BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043255
(1843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And
Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 1789 GVEECPICYSVIHTAN---HSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842
G CPIC IHT+ H LP C H H C + ++ CPLC P
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLP------CGHLLHRTCYEEMLKEGYR--CPLCSGP 52
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 37.7 bits (86), Expect = 0.056, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 1792 ECPICYSVIHTANHS--LPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
EC +C + + + LPR C H FH+ C+ W SH S+CPLC+
Sbjct: 7 ECAVCLAELEDGEEARFLPR-----CGHGFHAECVDMWLG-SH-STCPLCR 50
>pdb|2CT0|A Chain A, Solution Structure Of The Ring Domain Of The Non-Smc Element
1 Protein
Length = 74
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839
+ V+ C IC+S++ +C+TC + H C+ K+F ++ + CP C
Sbjct: 13 DAVKICNICHSLLIQGQ------SCETCGIRMHLPCVAKYFQSNAEPRCPHC 58
>pdb|3NW0|A Chain A, Crystal Structure Of Mageg1 And Nse1 Complex
Length = 238
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 1754 QRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACK 1813
Q KWL+ A+ E + + + + V+ C IC+S++ + +C+
Sbjct: 147 QNKWLIEKEGEFTLHGRAILEMEQYIRETYP---DAVKICNICHSLL------IQGQSCE 197
Query: 1814 TCKHKFHSACLYKWFSTSHKSSCPLC 1839
TC + H C+ K+F ++ + CP C
Sbjct: 198 TCGIRMHLPCVAKYFQSNAEPRCPHC 223
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 1791 EECPICYSVIHTAN---HSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839
+ CPIC IHT+ H LP C H H C + ++ CPLC
Sbjct: 6 QNCPICLEDIHTSRVVAHVLP------CGHLLHRTCYEEMLKEGYR--CPLC 49
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 1792 ECPICYS--VIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
ECP+C + + LP C H FH +C+ W SCP+C+
Sbjct: 17 ECPVCKEDYALGESVRQLP------CNHLFHDSCIVPWL--EQHDSCPVCR 59
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 1793 CPICYS--VIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
CPIC S V LP C H FH C+ W S +CP+C+ F
Sbjct: 43 CPICCSEYVKGDVATELP------CHHYFHKPCVSIWLQKS--GTCPVCRCMF 87
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 1815 CKHKFHSACLYKWFSTSHKSSCPLCQSP 1842
CKH FH CL KW + CPLC P
Sbjct: 36 CKHAFHRKCLIKWLEV--RKVCPLCNMP 61
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWF-STSH 1832
E I+ + FD E ECPIC + A + C H+F AC+ K H
Sbjct: 9 EEIQGYDVEFDPPLESKYECPICLMALREAVQT-------PCGHRFCKACIIKSIRDAGH 61
Query: 1833 KSSCPL 1838
K CP+
Sbjct: 62 K--CPV 65
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 821 WEYSMATVLDD---TLDDESMKKINARL-NVCKSVHVFRSKINNGFWRSLNIDNRKKLWS 876
W YS V+ D E + I ++ +V S H + K + G W L D RKK
Sbjct: 265 WAYS--AVVGDLGVKFSPEGIASITRKIPHVLMSSHKLQVKNSEGKWAELTGDERKKALD 322
Query: 877 ILIRSVTNAIFKEHNMKSDKLVS 899
L +S+ + +H+ K+DKL++
Sbjct: 323 TL-KSMKSISLDDHDAKTDKLIA 344
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWF-STSH 1832
E I+ + FD E ECPIC + A + C H+F AC+ K H
Sbjct: 2 EEIQGYDVEFDPPLESKYECPICLMALREAVQT-------PCGHRFCKACIIKSIRDAGH 54
Query: 1833 KSSCPL 1838
K CP+
Sbjct: 55 K--CPV 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWF-STSH 1832
E I+ + FD E ECPIC + A + C H+F AC+ K H
Sbjct: 2 EEIQGYDVEFDPPLESKYECPICLMALREAVQT-------PCGHRFCKACIIKSIRDAGH 54
Query: 1833 KSSCPL 1838
K CP+
Sbjct: 55 K--CPV 58
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human Cellular
Modulator Of Immune Recognition Protein
Length = 80
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
C IC+ + + C H H ACL +W +S C LC+ F
Sbjct: 18 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box
Protein 2
Length = 81
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 1815 CKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C H FH+ C+ W +++ CPLCQ
Sbjct: 48 CNHSFHNCCMSLWVKQNNR--CPLCQ 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 1785 KEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
K+ EEC IC A+ LP C H F C+ KW S H+ +CP+C+
Sbjct: 10 KQLTDEEECCICMD--GRADLILP------CAHSFCQKCIDKW-SDRHR-NCPICR 55
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWF----STSHKSSCPLCQSPF 1843
CPIC + L C H F AC+ + +T K +CP+C+ P+
Sbjct: 22 CPICLEL-------LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>pdb|1RH1|A Chain A, Crystal Structure Of The Cytotoxic Bacterial Protein Colicin
B At 2.5 A Resolution
Length = 511
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 1706 VSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRK 1756
+S++ N V A YT D+I+R P + P+ + + L + + QR+
Sbjct: 248 ISETGNYVEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVEILDSNSLSQRQ 298
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
+C IC S++ + RL C H FH C+ +W T+ K CP+C+
Sbjct: 16 KCTICLSILEEGE-DVRRLPCM---HLFHQVCVDQWLITNKK--CPICR 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,374,662
Number of Sequences: 62578
Number of extensions: 1804321
Number of successful extensions: 3734
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3729
Number of HSP's gapped (non-prelim): 21
length of query: 1843
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1730
effective length of database: 7,902,023
effective search space: 13670499790
effective search space used: 13670499790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)