BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043253
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 34.7 bits (78), Expect = 0.043, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVK--GEFDPPKLAEAITKRLGKFVEIV 183
M C CA I++ IA++ GV + + + + Q V GE P L +A+ +R G ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV-ERAGYHARVL 70
Query: 184 KEE 186
K++
Sbjct: 71 KQQ 73
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 33.5 bits (75), Expect = 0.097, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVK--GEFDPPKLAEAITKRLGKFVEIV 183
M C CA I++ IA++ GV + + + + Q V GE P L +A+ +R G ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV-ERAGYHARVL 70
Query: 184 K 184
K
Sbjct: 71 K 71
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
M C C + K + ++ GV VE + K + V+G DP L +A+
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAV 55
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 37 MHCDGCATKVAHCLHGFDGVEKVKLDRANNKVIVSGEKAEPSKVIERI 84
M C+ C V L GVEKV++ + +V G A+P +++ +
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAV 55
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVK--GEFDPPKLAEAITK 174
M C CA I++ IA++ GV + + + + Q V GE P L +A+ +
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAITKRL------GKF 179
MHC+ C +I++NI ++ GV +++ + VK +DP + +R G F
Sbjct: 29 MHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK--YDPSCTSPVALQRAIEALPPGNF 86
Query: 180 VEIVKEEAAKSKKNHK 195
+ + A S +H+
Sbjct: 87 KVSLPDGAEGSGTDHR 102
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 128 CEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAITK 174
EG R I++ + G+ T E D K Q++ G FDP KL E +T+
Sbjct: 437 AEGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTE 482
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
MHCE C DIK + + G+ ++ D+ + ++V+ P + +
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 61
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 37 MHCDGCATKVAHCLHGFDGVEKVKLDRANNKVIVSGEKAEPSKVIERIR 85
MHC+ C + CL G+ + D + V A PS +I +R
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVA-PSTIINTLR 62
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 128 CEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAITK 174
EG R I++ + G+ T E D K Q++ G FDP KL E +T+
Sbjct: 401 AEGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTE 446
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 30.4 bits (67), Expect = 0.77, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 128 CEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
CE CA + K + D TV+ D++ +VT+ +L AI
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAI 56
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEA 171
+ C CA ++N+ I+GV + S++TV GE ++ +A
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQA 57
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAE-AITKRLG 177
M C CA I++ + R+ GV ++ ++TV +DP +++E I +R+
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVT--YDPKQVSEITIQERIA 62
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 128 CEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
CE CA + K + D TV+ D++ +VT+ +L AI
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAI 56
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 128 CEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
CE CA + K + D TV+ D++ +VT+ +L AI
Sbjct: 11 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAI 55
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 178 KFVEIVKEEAAKSKKNHKKDNENNMMHYPPQ---HPFNKNFYSCLSDEAI 224
+ VEI+K S++ K N N M H PQ HPF+K F +AI
Sbjct: 250 QLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAI 299
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
M C CA + K + D TV+ D++ +VT+ +L AI
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAI 55
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
Length = 165
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 147 TVEPDMSKSQVTVKGEFDPPKLAEAITKRLGKFVEIVK 184
T +P +S+ + G P ++ E ITK+L K +E+VK
Sbjct: 40 TEDPTLSRXTLVTNG---PDEIVEQITKQLNKLIEVVK 74
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain Of
Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVK---GEFDPPKLAEAITKRLG 177
M C C +I++N+ R +G+ ++ + + V+ PP +AE I + LG
Sbjct: 12 MTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFI-RELG 65
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDP 165
M C CA I+K + +I+GV + + VTV E++P
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNP 49
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDP 165
M C CA I+K + +I+GV + + VTV E++P
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNP 49
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDP 165
M C CA I+K + +I+GV + + VTV E++P
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNP 120
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDP 165
M C CA I+K + +I+GV + + VTV E++P
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNP 120
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLA 169
M C+ C + ++ ++ +DGV V ++ +V V FD K++
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVS--FDADKVS 52
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 126 MHCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLA 169
M C+ C + ++ ++ +DGV V ++ +V V FD K++
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVS--FDADKVS 52
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 127 HCEGCARDIKKNIARIDGVLTVEPDMSKSQVTVKGEFDPPKLAEAI 172
HCE C DIK + + G+ ++ D+ + +V+ P + +
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTL 60
>pdb|3MHH|C Chain C, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|C Chain C, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|3M99|B Chain B, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
pdb|4FJC|C Chain C, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|G Chain G, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FK5|C Chain C, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 99
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 125 YMHCEGCARDIKKN 138
Y+HCE C RD+ N
Sbjct: 70 YIHCENCGRDVSAN 83
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 33 LQVYMHCDGCATKVAHCLHGFDGVEKVKLDRANNKVIVSGE 73
V M C GCA V+ L+ GV K +D N KV + E
Sbjct: 6 FSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE 45
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 33 LQVYMHCDGCATKVAHCLHGFDGVEKVKLDRANNKVIVSGE 73
V M C GCA V+ L+ GV K +D N KV + E
Sbjct: 5 FSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,527,140
Number of Sequences: 62578
Number of extensions: 243468
Number of successful extensions: 565
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 72
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)