239 6-29 (174)
249 1mv5_A LMRA, multidrug resista 95.1 0.014 4.9E-07 49.7 3.6 23 216-238 28-50 (243)
250 2olj_A Amino acid ABC transpor 95.0 0.012 4E-07 50.9 3.0 22 217-238 51-72 (263)
251 4g1u_C Hemin import ATP-bindin 95.0 0.012 4E-07 51.0 3.0 22 217-238 38-59 (266)
252 1zu4_A FTSY; GTPase, signal re 95.0 0.037 1.3E-06 49.2 6.2 25 214-238 103-127 (320)
253 2zu0_C Probable ATP-dependent 95.0 0.013 4.6E-07 50.7 3.3 23 217-239 47-69 (267)
254 1sgw_A Putative ABC transporte 95.0 0.01 3.6E-07 49.5 2.5 22 217-238 36-57 (214)
255 2ff7_A Alpha-hemolysin translo 95.0 0.013 4.3E-07 50.2 3.0 22 217-238 36-57 (247)
256 3nwj_A ATSK2; P loop, shikimat 95.0 0.011 3.7E-07 50.7 2.6 22 217-238 49-70 (250)
257 1oix_A RAS-related protein RAB 94.9 0.015 5.1E-07 47.3 3.3 24 216-239 29-52 (191)
258 1vpl_A ABC transporter, ATP-bi 94.9 0.013 4.5E-07 50.4 3.0 22 217-238 42-63 (256)
259 1fx0_B ATP synthase beta chain 94.9 0.093 3.2E-06 49.1 8.9 99 201-305 155-275 (498)
260 3ake_A Cytidylate kinase; CMP 94.9 0.015 5.3E-07 47.7 3.3 21 218-238 4-24 (208)
261 2ixe_A Antigen peptide transpo 94.9 0.015 5E-07 50.5 3.2 22 217-238 46-67 (271)
262 1yrb_A ATP(GTP)binding protein 94.9 0.026 8.8E-07 48.3 4.8 26 213-238 11-36 (262)
263 3cmw_A Protein RECA, recombina 94.9 0.038 1.3E-06 59.4 6.9 86 216-308 383-473 (1706)
264 2ghi_A Transport protein; mult 94.9 0.015 5.2E-07 50.1 3.2 22 217-238 47-68 (260)
265 2qi9_C Vitamin B12 import ATP- 94.9 0.014 4.9E-07 49.9 3.0 22 217-238 27-48 (249)
266 3r20_A Cytidylate kinase; stru 94.9 0.016 5.5E-07 49.0 3.3 23 216-238 9-31 (233)
267 2eyu_A Twitching motility prot 94.8 0.019 6.4E-07 49.5 3.8 23 216-238 25-47 (261)
268 3p32_A Probable GTPase RV1496/ 94.8 0.034 1.2E-06 50.2 5.6 37 198-238 65-101 (355)
269 2yz2_A Putative ABC transporte 94.8 0.015 5E-07 50.4 3.0 22 217-238 34-55 (266)
270 2ihy_A ABC transporter, ATP-bi 94.8 0.015 5E-07 50.8 3.0 22 217-238 48-69 (279)
271 2zej_A Dardarin, leucine-rich 94.8 0.014 4.8E-07 47.1 2.8 21 218-238 4-24 (184)
272 3d3q_A TRNA delta(2)-isopenten 94.8 0.017 5.9E-07 51.6 3.5 23 217-239 8-30 (340)
273 3sr0_A Adenylate kinase; phosp 94.8 0.017 5.9E-07 47.9 3.3 73 218-307 2-85 (206)
274 2nq2_C Hypothetical ABC transp 94.8 0.015 5.1E-07 49.9 3.0 23 217-239 32-54 (253)
275 2xb4_A Adenylate kinase; ATP-b 94.8 0.017 5.9E-07 48.4 3.3 22 218-239 2-23 (223)
276 1e4v_A Adenylate kinase; trans 94.8 0.017 5.9E-07 47.9 3.3 22 218-239 2-23 (214)
277 2f9l_A RAB11B, member RAS onco 94.8 0.016 5.5E-07 47.3 3.0 24 216-239 5-28 (199)
278 2vp4_A Deoxynucleoside kinase; 94.7 0.016 5.6E-07 48.8 3.1 26 214-239 18-43 (230)
279 2v9p_A Replication protein E1; 94.7 0.017 5.8E-07 51.0 3.2 23 216-238 126-148 (305)
280 1ak2_A Adenylate kinase isoenz 94.7 0.019 6.5E-07 48.4 3.5 24 216-239 16-39 (233)
281 2dyk_A GTP-binding protein; GT 94.7 0.021 7.3E-07 44.4 3.6 23 217-239 2-24 (161)
282 2wji_A Ferrous iron transport 94.7 0.021 7.1E-07 45.1 3.5 23 217-239 4-26 (165)
283 1ltq_A Polynucleotide kinase; 94.7 0.019 6.5E-07 50.4 3.5 22 217-238 3-24 (301)
284 3sop_A Neuronal-specific septi 94.7 0.018 6.2E-07 49.9 3.2 21 218-238 4-24 (270)
285 3end_A Light-independent proto 94.6 0.021 7.2E-07 50.3 3.7 26 213-238 38-63 (307)
286 3a8t_A Adenylate isopentenyltr 94.6 0.024 8.1E-07 50.6 3.9 24 216-239 40-63 (339)
287 3crm_A TRNA delta(2)-isopenten 94.6 0.021 7.1E-07 50.8 3.5 23 217-239 6-28 (323)
288 2v3c_C SRP54, signal recogniti 94.5 0.029 9.9E-07 52.1 4.4 43 197-239 77-122 (432)
289 3l0o_A Transcription terminati 94.5 0.053 1.8E-06 49.2 5.9 36 199-239 163-198 (427)
290 1a7j_A Phosphoribulokinase; tr 94.5 0.013 4.3E-07 51.5 1.9 23 216-238 5-27 (290)
291 2ce2_X GTPase HRAS; signaling 94.5 0.021 7.2E-07 44.5 3.0 22 218-239 5-26 (166)
292 3exa_A TRNA delta(2)-isopenten 94.5 0.025 8.5E-07 50.0 3.7 22 217-238 4-25 (322)
293 2pjz_A Hypothetical protein ST 94.5 0.02 6.8E-07 49.4 3.0 22 217-238 31-52 (263)
294 1nlf_A Regulatory protein REPA 94.4 0.022 7.6E-07 49.4 3.2 22 217-238 31-52 (279)
295 3zvl_A Bifunctional polynucleo 94.4 0.023 7.9E-07 52.5 3.5 25 215-239 257-281 (416)
296 2wjg_A FEOB, ferrous iron tran 94.4 0.029 9.9E-07 45.1 3.7 24 216-239 7-30 (188)
297 1cr0_A DNA primase/helicase; R 94.3 0.023 7.9E-07 49.7 3.2 23 217-239 36-58 (296)
298 1nij_A Hypothetical protein YJ 94.3 0.024 8.3E-07 50.3 3.4 25 215-239 3-27 (318)
299 3qf4_A ABC transporter, ATP-bi 94.3 0.13 4.3E-06 49.8 8.6 23 216-238 369-391 (587)
300 3foz_A TRNA delta(2)-isopenten 94.3 0.031 1.1E-06 49.2 4.0 25 215-239 9-33 (316)
301 2qe7_A ATP synthase subunit al 94.3 0.048 1.6E-06 51.1 5.4 97 200-305 151-263 (502)
302 2j37_W Signal recognition part 94.3 0.054 1.8E-06 51.2 5.8 41 198-238 80-123 (504)
303 4eaq_A DTMP kinase, thymidylat 94.3 0.031 1.1E-06 47.1 3.8 25 215-239 25-49 (229)
304 1svm_A Large T antigen; AAA+ f 94.3 0.026 8.9E-07 51.4 3.4 24 216-239 169-192 (377)
305 2bbs_A Cystic fibrosis transme 94.3 0.025 8.5E-07 49.6 3.2 23 217-239 65-87 (290)
306 1ls1_A Signal recognition part 94.3 0.028 9.6E-07 49.4 3.6 24 216-239 98-121 (295)
307 3fvq_A Fe(3+) IONS import ATP- 94.2 0.025 8.6E-07 51.0 3.2 22 217-238 31-52 (359)
308 1z2a_A RAS-related protein RAB 94.2 0.033 1.1E-06 43.6 3.7 24 216-239 5-28 (168)
309 3nh6_A ATP-binding cassette SU 94.2 0.018 6.3E-07 50.8 2.3 23 216-238 80-102 (306)
310 1q3t_A Cytidylate kinase; nucl 94.2 0.03 1E-06 47.3 3.5 24 215-238 15-38 (236)
311 2r9v_A ATP synthase subunit al 94.2 0.066 2.3E-06 50.2 6.0 85 217-305 176-276 (515)
312 3vkw_A Replicase large subunit 94.2 0.12 4E-06 47.9 7.6 26 213-238 158-183 (446)
313 3con_A GTPase NRAS; structural 94.2 0.027 9.2E-07 45.4 3.1 23 217-239 22-44 (190)
314 3vr4_D V-type sodium ATPase su 94.1 0.044 1.5E-06 50.8 4.7 88 218-305 153-257 (465)
315 2nzj_A GTP-binding protein REM 94.1 0.037 1.3E-06 43.7 3.8 24 216-239 4-27 (175)
316 1u8z_A RAS-related protein RAL 94.1 0.028 9.7E-07 43.9 3.1 23 217-239 5-27 (168)
317 2lkc_A Translation initiation 94.1 0.043 1.5E-06 43.5 4.2 25 215-239 7-31 (178)
318 3kta_A Chromosome segregation 94.1 0.03 1E-06 45.0 3.2 21 218-238 28-48 (182)
319 2ocp_A DGK, deoxyguanosine kin 94.1 0.035 1.2E-06 47.0 3.7 24 216-239 2-25 (241)
320 2erx_A GTP-binding protein DI- 94.1 0.03 1E-06 44.0 3.1 23 217-239 4-26 (172)
321 3tui_C Methionine import ATP-b 94.1 0.029 9.8E-07 50.7 3.3 22 217-238 55-76 (366)
322 1c1y_A RAS-related protein RAP 94.0 0.031 1E-06 43.7 3.1 22 218-239 5-26 (167)
323 3hjn_A DTMP kinase, thymidylat 94.0 0.07 2.4E-06 43.8 5.3 85 218-305 2-90 (197)
324 1z08_A RAS-related protein RAB 94.0 0.03 1E-06 44.0 3.0 24 216-239 6-29 (170)
325 1z47_A CYSA, putative ABC-tran 94.0 0.03 1E-06 50.5 3.3 22 217-238 42-63 (355)
326 3thx_A DNA mismatch repair pro 94.0 0.072 2.4E-06 54.2 6.4 21 216-236 662-682 (934)
327 1kao_A RAP2A; GTP-binding prot 94.0 0.032 1.1E-06 43.5 3.0 23 217-239 4-26 (167)
328 1ek0_A Protein (GTP-binding pr 94.0 0.032 1.1E-06 43.7 3.1 22 218-239 5-26 (170)
329 1svi_A GTP-binding protein YSX 94.0 0.041 1.4E-06 44.5 3.8 25 215-239 22-46 (195)
330 1m7b_A RND3/RHOE small GTP-bin 94.0 0.031 1.1E-06 44.9 3.0 24 216-239 7-30 (184)
331 3t1o_A Gliding protein MGLA; G 94.0 0.031 1.1E-06 45.1 3.0 23 216-238 14-36 (198)
332 2aka_B Dynamin-1; fusion prote 94.0 0.077 2.6E-06 46.2 5.8 42 198-239 8-49 (299)
333 1z0j_A RAB-22, RAS-related pro 94.0 0.032 1.1E-06 43.8 3.0 23 217-239 7-29 (170)
334 1nrj_B SR-beta, signal recogni 93.9 0.037 1.3E-06 45.7 3.5 25 215-239 11-35 (218)
335 2gj8_A MNME, tRNA modification 93.9 0.04 1.4E-06 43.9 3.6 23 217-239 5-27 (172)
336 3ihw_A Centg3; RAS, centaurin, 93.9 0.033 1.1E-06 44.9 3.0 24 216-239 20-43 (184)
337 3rlf_A Maltose/maltodextrin im 93.9 0.032 1.1E-06 50.7 3.3 22 217-238 30-51 (381)
338 2yyz_A Sugar ABC transporter, 93.9 0.032 1.1E-06 50.4 3.3 22 217-238 30-51 (359)
339 1r8s_A ADP-ribosylation factor 93.9 0.033 1.1E-06 43.5 3.0 21 219-239 3-23 (164)
340 3q72_A GTP-binding protein RAD 93.9 0.032 1.1E-06 43.7 2.9 21 218-238 4-24 (166)
341 3ld9_A DTMP kinase, thymidylat 93.8 0.1 3.5E-06 43.7 6.1 25 215-239 20-44 (223)
342 2it1_A 362AA long hypothetical 93.8 0.033 1.1E-06 50.3 3.3 22 217-238 30-51 (362)
343 3pqc_A Probable GTP-binding pr 93.8 0.045 1.5E-06 44.1 3.8 25 215-239 22-46 (195)
344 3cmw_A Protein RECA, recombina 93.8 0.09 3.1E-06 56.6 6.9 84 215-305 1430-1518(1706)
345 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.035 1.2E-06 44.0 3.0 24 216-239 7-30 (177)
346 2qmh_A HPR kinase/phosphorylas 93.8 0.04 1.4E-06 45.2 3.4 23 217-239 35-57 (205)
347 2dr3_A UPF0273 protein PH0284; 93.8 0.034 1.2E-06 46.9 3.1 39 216-256 23-61 (247)
348 1g16_A RAS-related protein SEC 93.8 0.036 1.2E-06 43.5 3.0 23 217-239 4-26 (170)
349 2hxs_A RAB-26, RAS-related pro 93.8 0.061 2.1E-06 42.6 4.5 25 215-239 5-29 (178)
350 1fzq_A ADP-ribosylation factor 93.8 0.041 1.4E-06 44.1 3.4 25 215-239 15-39 (181)
351 1g29_1 MALK, maltose transport 93.8 0.035 1.2E-06 50.5 3.3 22 217-238 30-51 (372)
352 2cxx_A Probable GTP-binding pr 93.8 0.035 1.2E-06 44.6 3.0 22 218-239 3-24 (190)
353 3c5c_A RAS-like protein 12; GD 93.8 0.036 1.2E-06 44.8 3.0 24 216-239 21-44 (187)
354 1ky3_A GTP-binding protein YPT 93.8 0.046 1.6E-06 43.4 3.7 25 215-239 7-31 (182)
355 3gqb_B V-type ATP synthase bet 93.7 0.089 3.1E-06 48.7 5.9 87 218-305 149-260 (464)
356 2yv5_A YJEQ protein; hydrolase 93.7 0.053 1.8E-06 47.8 4.3 32 197-237 155-186 (302)
357 1r2q_A RAS-related protein RAB 93.7 0.037 1.3E-06 43.3 3.1 23 217-239 7-29 (170)
358 3q85_A GTP-binding protein REM 93.7 0.046 1.6E-06 42.9 3.6 22 217-238 3-24 (169)
359 1v43_A Sugar-binding transport 93.7 0.036 1.2E-06 50.3 3.3 22 217-238 38-59 (372)
360 2fn4_A P23, RAS-related protei 93.7 0.05 1.7E-06 43.1 3.9 25 215-239 8-32 (181)
361 1cp2_A CP2, nitrogenase iron p 93.7 0.041 1.4E-06 47.3 3.5 23 217-239 2-24 (269)
362 1lw7_A Transcriptional regulat 93.7 0.035 1.2E-06 50.3 3.1 23 216-238 170-192 (365)
363 1m2o_B GTP-binding protein SAR 93.7 0.038 1.3E-06 44.8 3.0 23 217-239 24-46 (190)
364 2qm8_A GTPase/ATPase; G protei 93.6 0.046 1.6E-06 49.0 3.8 24 215-238 54-77 (337)
365 2www_A Methylmalonic aciduria 93.6 0.045 1.6E-06 49.3 3.8 24 215-238 73-96 (349)
366 3tw8_B RAS-related protein RAB 93.6 0.033 1.1E-06 44.2 2.6 25 215-239 8-32 (181)
367 1z0f_A RAB14, member RAS oncog 93.6 0.04 1.4E-06 43.6 3.1 25 215-239 14-38 (179)
368 1f6b_A SAR1; gtpases, N-termin 93.6 0.03 1E-06 45.7 2.4 22 217-238 26-47 (198)
369 2afh_E Nitrogenase iron protei 93.6 0.045 1.6E-06 47.7 3.7 23 216-238 2-24 (289)
370 1pui_A ENGB, probable GTP-bind 93.6 0.024 8.3E-07 46.5 1.8 24 216-239 26-49 (210)
371 1p5z_B DCK, deoxycytidine kina 93.6 0.028 9.5E-07 48.4 2.2 25 215-239 23-47 (263)
372 4dsu_A GTPase KRAS, isoform 2B 93.6 0.04 1.4E-06 44.1 3.0 23 217-239 5-27 (189)
373 2bme_A RAB4A, RAS-related prot 93.6 0.04 1.4E-06 44.1 3.0 24 216-239 10-33 (186)
374 2qnr_A Septin-2, protein NEDD5 93.6 0.034 1.2E-06 49.0 2.8 21 218-238 20-40 (301)
375 2y8e_A RAB-protein 6, GH09086P 93.6 0.041 1.4E-06 43.6 3.0 23 217-239 15-37 (179)
376 2fz4_A DNA repair protein RAD2 93.5 0.23 7.9E-06 41.9 7.9 100 219-332 111-225 (237)
377 3d31_A Sulfate/molybdate ABC t 93.5 0.03 1E-06 50.4 2.3 22 217-238 27-48 (348)
378 3bc1_A RAS-related protein RAB 93.5 0.042 1.4E-06 44.1 3.1 25 215-239 10-34 (195)
379 2c61_A A-type ATP synthase non 93.5 0.077 2.6E-06 49.4 5.1 89 217-305 153-258 (469)
380 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.042 1.5E-06 43.8 3.1 23 217-239 6-28 (186)
381 2iwr_A Centaurin gamma 1; ANK 93.5 0.031 1.1E-06 44.4 2.2 24 216-239 7-30 (178)
382 2ewv_A Twitching motility prot 93.5 0.048 1.7E-06 49.6 3.7 23 216-238 136-158 (372)
383 2oil_A CATX-8, RAS-related pro 93.5 0.043 1.5E-06 44.3 3.0 24 216-239 25-48 (193)
384 2a9k_A RAS-related protein RAL 93.5 0.043 1.5E-06 43.7 3.1 24 216-239 18-41 (187)
385 1j8m_F SRP54, signal recogniti 93.4 0.04 1.4E-06 48.4 3.0 23 216-238 98-120 (297)
386 3eph_A TRNA isopentenyltransfe 93.4 0.046 1.6E-06 50.0 3.4 22 217-238 3-24 (409)
387 2efe_B Small GTP-binding prote 93.4 0.044 1.5E-06 43.5 3.0 24 216-239 12-35 (181)
388 2gza_A Type IV secretion syste 93.4 0.057 1.9E-06 48.9 4.1 23 217-239 176-198 (361)
389 3bwd_D RAC-like GTP-binding pr 93.4 0.044 1.5E-06 43.6 3.1 23 217-239 9-31 (182)
390 2cjw_A GTP-binding protein GEM 93.4 0.044 1.5E-06 44.5 3.0 23 216-238 6-28 (192)
391 3t5g_A GTP-binding protein RHE 93.4 0.05 1.7E-06 43.3 3.4 24 216-239 6-29 (181)
392 2xau_A PRE-mRNA-splicing facto 93.4 0.24 8.2E-06 49.5 8.9 33 197-237 98-130 (773)
393 1upt_A ARL1, ADP-ribosylation 93.4 0.06 2E-06 42.2 3.8 24 216-239 7-30 (171)
394 3llu_A RAS-related GTP-binding 93.4 0.044 1.5E-06 44.5 3.0 23 216-238 20-42 (196)
395 3cbq_A GTP-binding protein REM 93.4 0.035 1.2E-06 45.3 2.4 23 215-237 22-44 (195)
396 4edh_A DTMP kinase, thymidylat 93.4 0.14 4.9E-06 42.5 6.1 24 216-239 6-29 (213)
397 2atv_A RERG, RAS-like estrogen 93.4 0.046 1.6E-06 44.4 3.0 24 216-239 28-51 (196)
398 3gd7_A Fusion complex of cysti 93.3 0.045 1.5E-06 50.0 3.2 22 217-238 48-69 (390)
399 2ck3_A ATP synthase subunit al 93.3 0.086 2.9E-06 49.5 5.1 102 200-306 151-272 (510)
400 2g6b_A RAS-related protein RAB 93.3 0.048 1.6E-06 43.3 3.1 24 216-239 10-33 (180)
401 2qu8_A Putative nucleolar GTP- 93.3 0.061 2.1E-06 44.9 3.8 25 215-239 28-52 (228)
402 3kkq_A RAS-related protein M-R 93.3 0.072 2.5E-06 42.4 4.1 25 215-239 17-41 (183)
403 1gwn_A RHO-related GTP-binding 93.3 0.047 1.6E-06 44.9 3.0 24 216-239 28-51 (205)
404 2fg5_A RAB-22B, RAS-related pr 93.3 0.048 1.6E-06 44.1 3.0 24 216-239 23-46 (192)
405 1vg8_A RAS-related protein RAB 93.3 0.048 1.6E-06 44.5 3.0 25 215-239 7-31 (207)
406 4bas_A ADP-ribosylation factor 93.3 0.052 1.8E-06 43.9 3.3 26 214-239 15-40 (199)
407 1oxx_K GLCV, glucose, ABC tran 93.3 0.027 9.4E-07 50.8 1.6 22 217-238 32-53 (353)
408 1u0j_A DNA replication protein 93.2 0.1 3.6E-06 44.9 5.2 37 199-239 91-127 (267)
409 1zbd_A Rabphilin-3A; G protein 93.2 0.05 1.7E-06 44.3 3.1 24 216-239 8-31 (203)
410 2ew1_A RAS-related protein RAB 93.2 0.049 1.7E-06 44.7 3.0 24 216-239 26-49 (201)
411 3dz8_A RAS-related protein RAB 93.2 0.048 1.6E-06 44.0 3.0 24 216-239 23-46 (191)
412 1jr3_D DNA polymerase III, del 93.2 0.33 1.1E-05 43.2 8.8 96 216-334 18-115 (343)
413 1u0l_A Probable GTPase ENGC; p 93.2 0.081 2.8E-06 46.5 4.6 34 197-239 159-192 (301)
414 2p67_A LAO/AO transport system 93.2 0.059 2E-06 48.3 3.7 24 215-238 55-78 (341)
415 3oes_A GTPase rhebl1; small GT 93.2 0.05 1.7E-06 44.4 3.0 24 216-239 24-47 (201)
416 2gf9_A RAS-related protein RAB 93.1 0.052 1.8E-06 43.7 3.1 24 216-239 22-45 (189)
417 2obl_A ESCN; ATPase, hydrolase 93.1 0.051 1.8E-06 48.9 3.3 23 217-239 72-94 (347)
418 1ksh_A ARF-like protein 2; sma 93.1 0.049 1.7E-06 43.6 2.9 25 216-240 18-42 (186)
419 2bov_A RAla, RAS-related prote 93.1 0.073 2.5E-06 43.3 4.0 25 215-239 13-37 (206)
420 1zd9_A ADP-ribosylation factor 93.1 0.053 1.8E-06 43.7 3.1 24 216-239 22-45 (188)
421 3lv8_A DTMP kinase, thymidylat 93.1 0.14 4.7E-06 43.4 5.7 24 216-239 27-50 (236)
422 3reg_A RHO-like small GTPase; 93.1 0.053 1.8E-06 43.9 3.1 24 216-239 23-46 (194)
423 2a5j_A RAS-related protein RAB 93.1 0.053 1.8E-06 43.8 3.0 24 216-239 21-44 (191)
424 1mky_A Probable GTP-binding pr 93.1 0.13 4.6E-06 47.7 6.1 47 193-239 152-203 (439)
425 3tkl_A RAS-related protein RAB 93.1 0.054 1.8E-06 43.7 3.1 25 215-239 15-39 (196)
426 2q3h_A RAS homolog gene family 93.0 0.053 1.8E-06 44.1 3.0 24 216-239 20-43 (201)
427 1p9r_A General secretion pathw 93.0 0.091 3.1E-06 48.5 4.8 23 216-238 167-189 (418)
428 2o52_A RAS-related protein RAB 93.0 0.053 1.8E-06 44.2 3.0 24 216-239 25-48 (200)
429 2fh5_B SR-beta, signal recogni 93.0 0.056 1.9E-06 44.4 3.2 24 216-239 7-30 (214)
430 1ega_A Protein (GTP-binding pr 93.0 0.061 2.1E-06 47.3 3.5 24 216-239 8-31 (301)
431 1moz_A ARL1, ADP-ribosylation 93.0 0.036 1.2E-06 44.2 1.8 24 216-239 18-41 (183)
432 1tq4_A IIGP1, interferon-induc 93.0 0.089 3.1E-06 48.4 4.7 23 216-238 69-91 (413)
433 2axn_A 6-phosphofructo-2-kinas 93.0 0.065 2.2E-06 51.0 3.8 24 216-239 35-58 (520)
434 2p5s_A RAS and EF-hand domain 93.0 0.057 1.9E-06 43.9 3.1 24 216-239 28-51 (199)
435 1z06_A RAS-related protein RAB 93.0 0.057 2E-06 43.4 3.0 24 216-239 20-43 (189)
436 2h92_A Cytidylate kinase; ross 92.9 0.049 1.7E-06 45.1 2.7 22 217-238 4-25 (219)
437 2bcg_Y Protein YP2, GTP-bindin 92.9 0.057 2E-06 44.1 3.0 24 216-239 8-31 (206)
438 1x3s_A RAS-related protein RAB 92.9 0.058 2E-06 43.4 3.1 23 217-239 16-38 (195)
439 3clv_A RAB5 protein, putative; 92.9 0.085 2.9E-06 42.6 4.1 24 216-239 7-30 (208)
440 2zts_A Putative uncharacterize 92.9 0.12 4.1E-06 43.5 5.1 49 216-267 30-78 (251)
441 2j1l_A RHO-related GTP-binding 92.9 0.056 1.9E-06 44.7 3.0 24 216-239 34-57 (214)
442 2b6h_A ADP-ribosylation factor 92.9 0.05 1.7E-06 44.1 2.6 24 216-239 29-52 (192)
443 3iev_A GTP-binding protein ERA 92.9 0.065 2.2E-06 47.3 3.5 27 213-239 7-33 (308)
444 2qag_B Septin-6, protein NEDD5 92.9 0.054 1.8E-06 50.0 3.0 20 219-238 45-64 (427)
445 4tmk_A Protein (thymidylate ki 92.9 0.16 5.4E-06 42.2 5.7 23 217-239 4-26 (213)
446 4dkx_A RAS-related protein RAB 92.9 0.059 2E-06 44.9 3.1 22 218-239 15-36 (216)
447 2h17_A ADP-ribosylation factor 92.9 0.057 1.9E-06 43.2 2.9 24 216-239 21-44 (181)
448 1fx0_A ATP synthase alpha chai 92.8 0.09 3.1E-06 49.3 4.5 83 217-305 164-264 (507)
449 2g3y_A GTP-binding protein GEM 92.8 0.059 2E-06 44.7 3.0 23 216-238 37-59 (211)
450 2il1_A RAB12; G-protein, GDP, 92.8 0.052 1.8E-06 44.0 2.6 24 216-239 26-49 (192)
451 2gf0_A GTP-binding protein DI- 92.8 0.087 3E-06 42.5 4.0 24 216-239 8-31 (199)
452 2rcn_A Probable GTPase ENGC; Y 92.7 0.063 2.2E-06 48.4 3.3 23 217-239 216-238 (358)
453 2fv8_A H6, RHO-related GTP-bin 92.7 0.063 2.1E-06 44.0 3.0 23 217-239 26-48 (207)
454 2npi_A Protein CLP1; CLP1-PCF1 92.7 0.051 1.7E-06 50.9 2.7 23 217-239 139-161 (460)
455 2r8r_A Sensor protein; KDPD, P 92.7 0.064 2.2E-06 45.0 3.0 23 217-239 7-29 (228)
456 3k53_A Ferrous iron transport 92.7 0.076 2.6E-06 45.8 3.7 24 216-239 3-26 (271)
457 1zj6_A ADP-ribosylation factor 92.7 0.092 3.1E-06 42.1 4.0 24 216-239 16-39 (187)
458 2atx_A Small GTP binding prote 92.7 0.065 2.2E-06 43.3 3.0 24 216-239 18-41 (194)
459 3f9v_A Minichromosome maintena 92.7 0.039 1.3E-06 53.5 1.9 22 218-239 329-350 (595)
460 3lxx_A GTPase IMAP family memb 92.7 0.081 2.8E-06 44.6 3.7 25 215-239 28-52 (239)
461 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.045 1.6E-06 48.8 2.2 103 217-335 172-274 (330)
462 2hup_A RAS-related protein RAB 92.6 0.066 2.3E-06 43.7 3.0 24 216-239 29-52 (201)
463 4gzl_A RAS-related C3 botulinu 92.6 0.066 2.3E-06 43.8 3.0 24 216-239 30-53 (204)
464 2j0v_A RAC-like GTP-binding pr 92.6 0.067 2.3E-06 43.9 3.0 24 216-239 9-32 (212)
465 3cph_A RAS-related protein SEC 92.6 0.067 2.3E-06 43.8 3.1 24 216-239 20-43 (213)
466 1ypw_A Transitional endoplasmi 92.6 0.068 2.3E-06 53.7 3.6 52 188-239 476-534 (806)
467 3cr8_A Sulfate adenylyltranfer 92.6 0.052 1.8E-06 52.0 2.5 24 216-239 369-392 (552)
468 2gco_A H9, RHO-related GTP-bin 92.6 0.069 2.4E-06 43.5 3.0 23 217-239 26-48 (201)
469 2h57_A ADP-ribosylation factor 92.5 0.054 1.8E-06 43.6 2.3 24 217-240 22-45 (190)
470 3gmt_A Adenylate kinase; ssgci 92.5 0.07 2.4E-06 44.9 3.0 24 216-239 8-31 (230)
471 1jwy_B Dynamin A GTPase domain 92.5 0.14 4.7E-06 45.0 5.2 41 198-239 7-47 (315)
472 3fdi_A Uncharacterized protein 92.5 0.078 2.7E-06 43.6 3.3 23 217-239 7-29 (201)
473 3q3j_B RHO-related GTP-binding 92.5 0.072 2.5E-06 44.1 3.1 24 216-239 27-50 (214)
474 1m8p_A Sulfate adenylyltransfe 92.4 0.16 5.4E-06 48.9 5.8 26 214-239 394-419 (573)
475 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.093 3.2E-06 40.9 3.5 21 217-237 24-44 (149)
476 1bif_A 6-phosphofructo-2-kinas 92.4 0.082 2.8E-06 49.6 3.7 24 216-239 39-62 (469)
477 2fu5_C RAS-related protein RAB 92.4 0.042 1.4E-06 43.8 1.5 24 216-239 8-31 (183)
478 1w36_D RECD, exodeoxyribonucle 92.3 0.21 7.2E-06 48.4 6.6 22 217-238 165-186 (608)
479 2qag_C Septin-7; cell cycle, c 92.3 0.066 2.3E-06 49.4 2.9 21 219-239 34-54 (418)
480 2f7s_A C25KG, RAS-related prot 92.3 0.076 2.6E-06 43.8 3.0 24 216-239 25-48 (217)
481 3ozx_A RNAse L inhibitor; ATP 92.3 0.095 3.3E-06 50.0 4.0 24 215-238 24-47 (538)
482 3euj_A Chromosome partition pr 92.2 0.077 2.6E-06 49.8 3.3 22 217-238 30-51 (483)
483 3ozx_A RNAse L inhibitor; ATP 92.2 0.07 2.4E-06 51.0 3.0 23 217-239 295-317 (538)
484 1yqt_A RNAse L inhibitor; ATP- 92.2 0.075 2.6E-06 50.8 3.3 23 217-239 313-335 (538)
485 3ch4_B Pmkase, phosphomevalona 92.2 0.12 4E-06 42.5 4.0 24 215-238 10-33 (202)
486 2dpy_A FLII, flagellum-specifi 92.2 0.078 2.7E-06 49.3 3.3 24 216-239 157-180 (438)
487 1yqt_A RNAse L inhibitor; ATP- 92.2 0.077 2.6E-06 50.7 3.3 22 217-238 48-69 (538)
488 4akg_A Glutathione S-transfera 92.1 0.44 1.5E-05 53.8 9.4 80 217-307 1268-1347(2695)
489 1zcb_A G alpha I/13; GTP-bindi 92.1 0.1 3.4E-06 47.2 3.7 23 214-236 31-53 (362)
490 1g8f_A Sulfate adenylyltransfe 92.0 0.09 3.1E-06 49.8 3.4 45 191-239 374-418 (511)
491 3v9p_A DTMP kinase, thymidylat 92.0 0.075 2.6E-06 44.7 2.6 24 216-239 25-48 (227)
492 1x6v_B Bifunctional 3'-phospho 92.0 0.11 3.8E-06 50.3 4.1 25 215-239 51-75 (630)
493 1h65_A Chloroplast outer envel 92.0 0.21 7.3E-06 42.9 5.6 25 215-239 38-62 (270)
494 2j9r_A Thymidine kinase; TK1, 91.9 0.18 6.1E-06 41.8 4.8 109 216-335 28-137 (214)
495 3def_A T7I23.11 protein; chlor 91.8 0.22 7.7E-06 42.6 5.6 25 215-239 35-59 (262)
496 3oaa_A ATP synthase subunit al 91.8 0.7 2.4E-05 43.3 9.1 94 201-305 152-263 (513)
497 2x77_A ADP-ribosylation factor 91.8 0.061 2.1E-06 43.2 1.9 24 216-239 22-45 (189)
498 1ny5_A Transcriptional regulat 91.8 0.41 1.4E-05 43.6 7.6 46 190-239 138-183 (387)
499 3bk7_A ABC transporter ATP-bin 91.8 0.09 3.1E-06 51.0 3.3 23 217-239 383-405 (607)
500 2xtp_A GTPase IMAP family memb 91.8 0.12 4.1E-06 44.1 3.7 25 215-239 21-45 (260)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=1.1e-24 Score=211.51 Aligned_cols=134 Identities=25% Similarity=0.337 Sum_probs=111.3
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh--cccccccccceEEEEeCCCC--CHHHHHHHH
Q 043252 192 YGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN--DKQVEDHFDLKAWTCVSDDF--DVIRLTKSI 267 (337)
Q Consensus 192 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i 267 (337)
|||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997542 23579999999999999999999998 67899999999999999985 889999999
Q ss_pred HHHhhCCCC------CCCCCHHHHHHHHHHHcCCC-eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 268 LLSIASDQN------VDNHDLNKLQEELKKQLFGK-KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 268 l~~~~~~~~------~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
+.++..... ....+...+...+++.|.++ ||||||||||+.....|.. .+||+||||||++
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~ 275 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDV 275 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCH
Confidence 999976521 02335677899999999996 9999999999863223432 2699999999985
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=6.3e-21 Score=190.93 Aligned_cols=132 Identities=23% Similarity=0.217 Sum_probs=105.6
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccc-eEEEEeCCCCCHHHHHHHHHH
Q 043252 191 VYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDL-KAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 191 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~il~ 269 (337)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.++..+|+. ++|+++++.++...++..|+.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999998532 3679999999999999999999998888999997 899999999998888888877
Q ss_pred HhhCCC---CCC-------CCCHHHHHHHHHHHc---CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 270 SIASDQ---NVD-------NHDLNKLQEELKKQL---FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 270 ~~~~~~---~~~-------~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.+.... ... ..+.+.+...+++.| .++||||||||+|+. +.|..+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543211 101 113455667777766 789999999999984 667654 2 689999999985
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=2.8e-20 Score=196.22 Aligned_cols=138 Identities=22% Similarity=0.364 Sum_probs=107.5
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc-cccc-cceEEEEeCCCCC--HH
Q 043252 186 VEEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-EDHF-DLKAWTCVSDDFD--VI 261 (337)
Q Consensus 186 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~--~~ 261 (337)
.....||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 35789999999999999999999987543 4555 5677999998544 34
Q ss_pred HHHHHHHHHhhCCCC---CCCCCHHHHHHHHHHHcCCC--eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 262 RLTKSILLSIASDQN---VDNHDLNKLQEELKKQLFGK--KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 262 ~~~~~il~~~~~~~~---~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
..+..++..+..... ....+.+.+.+.++..|.++ ||||||||+|+. ..|..+ .+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 456677777765432 13467888999999999877 999999999975 444432 5689999999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=170.94 Aligned_cols=135 Identities=25% Similarity=0.372 Sum_probs=100.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccc-ccccc-ceEEEEeCCCCCHHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-EDHFD-LKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~~~~ 265 (337)
...||||+.+++.|.++|.... ...++|+|+||||+||||||+.+|++.++ ..+|. .++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997532 34689999999999999999999987655 78894 7999999875 3444444
Q ss_pred HH---HHHhhCCC---CCCCCCHHHHHHHHHHHcCC--CeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 266 SI---LLSIASDQ---NVDNHDLNKLQEELKKQLFG--KKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 266 ~i---l~~~~~~~---~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.+ +..+.... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+||+||||||+.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCc
Confidence 44 33443211 11345677888888888865 7899999999874 3332 23 4689999999975
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.77 E-value=4.7e-19 Score=134.97 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 043252 12 SVELLVNKLASEGIRLFARQGRIKDDLVKWKKKLVTIKAVLDDAEEK--KTTDDSVKLWLGELQNLAYDVEDLLDEFQTE 89 (337)
Q Consensus 12 ~~~~l~~kl~s~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~ 89 (337)
+++.+++||++.+.+|+.++.||++++++|+++|++|++||.+|+.+ +..++.++.|+++||++|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999987 5689999999999999999999999999987
Q ss_pred H
Q 043252 90 A 90 (337)
Q Consensus 90 ~ 90 (337)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=2.2e-12 Score=120.25 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=96.0
Q ss_pred cccccchhHHHHHHHHH-hcCCCCCCCCcEEEEE--EccCCCchHHHHHHHHhccccc---cccc-ceEEEEeCCCCCHH
Q 043252 189 AKVYGRETEKKEIVELL-LKDDSRNDGGFSVIPI--IGMGGLGKTTLAQLVYNDKQVE---DHFD-LKAWTCVSDDFDVI 261 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~~ 261 (337)
..++||+.+++.|..+| .............+.| +|++|+|||||++.+++..... ..|. ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999998 4211000012346666 9999999999999999753211 0122 35788877777888
Q ss_pred HHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCCC------hhcHHHhhccCCCC---C--CCcE
Q 043252 262 RLTKSILLSIASDQNVDNHDLNKLQEELKKQLF--GKKFLLVLDDVWNEN------YTDWVHLSLPFQAG---A--QGSK 328 (337)
Q Consensus 262 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~ 328 (337)
.++..++.+++........+...+...+.+.+. +++++|||||++... ...+..+...+... . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999865433223445666677777764 779999999997631 23343333333211 1 3345
Q ss_pred EEEEecC
Q 043252 329 IIVTTRN 335 (337)
Q Consensus 329 iivTTR~ 335 (337)
||+||+.
T Consensus 182 lI~~~~~ 188 (412)
T 1w5s_A 182 FLLVASD 188 (412)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 7878864
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.4e-11 Score=113.64 Aligned_cols=146 Identities=11% Similarity=0.047 Sum_probs=97.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccc----cc--ccceEEEEeCCCC-CHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVE----DH--FDLKAWTCVSDDF-DVI 261 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~ 261 (337)
..++||+.+++.+..+|..... ......+.|+|++|+||||||+.+++...-. .. ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864211 1234589999999999999999998752111 11 2346788877777 888
Q ss_pred HHHHHHHHHhhCCCC-CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhc-HHHhhccCCCCCCCcEEEEEecCC
Q 043252 262 RLTKSILLSIASDQN-VDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTD-WVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 262 ~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.++..++..+..... ....+...+...+.+.+..++.+|||||++...... .+.+...|.....+..||+||+..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 899999988854322 123445667778888887777799999996532111 112011121111567888888753
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=1e-10 Score=108.00 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=101.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++||+.+++.|..++...........+.+.|+|++|+|||||++.+++....... ...+|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 679999999999999986521001112348999999999999999999875321111 2457788778788889999999
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhcHHHhhccCCCCC----CCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLF--GKKFLLVLDDVWNENYTDWVHLSLPFQAGA----QGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTTR~ 335 (337)
..++........+...+...+...+. +++.+||||+++..+......+...+.... .+..||+||+.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 98865433233456666666666663 668899999998765555666655553211 35678888764
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.20 E-value=7.2e-11 Score=108.77 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=87.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccc----ccccceEEEEeCCCCCHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVE----DHFDLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~ 264 (337)
..++||+.+++.+..+|...- .......+.|+|++|+||||||+.+++..... ..-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999999999999985431 12235688999999999999999998753111 001235788888888889999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHc--CCCeEEEEEeCCCCC
Q 043252 265 KSILLSIASDQNVDNHDLNKLQEELKKQL--FGKKFLLVLDDVWNE 308 (337)
Q Consensus 265 ~~il~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 308 (337)
..++.+++........+...+...+.+.+ .+++.+||||+++..
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 99999986654433445667777777777 456889999999753
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.17 E-value=5.3e-11 Score=108.13 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=87.3
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC------CH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF------DV 260 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~ 260 (337)
....|+||+.+++.|.+++... +++.|+|++|+|||||++.+++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3467999999999999998642 499999999999999999998752 1 6777765432 55
Q ss_pred HHHHHHHHHHhhC-----------------CCCCCCCCHHHHHHHHHHHcCC-CeEEEEEeCCCCCCh-------hcHHH
Q 043252 261 IRLTKSILLSIAS-----------------DQNVDNHDLNKLQEELKKQLFG-KKFLLVLDDVWNENY-------TDWVH 315 (337)
Q Consensus 261 ~~~~~~il~~~~~-----------------~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~-------~~~~~ 315 (337)
..++..+...+.. .......+...+...+.+.+.. ++++|||||++.... ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665432 0000124566666667666542 389999999976321 22333
Q ss_pred hhccCCCCCCCcEEEEEecC
Q 043252 316 LSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 316 l~~~l~~~~~gs~iivTTR~ 335 (337)
+...+.. ..+.++|+|++.
T Consensus 155 L~~~~~~-~~~~~~il~g~~ 173 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSE 173 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESS
T ss_pred HHHHHHh-cCCeEEEEECCc
Confidence 3322222 246788888764
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.11 E-value=8.2e-11 Score=108.28 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=93.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc---cceEEEEeCCCCCHHHHH
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF---DLKAWTCVSDDFDVIRLT 264 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~ 264 (337)
+..++||+.+++.|.+++...-. ......+.|+|++|+|||||++.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999999874210 123458899999999999999999875 22222 245778877767777888
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHcC--CCeEEEEEeCCCCCC----hhcHHHhhccCCC-CCCCcEEEEEecC
Q 043252 265 KSILLSIASDQNVDNHDLNKLQEELKKQLF--GKKFLLVLDDVWNEN----YTDWVHLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 265 ~~il~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTTR~ 335 (337)
..++..++........+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 888877754432223345666666666663 458999999996521 2233334332211 1234567777764
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.05 E-value=8.5e-10 Score=100.32 Aligned_cols=133 Identities=13% Similarity=0.152 Sum_probs=82.4
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-----CCHH
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-----FDVI 261 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~ 261 (337)
....|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+++... . ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 34679999999999999 732 4999999999999999999987532 1 2578887643 3445
Q ss_pred HHHHHHHHHhhC-------------CC-----CC----------CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCCh---
Q 043252 262 RLTKSILLSIAS-------------DQ-----NV----------DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENY--- 310 (337)
Q Consensus 262 ~~~~~il~~~~~-------------~~-----~~----------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--- 310 (337)
.++..+...+.. .. +. .......+...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555554443311 00 00 12345566666655433 499999999965321
Q ss_pred hcHHHhhccCCCCCCCcEEEEEecC
Q 043252 311 TDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 311 ~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..|..+...+.+...+.++|+|++.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~ 179 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSE 179 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCc
Confidence 2222222222222236789999875
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.01 E-value=1.8e-09 Score=92.31 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=76.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++||+..++.|..++.... ....+.|+|++|+||||||+.+++.......+... ....... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHh
Confidence 468999999999999997543 23488999999999999999998753211111000 0000000 00000
Q ss_pred HHhhCC----CCCCCCCHHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASD----QNVDNHDLNKLQEELKKQL-----FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
...... ..........+. .+.+.+ .+++.+|||||++..+...+..+...+.....+..+|+||+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 000000 000001111121 222221 356899999999876666777777766655567888888864
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.00 E-value=3.1e-09 Score=89.66 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+.. .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH-K 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH-H
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH-H
Confidence 468999999999999997543 22489999999999999999987421 11121 233344444333322222 2
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+..+..... ...+++.+|||||++......+..+...+.....+.++|+||+.
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 222111100 01257889999999876555666666666554567788888864
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=9.8e-09 Score=92.08 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=78.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|++..++.|..++.... ...+.|+|++|+||||+|+.+++... ...+. ..++++.+...... .+.++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 568999999999999997543 22389999999999999999987521 11111 23444444332322 22223
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQL-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+..+..... .+ .+++.+|||||++......+..+...+.....++++|+||..
T Consensus 93 ~~~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 93 IKHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp HHHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 322221000 11 356889999999876556666676666555567788888854
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.3e-08 Score=89.34 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=80.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc------cccceEEEEeCCCCCHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED------HFDLKAWTCVSDDFDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~v~~~~~~~~ 262 (337)
..+.||++|+++|...|...- .......+.|+|++|+|||++++.|++...... .| ..+++++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 348899999999988876432 123456889999999999999999998632111 12 356777777788889
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHH--cCCCeEEEEEeCCCCC
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQ--LFGKKFLLVLDDVWNE 308 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~ 308 (337)
++..|++++.+...........+...+... -.++.++|+||++..-
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 999999999765432233344444444432 2467899999999764
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=4.5e-08 Score=80.41 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=38.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+++++.+.+++.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996532 346789999999999999999874
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=4.8e-08 Score=87.70 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=75.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccc-cceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF-DLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|++..++.|..++.... ...+.|+|++|+||||+|+.+++.... ..+ ...+.+..+..... ..+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCch-HHHHHH
Confidence 458999999999999987543 234899999999999999999875211 111 12233333321111 111111
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+..+....+ ...+++.+||+||++......+..+...+.....++++|+||..
T Consensus 97 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 97 VKEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp HHHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 111110000 11256889999999876666677777666555567788888754
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.45 E-value=5.6e-07 Score=80.31 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=74.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|++..++.|.+++.... ...+.++|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 458999999999988885432 23489999999999999999987421 11111 123333333111
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHH--c-CCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQ--L-FGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..........+... + .+++.+||||++..........+...+.....++++|+||..
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 11111111111111 1 256889999999776556667777777655567788888754
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.42 E-value=9.2e-07 Score=80.84 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=75.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|++..++.|...+.... ....+.|+|++|+||||+|+.+.+.......+.. .++........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 358999999999999997543 2347889999999999999999864321111100 0000000001111
Q ss_pred HH-------hhCCCCCCCCCHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LS-------IASDQNVDNHDLNKLQEELKKQ-LFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~-------~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.. +.............+...+... ..+++.+|||||+...+...++.+...+.....+..+|++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 00 0000000122333333322211 1356789999999776656677777666554556777777753
No 21
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.36 E-value=5.1e-07 Score=73.76 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=38.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|++.+++.+.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996532 346789999999999999999874
No 22
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=1.1e-06 Score=71.99 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhC
Q 043252 194 RETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIAS 273 (337)
Q Consensus 194 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~ 273 (337)
.+..++.+.+++.+-.. .....+.|+|++|+|||||++.+++.......+ ..+++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 44555566666544321 124589999999999999999998753211122 12333 344555555544433
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHH--HhhccCCCC-CCCcEEEEEecC
Q 043252 274 DQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWV--HLSLPFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 335 (337)
... . .....+. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~---~---~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD---T---KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC---S---HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH---H---HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1 2222221 4568999999843223333 233323211 246678888864
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.34 E-value=1.8e-06 Score=68.12 Aligned_cols=113 Identities=15% Similarity=0.046 Sum_probs=67.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccc-ccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
.++|+...+.++.+.+..-.. ...-|.|+|++|+|||++|+.+++... ....| + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 478999999998888754221 122478999999999999999987421 12222 2 555543221
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..... .+... +.-.|+||++..........+...+.......+||.||..
T Consensus 66 -----------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -----------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 2347899999877655556666555444445678888753
No 24
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.29 E-value=1.2e-06 Score=72.97 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCC
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQ 275 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~ 275 (337)
..++.+..++..... ......+.|+|++|+|||+||+.+++.. .......+|++++ .+...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345566666654421 1112588999999999999999999753 2222345566543 344444332211
Q ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHH--hhc-cCCCC-CCCcEEEEEecC
Q 043252 276 NVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVH--LSL-PFQAG-AQGSKIIVTTRN 335 (337)
Q Consensus 276 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTTR~ 335 (337)
.....+...+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 122333333322 2399999997643333321 221 12111 235578888864
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.7e-06 Score=78.38 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=75.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|++..++.|..++.... ...+.|+|++|+||||+|+.+.+.......+. ....++.+....... +.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 468999999999999986442 22389999999999999999987521111121 123344443323322 2222
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
+..+........... .....-.++.-+|++|++..........+...+.......++|++|.
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 222221111011000 00111124556999999976655555666666554445567777764
No 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.25 E-value=3e-06 Score=76.09 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=73.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
..++|.+..++.|..++.... ...++.+.|++|+|||++|+.+.+.. .. ..+.++.+. .. ...+..++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~~---~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--NA---DMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--TE---EEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--CC---CEEEEcccc-cC-HHHHHHHH
Confidence 568999999999999997543 23578889999999999999998752 11 233444333 22 22222222
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCC-hhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNEN-YTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
..+..... ..+++-+|+|||+.... ......|...+.......++|+||..
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 22211110 12467899999997754 44555555555433345678887754
No 27
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.18 E-value=1.4e-06 Score=78.10 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=37.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999988888753110 0112347889999999999999999874
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.16 E-value=7e-06 Score=72.99 Aligned_cols=128 Identities=17% Similarity=0.100 Sum_probs=67.9
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCH
Q 043252 190 KVYGRETEKKEIVELLLKDD---------SRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDV 260 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 260 (337)
.++|.+..++.|.+++.... .........+.|+|++|+|||+||+.+.+...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888776654210 001223457899999999999999988764221111111123333211
Q ss_pred HHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCC---------ChhcHHHhhccCCCCCCCcEEEE
Q 043252 261 IRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNE---------NYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 261 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
.+.... .......+...+... +..+|+||++... .......|...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 010000 111112222223222 3459999999732 33444556655555455667777
Q ss_pred Eec
Q 043252 332 TTR 334 (337)
Q Consensus 332 TTR 334 (337)
||.
T Consensus 175 ~~~ 177 (309)
T 3syl_A 175 AGY 177 (309)
T ss_dssp EEC
T ss_pred eCC
Confidence 774
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=2.6e-06 Score=74.98 Aligned_cols=52 Identities=27% Similarity=0.205 Sum_probs=38.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSR-------NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|.+..++.|.+.+...-.. +-.....+.|+|++|+|||+||+.+++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999998887432000 0012356899999999999999999875
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.11 E-value=1.7e-06 Score=68.14 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
-.++|++..+.++.+.+..... ...-|.|+|..|+|||++|+.+++... -++.+.-..-....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh-----
Confidence 3578999888888887753211 112478999999999999999987422 22222211100110
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCC-CCCcEEEEEec
Q 043252 269 LSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAG-AQGSKIIVTTR 334 (337)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR 334 (337)
...+.+.. +.-.|+||++..........+...+... ..+.+||.||.
T Consensus 67 -----------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 -----------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp -----------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred -----------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 11111111 2347899999876655555555544432 23467887775
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1e-05 Score=73.38 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=34.8
Q ss_pred cccccchhHHHHHHHHH-hcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 189 AKVYGRETEKKEIVELL-LKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++|.+...+.+..++ .... ... +.|+|+.|+||||+++.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence 45889998888888877 3222 223 89999999999999998876
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.05 E-value=1.1e-05 Score=69.70 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=35.2
Q ss_pred cccccchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLL---KDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+..++.|.+++. .+.. .+......+.|+|++|+|||+||+.+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 568899888777755542 2211 00123456889999999999999999874
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.01 E-value=1.3e-06 Score=74.41 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=38.4
Q ss_pred cccccc---hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC
Q 043252 189 AKVYGR---ETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD 256 (337)
Q Consensus 189 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 256 (337)
..++|. +..++.+..++... ....+.|+|++|+||||||+.+++... .......|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHH
Confidence 346653 35556666666432 235889999999999999999987522 2223456666544
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.5e-05 Score=71.99 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=68.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhccccccccc-ceEEEEeCCCCCHHHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD-LKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 267 (337)
..++|.+..++.|..++.... +..+.++|+.|+||||+|+.+..... ...+. ...-++.+....... .+++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHHH
Confidence 457898888888888886433 22388999999999999999987421 11111 112222222222221 1122
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 268 LLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
+..+..... .+.+.+-++|+|++........+.|...+......+++|++|.
T Consensus 97 i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n 148 (340)
T 1sxj_C 97 IKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLAN 148 (340)
T ss_dssp HHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred HHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 222110000 0123467889999866554555666555544344566776653
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.99 E-value=2.2e-05 Score=71.60 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=36.2
Q ss_pred ccccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKE---IVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|++..++. +...+..... ....+.|+|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999988766 4555543321 2368999999999999999999875
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.98 E-value=1.7e-05 Score=71.45 Aligned_cols=50 Identities=28% Similarity=0.404 Sum_probs=38.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5699999999999888864311 0123456899999999999999999764
No 37
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.97 E-value=3.1e-05 Score=65.01 Aligned_cols=87 Identities=21% Similarity=0.100 Sum_probs=53.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhh-----------CCCCCCCCCHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIA-----------SDQNVDNHDLNK 284 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~-----------~~~~~~~~~~~~ 284 (337)
-.++.|+|++|+|||||+..+.. ..-..++|+.....++...+.. +...+. ............
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35999999999999999999876 1123577887776556655443 332221 111112222234
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCC
Q 043252 285 LQEELKKQLFGKKFLLVLDDVWNE 308 (337)
Q Consensus 285 ~~~~l~~~L~~kr~LlVlDdv~~~ 308 (337)
....++..+..+.-+||||.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 555666666545679999998653
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.95 E-value=3e-05 Score=72.75 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=59.0
Q ss_pred cccccchhHH---HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC-CCHHHHH
Q 043252 189 AKVYGRETEK---KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD-FDVIRLT 264 (337)
Q Consensus 189 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~ 264 (337)
..++|.+..+ ..|...+.... ...+.|+|++|+||||||+.+.+. ....| +.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4688988877 67777775433 468999999999999999999875 22222 222221 12221 1
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCC
Q 043252 265 KSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQA 322 (337)
Q Consensus 265 ~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 322 (337)
..++... ......+++.+|+||++........+.|...+..
T Consensus 92 r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~ 132 (447)
T 3pvs_A 92 REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 (447)
T ss_dssp HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT
T ss_pred HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc
Confidence 1111111 0111146788999999977654455555555543
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=3.6e-05 Score=72.15 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=59.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccccccc--ceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFD--LKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
...+.|+|++|+||||||+.+++. ....|. ..++++. ..+..++...+... ... .+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~------~~~----~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLN----EFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT------CHH----HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc------cHH----HHHHHh
Confidence 567899999999999999999874 222221 2344443 33444555554322 111 233444
Q ss_pred CCCeEEEEEeCCCCCCh--hcHHHhhccCCC-CCCCcEEEEEecC
Q 043252 294 FGKKFLLVLDDVWNENY--TDWVHLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 294 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~ 335 (337)
..+.-+|+|||+..... .....+...+.. ...|..||+||.+
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 43667999999965422 222334333321 1346788888875
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=2.6e-05 Score=74.67 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=71.9
Q ss_pred cccccchhHHHHHHHHHhcCC-----------CCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCC
Q 043252 189 AKVYGRETEKKEIVELLLKDD-----------SRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDD 257 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 257 (337)
..++|++..++.|..||.... ....+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 568999999999999997511 0001234689999999999999999998753 11 2334555544
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCCh---hcHHHhhccCCCCCCCcEEEEEec
Q 043252 258 FDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENY---TDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 258 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
... .++...+........ ...-...... .....+++.+|+||++..... ..+..+...+.. .+..||+++.
T Consensus 114 ~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chH-HHHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 333 233333322211110 0000000000 001235788999999965422 223444443332 2334666554
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=3.7e-05 Score=68.24 Aligned_cols=123 Identities=11% Similarity=0.181 Sum_probs=66.8
Q ss_pred ccccchhHHHHHHHHHhcCC---CCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHH
Q 043252 190 KVYGRETEKKEIVELLLKDD---SRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKS 266 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 266 (337)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.++... ...-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 47899888888877776421 0012234689999999999999999998742 1111123455554432211 1111
Q ss_pred HHHHhhCCCCC-CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCC
Q 043252 267 ILLSIASDQNV-DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQ 321 (337)
Q Consensus 267 il~~~~~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 321 (337)
++ +..... .......+...+.. ...-+|+||++..........|...+.
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred hc---CCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 11 111100 11111222222222 234699999997766666666655543
No 42
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=7e-05 Score=66.54 Aligned_cols=119 Identities=8% Similarity=-0.019 Sum_probs=72.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcc-cccccccceEEEEeCC-CCCHHHHHHHHHHH
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-QVEDHFDLKAWTCVSD-DFDVIRLTKSILLS 270 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~ 270 (337)
|-++-++.|...+... ..+...++|+.|+||||+|+.+.+.. .....+....++..++ ...+.. .++++..
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455566777777532 25689999999999999999997631 1111122234454432 233332 3344444
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 271 IASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+..... .+++-++|+|++........+.|...+....+.+.+|++|.+
T Consensus 74 ~~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 74 LNYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp HTSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred Hhhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 432111 245678999999877667778888877766667888887743
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.83 E-value=4.5e-05 Score=68.39 Aligned_cols=52 Identities=29% Similarity=0.279 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKD----D--SRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|.+..++.|.+.+..+ . .......+.+.|+|++|+|||+||+.+++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999998877311 0 001223467999999999999999999875
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.82 E-value=3.7e-05 Score=67.07 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHH-------HHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVE-------LLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|.....+++.. .+.... ......+.|+|++|+|||+||+.+++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46777666665555 333221 234678999999999999999999875
No 45
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.80 E-value=0.00017 Score=64.96 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccc--------------------cccceEEEEe
Q 043252 195 ETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVED--------------------HFDLKAWTCV 254 (337)
Q Consensus 195 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 254 (337)
++..+.+...+.... -...+.++|+.|+|||++|+.+.+.-.... |++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455667777775433 245799999999999999998876421110 111 122222
Q ss_pred C---CCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEE
Q 043252 255 S---DDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIV 331 (337)
Q Consensus 255 ~---~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 331 (337)
. ....+.. .+++.+.+.... ..+++-++|+|++........+.|...+.....++.+|+
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cccCCCCCHHH-HHHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 1 1111111 122222221110 125677999999987665666777777766556677777
Q ss_pred EecC
Q 043252 332 TTRN 335 (337)
Q Consensus 332 TTR~ 335 (337)
+|.+
T Consensus 144 ~t~~ 147 (334)
T 1a5t_A 144 ATRE 147 (334)
T ss_dssp EESC
T ss_pred EeCC
Confidence 7754
No 46
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.80 E-value=0.00043 Score=61.98 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=37.8
Q ss_pred ccccccchhHHHHHHHHHhc----CCC--CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLK----DDS--RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|.+..++.|.+.+.. +.. ......+.|.|+|++|+|||+||+.+++.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 35689999888888776632 110 01123468899999999999999999975
No 47
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.79 E-value=3.1e-05 Score=67.30 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=33.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..+..+.+.+..-.. ....+.|+|..|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3578999988888777654221 1236789999999999999999874
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.79 E-value=7.7e-05 Score=66.80 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV 277 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~ 277 (337)
...+..++..+. .....+.|+|++|+||||||+.+++..... .+ ..+++++ ..+...+...+...
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~--- 87 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG--- 87 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC---
Confidence 344555554332 134578999999999999999998752111 11 2344443 33344444444221
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCCh--hcHHHhhccCCC-CCCCcEEEEEecC
Q 043252 278 DNHDLNKLQEELKKQLFGKKFLLVLDDVWNENY--TDWVHLSLPFQA-GAQGSKIIVTTRN 335 (337)
Q Consensus 278 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~ 335 (337)
..... ...+ .+.-+|+|||+..... .....+...+.. ...|..||+||.+
T Consensus 88 ---~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 ---TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp ---CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ---cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 12222 2222 2356999999965422 122333333321 1235678888753
No 49
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.77 E-value=1.4e-05 Score=63.32 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.|+|+.|+|||||++.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 50
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.73 E-value=6.9e-05 Score=66.60 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=36.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|+...+..+.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4588999999988888764321 1235789999999999999999874
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=0.00037 Score=69.81 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.+++.+++.|.... ..-+.|+|++|+|||++|+.+...
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999996542 345789999999999999999864
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.64 E-value=0.00034 Score=65.57 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=38.3
Q ss_pred ccccccchhHHHHHHHHHhc----CCC--CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLK----DDS--RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|.+..++.|.+.+.. +.. ......+.|.|+|++|+|||+||+.+++.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999988887631 110 00123468899999999999999999975
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.64 E-value=0.00015 Score=68.54 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.+++.++..|.... ..-+.|+|++|+|||+||+.++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997533 235679999999999999999874
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.61 E-value=0.00012 Score=74.38 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.++..++..|.... ...+.++|++|+||||||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997543 234689999999999999999874
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.61 E-value=0.00013 Score=66.25 Aligned_cols=51 Identities=29% Similarity=0.312 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKD----D--SRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999888876321 0 001122346889999999999999999985
No 56
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.58 E-value=5.5e-05 Score=67.15 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=46.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEe--CCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCV--SDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQL 293 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L 293 (337)
.+++.|+|++|+||||||..+... .-..++|+++ .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 357789999999999999998764 1123456766 332110 0134566666666666
Q ss_pred CCCeEEEEEeCCCC
Q 043252 294 FGKKFLLVLDDVWN 307 (337)
Q Consensus 294 ~~kr~LlVlDdv~~ 307 (337)
...+ +||||++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999964
No 57
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00013 Score=66.45 Aligned_cols=51 Identities=25% Similarity=0.297 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhc----CCC--CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLK----DDS--RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.|.+.+.. +.. ......+.+.|+|++|+|||+||+.+++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999988887642 110 00123457899999999999999999874
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=0.00028 Score=62.12 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.|.+++..+.. .-......+.|+|++|+||||||+.+++.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999998887743100 00112457899999999999999999874
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00026 Score=71.00 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=37.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++||+.+++.+...|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997543 234789999999999999999864
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=0.00033 Score=60.35 Aligned_cols=52 Identities=29% Similarity=0.324 Sum_probs=34.6
Q ss_pred ccccccchhHHHHHHHH---HhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVEL---LLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|.+..++.+.+. +..+.. -+.....-+.|+|++|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35689998777766554 332210 00112335889999999999999999874
No 61
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00059 Score=60.40 Aligned_cols=51 Identities=27% Similarity=0.251 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+..++.|.+++..+-. -+-.....+.|+|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4689999888888877643100 00123457899999999999999999975
No 62
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.45 E-value=0.0001 Score=65.57 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 195 ETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 195 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++.+.+++..... .....+.|+|+.|+|||+||+.+++.
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445556667654321 12357889999999999999999875
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.40 E-value=0.00022 Score=67.59 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..+++|.+++...-. -+.....-+.|+|++|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999998887753200 00112346899999999999999999874
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00016 Score=72.38 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=72.0
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.. ...-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 4689999999888888764321 112334579999999999999999998742 1111223445544322100
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCC-----------CCCcEEEEEec
Q 043252 266 SILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAG-----------AQGSKIIVTTR 334 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTR 334 (337)
......+...++. ....+|+||++..........|...+..+ ....+||.||.
T Consensus 565 -------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0001111222222 23348999999877666666666555331 12457888875
No 65
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.34 E-value=0.00073 Score=62.07 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKD----DS--RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|.+..++.|..++... .. ........+.|+|++|+|||+||+.+++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999998887321 10 00112457899999999999999999874
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.30 E-value=0.00049 Score=60.69 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999985
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.27 E-value=0.0003 Score=71.45 Aligned_cols=136 Identities=14% Similarity=0.221 Sum_probs=72.3
Q ss_pred cccccchhHHHHHHHHHhcCC---CCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDD---SRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+.... ...+.....+.|+|+.|+|||++|+.+.+... ..-...+.++++...... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H--
Confidence 357999998888887775421 00122346899999999999999999987421 101123344444322210 0
Q ss_pred HHHHHhhCCCC--CCCCCHHHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCC-----------CCcEEEEE
Q 043252 266 SILLSIASDQN--VDNHDLNKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGA-----------QGSKIIVT 332 (337)
Q Consensus 266 ~il~~~~~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 332 (337)
...+.+..+ ........+...++. ...-+|+||++...+......|...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 011111000 000111223333332 224589999998776666667766665331 23447777
Q ss_pred ec
Q 043252 333 TR 334 (337)
Q Consensus 333 TR 334 (337)
|.
T Consensus 708 sn 709 (854)
T 1qvr_A 708 SN 709 (854)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00076 Score=62.63 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=38.0
Q ss_pred cccccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLK----DDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-.++.|.++.+++|.+.+.- ++. -+-...+-|.++|++|.|||+||+.+.+.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345688998888877665532 110 01234578999999999999999999985
No 69
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.0015 Score=58.89 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=56.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCC-----------CCCC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQ-----------NVDN 279 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~-----------~~~~ 279 (337)
.-.++.|+|++|+||||||..+........ .-..++|++....++...+.. ++..++... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 456999999999999999988876422211 123678999888888776543 334433211 1012
Q ss_pred CCHHHHHHHHHHHcC---CCeEEEEEeCCCC
Q 043252 280 HDLNKLQEELKKQLF---GKKFLLVLDDVWN 307 (337)
Q Consensus 280 ~~~~~~~~~l~~~L~---~kr~LlVlDdv~~ 307 (337)
.....+...+...+. .+--|||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 222234444455543 4566999999843
No 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.16 E-value=0.0011 Score=63.56 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=35.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.++-.+.+.+.+.-...........+.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457888877777655443111001113568999999999999999999874
No 71
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00049 Score=63.04 Aligned_cols=53 Identities=26% Similarity=0.185 Sum_probs=37.5
Q ss_pred cccccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLK----DDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-.++.|.++.+++|.+.+.- ++. -+-...+-|.++|++|.|||.||+.+.+.
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 345688998888877665432 110 01223567899999999999999999985
No 72
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.14 E-value=0.0015 Score=59.31 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=55.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~~ 291 (337)
-.++.|.|.+|+||||||..+..... ..=..++|++....++... ...++.+.. ....+.+++.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 35889999999999999988765421 1123688999888776541 334432211 023456777777776
Q ss_pred HcCC-CeEEEEEeCCCC
Q 043252 292 QLFG-KKFLLVLDDVWN 307 (337)
Q Consensus 292 ~L~~-kr~LlVlDdv~~ 307 (337)
.++. .--+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6653 344999999843
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00077 Score=62.47 Aligned_cols=53 Identities=30% Similarity=0.251 Sum_probs=38.5
Q ss_pred cccccccchhHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLK----DD---SRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-.++.|.++.++.|.+.+.- ++ .-+-...+-|.++|++|+|||+||+.+.+.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345788999888888776532 10 001234567999999999999999999985
No 74
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.11 E-value=0.0015 Score=59.01 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=55.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~ 290 (337)
.-.++.|+|++|+|||||+..+...... .=..++|++....++.. .++.++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3469999999999999999988764221 11246788877777654 3344433211 13345666666666
Q ss_pred HHcC-CCeEEEEEeCCCC
Q 043252 291 KQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 291 ~~L~-~kr~LlVlDdv~~ 307 (337)
..+. .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4455899999854
No 75
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.10 E-value=0.0016 Score=58.87 Aligned_cols=85 Identities=20% Similarity=0.127 Sum_probs=54.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~~ 291 (337)
-.++.|+|++|+||||||..+..... ..=..++|++....++.. ..+.++.... ....+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 45999999999999999988875421 111357889888777653 2333432211 023356666666655
Q ss_pred HcCC-CeEEEEEeCCCC
Q 043252 292 QLFG-KKFLLVLDDVWN 307 (337)
Q Consensus 292 ~L~~-kr~LlVlDdv~~ 307 (337)
.... +--+||+|.+-.
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 5543 455999999854
No 76
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.10 E-value=0.0021 Score=53.98 Aligned_cols=114 Identities=16% Similarity=0.056 Sum_probs=60.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------------------
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN-------------------- 276 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~-------------------- 276 (337)
.++.|+|++|+|||||++.+...... .=..+.|+.... ....+...+. .+.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999998753211 112355555433 3444443332 2221100
Q ss_pred --CCCCCHHHHHHHHHHHc---CCCeEEEEEeCCCCC---ChhcHHHhhccCCC--CCCCcEEEEEecC
Q 043252 277 --VDNHDLNKLQEELKKQL---FGKKFLLVLDDVWNE---NYTDWVHLSLPFQA--GAQGSKIIVTTRN 335 (337)
Q Consensus 277 --~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTR~ 335 (337)
....+..++...+...+ .-+..+||||.+... +......+...|.. ...|..||+||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 01114555555555544 223459999998632 22223333332221 1346788888865
No 77
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.08 E-value=0.00087 Score=62.98 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred cccccchhHHHHHHHH---HhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVEL---LLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~---L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+..+ +.... ...+-+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 6789999887765444 33322 12356889999999999999999875
No 78
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.06 E-value=0.0012 Score=58.87 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=56.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccc---------cc-----cceEEEEeCCCCCHHHHHHHHHHHhhCCCC-----
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVED---------HF-----DLKAWTCVSDDFDVIRLTKSILLSIASDQN----- 276 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----- 276 (337)
-.++.|+|.+|+||||||..+........ .. ..++|++....++...+.. ++..++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46999999999999999988875421111 11 3678999888887776654 3444432210
Q ss_pred ---CCCCCHH---HHHHHHHHHcC--CCeEEEEEeCCC
Q 043252 277 ---VDNHDLN---KLQEELKKQLF--GKKFLLVLDDVW 306 (337)
Q Consensus 277 ---~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 306 (337)
....+.+ .+...+...+. .+--|||+|.+-
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0122333 34445555554 345599999984
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.03 E-value=0.0014 Score=65.32 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=59.2
Q ss_pred ccccccchhHHHHHHHHH----hcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCH
Q 043252 188 EAKVYGRETEKKEIVELL----LKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDV 260 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L----~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 260 (337)
-.++.|.++.+++|.+++ ..++. -+-...+-|.++|++|.|||+||+.+++. ...+| +.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH----
Confidence 346788888887776654 22221 12234678999999999999999999985 33333 2333221
Q ss_pred HHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 261 IRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 261 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
+.... .......+...+........++|+||++..
T Consensus 274 ----------l~sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ----------HHSSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ----------hhccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 11111 112223334444444556789999999954
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.00052 Score=68.76 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred cccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHH
Q 043252 189 AKVYGRETEKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTK 265 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 265 (337)
..++|.+..++.+...+..... ..+.....+.++|++|+|||++|+.+.+.. . ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3578999888888777653210 012335579999999999999999998742 1 1233444443221100
Q ss_pred HHHHHhhCCCCCCCCCH---HHHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCC
Q 043252 266 SILLSIASDQNVDNHDL---NKLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQ 321 (337)
Q Consensus 266 ~il~~~~~~~~~~~~~~---~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 321 (337)
+..+.+..+ ..... ..+...++. ....+|+||++.....+....|...+.
T Consensus 530 --~~~l~g~~~-g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 530 --VSRLIGAPP-GYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp --CSSSCCCCS-CSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred --HhhhcCCCC-CCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 000111110 11000 112223322 345799999998776666666665554
No 81
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.01 E-value=0.0014 Score=55.61 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=53.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCC--------CCCCCCHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQ--------NVDNHDLN 283 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~--------~~~~~~~~ 283 (337)
-.++.|+|++|+|||||++.+........ .-...+|+.....++...+. .++..+.... .....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35999999999999999999876321211 12467888877766655443 3333333211 00112222
Q ss_pred H---HHHHHHHHcC-CCeEEEEEeCCCC
Q 043252 284 K---LQEELKKQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 284 ~---~~~~l~~~L~-~kr~LlVlDdv~~ 307 (337)
. +...+.+.+. .+.-+||||++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2333444443 4567999999864
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.01 E-value=0.0055 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 83
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.99 E-value=0.0014 Score=61.73 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred cccccchhHHHHHHHHHh---cCC---CCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHH
Q 043252 189 AKVYGRETEKKEIVELLL---KDD---SRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIR 262 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 262 (337)
.+++|.++.++++.+.+. .+. .-+....+-+.|+|++|+|||+||+.+.+.. ...| +.++++.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH--
Confidence 568999887766655532 210 0001122358899999999999999998742 2222 23333322110
Q ss_pred HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 263 LTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 263 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
. .......+...+.....+...+|+||++..
T Consensus 89 -------------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 -------------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred -------------H-hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 001112223334444456788999999954
No 84
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.98 E-value=0.0053 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988754
No 85
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.98 E-value=0.0015 Score=59.20 Aligned_cols=85 Identities=21% Similarity=0.122 Sum_probs=52.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~~ 291 (337)
-.++.|.|.+|+||||||..+...... .=..++|++....++... +..++..... ...+.+++.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 359999999999999999888754221 123578999888777442 3334322110 22345555555554
Q ss_pred HcC-CCeEEEEEeCCCC
Q 043252 292 QLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 292 ~L~-~kr~LlVlDdv~~ 307 (337)
..+ .+--+||+|.+-.
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 432 3445999999843
No 86
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00056 Score=63.50 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=38.6
Q ss_pred cccccccchhHHHHHHHHHh----cCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLL----KDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-.++.|.++.+++|.+.+. .++. .+-...+-|.++|++|.|||.||+.+.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34578899988888876543 2210 01234578999999999999999999985
No 87
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.95 E-value=0.0032 Score=55.67 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=53.8
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHH-HHHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKL-QEELKKQ 292 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~-~~~l~~~ 292 (337)
++.|.|++|+|||||+.++.........=..++||+..+.++... +++++.+... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 789999999999999977765422110023578999888887642 5555543211 23455555 3333332
Q ss_pred --c-CCCeEEEEEeCCCCC
Q 043252 293 --L-FGKKFLLVLDDVWNE 308 (337)
Q Consensus 293 --L-~~kr~LlVlDdv~~~ 308 (337)
+ .++.-|||+|.|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3 456679999999543
No 88
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.00057 Score=57.64 Aligned_cols=112 Identities=11% Similarity=-0.037 Sum_probs=59.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC-CCCCHHHHHHHHHHHcC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV-DNHDLNKLQEELKKQLF 294 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~L~ 294 (337)
-.++.|.|..|+||||++..+....... .. .++.+.... +.. ....+++.++..... .......+.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~-kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DV-KYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TC-CEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CC-EEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4689999999999999997666532111 12 223332221 111 111233333221110 12234556666666665
Q ss_pred CCeE-EEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKF-LLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
+.++ +||+|.+..-..+..+.+. .+.+ .|-.||+|-+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 5556 9999999654333333332 2332 26788888764
No 89
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00081 Score=62.55 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=36.9
Q ss_pred cccccchhHHHHHHHHHh----cCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLL----KDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|.++.+++|.+.+. .++. -+-...+-|.++|++|.|||+||+.+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 468899888888876542 1110 01234578899999999999999999985
No 90
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.87 E-value=0.0028 Score=56.65 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=56.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccccc----ccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDH----FDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDLN 283 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~~ 283 (337)
-.++.|+|++|+||||||..+......... -..++|++....++...+.. ++..++.... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 359999999999999999888764221111 23578999888887776553 3444432210 0122333
Q ss_pred ---HHHHHHHHHcC--CCeEEEEEeCCC
Q 043252 284 ---KLQEELKKQLF--GKKFLLVLDDVW 306 (337)
Q Consensus 284 ---~~~~~l~~~L~--~kr~LlVlDdv~ 306 (337)
.+...+...+. .+--+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 34445555553 456699999984
No 91
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.0015 Score=54.07 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 194 RETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 194 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
|++.++.|.+.+.... .....+|+|.|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567788888887542 23457999999999999999998875
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.79 E-value=0.00048 Score=61.96 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578888777777666643200 0123457899999999999999999874
No 93
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0019 Score=59.54 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=38.0
Q ss_pred cccccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLK----DDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-.++.|.++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+.+.+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 345688998888877665432 110 01234578999999999999999999985
No 94
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.75 E-value=0.013 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 95
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.70 E-value=0.0013 Score=57.98 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=37.1
Q ss_pred cccccchhHHHHHHHHHhcC--CC-C-----CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKD--DS-R-----NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~--~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+...+... .. . .......+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988877541 00 0 0012346789999999999999999874
No 96
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.67 E-value=0.005 Score=58.26 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=34.1
Q ss_pred ccccccchhHHHHHHHH---HhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVEL---LLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|.++.+.++.+. +..... -+-.-.+-+.|+|++|+||||||+.++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35688988776665544 332210 00011234899999999999999999875
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.64 E-value=0.0018 Score=53.84 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.++|.+.+... .+...+|+|+|+.|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555655432 234579999999999999999998763
No 98
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.0016 Score=65.50 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=38.6
Q ss_pred cccccccchhHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 187 EEAKVYGRETEKKEIVELLLK----DD---SRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-..++|.+..+++|.+++.. +. .-.-.....|.|+|++|+||||||+.+...
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345689999999888887753 10 001123457999999999999999999874
No 99
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.56 E-value=0.0088 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+++|+|++|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999888653
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.56 E-value=0.0048 Score=55.72 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccc----cceEEEEeCCCCCHHHHHHHHHHHhhCCC-----------CCCC
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHF----DLKAWTCVSDDFDVIRLTKSILLSIASDQ-----------NVDN 279 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~il~~~~~~~-----------~~~~ 279 (337)
.-.++.|+|+.|+|||||+..++......... ..++|++....+....+ ..+........ ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999988642111111 23488887666544433 22333322110 0001
Q ss_pred CCHHHHHHHHHHHcC------CCeEEEEEeCCCCC
Q 043252 280 HDLNKLQEELKKQLF------GKKFLLVLDDVWNE 308 (337)
Q Consensus 280 ~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~ 308 (337)
.....+...+...+. .+.=|||||.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233444444443 35669999999653
No 101
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.55 E-value=0.0038 Score=57.38 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=51.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccc----cccceEEEEeCCCCCHHHHHHHHHHHhhCCCC--------CCCCCHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVED----HFDLKAWTCVSDDFDVIRLTKSILLSIASDQN--------VDNHDLN 283 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~--------~~~~~~~ 283 (337)
-.++.|+|++|+|||||+..++-...... .-..++|++....++...+. .+.+.++.... ....+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 45999999999999999997653211111 22357888877766665533 34444432110 0112222
Q ss_pred ---HHHHHHHHHcC-CCeEEEEEeCCCC
Q 043252 284 ---KLQEELKKQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 284 ---~~~~~l~~~L~-~kr~LlVlDdv~~ 307 (337)
.+...+...+. .+--+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22333333332 3566999999843
No 102
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.54 E-value=0.0015 Score=58.44 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=36.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|++..++.+...+.... -+.++|++|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH
Confidence 458899999998888886532 5889999999999999999874
No 103
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.53 E-value=0.0012 Score=52.68 Aligned_cols=20 Identities=50% Similarity=0.755 Sum_probs=18.8
Q ss_pred EEEEEEccCCCchHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLV 236 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v 236 (337)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999998
No 104
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.51 E-value=0.0025 Score=60.36 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=36.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+...+.... -|.|+|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 347899999988888876543 6889999999999999999875
No 105
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.48 E-value=0.013 Score=52.05 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 192 YGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 192 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+|-...+..+...+.... ......+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444555554554433 234577999999999999999998865
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.48 E-value=0.0018 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++.|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 107
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0039 Score=54.71 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443332 2345679999999999999999999763
No 108
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.43 E-value=0.0016 Score=53.57 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCeE-EEEEeCCCC---CChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 285 LQEELKKQLFGKKF-LLVLDDVWN---ENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 285 ~~~~l~~~L~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.....++.+.+.+| |||||++-. ......+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34556666766666 999999932 11223344555554445566799999963
No 109
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.42 E-value=0.0019 Score=55.89 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=34.4
Q ss_pred cccccchhHHHHHHHHHhc---CCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLK---DDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+.+.+.. +.. -+.....-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5689998888777765531 000 00011224779999999999999999875
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.40 E-value=0.019 Score=51.03 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
-.++.|.|.+|+||||||..+..+.-... ..++|++.. .+..++...++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 35999999999999999988875422222 456777655 345555555543
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.39 E-value=0.0018 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.38 E-value=0.0018 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998653
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0019 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999764
No 114
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.002 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.34 E-value=0.0022 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.004 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 196 TEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 196 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+.++..+..... ......+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334455555554433 3445689999999999999999998763
No 117
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.32 E-value=0.0027 Score=52.38 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|+|+.|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998764
No 118
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.30 E-value=0.016 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999987764
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.23 E-value=0.002 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 120
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.22 E-value=0.0043 Score=56.25 Aligned_cols=50 Identities=34% Similarity=0.357 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVELLLKD-------D--SRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789998888888777310 0 001113457899999999999999999874
No 121
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.18 E-value=0.0026 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997553
No 122
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.18 E-value=0.0039 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 123
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.17 E-value=0.003 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999763
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.16 E-value=0.0033 Score=52.17 Aligned_cols=25 Identities=44% Similarity=0.325 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|+|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998763
No 125
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.16 E-value=0.006 Score=56.91 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=48.1
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhC-------CCCCCCCCHHH----H
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIAS-------DQNVDNHDLNK----L 285 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~-------~~~~~~~~~~~----~ 285 (337)
.++|+|..|+|||||++.+..+.... +-+.++++.+.+.. ...+++.++...-.. ....+...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 68999999999999999988753222 22345666666543 233444444332000 00001111111 0
Q ss_pred HHHHHHHc---CCCeEEEEEeCC
Q 043252 286 QEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 286 ~~~l~~~L---~~kr~LlVlDdv 305 (337)
.-.+.+++ ++++.||++||+
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 11233333 589999999999
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.035 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|.++|++|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988864
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.15 E-value=0.024 Score=53.07 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 195 ETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 195 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.++.+...+.... ..+.|.|.+|.||||++..+...
T Consensus 31 ~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 344455555554322 28999999999999999888764
No 128
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.0032 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999764
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.14 E-value=0.0036 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 130
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.14 E-value=0.0033 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 131
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.13 E-value=0.0069 Score=54.46 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=31.6
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 192 YGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 192 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++.+.-.+.+++.|...- ..+....|.|+|+.|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344555666666664322 1234567999999999999999988653
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.12 E-value=0.0031 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999999999999763
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.10 E-value=0.0031 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999865
No 134
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.09 E-value=0.0032 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.08 E-value=0.0036 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.07 E-value=0.0029 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 137
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.07 E-value=0.0053 Score=52.57 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=32.1
Q ss_pred cccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSR------NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+|||||++.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 56888876665554433210000 0001123899999999999999999875
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.05 E-value=0.0011 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.070 Sum_probs=18.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955543
No 139
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.05 E-value=0.0032 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|+|+.|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998753
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.0039 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 141
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.01 E-value=0.058 Score=50.05 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 197 EKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 197 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.++|.++|..... ......++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566666653221 0123578999999999999999987764
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.00 E-value=0.0036 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 143
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.00 E-value=0.0029 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999753
No 144
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.99 E-value=0.0056 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|+|+|+.|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998763
No 145
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0049 Score=50.59 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0032 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 147
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.93 E-value=0.004 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999764
No 148
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.93 E-value=0.014 Score=52.70 Aligned_cols=108 Identities=12% Similarity=0.143 Sum_probs=56.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
.+++|+|+.|+|||||.+.+.... .......+ +.+.++.... .......+. ... ...........+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~-~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFV--HESKKCLVN-QRE-VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSC--CCCSSSEEE-EEE-BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhh--hhcccccee-eee-eccccCCHHHHHHHHhhhC
Confidence 499999999999999999886531 11111111 2222221100 000000000 000 0011123445788888888
Q ss_pred eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecCC
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRNQ 336 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 336 (337)
.=+|++|++.+ .+.+..+.... ..|..||+||...
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTT 231 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCS
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccC
Confidence 88999999964 35555543332 2355688888654
No 149
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.92 E-value=0.0063 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 150
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.0046 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998764
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.89 E-value=0.0037 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|+|+.|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998764
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.87 E-value=0.0039 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999998753
No 153
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.87 E-value=0.0063 Score=50.10 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|.|+.|+||||+++.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.86 E-value=0.0046 Score=51.82 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0054 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988753
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.84 E-value=0.0052 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 157
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.84 E-value=0.0049 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 158
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.83 E-value=0.0049 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999984
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.83 E-value=0.0039 Score=50.10 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 160
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.82 E-value=0.0058 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|+|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999998763
No 161
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.81 E-value=0.0052 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999875
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.80 E-value=0.0058 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 163
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.80 E-value=0.0054 Score=54.99 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443222 123889999999999999999874
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.79 E-value=0.0064 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 165
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.79 E-value=0.0066 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|+|+.|.|||||++.++.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 359999999999999999999763
No 166
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.77 E-value=0.006 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998864
No 167
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.77 E-value=0.006 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 168
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.76 E-value=0.0061 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...|.|.|+.|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.76 E-value=0.0057 Score=50.42 Aligned_cols=24 Identities=17% Similarity=0.493 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|.|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998753
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.76 E-value=0.0088 Score=51.99 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=33.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSR------NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|.+..++++.+....-... +-.-.+-+.|+|++|+|||||++.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 356889887766655443211000 0001123899999999999999999875
No 171
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.0054 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|.|+.|+||||+++.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999999998763
No 172
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.76 E-value=0.0062 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 173
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.76 E-value=0.0077 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 174
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.75 E-value=0.0058 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+.+||+|.|-|||||||.+-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999977643
No 175
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.73 E-value=0.0059 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999988764
No 176
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.73 E-value=0.0079 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888764
No 177
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.73 E-value=0.0078 Score=54.67 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 200 EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 200 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+.++.+..-. .-..++|+|+.|+|||||++.+.+.
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH
Confidence 4556665332 2348999999999999999988764
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.73 E-value=0.0069 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 179
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.72 E-value=0.0097 Score=54.15 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+.++|++|+|||++|+.+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 180
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.72 E-value=0.007 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.++|.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998764
No 181
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.70 E-value=0.0071 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 182
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.0069 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 183
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.69 E-value=0.005 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999998763
No 184
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.66 E-value=0.0045 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 185
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.65 E-value=0.0061 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.61 E-value=0.0068 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999864
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.61 E-value=0.04 Score=49.35 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=52.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC----------------------
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD---------------------- 274 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~---------------------- 274 (337)
.++.|.|.+|+||||||..+...... .=..++|++. ..+...+...++.....-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 48999999999999999888764222 1124556554 345566666654432110
Q ss_pred ----------CCCCCCCHHHHHHHHHHHcCC--CeEEEEEeCCC
Q 043252 275 ----------QNVDNHDLNKLQEELKKQLFG--KKFLLVLDDVW 306 (337)
Q Consensus 275 ----------~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~ 306 (337)
......+...+...+++..+. ..-|||+|-+.
T Consensus 123 ~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 001233566676666665432 46688888774
No 188
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.59 E-value=0.0055 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.59 E-value=0.0084 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 190
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.57 E-value=0.018 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.56 E-value=0.0073 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.56 E-value=0.051 Score=50.80 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=52.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHh------------------------
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSI------------------------ 271 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~------------------------ 271 (337)
-.++.|.|.+|+|||||+..+....... .=..++|++... +...+...++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 3599999999999999998887652211 112466766543 3444444443211
Q ss_pred ----hCCC----CCCCCCHHHHHHHHHHHcC-CCeEEEEEeCCCC
Q 043252 272 ----ASDQ----NVDNHDLNKLQEELKKQLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 272 ----~~~~----~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 307 (337)
.... .....+..++...++.... .+--+||+|.+..
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 0000 0022356777777776653 3445999998843
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.56 E-value=0.0074 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999973
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.55 E-value=0.0073 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 195
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.54 E-value=0.0051 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=17.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998753
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.53 E-value=0.0066 Score=52.82 Aligned_cols=51 Identities=25% Similarity=0.202 Sum_probs=31.2
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|.++.++.|.+.+..+-. -+-.-.+-+.|+|++|+||||||+.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567777777666654321000 00001122999999999999999999874
No 197
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.52 E-value=0.0074 Score=49.05 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.51 E-value=0.0082 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhccccc---c-cccceEEEEeCCCCCHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVE---D-HFDLKAWTCVSDDFDVI 261 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~ 261 (337)
-.+++|+|+.|+|||||++.+....... . .-...+|+.-...+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 4699999999999999999997531111 0 12346777765544443
No 199
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.014 Score=47.33 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 200
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.46 E-value=0.011 Score=57.55 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899988888887777543 37899999999999999999874
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.45 E-value=0.0089 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 202
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.44 E-value=0.019 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+++|+|+.|+|||||++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998865
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.43 E-value=0.0082 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999998873
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.43 E-value=0.027 Score=61.34 Aligned_cols=85 Identities=21% Similarity=0.110 Sum_probs=54.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~ 290 (337)
..+.+.|+|++|+|||+||.++...... .=..++|+.+.+.++... ++.++.+... ...+.+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3469999999999999999888764222 112467888888777655 3344321110 2334455555555
Q ss_pred HHcC-CCeEEEEEeCCC
Q 043252 291 KQLF-GKKFLLVLDDVW 306 (337)
Q Consensus 291 ~~L~-~kr~LlVlDdv~ 306 (337)
...+ .+--+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 456699999994
No 205
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.41 E-value=0.0085 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999974
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.40 E-value=0.0083 Score=49.97 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 193 GRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+..+..+.+...+.. ....+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555555532 24679999999999999999888764
No 207
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.40 E-value=0.015 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+++|+|+.|+|||||.+.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998753
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.40 E-value=0.06 Score=50.17 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=33.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILL 269 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 269 (337)
-.++.|.|.+|+||||||..+....... .=..++|++.. .+...+...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHH
Confidence 3589999999999999998887642211 11246676654 345555555543
No 209
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.39 E-value=0.0085 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 210
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.39 E-value=0.0044 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998754
No 211
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.39 E-value=0.059 Score=51.02 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=52.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCC---------------------
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASD--------------------- 274 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~--------------------- 274 (337)
-.++.|.|.+|+||||||..+..+.... +=..++|++... +..++...++.....-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 318 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 318 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 4589999999999999998887643221 112466776544 4555555544322110
Q ss_pred -------C------CCCCCCHHHHHHHHHHHcCC-CeEEEEEeCCCC
Q 043252 275 -------Q------NVDNHDLNKLQEELKKQLFG-KKFLLVLDDVWN 307 (337)
Q Consensus 275 -------~------~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 307 (337)
. .....+.+.+...+++.... +-=+||+|.+..
T Consensus 319 ~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 319 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 0 00124566777777665432 344999999854
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.029 Score=47.30 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=45.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc-ccccccc-cceEEEEeCCCCCHHHHHHHHHHHhhCCCCC------------------
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND-KQVEDHF-DLKAWTCVSDDFDVIRLTKSILLSIASDQNV------------------ 277 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F-~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~------------------ 277 (337)
.+.|+|+.|+||||+.....-+ ....... .+.+.+..........+...+...+......
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 8899999999999877554322 1111122 2233333333222333444444333221100
Q ss_pred -CCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 278 -DNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 278 -~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
...+.+.+...+...+.+- =+||||+++.
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0123456666666544333 3789999976
No 213
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.39 E-value=0.0099 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+++|+|+.|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356999999999999999998865
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.38 E-value=0.0082 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999964
No 215
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.38 E-value=0.0092 Score=49.32 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 216
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.37 E-value=0.048 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++.|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888653
No 217
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.36 E-value=0.0076 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988764
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.35 E-value=0.011 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 219
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.35 E-value=0.0085 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999964
No 220
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.29 E-value=0.014 Score=50.85 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999964
No 221
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.28 E-value=0.0054 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 222
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.28 E-value=0.018 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 223
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.26 E-value=0.009 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 224
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.25 E-value=0.086 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.25 E-value=0.013 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999875
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.25 E-value=0.013 Score=52.43 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988753
No 227
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.24 E-value=0.011 Score=48.20 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.23 E-value=0.012 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.23 E-value=0.012 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999987
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.22 E-value=0.063 Score=53.64 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=58.7
Q ss_pred cccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCC
Q 043252 187 EEAKVYGRETEKKEIVELLLKDDS-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFD 259 (337)
Q Consensus 187 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 259 (337)
.-..+.|.++.++.|.+.+.-+-. -+-...+-|.++|++|.|||.||+.+.+. ....| +.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEecc---
Confidence 345677888888887776543211 01223456889999999999999999985 22222 22221
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 043252 260 VIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 260 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 307 (337)
.+ ++ ... ...+...+...+...-+...++|+||++..
T Consensus 545 -~~----l~----s~~--vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 -PE----LL----TMW--FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -HH----HH----TTT--CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -ch----hh----ccc--cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 11 111 222333344444444456789999999953
No 231
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.21 E-value=0.0065 Score=51.22 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=15.9
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~ 237 (337)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 232
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.18 E-value=0.022 Score=52.88 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=35.7
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 189 AKVYGRETEKKEIVELLLKD--------DSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 189 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+..++.|...+... ........+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888876666321 0001112456889999999999999999864
No 233
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.18 E-value=0.011 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998653
No 234
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.17 E-value=0.014 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.16 E-value=0.01 Score=51.22 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999964
No 236
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.16 E-value=0.092 Score=50.60 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=51.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHH-HHcC-
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELK-KQLF- 294 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~-~~L~- 294 (337)
.++.|.|.+|.||||++..+....... ...+.+.......... +.+.+.. ...+...+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~----L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARR----LGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHH----HHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHH----hHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 488999999999999998887642211 1234444433222222 2222211 1111111100000 0000
Q ss_pred ----CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 295 ----GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 295 ----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
.+-=+||+|++...+...+..+...++ .+.++|++
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 012389999987666666677766665 45666664
No 237
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.16 E-value=0.037 Score=60.33 Aligned_cols=85 Identities=22% Similarity=0.135 Sum_probs=56.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~~ 291 (337)
-.++.|+|++|+||||||.++....... =..++|++....++... ++.++.+... +..+.+++.+.++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4599999999999999998887653221 23578888888776542 4444432211 33566777766665
Q ss_pred HcC-CCeEEEEEeCCCC
Q 043252 292 QLF-GKKFLLVLDDVWN 307 (337)
Q Consensus 292 ~L~-~kr~LlVlDdv~~ 307 (337)
..+ .+--|||+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 542 3455999999854
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.14 E-value=0.026 Score=53.00 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 197 EKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 197 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+.|.+.|..... -.-....+++|+|..|+|||||++.+..
T Consensus 271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 34455555543211 0123467999999999999999998875
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.14 E-value=0.0099 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.10 E-value=0.011 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999964
No 241
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.10 E-value=0.13 Score=47.92 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSIL 268 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 268 (337)
-.++.|.|.+|+||||||..+..+.-..+ ..++|++... +..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHH
Confidence 35899999999999999988876532221 2456665443 3334444433
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.08 E-value=0.019 Score=47.46 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-+..+..++..- +....+.|+|++|.||||+|..+.+.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355666666431 22347999999999999999888774
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.07 E-value=0.013 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.07 E-value=0.012 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999964
No 245
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.07 E-value=0.013 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 246
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.06 E-value=0.15 Score=47.62 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHH
Q 043252 200 EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLS 270 (337)
Q Consensus 200 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~ 270 (337)
+.++.|..-. +-.-++|+|..|+|||+|++.+.++. .+.+-+.++++-+.+.. .+.+++.++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665322 23478999999999999999887752 22333556777777654 345666666654
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.06 E-value=0.016 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|+|++|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4679999999999999999888754
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.06 E-value=0.013 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++.|+|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 569999999999999999988764
No 249
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.05 E-value=0.014 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999964
No 250
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.04 E-value=0.012 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999964
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.04 E-value=0.012 Score=50.99 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999964
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.01 E-value=0.037 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHh
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....+|.|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988865
No 253
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.00 E-value=0.013 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.98 E-value=0.01 Score=49.54 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999975
No 255
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.98 E-value=0.013 Score=50.19 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.97 E-value=0.011 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999975
No 257
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.95 E-value=0.015 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.94 E-value=0.013 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4999999999999999999975
No 259
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.94 E-value=0.093 Score=49.12 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCC-CHHHHHHHHHHHhhCC-----
Q 043252 201 IVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDF-DVIRLTKSILLSIASD----- 274 (337)
Q Consensus 201 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~~~~~----- 274 (337)
.++.|..-. +-.-++|.|..|+|||+|++.+.++. .+.+-+.++++-+.+.. ...+++.++...=...
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~ 228 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIA 228 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTC
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhccccccccccc
Confidence 456665332 23478999999999999999888752 22344677888887655 3456676666531111
Q ss_pred --CCC-----CCCC------HHHHHHHHHHHc---CCCeEEEEEeCC
Q 043252 275 --QNV-----DNHD------LNKLQEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 275 --~~~-----~~~~------~~~~~~~l~~~L---~~kr~LlVlDdv 305 (337)
... .... .....-.+.+++ +++..||++||+
T Consensus 229 ~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 229 ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 100 1111 112223344555 368999999998
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.90 E-value=0.015 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999865
No 261
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.88 E-value=0.015 Score=50.52 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999964
No 262
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.88 E-value=0.026 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.....++.+.|.||+|||||+..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34567899999999999999998874
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.88 E-value=0.038 Score=59.37 Aligned_cols=86 Identities=21% Similarity=0.115 Sum_probs=56.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCC----CCCCCHHHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQN----VDNHDLNKLQEELKK 291 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~l~~ 291 (337)
-+++.|+|++|+||||||.++...... .=..++|++....++... ++.++.+.. ....+.+++.+.+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 459999999999999999888764222 223688898888777542 344433211 023456666666665
Q ss_pred HcC-CCeEEEEEeCCCCC
Q 043252 292 QLF-GKKFLLVLDDVWNE 308 (337)
Q Consensus 292 ~L~-~kr~LlVlDdv~~~ 308 (337)
... .+--+||+|.+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 442 34559999999543
No 264
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.86 E-value=0.015 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.86 E-value=0.014 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999875
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.85 E-value=0.016 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.84 E-value=0.019 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 35999999999999999998875
No 268
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.83 E-value=0.034 Score=50.21 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+...+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 3567999999999999999988764
No 269
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.82 E-value=0.015 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999965
No 270
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.81 E-value=0.015 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999975
No 271
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.81 E-value=0.014 Score=47.05 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999876
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.80 E-value=0.017 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998764
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.80 E-value=0.017 Score=47.90 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=42.6
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHH-----------hhCCCCCCCCCHHHHH
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLS-----------IASDQNVDNHDLNKLQ 286 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~-----------~~~~~~~~~~~~~~~~ 286 (337)
+|.|.|++|+||+|.|+.+... |. ...++ ..+++++-+.. +... ..-+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G---~lvpd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERG---ELVPDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHT---CCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcC---CcCCHHHHH
Confidence 6889999999999999998764 32 12232 23444332221 1111 223344556
Q ss_pred HHHHHHcCCCeEEEEEeCCCC
Q 043252 287 EELKKQLFGKKFLLVLDDVWN 307 (337)
Q Consensus 287 ~~l~~~L~~kr~LlVlDdv~~ 307 (337)
..+.+.+..... +|||++=.
T Consensus 66 ~lv~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 66 ALIEEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHHHHCCSSSC-EEEESCCC
T ss_pred HHHHHhhccCCc-eEecCCch
Confidence 667777755443 67898843
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.78 E-value=0.015 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 275
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.77 E-value=0.017 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 276
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.76 E-value=0.017 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 277
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.76 E-value=0.016 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999764
No 278
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.74 E-value=0.016 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998763
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.73 E-value=0.017 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35999999999999999999875
No 280
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.73 E-value=0.019 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.72 E-value=0.021 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 282
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.71 E-value=0.021 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998763
No 283
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.69 E-value=0.019 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.66 E-value=0.018 Score=49.93 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999975
No 285
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.64 E-value=0.021 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34578999999999999999987764
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.61 E-value=0.024 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.|+|+.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999863
No 287
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.60 E-value=0.021 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.53 E-value=0.029 Score=52.08 Aligned_cols=43 Identities=33% Similarity=0.364 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDS---RNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..++|.+++..... .......+|.|+|.+|+||||++..+...
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666643311 01133579999999999999999887653
No 289
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.50 E-value=0.053 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 199 KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 199 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++.|..-. .-.-++|+|.+|+|||+|++.+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 35677776432 2347899999999999999988874
No 290
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.50 E-value=0.013 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=17.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 291
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.50 E-value=0.021 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 292
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.49 E-value=0.025 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|+|+.|+||||||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999875
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.48 E-value=0.02 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999975
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.42 E-value=0.022 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++.|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4999999999999999988875
No 295
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.42 E-value=0.023 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998764
No 296
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.029 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999863
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.35 E-value=0.023 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++.|+|++|+|||||++.+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 49999999999999999988764
No 298
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.35 E-value=0.024 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999854
No 299
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.34 E-value=0.13 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998864
No 300
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.34 E-value=0.031 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999998763
No 301
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.33 E-value=0.048 Score=51.09 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHH-HHHHhccccccccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCCCC
Q 043252 200 EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKQVEDHFD-LKAWTCVSDDF-DVIRLTKSILLSIASDQN 276 (337)
Q Consensus 200 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~~~ 276 (337)
+.++.|..-. .-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++..++...=.....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3555655322 2336899999999999995 5776642 234 24666666643 344555555542111110
Q ss_pred C----CC-CC-HHH-----HHHHHHHHc--CCCeEEEEEeCC
Q 043252 277 V----DN-HD-LNK-----LQEELKKQL--FGKKFLLVLDDV 305 (337)
Q Consensus 277 ~----~~-~~-~~~-----~~~~l~~~L--~~kr~LlVlDdv 305 (337)
. .. .. ... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0 11 11 111 111233333 589999999999
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.32 E-value=0.054 Score=51.22 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 198 KKEIVELLLKDDSR---NDGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 198 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++|.++|...... ......+|+|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666542211 124578999999999999999988863
No 303
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.30 E-value=0.031 Score=47.08 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 304
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.28 E-value=0.026 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.091 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+++|+|+.|+|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999999863
No 305
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.26 E-value=0.025 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999763
No 306
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.26 E-value=0.028 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999988753
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.24 E-value=0.025 Score=51.04 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999975
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.24 E-value=0.033 Score=43.57 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.22 E-value=0.018 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.610 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999965
No 310
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.20 E-value=0.03 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 311
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.19 E-value=0.066 Score=50.23 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=48.1
Q ss_pred EEEEEEccCCCchHHHH-HHHHhccccccccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCCCC-----CCCCC-HHH---
Q 043252 217 SVIPIIGMGGLGKTTLA-QLVYNDKQVEDHFD-LKAWTCVSDDF-DVIRLTKSILLSIASDQN-----VDNHD-LNK--- 284 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~~~-----~~~~~-~~~--- 284 (337)
.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++..++...=..... ..... ...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 36899999999999996 5777642 234 24666666643 344555555542111100 01111 111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 043252 285 --LQEELKKQL--FGKKFLLVLDDV 305 (337)
Q Consensus 285 --~~~~l~~~L--~~kr~LlVlDdv 305 (337)
..-.+.+++ +++..||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111233333 589999999999
No 312
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.18 E-value=0.12 Score=47.95 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHh
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
....++..|.|.+|.||||+.+...+
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45688999999999999999998875
No 313
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.17 E-value=0.027 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 314
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.14 E-value=0.044 Score=50.78 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=49.9
Q ss_pred EEEEEccCCCchHHHHHHHHhccccc-cccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCCCC-----CCCCC-HHH----
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVE-DHFD-LKAWTCVSDDF-DVIRLTKSILLSIASDQN-----VDNHD-LNK---- 284 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~~~-----~~~~~-~~~---- 284 (337)
-++|.|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.+++.++...=..... ..... ...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 57899999999999999998864331 1111 45566666543 445666665543101000 01111 111
Q ss_pred -HHHHHHHHc---CCCeEEEEEeCC
Q 043252 285 -LQEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 285 -~~~~l~~~L---~~kr~LlVlDdv 305 (337)
..-.+.+++ +++..||++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122344444 389999999999
No 315
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.13 E-value=0.037 Score=43.68 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998764
No 316
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.12 E-value=0.028 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998754
No 317
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.11 E-value=0.043 Score=43.45 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 318
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.10 E-value=0.03 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+..|+|+.|.|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999998853
No 319
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.035 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.03 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998763
No 321
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.06 E-value=0.029 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4999999999999999999964
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.03 E-value=0.031 Score=43.74 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 323
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.03 E-value=0.07 Score=43.78 Aligned_cols=85 Identities=22% Similarity=0.176 Sum_probs=43.0
Q ss_pred EEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHHHHc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELKKQL 293 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~~~L 293 (337)
.|+|=|.-|+||||.++.+++.- ...-..++...-+......+.+..++..-...... -..+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999998752 22222233333333223334444444321100000 0011233445566666
Q ss_pred CCCeEEEEEeCC
Q 043252 294 FGKKFLLVLDDV 305 (337)
Q Consensus 294 ~~kr~LlVlDdv 305 (337)
... ..||.|-.
T Consensus 80 ~~g-~~Vi~DRy 90 (197)
T 3hjn_A 80 SEG-YAVLLDRY 90 (197)
T ss_dssp TTT-CEEEEESC
T ss_pred HCC-CeEEeccc
Confidence 544 35677765
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.03 E-value=0.03 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999988754
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.02 E-value=0.03 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999974
No 326
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.01 E-value=0.072 Score=54.21 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=19.5
Q ss_pred cEEEEEEccCCCchHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLV 236 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v 236 (337)
-.+++|.|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999988
No 327
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.97 E-value=0.032 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888754
No 328
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.032 Score=43.73 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888754
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.96 E-value=0.041 Score=44.47 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998764
No 330
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.96 E-value=0.031 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 331
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.96 E-value=0.031 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.301 Sum_probs=19.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999987764
No 332
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.96 E-value=0.077 Score=46.23 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455566665433212335678999999999999999999765
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.95 E-value=0.032 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.037 Score=45.73 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 335
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.91 E-value=0.04 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 336
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.90 E-value=0.033 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999877654
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.89 E-value=0.032 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999975
No 338
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.89 E-value=0.032 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4899999999999999999974
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.87 E-value=0.033 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999988753
No 340
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.87 E-value=0.032 Score=43.69 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-|.|+|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998864
No 341
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.84 E-value=0.1 Score=43.70 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.84 E-value=0.033 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999975
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.83 E-value=0.045 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998765
No 344
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.82 E-value=0.09 Score=56.59 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=57.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC----CCCCHHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV----DNHDLNKLQEELK 290 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~l~ 290 (337)
.-++|-|+|+.|+||||||.++... .+..=...+|+...+.++..- ++.++.+... .+..-++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 3479999999999999999888754 333335688999888887664 5555544321 3344455555566
Q ss_pred HHcC-CCeEEEEEeCC
Q 043252 291 KQLF-GKKFLLVLDDV 305 (337)
Q Consensus 291 ~~L~-~kr~LlVlDdv 305 (337)
..++ +.--+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6664 44559999988
No 345
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.82 E-value=0.035 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998754
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.82 E-value=0.04 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998753
No 347
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.81 E-value=0.034 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=26.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSD 256 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 256 (337)
-.++.|.|++|+|||||+..+..... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999877754321 1112466776544
No 348
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.79 E-value=0.036 Score=43.48 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.78 E-value=0.061 Score=42.57 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..--|.|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 350
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.78 E-value=0.041 Score=44.13 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998764
No 351
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.77 E-value=0.035 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999974
No 352
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.77 E-value=0.035 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998764
No 353
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.76 E-value=0.036 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888754
No 354
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.75 E-value=0.046 Score=43.38 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999888764
No 355
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.75 E-value=0.089 Score=48.75 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=49.8
Q ss_pred EEEEEccCCCchHHHHHHHHhccccc--------cccc-ceEEEEeCCCC-CHHHHHHHHHHHh--hC-----CCCCCCC
Q 043252 218 VIPIIGMGGLGKTTLAQLVYNDKQVE--------DHFD-LKAWTCVSDDF-DVIRLTKSILLSI--AS-----DQNVDNH 280 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~~-~~~~~~~~il~~~--~~-----~~~~~~~ 280 (337)
-++|.|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.+++.++...= .. ... +..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~-d~p 227 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA-DDP 227 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET-TSC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC-CCC
Confidence 67899999999999999998764431 1111 45566666543 3455555544321 00 001 111
Q ss_pred CHHH-----HHHHHHHHc---CCCeEEEEEeCC
Q 043252 281 DLNK-----LQEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 281 ~~~~-----~~~~l~~~L---~~kr~LlVlDdv 305 (337)
.... ..-.+.+++ +++..||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2221 122334444 389999999999
No 356
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.75 E-value=0.053 Score=47.76 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHH
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
.+++|.+.+. -.+++|+|+.|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 3566666663 2389999999999999999997
No 357
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.75 E-value=0.037 Score=43.34 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 358
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.74 E-value=0.046 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998853
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.72 E-value=0.036 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4899999999999999999974
No 360
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.71 E-value=0.05 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|..|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 361
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.70 E-value=0.041 Score=47.29 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
++|+|.|-||+||||+|..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888999999999999877653
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.67 E-value=0.035 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 363
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.66 E-value=0.038 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999988763
No 364
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.65 E-value=0.046 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 365
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.64 E-value=0.045 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|+|++|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 366
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.64 E-value=0.033 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|..|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 367
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.62 E-value=0.04 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|..|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 368
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.62 E-value=0.03 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.-|.|+|.+|+|||||.+.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999875
No 369
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.61 E-value=0.045 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36888899999999999987765
No 370
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.59 E-value=0.024 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999888653
No 371
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.58 E-value=0.028 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999988764
No 372
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.58 E-value=0.04 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 373
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.58 E-value=0.04 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988754
No 374
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.56 E-value=0.034 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHHh
Q 043252 218 VIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999775
No 375
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.56 E-value=0.041 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 376
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.54 E-value=0.23 Score=41.86 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred EEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhC---C--------CC----CCCCCHH
Q 043252 219 IPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIAS---D--------QN----VDNHDLN 283 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~---~--------~~----~~~~~~~ 283 (337)
+.|+|+.|.|||.+|..+.... . ...+++ ++. ..+..++.+.+.. . .. ....+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998776542 1 123333 222 1233334333322 1 00 0001223
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEE
Q 043252 284 KLQEELKKQLFGKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVT 332 (337)
Q Consensus 284 ~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 332 (337)
.+..... .+..+--+||+|++.......+..+...++ ...++++|
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LS 225 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLT 225 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEe
Confidence 3433333 333445599999998765566777766554 23345555
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.53 E-value=0.03 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999975
No 378
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.51 E-value=0.042 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|..|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998764
No 379
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.51 E-value=0.077 Score=49.38 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=50.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhccccccc--ccceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC-----CCCC-HH----
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDH--FDLKAWTCVSDDF-DVIRLTKSILLSIASDQNV-----DNHD-LN---- 283 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~-----~~~~-~~---- 283 (337)
.-++|.|..|+|||+|+..+.++...... =+.++++-+.+.. .+.+++.++...=...... .... ..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 36778899999999999999876443111 0245566665543 3456666665431111000 1111 11
Q ss_pred -HHHHHHHHHc---CCCeEEEEEeCC
Q 043252 284 -KLQEELKKQL---FGKKFLLVLDDV 305 (337)
Q Consensus 284 -~~~~~l~~~L---~~kr~LlVlDdv 305 (337)
...-.+.+++ +++..||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122233343 379999999998
No 380
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.49 E-value=0.042 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999888754
No 381
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.48 E-value=0.031 Score=44.41 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.47 E-value=0.048 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998875
No 383
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.47 E-value=0.043 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.46 E-value=0.043 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998754
No 385
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.44 E-value=0.04 Score=48.43 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988864
No 386
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.44 E-value=0.046 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999998875
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.43 E-value=0.044 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 388
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.43 E-value=0.057 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999863
No 389
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.43 E-value=0.044 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
--|.|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988764
No 390
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.43 E-value=0.044 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999988864
No 391
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.43 E-value=0.05 Score=43.33 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999988753
No 392
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.40 E-value=0.24 Score=49.48 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHH
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
..+.+...+... .++.|+|+.|.||||++..+.
T Consensus 98 q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 345556666432 389999999999999665553
No 393
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.39 E-value=0.06 Score=42.24 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 394
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.38 E-value=0.044 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=19.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..-|.|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999987765
No 395
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.38 E-value=0.035 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHH
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~ 237 (337)
...-|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999885
No 396
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.36 E-value=0.14 Score=42.49 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.046 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988764
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.35 E-value=0.045 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4899999999999999999975
No 399
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.32 E-value=0.086 Score=49.51 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHH-HHHHhcccc----ccccc-ceEEEEeCCCC-CHHHHHHHHHHHhh
Q 043252 200 EIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKQV----EDHFD-LKAWTCVSDDF-DVIRLTKSILLSIA 272 (337)
Q Consensus 200 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~ 272 (337)
+.++.|..-. .-.-++|+|..|+|||+|| ..+.+.... .++-+ .++++-+.+.. .+.++..++...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566665322 2236899999999999995 566664221 11234 35677777644 34455555554211
Q ss_pred CCCC-----CCCCC-HHH-----HHHHHHHHc--CCCeEEEEEeCCC
Q 043252 273 SDQN-----VDNHD-LNK-----LQEELKKQL--FGKKFLLVLDDVW 306 (337)
Q Consensus 273 ~~~~-----~~~~~-~~~-----~~~~l~~~L--~~kr~LlVlDdv~ 306 (337)
.... ..... ... ..-.+.+++ +++..||++||+.
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0000 01111 111 111233333 5899999999993
No 400
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.048 Score=43.28 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 401
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.29 E-value=0.061 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999998764
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.29 E-value=0.072 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 403
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.28 E-value=0.047 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.048 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 405
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.26 E-value=0.048 Score=44.51 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999988764
No 406
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.26 E-value=0.052 Score=43.92 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.....|.|+|..|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999998764
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.25 E-value=0.027 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999974
No 408
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.24 E-value=0.1 Score=44.85 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 199 KEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 199 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-+..||.... +....|.++|++|.|||.+|..+.+.
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44667775321 23457999999999999999999874
No 409
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.23 E-value=0.05 Score=44.33 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.049 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.048 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998764
No 412
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.21 E-value=0.33 Score=43.18 Aligned_cols=96 Identities=16% Similarity=0.008 Sum_probs=57.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH-HcC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKK-QLF 294 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~-~L~ 294 (337)
.++..++|+.|.||++.++.+..... ...|+....+.+....+. ..+.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------------~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW----------------------NAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH----------------------HHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH----------------------HHHHHHhcCcCCc
Confidence 45899999999999999988866321 122322111222222333 333332222 123
Q ss_pred CCeEEEEEeCCCC-CChhcHHHhhccCCCCCCCcEEEEEec
Q 043252 295 GKKFLLVLDDVWN-ENYTDWVHLSLPFQAGAQGSKIIVTTR 334 (337)
Q Consensus 295 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTR 334 (337)
+++-++|+|++.. .....++.|...+.....++.+|++|-
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 5667888899866 444677778777765556777776663
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.21 E-value=0.081 Score=46.51 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 197 EKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 197 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++++..++. -.+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 3566666663 238999999999999999999763
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.19 E-value=0.059 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999988853
No 415
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.18 E-value=0.05 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999998764
No 416
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.15 E-value=0.052 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.14 E-value=0.051 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999875
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.13 E-value=0.049 Score=43.61 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997643
No 419
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.13 E-value=0.073 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...-|.|+|..|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999988754
No 420
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.12 E-value=0.053 Score=43.71 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 421
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.11 E-value=0.14 Score=43.35 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.11 E-value=0.053 Score=43.87 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.08 E-value=0.053 Score=43.75 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988754
No 424
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.07 E-value=0.13 Score=47.69 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHhcCCCC-----CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 193 GRETEKKEIVELLLKDDSR-----NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 193 Gr~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
|.++-++.|.+.+...... .......|+|+|.+|+|||||.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 5567777777777532210 1234568999999999999999999765
No 425
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.07 E-value=0.054 Score=43.71 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..--|.|+|..|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.04 E-value=0.053 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 427
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.04 E-value=0.091 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
-.+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999998875
No 428
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.02 E-value=0.053 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
No 429
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.02 E-value=0.056 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988764
No 430
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.00 E-value=0.061 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999998764
No 431
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.98 E-value=0.036 Score=44.23 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988743
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.97 E-value=0.089 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..+++|+|+.|+|||||.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 45999999999999999999986
No 433
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.96 E-value=0.065 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.++|++|.||||+|+.+...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.96 E-value=0.057 Score=43.95 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.95 E-value=0.057 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988754
No 436
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.94 E-value=0.049 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.92 E-value=0.057 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 438
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.058 Score=43.40 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 439
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.92 E-value=0.085 Score=42.56 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999999865
No 440
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.90 E-value=0.12 Score=43.48 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=30.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHH
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSI 267 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 267 (337)
-.++.|.|.+|+|||+||..+..+. ....-..+++++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 3589999999999999997765321 112223455555443 455555544
No 441
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.89 E-value=0.056 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999988753
No 442
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.88 E-value=0.05 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998653
No 443
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.87 E-value=0.065 Score=47.28 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 213 DGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 213 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345789999999999999999998764
No 444
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.87 E-value=0.054 Score=50.01 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHh
Q 043252 219 IPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~ 238 (337)
++|+|+.|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999975
No 445
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.87 E-value=0.16 Score=42.24 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..|.|.|+.|+||||+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999999875
No 446
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.87 E-value=0.059 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4779999999999999887653
No 447
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.86 E-value=0.057 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999998754
No 448
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.85 E-value=0.09 Score=49.31 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=46.8
Q ss_pred EEEEEEccCCCchHHHH-HHHHhccccccccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCCCCC-----
Q 043252 217 SVIPIIGMGGLGKTTLA-QLVYNDKQVEDHFD-LKAWTCVSDDF-DVIRLTKSILLSIASD-------QNVDNHD----- 281 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~-------~~~~~~~----- 281 (337)
.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++..++...=... ...+...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 36789999999999995 5777642 134 34666666643 2334444443321000 0001000
Q ss_pred ---HHHHHHHHHHHcCCCeEEEEEeCC
Q 043252 282 ---LNKLQEELKKQLFGKKFLLVLDDV 305 (337)
Q Consensus 282 ---~~~~~~~l~~~L~~kr~LlVlDdv 305 (337)
.-...+.++. +++..||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1123344444 599999999998
No 449
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.84 E-value=0.059 Score=44.72 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHh
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999988864
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.82 E-value=0.052 Score=43.96 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998754
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.087 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999998753
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.74 E-value=0.063 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 38999999999999999999864
No 453
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.063 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.051 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 48999999999999999999763
No 455
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.72 E-value=0.064 Score=44.96 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.|.+.|.||+||||+|-.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 35788999999999998777654
No 456
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.71 E-value=0.076 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.70 E-value=0.092 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998853
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.065 Score=43.25 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998764
No 459
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.66 E-value=0.039 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHhc
Q 043252 218 VIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 218 vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-|.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5889999999999999998764
No 460
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.65 E-value=0.081 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|+|+|..|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567899999999999999998864
No 461
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.64 E-value=0.045 Score=48.85 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=53.3
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
.+++|+|+.|+|||||++.+..-.. .-...+.+.-......... . ..+..- . . .-......+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~-g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLF-F-G--GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEE-C-B--TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEE-e-C--CChhHHHHHHHHhhhC
Confidence 3899999999999999999986421 1223444432211110000 0 000000 0 0 1112334566677777
Q ss_pred eEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 297 KFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
.=+|+||++... +.++.+. .+..+ +.-+|+||..
T Consensus 241 p~ilildE~~~~--e~~~~l~-~~~~g--~~tvi~t~H~ 274 (330)
T 2pt7_A 241 PDRIILGELRSS--EAYDFYN-VLCSG--HKGTLTTLHA 274 (330)
T ss_dssp CSEEEECCCCST--HHHHHHH-HHHTT--CCCEEEEEEC
T ss_pred CCEEEEcCCChH--HHHHHHH-HHhcC--CCEEEEEEcc
Confidence 778999999763 4454443 23221 2236777754
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.63 E-value=0.066 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 457899999999999999988754
No 463
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.62 E-value=0.066 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999888754
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.60 E-value=0.067 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999888754
No 465
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.60 E-value=0.067 Score=43.80 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.59 E-value=0.068 Score=53.74 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=37.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 188 EAKVYGRETEKKEIVELLLKDDSR-------NDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 188 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-..++|.+..++.|.+.+..+... .-.....+.++|++|+||||||+.+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 456788888888888776532110 1123456889999999999999999875
No 467
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.55 E-value=0.052 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 468999999999999999999864
No 468
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.55 E-value=0.069 Score=43.54 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.-|.|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 469
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.53 E-value=0.054 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHhcc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDK 240 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~ 240 (337)
--|.|+|..|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999987653
No 470
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.52 E-value=0.07 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...++|.|++|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 471
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.50 E-value=0.14 Score=44.99 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 198 KKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 198 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+++|.+.+..-.. .......|+|+|..|+|||||...+...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3445555432221 1345778999999999999999998764
No 472
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.49 E-value=0.078 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+|.|.|+.|+||||+++.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.46 E-value=0.072 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 474
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.43 E-value=0.16 Score=48.92 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
+...+|.|.|+.|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 475
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.42 E-value=0.093 Score=40.90 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 043252 217 SVIPIIGMGGLGKTTLAQLVY 237 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~ 237 (337)
.+..|+|+.|.|||||...++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999998875
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.39 E-value=0.082 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999998764
No 477
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.38 E-value=0.042 Score=43.84 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=10.5
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999888653
No 478
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.35 E-value=0.21 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
+++.|.|.+|.||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999877754
No 479
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.31 E-value=0.066 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHhc
Q 043252 219 IPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 219 i~I~G~gGiGKTtLa~~v~~~ 239 (337)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999864
No 480
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.29 E-value=0.076 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.28 E-value=0.095 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999975
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.25 E-value=0.077 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5999999999999999999875
No 483
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.24 E-value=0.07 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.780 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.24 E-value=0.075 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 485
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.23 E-value=0.12 Score=42.55 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCchHHHHHHHHh
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
...+|+|+|+.|+||+|+|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988755
No 486
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.23 E-value=0.078 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
-.+++|+|+.|+|||||.+.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 359999999999999999999875
No 487
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.20 E-value=0.077 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchHHHHHHHHh
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYN 238 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~ 238 (337)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4999999999999999999975
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.06 E-value=0.44 Score=53.76 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=45.4
Q ss_pred EEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHcCCC
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNVDNHDLNKLQEELKKQLFGK 296 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~L~~k 296 (337)
+-+.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+...+-..+.........-. .-.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~-------~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL-------LPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE-------EEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc-------cCCCCCc
Confidence 378899999999999997776532 122 23456777666666555444443321110000000 0001367
Q ss_pred eEEEEEeCCCC
Q 043252 297 KFLLVLDDVWN 307 (337)
Q Consensus 297 r~LlVlDdv~~ 307 (337)
+++|.+||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 88999999743
No 489
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.05 E-value=0.1 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.4
Q ss_pred CCcEEEEEEccCCCchHHHHHHH
Q 043252 214 GGFSVIPIIGMGGLGKTTLAQLV 236 (337)
Q Consensus 214 ~~~~vi~I~G~gGiGKTtLa~~v 236 (337)
.+..-|.|.|.||+||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34567899999999999999875
No 490
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.01 E-value=0.09 Score=49.75 Aligned_cols=45 Identities=9% Similarity=-0.103 Sum_probs=30.0
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 191 VYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 191 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+.|.+-.+.+.+... + ..+...+|.+.|+.|+||||+|+.+...
T Consensus 374 ~f~rpeV~~vLr~~~~-~---~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 374 WFSYPEVVKILRESNP-P---RPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTSCHHHHHHHHHHSC-C---GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcc-c---ccccceEEEecccCCCCHHHHHHHHHHH
Confidence 3445444444544431 1 1124578999999999999999999875
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.00 E-value=0.075 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=18.4
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.99 E-value=0.11 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
...+|.|.|+.|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 493
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.96 E-value=0.21 Score=42.88 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|.++|..|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 494
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.94 E-value=0.18 Score=41.84 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=49.1
Q ss_pred cEEEEEEccCCCchHHHHHHHHhcccccccccceEEEEeCCCCCHHHHHHHHHHHhhCCCCC-CCCCHHHHHHHHHHHcC
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYNDKQVEDHFDLKAWTCVSDDFDVIRLTKSILLSIASDQNV-DNHDLNKLQEELKKQLF 294 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~L~ 294 (337)
-.+..++|..|.||||.+......... ....+.++ .... +.+.-...+++.++..... ...+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~-k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVF-KPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEE-ECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEE-Eecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 468889999999999988655543222 22233332 2111 1111112233333221110 111111 2333333
Q ss_pred CCeEEEEEeCCCCCChhcHHHhhccCCCCCCCcEEEEEecC
Q 043252 295 GKKFLLVLDDVWNENYTDWVHLSLPFQAGAQGSKIIVTTRN 335 (337)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 335 (337)
++-=+|++|.+..-+.+..+.+. .+.+ .|-.||+|-++
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLD 137 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECS
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecc
Confidence 33339999999665434443333 2222 36689998774
No 495
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.85 E-value=0.22 Score=42.56 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|+|+|..|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 496
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.85 E-value=0.7 Score=43.28 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccCCCchHHHH-HHHHhccccccccc-ceEEEEeCCCC-CHHHHHHHHHHHhhCCCCC
Q 043252 201 IVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKQVEDHFD-LKAWTCVSDDF-DVIRLTKSILLSIASDQNV 277 (337)
Q Consensus 201 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~~~~~il~~~~~~~~~ 277 (337)
.++.|..-. .-.-++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+.. .+.++..++.+.=......
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 152 AVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 555555322 2236789999999999996 566663 1233 35677777654 3445666554431111100
Q ss_pred -----CCCCH-H---------HHHHHHHHHcCCCeEEEEEeCC
Q 043252 278 -----DNHDL-N---------KLQEELKKQLFGKKFLLVLDDV 305 (337)
Q Consensus 278 -----~~~~~-~---------~~~~~l~~~L~~kr~LlVlDdv 305 (337)
..... . ...+.++. +++..||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 11111 1 12333443 689999999999
No 497
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.84 E-value=0.061 Score=43.22 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCchHHHHHHHHhc
Q 043252 216 FSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 216 ~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
..-|.|+|.+|+|||||...+...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998643
No 498
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.83 E-value=0.41 Score=43.60 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=31.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCchHHHHHHHHhc
Q 043252 190 KVYGRETEKKEIVELLLKDDSRNDGGFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 190 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.++|....+.++.+.+..-.. .... |.|.|..|+|||++|+.++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 356666666666665543221 1233 489999999999999999864
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.81 E-value=0.09 Score=51.00 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchHHHHHHHHhc
Q 043252 217 SVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 217 ~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
.+++|+|+.|+|||||.+.++.-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 500
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.77 E-value=0.12 Score=44.11 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCchHHHHHHHHhc
Q 043252 215 GFSVIPIIGMGGLGKTTLAQLVYND 239 (337)
Q Consensus 215 ~~~vi~I~G~gGiGKTtLa~~v~~~ 239 (337)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999988754
Done!