BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043255
(1843 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana
GN=At5g58410 PE=3 SV=1
Length = 1873
Score = 1880 bits (4871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1869 (53%), Positives = 1320/1869 (70%), Gaps = 83/1869 (4%)
Query: 3 DIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSR 62
D+DSEVAQHL+RL+RKDP TK+KAL+SLS L+K+K GK++ PIIPQW FEYK+L+LDYSR
Sbjct: 58 DLDSEVAQHLQRLSRKDPTTKIKALASLSELVKQKQGKELLPIIPQWTFEYKKLILDYSR 117
Query: 63 EVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ-------- 114
+VRRATH++MT++V GRD+APHLKS+MGPWWFSQFD SEVSQAAK S Q
Sbjct: 118 DVRRATHDVMTNVVTGAGRDIAPHLKSIMGPWWFSQFDLASEVSQAAKSSFQVGSSFGNS 177
Query: 115 -----AAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169
AAFPAQEKRL AL +C+ E+F YLEENLKLTPQNLSDK++A DELEEM+QQ+ISS
Sbjct: 178 VFLVEAAFPAQEKRLHALNLCSAEIFAYLEENLKLTPQNLSDKSLASDELEEMYQQMISS 237
Query: 170 SLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQ 229
SL+ LATLLD+L+ E G NI +E K ASKARA+A S +EK+FS HK FL+FLKS+
Sbjct: 238 SLVGLATLLDILLREP-DNTGSANINSESKLASKARAVATSSAEKMFSSHKCFLNFLKSE 296
Query: 230 SVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289
S SIRSATYS+L S+IKN+P VF EG+++ +A A+LG F+E +P CHSSMW+A+LL SK+
Sbjct: 297 SPSIRSATYSLLSSFIKNVPEVFGEGDVRSLAPALLGVFRENNPTCHSSMWEAVLLFSKK 356
Query: 290 FPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFN 349
FP W LN K++LN W FL+NGC+GS QVSYPAL+LFL+V+P ++V +DKFF +FF
Sbjct: 357 FPQSWVYLNVHKSVLNHLWQFLRNGCYGSPQVSYPALILFLEVMPAQSVESDKFFVNFFK 416
Query: 350 SLWAGRNEPHSSNSDHKAFFRAFKECFLWGLLNASRYFDGVDSIFHFRVALVDDILLKLL 409
+L AGR+ SS++D + RA ECFLWGL NASRY D +SI +V L+D +L+K+L
Sbjct: 417 NLLAGRSMCESSSTDQLSLLRATTECFLWGLRNASRYCDVPNSIHDLQVDLIDKVLVKIL 476
Query: 410 WQDYLFFGCSKGQNSQVSRMSKNPPEDGNLPSNVKKS-DTLNMKYPKSYFQELGKCIVEI 468
W D+ + +SK G++P N +KS + L M SY QELG+CI+EI
Sbjct: 477 WADF-------------TELSK-----GSIPPNQRKSAENLGMGNSVSYLQELGRCILEI 518
Query: 469 LSGIYLLEHDLLSSFCTTFHETCLQVVQQKE-NLGLFSEEQIIKFLSLLEQHAIQKGEDW 527
LSGI LLE +LLS FC E+ L ++QQ + + S ++I FL LLE++++ +GE W
Sbjct: 519 LSGINLLEQNLLSFFCKAVQESFLNMLQQGDLEIVAGSMRKMIDFLLLLERYSVLEGESW 578
Query: 528 PLVYLVGPMLAKAFPMIKSLDSVNGIRLLSVSISVFGPRKIVREL--------FITDDGD 579
PL +GP+L+KAFP I+S + ++G++LLSVS+SVFGPRK+V L ++ + +
Sbjct: 579 PLHQFMGPLLSKAFPWIRSSELLDGVKLLSVSVSVFGPRKVVPVLIDDIETSTLLSVEKE 638
Query: 580 QMVDSGSFLQVFKETFVPWCLDGYNHSMSSRLDLLLTLLDEECFLDQWCAVMSYAANVKH 639
+ + ++VF+E F+PWC+DGY+ S ++R DLL +LLD+ECF QW V+SY N +H
Sbjct: 639 KNMSPEKLIKVFQEIFIPWCMDGYDSSTAARQDLLFSLLDDECFTQQWSDVISYVFNQQH 698
Query: 640 SGVEPGSLEPSHVLVLAMLLEKLRDKITKPKVGEHSTNWQGSHLDHLHHELLDSIAVAVA 699
G +++ + MLLEK RD+ITK G+ GS +H HH L++S A+++
Sbjct: 699 QGF-------NNLAAMKMLLEKARDEITKRSSGQELNQRIGSRPEHWHHTLIESTAISLV 751
Query: 700 CSFPPFGTSDARLMRALLGGSTEGNQVSFVSTNILIMIFKELLKKLVPFLGESSFTWVRD 759
S TS + + ++LGGST+ + +SFVS + L++I++ +L+KL+ F+ +S V D
Sbjct: 752 HSSSATTTSAVQFLCSVLGGSTQDSSISFVSRSSLVLIYRGILEKLLSFIKQSPLCSVND 811
Query: 760 ASSLLTSEAKDFRFEIGKSVNVIEMAQFALDILDGSFFCLKRIDDESSLLSSISAALFII 819
S L EA F+ SV+VI +A+FA +++DGSFF LK + +++LL+++ +++FII
Sbjct: 812 TCSSLIVEA--IAFDSSSSVDVIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFII 869
Query: 820 DWEYSMATVLDDTLDDESMKKINARLNVCKSVHVFRSKINNGFWRSLNIDNRKKLWSILI 879
D E M +++D+TL ES +K R VC VH SK++N FW+S+N D RK S L
Sbjct: 870 DLENRMTSLVDNTLS-ESKEKRKDRNFVCDYVHAVCSKMDNQFWKSINYDVRKSSASTLA 928
Query: 880 RSVTNAIFKEHNMKSDKLVSLCYSWMVEILEYLSQNPYEEQNLLDQLLSGDATWPLWINP 939
+ + + + E +++ +L LC S M E+LEYLS + +E+N+ LL WP+W++P
Sbjct: 929 QFLRSVVLLEDDLQPFELTLLCASRMTEVLEYLSLDQSDEENICGLLLLESDAWPIWVSP 988
Query: 940 NLSTPKESDALNTPNESLNIHVSGHHRFVSLIDKIISKAGLQKVVAGHVTHACPSPPEET 999
S+ D P + + S R+VS ID +I K G+ + + GH H
Sbjct: 989 --SSSASIDTHGMPVQLCELRKSKSQRYVSFIDSLIMKLGIHRFIVGHKDHG-------- 1038
Query: 1000 INEVPSRAWLAAEVLCTWKWPGGNALDSFLPLLCSHAKSRNLASQQNLLDSIFDILLDGA 1059
S+AWL+ E+LCTW+WPGG SFLP L S K S LL+SIFDILL+GA
Sbjct: 1039 ---FASQAWLSVEILCTWEWPGGKVQTSFLPNLVSFCKDE--PSSGGLLNSIFDILLNGA 1093
Query: 1060 LVHGGNSSQSLFDIWPPLDDKVELIEEHFLRALVSLLVTLLKNDIWERDKAMILFDLLVN 1119
LVH + + L ++W ++ + + E FLRALVS L L K D+W ++AM F ++ +
Sbjct: 1094 LVHVKDEEEGLGNMWVDFNNNIVDVVEPFLRALVSFLHILFKEDLWGEEEAMAAFKMITD 1153
Query: 1120 KLFVGEAINKNCLRILPPIITVLVRTLSYRSVGSNEYGRGVDSDTSEGNQVQDTIRGWLQ 1179
KLF+GE +KNCLRI+P I+++++ L + V S G+ DT +V +R WL+
Sbjct: 1154 KLFIGEETSKNCLRIIPYIMSIIISPLRTK-VKSGGSGK----DTLLPLEV--LLRNWLE 1206
Query: 1180 RTLLFPPLVTWQSGEDMEEWFQLVISCYPLSATGGAELFKLERNISHDERTLLLDLFRKQ 1239
R+L FPPLV WQSGED+++WFQLVISCYP+S E +L+R++S +ERTLLLDLFRKQ
Sbjct: 1207 RSLSFPPLVLWQSGEDIQDWFQLVISCYPVS-DKAEEAKELQRHLSTEERTLLLDLFRKQ 1265
Query: 1240 RHGGG---IANQLPVVQVLLSQLMVISVGYCWKEFNEDDWSFVFSNLSSWIQSAVVIMEE 1296
+ G + QLP VQ+LL++L++I+V YC +FNEDDW FVFSNL IQSAVV+MEE
Sbjct: 1266 KQDPGASTVVTQLPAVQILLARLIMIAVSYCGNDFNEDDWDFVFSNLKRLIQSAVVVMEE 1325
Query: 1297 AAENVNDAIADSSS--SNNLDDIIEKLEKIVFISDPSPINNARNAILSFSLCHNILLCHG 1354
+ENVND I+ SS +D +E L IVFISDPS IN+A+NA+ +FSL + ++
Sbjct: 1326 TSENVNDFISGVSSMEKEKENDTLEGLGHIVFISDPS-INSAQNALSAFSLLNALVNHKS 1384
Query: 1355 AEDSDNSNPLRTERWDRVRNRIAEGILRLFFCTGICEAIASSYGLESALVIASSRLDHIC 1414
E DN L E WD V++RI EG+LRLFFCTG+ EAIA+SY E+A ++AS R+DH+
Sbjct: 1385 VEGEDNLKSLADETWDPVKDRILEGVLRLFFCTGLTEAIAASYSPEAASIVASFRVDHLQ 1444
Query: 1415 FWELVASSVVNSSPHVKDRAVKSVEFWGLRKGPISALYAILFSSKPIAPLQYAAFVVLSA 1474
FWELVA VV+SSP +DRAV++VEFWGL +G IS+LYAI+FSS PI LQ AA+ VLS
Sbjct: 1445 FWELVAHLVVDSSPRARDRAVRAVEFWGLSRGSISSLYAIMFSSNPIPSLQLAAYTVLST 1504
Query: 1475 DPVSQLAIFREDSVSSLGADSGVDQDMNCLDLSSEN-VHLQGEISCMIEKLPFQVVEMDL 1533
+P+S+LAI D + L +S DQD + L SE+ + L+ E+SCM+EKL ++++ DL
Sbjct: 1505 EPISRLAIV-ADLNAPLNDESLNDQDSSNAGLPSEDKLLLRDEVSCMVEKLDHELLDTDL 1563
Query: 1534 TAQEWVNVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSANTVILDCIFQHIPLELCEMQ 1593
TA E V FLAWSLLLS+++SLPSLT RERLVQYI +AN +ILD +FQHIPLEL Q
Sbjct: 1564 TAPERVQTFLAWSLLLSNVNSLPSLTQGRERLVQYIEKTANPLILDSLFQHIPLELYMGQ 1623
Query: 1594 DLKKKDGDLPAEVSAAATAAKHAITTGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLP 1653
LKKKDGD+P+E+S A+AA AI TGS L VESLWP++ K+ASLAGAIYGLML VLP
Sbjct: 1624 SLKKKDGDIPSELSVVASAATRAIITGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLP 1683
Query: 1654 AYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKANIADENFSLTVSKSANEV 1713
AYVR WFS++RDRS SSL+E+FTR WCSP LI NELSQIKKA+ DE+FS+++SK+ANEV
Sbjct: 1684 AYVREWFSEMRDRSASSLIEAFTRTWCSPSLIKNELSQIKKADFNDESFSVSISKAANEV 1743
Query: 1714 VATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALA 1773
VATYTKDET MDL+IRLP SYPL+PVDV C +S+GISE KQRKWLMSM +FVR+QNGALA
Sbjct: 1744 VATYTKDETGMDLVIRLPVSYPLKPVDVNCAKSIGISEAKQRKWLMSMQMFVRHQNGALA 1803
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHK 1833
EAIRIWKRN DKEFEGVE+CPICYSVIH NHSLPR AC TCK+KFH ACL KWF TS+K
Sbjct: 1804 EAIRIWKRNSDKEFEGVEDCPICYSVIHIGNHSLPRRACVTCKYKFHKACLDKWFYTSNK 1863
Query: 1834 SSCPLCQSP 1842
CPLCQSP
Sbjct: 1864 KLCPLCQSP 1872
>sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3
SV=1
Length = 1766
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 142/208 (68%), Gaps = 1/208 (0%)
Query: 1636 KLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKA 1695
++ LA ++Y + L LPA VR W++ R + ++V+ FT + S L + E+S ++ +
Sbjct: 1559 QIPHLACSVYHITLKDLPAMVRLWWNSCEKR-VFNVVDKFTSKYVSSVLSSQEISSVQTS 1617
Query: 1696 NIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQR 1755
++ +A EV+ATY+ D+ ++LII+LP++YPL + VE + +G++ + R
Sbjct: 1618 TQLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWR 1677
Query: 1756 KWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTC 1815
W++ + ++ +QNG++ E + +WK N DK FEG+E+C IC+SVIH +N+SLP+ AC+TC
Sbjct: 1678 NWMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTC 1737
Query: 1816 KHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
K KFHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1738 KKKFHSACLYKWFTSSNKSTCPLCRETF 1765
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 189/385 (49%), Gaps = 29/385 (7%)
Query: 4 IDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSRE 63
+D++ L++L+++D ITKLKA+ + KE+ + + ++P W Y ++ LD+ R
Sbjct: 61 VDADFRMVLRKLSKRDIITKLKAMQEFGTMCKEREAEVVKGVLPYWPRIYCKISLDHDRR 120
Query: 64 VRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKR 123
VR AT + L++ V + LAP+LKS+MG W +Q D+ S + AAK + + AFP+ K+
Sbjct: 121 VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKEAFEKAFPSS-KQ 179
Query: 124 LDALLICATEVFIYLEEN-LKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLV 182
+AL C E+ L+++ LK TP LSD +E E A +L
Sbjct: 180 PEALAFCKDEILNVLQDHLLKETPDTLSDPQTVPEEERE-------------AKFFRILT 226
Query: 183 CEHFGRPGFENITAEPKHASKARAIAVSFSEKLFS--DHKYFLDFLKSQSVSIRSATYSV 240
C + ++ PK S EKL S F + K + +RSA + +
Sbjct: 227 CSLLAL--KKLLSMLPKKEMH------SLEEKLMSLLSQNKFWKYGKHSTPQVRSAFFEL 278
Query: 241 LKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQ 300
++ + +P + + + A+L + + D V ++W+A+L DCW+ +NA+
Sbjct: 279 ASAFCQFLPELV-KAEAPRVCPAVLLSIDDSDAVVCPALWEAVLHAIATIEDCWSHVNAR 337
Query: 301 KTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAAD-KFFQDFFNSLWAGRNEPH 359
K +L + W L+ G G V YP ++ F+ VPP ++F+ FF+S+ G +
Sbjct: 338 KGVLPKLWTVLREGGRGLATVIYPNILPFISKVPPGITEPKLEYFRTFFSSIIQGLSNER 397
Query: 360 --SSNSDHKAFFRAFKECFLWGLLN 382
+S S+ A F EC + +L
Sbjct: 398 ALASPSESSAIITTFMECLRFAILQ 422
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 149/242 (61%), Gaps = 2/242 (0%)
Query: 1602 LPAEVSAAATAAKHAITTGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVRGWFS 1661
LP + S + T L V+ V ++ LA +Y + L LPA VR W++
Sbjct: 1456 LPGQASDMPSKEPKTFFTEELQLAVKGTATVQQ-EVPHLACCVYHMTLKDLPAMVRLWWN 1514
Query: 1662 DLRDRSISSLVESFTRVWCSPPLIANELSQIKKANIADENFSLTVSKSANEVVATYTKDE 1721
R I ++V+ FT + S L + E+S ++ + + ++ + EV+ATY+ D+
Sbjct: 1515 GCEKR-IFNVVDRFTTKYVSSVLSSQEISSVQLSTQVFDGMTVKARSTTREVIATYSVDD 1573
Query: 1722 TKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIRIWKR 1781
++LII+LP +YPL + VE R +G++ + R W++ + ++ +QNG++ E + +WK
Sbjct: 1574 ICIELIIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQLNTYLTHQNGSIMEGLALWKN 1633
Query: 1782 NFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
N DK FEGVE+C IC+SVIH +N+SLP+ AC+TCK KFHS CLYKWF++S+KS+CPLC+
Sbjct: 1634 NVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSECLYKWFTSSNKSTCPLCRE 1693
Query: 1842 PF 1843
F
Sbjct: 1694 TF 1695
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 180/353 (50%), Gaps = 27/353 (7%)
Query: 33 LLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMG 92
+ KE+ + + ++P W Y ++ LD R VR AT + L++ V + LAPHLKSLMG
Sbjct: 7 MCKEREMETVRGVLPYWPRIYCKISLDLDRRVREATQQAFEQLILKVKKYLAPHLKSLMG 66
Query: 93 PWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVF-IYLEENLKLTPQNLSD 151
W +Q D+ S + +A+ + +AAFPA K+ +AL C E+ + L+ LK TP LSD
Sbjct: 67 FWLIAQCDTYSPAASSARVAFEAAFPAH-KQPEALAFCKEEIMNVLLDHLLKETPDTLSD 125
Query: 152 -KAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVS 210
+A+ +++ E + +V++ SLLAL LL +L P EN + + + A
Sbjct: 126 TQAVPIEDRESKYFRVVTCSLLALKRLLCML-------PRSENSSLQERLA--------- 169
Query: 211 FSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQE 270
L S K F + K + SIRSA + ++ + + P V + A+L + +
Sbjct: 170 ---HLLSQSK-FWKYSKHSTSSIRSAFFELMSALCQCSPDVLR-AEASRLCPAVLLSIDD 224
Query: 271 KDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFL 330
D V ++W+A+L DCW +NAQK +L + W L+ G G V +P L+ F+
Sbjct: 225 SDAVVCPALWEAVLYTITTIEDCWEHVNAQKGVLPKLWSVLREGGRGLATVIFPNLLPFI 284
Query: 331 DVVPPKAVAA-DKFFQDFFNSLWAGRNEPH--SSNSDHKAFFRAFKECFLWGL 380
VP + F+ +FFNSL G + +S ++ A A+ EC + +
Sbjct: 285 SRVPTNIIKTPTDFYSNFFNSLGQGLSSERAVASPAECSAIISAYMECLRFAM 337
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 1634 PVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIK 1693
P + LA ++Y + L LPA VR W++ R + ++V+ FT + S L E+S ++
Sbjct: 1558 PYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKR-VFNIVDRFTSKYVSNVLSFQEISSVQ 1616
Query: 1694 KANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVK 1753
+ ++ + EV+ATYT ++ ++LII+LP++YPL + VE + +G++ +
Sbjct: 1617 TSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRIGVAVQQ 1676
Query: 1754 QRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACK 1813
R W++ + ++ +QNG++ E + +WK N DK FEGVE+C IC+SVIH N+SLP+ AC+
Sbjct: 1677 WRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACR 1736
Query: 1814 TCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
TCK KFHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1737 TCKKKFHSACLYKWFTSSNKSTCPLCRETF 1766
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 196/379 (51%), Gaps = 29/379 (7%)
Query: 4 IDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSRE 63
+DS+ L++L++KD TKLKA+ + E+ + + ++P W + ++ LD+ R
Sbjct: 61 VDSDFRMVLRKLSKKDVTTKLKAMQEFGIMCTERDTEAVKGVLPYWPRIFCKISLDHDRR 120
Query: 64 VRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKR 123
VR AT + L++ V + LAP+LKS+MG W +Q D+ + AAK + +AAFP K+
Sbjct: 121 VREATQQAFEKLILKVKKHLAPYLKSVMGYWLMAQCDTYPPAALAAKDAFEAAFPPS-KQ 179
Query: 124 LDALLICATEVFIYLEEN-LKLTPQNLSD-KAIALDELEEMHQQVISSSLLALATLLDVL 181
+A+ C E+ L+++ LK TP LSD + + +E E +V++ SLLAL LL L
Sbjct: 180 PEAIAFCKEEITTVLQDHLLKETPDTLSDPQTVPEEEREAKFHRVVTCSLLALKRLLCFL 239
Query: 182 VCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVL 241
P E + E K S L S +K F + K +RSA + ++
Sbjct: 240 -------PNNELDSLEEKFKS------------LLSQNK-FWKYGKHSVPQVRSAYFELV 279
Query: 242 KSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301
+ +++P V E K ++ ++L + + DPV ++W+A+L DCW +NA+K
Sbjct: 280 SALCQHVPQVMKEEAAK-VSPSVLLSIDDSDPVVCPALWEAVLYTLTTIEDCWFHVNAKK 338
Query: 302 TILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADK--FFQDFFNSLWAG--RNE 357
++ + ++ G G V YP L+ F+ + P+++ K FF++F SL G
Sbjct: 339 SVFPKLMAMIREGGRGLAAVMYPYLLPFISKL-PQSITEPKLDFFKNFLTSLVTGLSTER 397
Query: 358 PHSSNSDHKAFFRAFKECF 376
SS+S+ A AF EC
Sbjct: 398 TKSSSSECSAVISAFFECL 416
>sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1
SV=6
Length = 1766
Score = 190 bits (483), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 1634 PVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIK 1693
P + LA ++Y + L LPA VR W++ R + ++V+ FT + S L E+S ++
Sbjct: 1557 PYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKR-VFNIVDRFTSKYVSSVLSFQEISSVQ 1615
Query: 1694 KANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVK 1753
+ ++ + EV+ATYT ++ ++LII+LP++YPL + VE + +G++ +
Sbjct: 1616 TSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQ 1675
Query: 1754 QRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACK 1813
R W++ + ++ +QNG++ E + +WK N DK FEGVE+C IC+SVIH N+SLP+ AC+
Sbjct: 1676 WRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACR 1735
Query: 1814 TCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
TCK KFHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1736 TCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 196/379 (51%), Gaps = 29/379 (7%)
Query: 4 IDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSRE 63
+DS+ L++L++KD TKLKA+ + E+ + + ++P W + ++ LD+ R
Sbjct: 61 VDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRR 120
Query: 64 VRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKR 123
VR AT + L++ V + LAP+LKSLMG W +Q D+ + + AAK + +AAFP K+
Sbjct: 121 VREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPS-KQ 179
Query: 124 LDALLICATEVFIYLEENL-KLTPQNLSD-KAIALDELEEMHQQVISSSLLALATLLDVL 181
+A+ C E+ L+++L K TP LSD + + +E E +V++ SLLAL LL +
Sbjct: 180 PEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKRLLCL- 238
Query: 182 VCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVL 241
P E + E K S L S +K F + K IRSA + ++
Sbjct: 239 ------LPDNELDSLEEKFKS------------LLSQNK-FWKYGKHSVPQIRSAYFELV 279
Query: 242 KSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301
+ + IP + E K ++ ++L + + DP+ ++W+A+L DCW +NA+K
Sbjct: 280 SALCQRIPQLMKEEASK-VSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKK 338
Query: 302 TILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADK--FFQDFFNSLWAGRNEPH 359
++ + ++ G G V YP L+ F+ + P+++ K FF++F SL AG +
Sbjct: 339 SVFPKLSTVIREGGRGLATVIYPYLLPFISKL-PQSITNPKLDFFKNFLTSLVAGLSTER 397
Query: 360 SSNS--DHKAFFRAFKECF 376
+ S + A AF EC
Sbjct: 398 TKTSSLESSAVISAFFECL 416
>sp|Q555H8|LTN1_DICDI E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum
GN=rnf160 PE=3 SV=1
Length = 1864
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 127/196 (64%), Gaps = 8/196 (4%)
Query: 1652 LPAYVRGWFSDLRDRS-ISSLVESFTRVWCSPPLIANELSQIKK-----ANIADENFSLT 1705
LP+ VR W D S ++ ++S+ + SP +I NE+ ++ ++ +D F +
Sbjct: 1668 LPSMVRRWADDNSTNSKMNQQIQSYITRFISPIIIQNEIQRVNSYRCTDSDSSDAKFQIK 1727
Query: 1706 VSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFV 1765
S S+ EV A+Y KDE + L++ + +YPLR + VE + +G+SE + R+WL+SM +
Sbjct: 1728 GSTSSKEVTASYEKDEMTISLVLFISDNYPLRVLTVEFSKRVGVSESQWRQWLLSMTSLL 1787
Query: 1766 RNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLY 1825
Q+G + +A +WK + DK F+GVE CPICYS+ H N ++P+ CKTCK+KFH+ C+Y
Sbjct: 1788 LTQDGTVLDACLLWKNSLDKHFQGVEVCPICYSMFH--NGTIPKFQCKTCKNKFHAGCIY 1845
Query: 1826 KWFSTSHKSSCPLCQS 1841
KWF TSHKS+CPLCQ+
Sbjct: 1846 KWFQTSHKSNCPLCQT 1861
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 191/394 (48%), Gaps = 39/394 (9%)
Query: 19 DPITKLKALSSLSALLKEKSGKD-------IAPIIPQWAFEYKRLLLDYSREVRRATHEM 71
D I+++K L L++ ++ + +D I+P++ W F YKRL+ D R VR +
Sbjct: 69 DSISRIKGLEELNSKFQKINIEDAEFNISSISPLMNAWEFMYKRLVNDDDRNVRDLASQC 128
Query: 72 MTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICA 131
+ S+ +G+ L PH+K L+GPW + D N + A S Q FP ++KR D
Sbjct: 129 LGSIGSRIGKHLGPHVKQLLGPWIVAICDQNDQSINNALLSFQNIFP-EKKRKDVFKFGH 187
Query: 132 TEVFIYLEENLKLTPQNLSD-KAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPG 190
E YL ENL+ TPQ + D K+I+ + L+E +++ IS+SLLA+ L++
Sbjct: 188 DEALTYLCENLQETPQTIGDSKSISQEILQERYERCISNSLLAIEYLINNTTATATDSSS 247
Query: 191 FENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPH 250
+ T + + EK+F F +S+S +IR Y VL + IK +
Sbjct: 248 SSSTTTTTTTTNNTGNTEI--YEKIFESQF--FSFFQSKSSNIRKTAYRVLTTVIKKLAG 303
Query: 251 VFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPD-CWTVLNAQKTILNRFWH 309
+ E N K ++ +LG F EKD H MWDAI+ +++ D W+ ++ +K +L R W
Sbjct: 304 -YVEKNFKDFSSKVLGLFSEKDSSTHLYMWDAIISFLQQYGDKAWSNVDVRKHVLPRLWA 362
Query: 310 FLKNGCFGSQQVSYPALVLFLDVVPPKAVAADK---------------FFQDFFNSLWAG 354
FL++GC+GS ++SYP+++ L +P V FF++ F +L G
Sbjct: 363 FLRSGCYGSFELSYPSILPLLTFIPNSIVIGSPSPSPSPSPNTNIDIGFFKELFTNLEKG 422
Query: 355 ---------RNEPHSSNSDHKAFFRAFKECFLWG 379
P+S + + EC ++
Sbjct: 423 LEVVDNPRQYGNPNSVDRPSNLLLSCYLECLIYS 456
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 138/214 (64%), Gaps = 8/214 (3%)
Query: 1636 KLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKA 1695
++ LA IY L L + VR ++S++++R+ +S VESFT SP LI+ L ++++
Sbjct: 1396 RIRCLAIHIYYQCLRHLSSSVRSYWSEVKNRAFTSTVESFTGYNVSPLLISASLDDVERS 1455
Query: 1696 NIADENF------SLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGI 1749
I E+F ++ V+++ E+ Y DE K+++ I++P+ YPL+ V VE + +G+
Sbjct: 1456 -IESEDFQSVGDVNVKVNRNTREISFIYNVDEHKLEMAIKIPSVYPLQNVQVEGIERVGV 1514
Query: 1750 SEVKQRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPR 1809
+E + R W+++ + +QNG++ +A+ + K+N FEGVEEC ICYSV+ + +LP
Sbjct: 1515 NERQWRSWILASQSILSSQNGSITDALLVLKKNISMHFEGVEECAICYSVL-SVERTLPN 1573
Query: 1810 LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
C TC+HKFH++CLYKWF +S+ S CPLC+S F
Sbjct: 1574 KRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSSF 1607
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 14/185 (7%)
Query: 1 MQDIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDY 60
+ +D+E+ +K L ++D +TK +AL L + S D + A + RL ++
Sbjct: 46 LSGLDAEMIVIVKNLQKRDIVTKCRALQDLIQW-NDPSQFDNEQFLNALAVLFPRLSIEV 104
Query: 61 SREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQ 120
R VR M+ L + + LAP LK + PW FDS+ VS +AK S + +
Sbjct: 105 ERHVRLKIFVFMSVLSSALQKKLAPWLKFYITPWVMGFFDSDRAVSVSAKDSFKNLLSEE 164
Query: 121 E------KRLDALLICATEVFIYLEENLKLTPQNLSD-KAIALDELEEMHQQVISSSLLA 173
+ K + T+VF++ ++ ++L+D + + +E E +V SS LL
Sbjct: 165 KWPHVWLKFGSTIAPIVTDVFLHEDK------ESLTDLRFFSNEEAESKVTRVKSSCLLT 218
Query: 174 LATLL 178
L+ L
Sbjct: 219 LSFLF 223
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 119/191 (62%), Gaps = 6/191 (3%)
Query: 1659 WFSDLRDRSISSLVESFTRVWCSPPLIANEL----SQIKKANIADENFSLTVSKSANEVV 1714
W+ +++DR++ + +E F + SP LI NE S++ + D+ ++ ++ NEV
Sbjct: 1370 WWLNIKDRTLQNDIEKFVSEFISPILIKNEFDDINSKMDRLTSNDDALTIKLNNITNEVK 1429
Query: 1715 ATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALAE 1774
A+Y D+ K+++ +LP +YPL + V + +GISE K ++W+MS + NG++ +
Sbjct: 1430 ASYLIDDQKLEISFKLPKNYPLTNIQVNGVSRVGISEQKWKQWIMSTQHVITGMNGSVLD 1489
Query: 1775 AIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKS 1834
++ ++ +N +F G EEC ICYS++H + LP C TCK+KFH ACLYKWF +S +
Sbjct: 1490 SLELFTKNVHLQFSGFEECAICYSILHAVDRKLPSKTCPTCKNKFHGACLYKWFRSSGNN 1549
Query: 1835 SCPLCQS--PF 1843
+CPLC+S PF
Sbjct: 1550 TCPLCRSEIPF 1560
>sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans
GN=Y54E10A.11 PE=3 SV=1
Length = 1446
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 128/220 (58%), Gaps = 3/220 (1%)
Query: 1624 FPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPP 1683
+ +ES P+ A + + +LPA +R ++ + + + E+ T+ + S
Sbjct: 1229 YYLESDLSASPIFFDKFASRLLFKSMTLLPAAIRLFYKGMPNCFMPMFQETVTK-YASRL 1287
Query: 1684 LIANELSQIKKANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVEC 1743
LI EL ++++A E TV + E++A Y +ETKM L I LP YPL +
Sbjct: 1288 LIEQELGKVREAKFEGEMKVRTVPVTG-EIIAEYVVEETKMKLTIGLPPDYPLSVPSLTL 1346
Query: 1744 MRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTA 1803
+++ + + +KWL+ + ++ +QNGA+ E I +WKRN DK EGVE+C IC +H
Sbjct: 1347 DKAI-VKTDRAKKWLLQLNAYLFHQNGAILEGIEMWKRNVDKGVEGVEDCTICMMTVHQQ 1405
Query: 1804 NHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
H LP++ CK CK+KFHS CLYKWF +S++S+CPLC++ F
Sbjct: 1406 THQLPKIKCKQCKNKFHSNCLYKWFESSNQSTCPLCRNNF 1445
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 3 DIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSR 62
+ID E +K+L +KD T+ K L L L+ ++ I + +L D S
Sbjct: 53 EIDDETRIVMKKLTKKDCQTREKGLKELMELINTENS-SIESSYEHFCGLVAQLTTDGSP 111
Query: 63 EVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEK 122
VR T ++++ + + + + LK ++ F++ D + V+ AA ++ F A +K
Sbjct: 112 TVRMLTMKVISQFLTKLKKSASKGLKKIIPFVLFAKSDVTNGVAAAASAVIRDGFDADKK 171
Query: 123 R 123
R
Sbjct: 172 R 172
>sp|Q9VW09|LTN1_DROME E3 ubiquitin-protein ligase listerin OS=Drosophila melanogaster
GN=l(3)76BDr PE=1 SV=2
Length = 1747
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 2/207 (0%)
Query: 1637 LASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKAN 1696
L A +Y +L LPA VR W++ + R + +++ T + S + + EL I
Sbjct: 1543 LERYACHLYTEVLRKLPAVVRRWWNATQSRQ-KNFIDNLTTNYVSSLICSEELKAIANRK 1601
Query: 1697 IADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRK 1756
EN +TV S EV+A Y DE +M+L+I L +YPL V VEC + +G R
Sbjct: 1602 EKHENMQVTVHSSTREVLAVYAIDEARMELVITLAPNYPLGAVKVECGKQIG-GRASSRN 1660
Query: 1757 WLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCK 1816
M + +F+ +QNG + + + +WK N DK+FEGVEEC +CY+VIH LP+L CKTCK
Sbjct: 1661 VGMQLTIFLTHQNGTIYDGLTMWKNNLDKKFEGVEECYVCYTVIHQETCQLPKLTCKTCK 1720
Query: 1817 HKFHSACLYKWFSTSHKSSCPLCQSPF 1843
KFH CLYKWF+TS KS+CP+C++ F
Sbjct: 1721 KKFHGPCLYKWFTTSSKSTCPICRNVF 1747
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 186/411 (45%), Gaps = 32/411 (7%)
Query: 12 LKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEM 71
L++L++KDP+TK KAL L L+++ + + I+P W Y L D VR T +
Sbjct: 75 LRKLSKKDPMTKKKALQELHELIEQSDVEVLKNILPLWPKYYLNLASDPEHTVREQTQTV 134
Query: 72 MTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKR-LDALLIC 130
+ L+ + +AP+LK L+ W S+FD+ + + A +S + F R + + C
Sbjct: 135 LQLLMAKCKKAMAPYLKLLVPVWLGSRFDTYAPAASIASQSFRDTFAGNANRSREVCMHC 194
Query: 131 ATEVFIYLEENLKL-TPQNLS-DKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGR 188
E+ Y NL T LS K++ ++ E+ +Q+VI SSL L+ +
Sbjct: 195 QVEILEYATRNLTFHTAATLSIGKSLTPEDAEQKYQRVIISSLKLLSFFM---------- 244
Query: 189 PGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248
G T E + V+ H+ F F K + +I++A + + ++++
Sbjct: 245 -GQTAQTEELSQVKEGFGTLVA--------HQKFWSFAKHKVPAIKAAWFECIYHILQSV 295
Query: 249 PHVFNEGNLKIIATAILGAF-QEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRF 307
+ K T + F + DPV +W +LLL + D + LN +KT+L +
Sbjct: 296 ALLDVITPQKTQLTNLCFQFIDDADPVVAPHIWGCVLLLQSNYVDWFVPLNIRKTLLPKL 355
Query: 308 WHFLKNGCFGSQQVSYPALVLFLDVVPPKAVA---ADKFFQDFFNSL---WAGRNEPHSS 361
L+NG + Q P L+ FL V ++ F+Q FF+ + + +P S
Sbjct: 356 SSLLQNGFNRNAQAICPNLLPFLSKVTQASLQDLDIYDFYQRFFDDMKLAVTKKFDPPLS 415
Query: 362 NSDHKAFFRAFKEC--FLWGLLNASRYFDGVDSIFHFRVALVDDILLKLLW 410
SD A+ EC FL +N ++ + + F F + L +++L + W
Sbjct: 416 KSDCIVIHNAYFECLRFLMQQINNNKQREQKEEEFSFSL-LDNNVLEPIAW 465
>sp|B6IFN4|LTN1_CAEBR E3 ubiquitin-protein ligase listerin OS=Caenorhabditis briggsae
GN=CBG25264 PE=3 SV=1
Length = 1503
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 9/226 (3%)
Query: 1624 FPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPP 1683
+ ++S P+ A + + +LPA VR + ++ + E T+ S
Sbjct: 1280 YYLQSDLTASPLFFEKFASRLLFKSITLLPAAVRLFHKNIPNNFKPIFQEVVTK-HASKL 1338
Query: 1684 LIANELSQIKKANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVEC 1743
LI NEL++++ A E + ++++ YT ++TKM L I LP YPL +
Sbjct: 1339 LIENELNKVQNAEFG-EVLKVRTVPVTGQIISEYTVEDTKMKLTIELPRDYPLSVPAMNL 1397
Query: 1744 MRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTA 1803
+++ + + +KWL+ + ++ +QNGA+ E I +WKRN DK EG E+C IC +H
Sbjct: 1398 DKAI-VKGDRAKKWLLQLNAYLFHQNGAILEGIEMWKRNVDKGIEGAEDCTICMMTVHQQ 1456
Query: 1804 NHSLPRLACKTCKHKFHSACL------YKWFSTSHKSSCPLCQSPF 1843
+ LP++ CK CK++FHS CL YKWF +S++S+CPLC++ F
Sbjct: 1457 TNQLPKVKCKQCKNRFHSNCLVSSFHTYKWFESSNQSTCPLCRNNF 1502
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
V +CPIC V T +LP C HKF C+ +W TS ++CPLC +
Sbjct: 43 VMDCPICLDVAATEAQTLP------CMHKFCLDCIQRWTLTS--TACPLCNA 86
>sp|Q06834|ASR1_YEAST Alcohol-sensitive RING finger protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ASR1 PE=4 SV=2
Length = 288
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 1790 VEECPICYSVIHTANHSLPRLAC-KTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
+EECPIC + + + C C HKFH C+ +W S CP+C+
Sbjct: 1 MEECPICLA----DDQEGEQFGCLNVCGHKFHLNCIREWHKYSINLKCPICR 48
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1
Length = 257
Score = 42.0 bits (97), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHS--LPRLACKTCKHKFHSACLYKWFSTS 1831
E I I+ + +EEC +C S + LP+ C H FH C+ WF +
Sbjct: 94 EKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPK-----CGHVFHVDCIDTWFRS- 147
Query: 1832 HKSSCPLCQSP 1842
+SSCPLC++P
Sbjct: 148 -RSSCPLCRAP 157
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 1787 FEGVEE-CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
F G +E C +C S N RL K C H FH C+ +W TS ++SCPLC++
Sbjct: 518 FSGTDERCLVCLSNFEL-NDECRRL--KQCNHFFHRECIDQWL-TSSQNSCPLCRT 569
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 1784 DKEFEGVE-ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
D E G E EC IC S S+ L + C+H FH C++KW ST +SSCP C++
Sbjct: 97 DLELAGAEAECAICLSEFEQGE-SIQVL--EKCQHGFHVKCIHKWLST--RSSCPTCRT 150
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 1725 DLIIRLPASYPLRPVDVE-CMRSLGISEVKQRKW--LMSMMLFVRNQNGALAEAIRIWKR 1781
D+I + +Y L V C+ + G+SE +W + SM++F+ + A WK
Sbjct: 449 DVIYYVNGTYRLLEFVVALCVVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKS 508
Query: 1782 --------NFDKEF-----EGVEE----CPICYSVIHTANHSLPRLACKTCKHKFHSACL 1824
N K E +E+ C ICY + +A C H FH+ CL
Sbjct: 509 FLLRRDAVNKIKSLPVATQEQLEKHNDICAICYQDMKSA-------VITPCSHFFHAGCL 561
Query: 1825 YKWFSTSHKSSCPLCQ 1840
KW + +CPLC
Sbjct: 562 KKWLYV--QDTCPLCH 575
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 1725 DLIIRLPASYPLRPVDVE-CMRSLGISEVKQRKW--LMSMMLFVRNQNGALAEAIRIWKR 1781
D+I + +Y L V C+ + G+SE +W + SM++F+ + A WK
Sbjct: 449 DVIYYVNGTYRLLEFLVALCVVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKS 508
Query: 1782 --------NFDKEF-----EGVEE----CPICYSVIHTANHSLPRLACKTCKHKFHSACL 1824
N K E +E+ C ICY + +A C H FH+ CL
Sbjct: 509 FLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKSA-------VITPCSHFFHAGCL 561
Query: 1825 YKWFSTSHKSSCPLCQ 1840
KW + +CPLC
Sbjct: 562 KKWLYV--QETCPLCH 575
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 1725 DLIIRLPASYPLRPVDVE-CMRSLGISEVKQRKW--LMSMMLFVRNQNGALAEAIRIWKR 1781
D+I + +Y L V C+ + G+SE +W + SM++F+ + A WK
Sbjct: 449 DVIYYVNGTYRLLEFLVALCVVAYGVSETVFGEWTVMGSMIIFIHSYYNVWLRAQLGWKS 508
Query: 1782 --------NFDKEF-----EGVEE----CPICYSVIHTANHSLPRLACKTCKHKFHSACL 1824
N K E +E+ C ICY +++A C H FH CL
Sbjct: 509 FLLRRDAVNKIKSLPVATKEQLEQHNDICSICYQDMNSA-------VITPCSHFFHPGCL 561
Query: 1825 YKWFSTSHKSSCPLCQ 1840
KW + +CPLC
Sbjct: 562 KKWLYV--QETCPLCH 575
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 1771 ALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST 1830
AL EA + FD + C ICY +++A C+H FH CL KW
Sbjct: 605 ALPEATPAQLQAFD------DVCAICYQEMYSAK-------ITRCRHFFHGVCLRKWLYV 651
Query: 1831 SHKSSCPLCQ 1840
+ CPLC
Sbjct: 652 QDR--CPLCH 659
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
G C IC+ V + N + + C HK+H C +W +S+CP CQ
Sbjct: 1953 GASSCEICHEVFKSKNVRVLK-----CGHKYHKGCFKQWLKG--QSACPACQG 1998
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1
SV=1
Length = 622
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 37/171 (21%)
Query: 1696 NIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPV-DVECMRSLGISEVKQ 1754
N D N VS +A A + + + +R P++ P PV VE +S
Sbjct: 450 NDTDPNNPTAVSPTA----AVPGEAQNNANAEVRAPSAEPTEPVAPVETDEGSNVSTTAT 505
Query: 1755 RK------------------WLMSMMLFVRNQN------GALAEAI-RIWKRNFDKEFEG 1789
R+ +L F+ N++ G E I + RNF E +
Sbjct: 506 RREGRNSRGAVTFEESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNF-GENDA 564
Query: 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
++ C +C + +T + L +L C H++H C+ +W S S+CP+C+
Sbjct: 565 LKTCSVCITE-YTEGNKLRKLPCS---HEYHIHCIDRWL--SENSTCPICR 609
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=ASR1 PE=3 SV=1
Length = 328
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST-SHKSSCPLCQS 1841
+EC IC+ + + + RL C H++H AC+ KWF S SCP+C++
Sbjct: 16 DECSICWESMPSG---VGRLM--PCGHEYHLACIRKWFHLHSGNRSCPVCRT 62
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 9/52 (17%)
Query: 1792 ECPICYSVIHTANHS--LPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
EC +C S++ +++ LP CKH FH +C+ W +T +S+CP+C++
Sbjct: 99 ECAVCLSLLEEKDNARMLP-----NCKHVFHVSCVDTWLTT--QSTCPVCRT 143
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 28/117 (23%)
Query: 1743 CMRSLGISEVKQRKW--LMSMMLFVRNQNGALAEAIRIWKR--------NFDKEF----- 1787
C+ + G+SE +W + SM++F+ + A WK N K
Sbjct: 468 CVVAYGVSETVFGEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPVSTK 527
Query: 1788 EGVEE----CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
E +E+ C ICY +++A C H FH CL KW + +CPLC
Sbjct: 528 EQLEQHNDICSICYQDMNSA-------VITPCSHFFHPGCLKKWLYV--QETCPLCH 575
>sp|Q8SV35|Y733_ENCCU Uncharacterized RING finger protein ECU07_0330 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_0330 PE=4 SV=1
Length = 314
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
EC IC S RL C H+FH C+ KW H + CP+C++
Sbjct: 268 ECAICMSNFIKNQ----RLRVLPCDHRFHVGCVDKWL-LGHSNKCPVCRT 312
>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1
Length = 165
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 1815 CKHKFHSACLYKWFST-SHKSSCPLCQSPF 1843
C H FH C+Y+W T + K CP+C+ F
Sbjct: 69 CHHNFHDHCIYRWLDTPTSKGLCPMCRQTF 98
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
C IC I A +LP C H F AC+ +W + +CPLC++P
Sbjct: 13 CCICLDAITGAARALP------CLHAFCLACIRRWL--EGRPTCPLCKAPV 55
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
C IC I A +LP C H F AC+ +W + +CPLC++P
Sbjct: 13 CCICLDAITGAARALP------CLHAFCLACIRRWL--EGRPTCPLCKAPV 55
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens GN=SH3RF2
PE=1 SV=3
Length = 729
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842
ECP+C+ + LP C+H F CL + F + CP C++P
Sbjct: 11 ECPVCFEKLDVTAKVLP------CQHTFCKPCLQRVFKAHKELRCPECRTP 55
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1
Length = 758
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 1788 EGVEECPICYSVIHTANHSLPR--------LACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839
E +C IC S + +P C H FH++CL W ++K CP+C
Sbjct: 694 EHTVDCAICMSDVPIYIEEIPETHKVDQHSYMVTPCNHVFHTSCLENWM--NYKLQCPVC 751
Query: 1840 QSP 1842
+SP
Sbjct: 752 RSP 754
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 1715 ATYTKDETKMDLIIRLPASYPLRPVDVECMRSLG----ISEVKQRKWLMSMMLFVRNQN- 1769
A+ +D +M L +R PA RP R LG + E L F+ N+
Sbjct: 523 ASQAQDGAEM-LAVREPAPPQARPSGSRSRRQLGRADSVVEAGTLPILRLAHFFLLNEGD 581
Query: 1770 -----GALAEAI-RIWKRNFDKEFEGVEE-----CPICYSVIHTANHSLPRLACKTCKHK 1818
G E I + R++ E +GV+ C +C S N +L C H+
Sbjct: 582 DDPIRGLTKEQIDNLSTRSY--EQDGVDSELGKVCSVCISDYVAGN----KLRQLPCLHE 635
Query: 1819 FHSACLYKWFSTSHKSSCPLCQSP 1842
FH C+ +W S +CP+C+ P
Sbjct: 636 FHIHCIDRWL--SENCTCPVCRRP 657
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 1785 KEFEGVEECPICYSVIHTANHSLPR--LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842
KE E C +C PR L CKH FH CL KW + CPLC P
Sbjct: 70 KELNLHELCAVCLEDFK------PRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMP 121
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1
SV=3
Length = 612
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 19/91 (20%)
Query: 1761 MMLFVRNQNGALAEAI--RIWKRNFD--------KEFEGVEE-CPICYSVIHTANHSLPR 1809
M L +R A+ +AI R RN + +E + V+ C IC + T LP
Sbjct: 248 MYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLP- 306
Query: 1810 LACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C H FH++CL WF + +CP C+
Sbjct: 307 -----CNHIFHTSCLRSWF--QRQQTCPTCR 330
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1784 DKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841
D + C IC N + R + CKH FH AC+ +W +T + SCPLC++
Sbjct: 757 DASLSSADSCLICLETY--TNGDICR-KLQACKHFFHQACIDQWLTTGNN-SCPLCRA 810
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 1785 KEFEGVEECPICYSVIHTANHSLPR--LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842
KE E C +C PR L CKH FH CL KW + CPLC P
Sbjct: 70 KELNLHELCAVCLEDFK------PRDELGICPCKHAFHRKCLVKWLEV--RKVCPLCNMP 121
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2
SV=1
Length = 639
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 1781 RNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
RNF E + ++ C +C + +T + L +L C H++H C+ +W S S+CP+C+
Sbjct: 574 RNF-GENDALKTCSVCITE-YTEGNKLRKLPCS---HEYHVHCIDRWL--SENSTCPICR 626
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
E P C + + S+ L C+H FH CL KW + SSCP+C+
Sbjct: 204 ELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGN----SSCPVCR 248
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1792 ECPICYSVIHTAN--HSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
+CP C AN + L C H +CL KW S+S+ S C LC + F
Sbjct: 60 DCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C IC + T LP C H FHS+CL WF + +CP C+
Sbjct: 291 CIICREEMVTGAKKLP------CNHIFHSSCLRSWF--QRQQTCPTCR 330
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1
SV=1
Length = 310
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 1778 IWKRNFDKEFEGVEECPICYS--VIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSS 1835
I+ K+F EC IC VI LP CKH FH CL W +S
Sbjct: 215 IFTEELLKKFGAEAECCICKENLVIGDKMQELP------CKHTFHPPCLKPWL--DEHNS 266
Query: 1836 CPLCQ 1840
CP+C+
Sbjct: 267 CPICR 271
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 1780 KRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839
K++ +E + E+C IC S++ + RL C H FH C+ +W + S K CP+C
Sbjct: 281 KKDEGEESDTDEKCTICLSMLEDG-EDVRRLPCM---HLFHQLCVDQWLAMSKK--CPIC 334
Query: 1840 Q 1840
+
Sbjct: 335 R 335
>sp|Q9SZL4|ATL18_ARATH RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2
SV=1
Length = 145
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 1784 DKEFEGVEECPIC---YSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
DKE E CPIC + H LPR C H FH C+ W H +CPLC+
Sbjct: 53 DKEKEEEICCPICLVEFEAEDAVTH-LPR-----CAHLFHINCIEPWLLRGH-LTCPLCR 105
Query: 1841 S 1841
S
Sbjct: 106 S 106
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 1766 RNQNGALAEAIRIWKRNFDKEFEGVE------ECPICYSVIHTANHSLPRLACKTCKHKF 1819
R G AEAI+ + E G+E EC +C + + RL C H F
Sbjct: 52 RPPRGLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLN--EFKDDETLRLV-PPCVHVF 108
Query: 1820 HSACLYKWFSTSHKSSCPLCQS 1841
H+ C+ W SH S+CP+C++
Sbjct: 109 HADCVDIWL--SHSSTCPICRA 128
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 1780 KRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839
K++ +E + E+C IC S++ + RL C H FH C+ +W + S K CP+C
Sbjct: 282 KKDEGEESDTDEKCTICLSMLEDG-EDVRRLPCM---HLFHQLCVDQWLAMSKK--CPIC 335
Query: 1840 Q 1840
+
Sbjct: 336 R 336
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
+ C ICY T+ P C H FH+ CL KW + +CP+C
Sbjct: 545 DVCAICYHEFTTSARITP------CNHYFHALCLRKWLYI--QDTCPMCH 586
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C ICY T+ P C H FH+ CL KW + +CP+C
Sbjct: 547 CAICYHEFTTSARITP------CNHYFHALCLRKWLYI--QDTCPMCH 586
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C IC +HS +A C H FH CL +WF T+ +CP C+
Sbjct: 7 CTICSDFF---DHSRD-VAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
C ICY T+ P C H FH+ CL KW + +CP+C
Sbjct: 547 CAICYHEFTTSARITP------CNHYFHALCLRKWLYI--QDTCPMCH 586
>sp|Q90173|VCG3_NPVBM Zinc finger protein CG30 OS=Bombyx mori nuclear polyhedrosis virus
GN=CG30 PE=4 SV=1
Length = 266
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 1792 ECPICYSVIHTANH---------SLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840
+C IC+SV N+ +P L TCKH+ S C+ K K+ CPLC+
Sbjct: 7 QCNICFSVAEIKNYFMQPIDRLTMIPVLELDTCKHQLCSMCIRK-IRKRKKTPCPLCR 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,441,332
Number of Sequences: 539616
Number of extensions: 26510391
Number of successful extensions: 64478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 64327
Number of HSP's gapped (non-prelim): 271
length of query: 1843
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1711
effective length of database: 120,340,147
effective search space: 205901991517
effective search space used: 205901991517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)