Query 043255
Match_columns 1843
No_of_seqs 346 out of 1340
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5219 Uncharacterized conser 100.0 6.7E-78 1.4E-82 727.3 62.7 282 1540-1843 1235-1522(1525)
2 KOG0803 Predicted E3 ubiquitin 100.0 2.1E-61 4.7E-66 630.7 54.7 1227 2-1456 37-1312(1312)
3 KOG0803 Predicted E3 ubiquitin 99.3 7.6E-12 1.7E-16 167.4 13.1 280 1539-1843 820-1114(1312)
4 PF12861 zf-Apc11: Anaphase-pr 99.0 1.3E-10 2.8E-15 112.3 2.2 63 1777-1843 12-81 (85)
5 PF11793 FANCL_C: FANCL C-term 98.8 1.2E-09 2.7E-14 103.3 -0.1 52 1791-1843 3-65 (70)
6 PF13639 zf-RING_2: Ring finge 98.7 3.5E-09 7.6E-14 91.1 1.2 44 1791-1840 1-44 (44)
7 PF12678 zf-rbx1: RING-H2 zinc 98.7 8.7E-09 1.9E-13 98.3 2.5 49 1790-1840 19-73 (73)
8 COG5194 APC11 Component of SCF 98.6 1.6E-08 3.5E-13 95.3 2.5 52 1790-1843 20-80 (88)
9 KOG1493 Anaphase-promoting com 98.5 2.4E-08 5.2E-13 93.4 1.5 55 1789-1843 19-80 (84)
10 COG5243 HRD1 HRD ubiquitin lig 98.5 5.6E-08 1.2E-12 113.4 3.4 52 1789-1842 286-343 (491)
11 COG5540 RING-finger-containing 98.5 6.4E-08 1.4E-12 110.8 2.4 48 1791-1843 324-371 (374)
12 KOG4445 Uncharacterized conser 98.5 2E-07 4.4E-12 106.6 6.3 116 1724-1843 47-185 (368)
13 PHA02929 N1R/p28-like protein; 98.4 1.4E-07 3E-12 108.4 3.8 53 1789-1843 173-226 (238)
14 KOG4628 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 113.6 2.5 47 1791-1842 230-276 (348)
15 KOG3268 Predicted E3 ubiquitin 98.3 2.8E-07 6E-12 98.5 2.3 119 1708-1843 90-227 (234)
16 PHA02926 zinc finger-like prot 98.1 2.1E-06 4.7E-11 95.8 4.0 54 1788-1843 168-229 (242)
17 cd00162 RING RING-finger (Real 98.1 2.6E-06 5.6E-11 71.8 3.4 45 1792-1843 1-45 (45)
18 KOG2930 SCF ubiquitin ligase, 98.1 1.4E-06 3E-11 86.2 1.5 62 1775-1843 36-107 (114)
19 KOG0802 E3 ubiquitin ligase [P 97.9 3E-06 6.6E-11 108.9 2.0 49 1789-1841 290-338 (543)
20 PLN03208 E3 ubiquitin-protein 97.9 8.7E-06 1.9E-10 90.5 3.9 49 1788-1843 16-78 (193)
21 KOG0317 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 92.5 2.8 49 1786-1843 235-283 (293)
22 KOG0828 Predicted E3 ubiquitin 97.7 1.4E-05 3.1E-10 96.6 1.8 55 1788-1843 569-633 (636)
23 PF00097 zf-C3HC4: Zinc finger 97.6 2.8E-05 6.2E-10 65.8 1.8 41 1793-1839 1-41 (41)
24 KOG0915 Uncharacterized conser 97.6 0.0063 1.4E-07 82.8 23.9 312 47-409 955-1325(1702)
25 PF13923 zf-C3HC4_2: Zinc fing 97.5 4.7E-05 1E-09 64.2 2.0 39 1793-1839 1-39 (39)
26 PF13920 zf-C3HC4_3: Zinc fing 97.4 6.6E-05 1.4E-09 66.6 2.0 45 1790-1843 2-47 (50)
27 smart00744 RINGv The RING-vari 97.4 9E-05 2E-09 65.8 2.5 46 1792-1840 1-49 (49)
28 smart00184 RING Ring finger. E 97.4 0.00011 2.4E-09 59.8 2.5 39 1793-1839 1-39 (39)
29 KOG0823 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 82.9 2.4 47 1789-1842 46-93 (230)
30 smart00504 Ubox Modified RING 97.2 0.00023 4.9E-09 65.5 3.4 43 1792-1843 3-45 (63)
31 PF15227 zf-C3HC4_4: zinc fing 97.1 0.00027 6E-09 60.8 2.2 40 1793-1839 1-42 (42)
32 TIGR00599 rad18 DNA repair pro 97.0 0.00044 9.6E-09 85.2 3.9 49 1786-1843 22-70 (397)
33 KOG0320 Predicted E3 ubiquitin 97.0 0.00037 8E-09 76.1 2.7 48 1788-1842 129-176 (187)
34 PF14634 zf-RING_5: zinc-RING 96.9 0.00075 1.6E-08 58.5 2.8 44 1792-1841 1-44 (44)
35 KOG0804 Cytoplasmic Zn-finger 96.8 0.00043 9.3E-09 84.1 1.5 46 1789-1841 174-219 (493)
36 PF12348 CLASP_N: CLASP N term 96.5 0.03 6.4E-07 64.2 13.2 186 16-292 17-210 (228)
37 KOG1734 Predicted RING-contain 96.3 0.0009 2E-08 76.7 -0.1 52 1790-1841 224-278 (328)
38 KOG0311 Predicted E3 ubiquitin 96.2 0.00076 1.6E-08 80.1 -1.4 49 1787-1842 40-88 (381)
39 COG5432 RAD18 RING-finger-cont 96.2 0.0018 3.9E-08 74.7 1.4 46 1788-1843 23-69 (391)
40 KOG0287 Postreplication repair 96.2 0.0018 4E-08 76.1 1.4 44 1791-1843 24-67 (442)
41 COG5574 PEX10 RING-finger-cont 96.1 0.0025 5.4E-08 73.6 2.1 45 1789-1842 214-260 (271)
42 KOG2164 Predicted E3 ubiquitin 96.1 0.0028 6.2E-08 78.7 2.4 47 1790-1843 186-235 (513)
43 KOG0825 PHD Zn-finger protein 96.0 0.0019 4E-08 82.2 0.1 48 1790-1843 123-170 (1134)
44 PHA02825 LAP/PHD finger-like p 95.9 0.0059 1.3E-07 66.1 3.3 52 1786-1843 4-58 (162)
45 KOG1952 Transcription factor N 95.8 0.0036 7.9E-08 81.0 1.5 50 1789-1841 190-244 (950)
46 PHA02862 5L protein; Provision 95.7 0.006 1.3E-07 64.8 2.5 50 1791-1843 3-52 (156)
47 PF13445 zf-RING_UBOX: RING-ty 95.4 0.0074 1.6E-07 52.5 1.7 41 1793-1837 1-43 (43)
48 PF04564 U-box: U-box domain; 95.4 0.0082 1.8E-07 57.7 2.1 44 1792-1843 6-49 (73)
49 PF10508 Proteasom_PSMB: Prote 94.9 1.9 4.1E-05 56.0 21.7 266 5-333 2-276 (503)
50 KOG1941 Acetylcholine receptor 93.9 0.021 4.5E-07 68.6 0.9 47 1792-1841 367-413 (518)
51 PF12906 RINGv: RING-variant d 93.8 0.027 5.9E-07 49.9 1.3 44 1793-1839 1-47 (47)
52 PF08746 zf-RING-like: RING-li 93.6 0.044 9.6E-07 47.7 2.1 41 1793-1839 1-43 (43)
53 KOG4172 Predicted E3 ubiquitin 93.4 0.024 5.3E-07 51.0 0.2 45 1791-1843 8-53 (62)
54 KOG1039 Predicted E3 ubiquitin 93.4 0.051 1.1E-06 66.4 2.9 55 1788-1842 159-219 (344)
55 KOG2171 Karyopherin (importin) 92.5 4.6 9.9E-05 55.6 19.1 294 10-340 122-470 (1075)
56 PF12755 Vac14_Fab1_bd: Vacuol 92.5 0.62 1.3E-05 47.5 8.7 85 25-110 5-89 (97)
57 KOG1824 TATA-binding protein-i 92.3 3.9 8.3E-05 55.1 17.4 211 21-292 189-406 (1233)
58 KOG0978 E3 ubiquitin ligase in 92.0 0.05 1.1E-06 71.1 0.4 49 1787-1843 640-688 (698)
59 PF01602 Adaptin_N: Adaptin N 91.9 12 0.00026 48.3 21.7 99 225-336 311-411 (526)
60 PF14570 zf-RING_4: RING/Ubox 91.6 0.14 3.1E-06 45.6 2.7 47 1793-1843 1-47 (48)
61 PF14835 zf-RING_6: zf-RING of 91.5 0.055 1.2E-06 50.7 0.0 41 1791-1842 8-49 (65)
62 PF11789 zf-Nse: Zinc-finger o 91.3 0.08 1.7E-06 48.9 0.9 42 1791-1838 12-53 (57)
63 KOG1824 TATA-binding protein-i 91.0 35 0.00076 46.7 23.9 304 8-352 214-542 (1233)
64 KOG4265 Predicted E3 ubiquitin 90.6 0.13 2.9E-06 62.2 2.0 47 1788-1843 288-335 (349)
65 KOG1002 Nucleotide excision re 90.3 0.13 2.8E-06 63.9 1.7 55 1781-1842 527-584 (791)
66 KOG1062 Vesicle coat complex A 89.9 33 0.00071 46.3 22.2 116 221-353 354-471 (866)
67 KOG1814 Predicted E3 ubiquitin 89.7 0.8 1.7E-05 56.4 7.5 46 1791-1840 185-236 (445)
68 KOG1785 Tyrosine kinase negati 89.6 0.13 2.8E-06 62.2 0.8 155 1643-1843 233-415 (563)
69 KOG2171 Karyopherin (importin) 89.4 10 0.00023 52.4 18.0 164 43-248 343-506 (1075)
70 KOG4718 Non-SMC (structural ma 88.8 0.13 2.8E-06 58.1 0.1 45 1790-1842 181-225 (235)
71 KOG4159 Predicted E3 ubiquitin 88.8 0.24 5.1E-06 61.9 2.3 45 1790-1843 84-128 (398)
72 PF13513 HEAT_EZ: HEAT-like re 88.7 0.53 1.1E-05 42.2 3.9 54 62-115 1-54 (55)
73 smart00591 RWD domain in RING 88.1 3.8 8.3E-05 41.3 10.2 45 1723-1767 42-86 (107)
74 PF12717 Cnd1: non-SMC mitotic 88.1 7.3 0.00016 43.7 13.3 110 19-138 1-110 (178)
75 KOG1242 Protein containing ada 87.6 17 0.00037 47.6 17.5 205 10-272 138-346 (569)
76 KOG2023 Nuclear transport rece 87.5 13 0.00028 48.8 16.1 261 55-376 400-671 (885)
77 KOG1829 Uncharacterized conser 87.2 0.37 8E-06 62.4 2.7 68 1764-1840 478-557 (580)
78 PTZ00429 beta-adaptin; Provisi 87.0 73 0.0016 43.7 23.7 121 222-355 145-265 (746)
79 COG5183 SSM4 Protein involved 86.9 0.34 7.5E-06 62.9 2.1 51 1788-1843 10-65 (1175)
80 KOG2879 Predicted E3 ubiquitin 86.5 1.1 2.4E-05 52.8 5.7 61 1776-1842 218-285 (298)
81 PF12755 Vac14_Fab1_bd: Vacuol 86.5 3.5 7.6E-05 42.2 8.7 73 65-140 3-75 (97)
82 KOG0297 TNF receptor-associate 86.2 0.41 8.8E-06 60.1 2.3 47 1788-1842 19-65 (391)
83 PF05883 Baculo_RING: Baculovi 85.8 0.22 4.9E-06 53.1 -0.2 35 1790-1828 26-66 (134)
84 KOG1240 Protein kinase contain 85.6 8.7 0.00019 53.2 13.8 224 18-289 435-686 (1431)
85 KOG1241 Karyopherin (importin) 85.0 9.2 0.0002 50.8 13.2 182 43-247 595-787 (859)
86 KOG0309 Conserved WD40 repeat- 84.8 0.51 1.1E-05 61.1 2.2 40 1792-1838 1030-1069(1081)
87 KOG1820 Microtubule-associated 84.8 21 0.00045 49.0 17.0 182 13-291 260-446 (815)
88 PF10272 Tmpp129: Putative tra 84.5 0.72 1.6E-05 56.9 3.2 66 1775-1843 248-350 (358)
89 KOG2034 Vacuolar sorting prote 84.0 0.49 1.1E-05 62.9 1.6 43 1782-1829 809-851 (911)
90 KOG1428 Inhibitor of type V ad 83.5 0.69 1.5E-05 62.8 2.6 52 1788-1843 3484-3543(3738)
91 PF13901 DUF4206: Domain of un 83.5 1 2.2E-05 51.8 3.7 71 1762-1840 117-196 (202)
92 PF10367 Vps39_2: Vacuolar sor 82.9 0.45 9.7E-06 48.3 0.5 34 1787-1825 75-108 (109)
93 KOG0269 WD40 repeat-containing 82.6 0.81 1.7E-05 59.9 2.7 44 1791-1841 780-825 (839)
94 PF12348 CLASP_N: CLASP N term 80.7 9.8 0.00021 43.7 10.4 101 10-116 98-204 (228)
95 PF00179 UQ_con: Ubiquitin-con 79.9 6.5 0.00014 42.2 8.1 59 1685-1745 2-68 (140)
96 PTZ00429 beta-adaptin; Provisi 79.8 91 0.002 42.9 20.2 92 12-117 111-207 (746)
97 PHA03096 p28-like protein; Pro 78.9 1.1 2.3E-05 54.0 1.9 49 1791-1841 179-231 (284)
98 PF05773 RWD: RWD domain; Int 78.8 5.8 0.00012 40.3 6.9 48 1722-1769 49-96 (113)
99 PF13001 Ecm29: Proteasome sta 77.5 3.2 7E-05 53.9 5.8 188 78-295 219-450 (501)
100 COG5078 Ubiquitin-protein liga 76.8 22 0.00047 39.6 10.9 100 1683-1784 8-137 (153)
101 PF12460 MMS19_C: RNAPII trans 76.4 88 0.0019 39.9 17.9 204 19-266 203-413 (415)
102 KOG2023 Nuclear transport rece 76.3 70 0.0015 42.6 16.4 97 19-116 187-283 (885)
103 KOG2660 Locus-specific chromos 75.9 1 2.2E-05 54.3 0.6 47 1787-1841 12-58 (331)
104 KOG2114 Vacuolar assembly/sort 75.8 2 4.2E-05 57.2 3.1 76 1751-1841 793-880 (933)
105 PF04641 Rtf2: Rtf2 RING-finge 75.4 2 4.4E-05 51.2 2.9 104 1732-1843 40-160 (260)
106 COG5175 MOT2 Transcriptional r 74.9 1.7 3.7E-05 52.1 2.0 49 1790-1842 14-62 (480)
107 PF10508 Proteasom_PSMB: Prote 74.0 2.8E+02 0.0061 36.5 21.9 271 10-318 206-491 (503)
108 PF05004 IFRD: Interferon-rela 73.9 99 0.0021 38.1 16.8 203 7-249 44-260 (309)
109 PF13717 zinc_ribbon_4: zinc-r 73.8 1.3 2.8E-05 37.3 0.5 29 1792-1820 4-36 (36)
110 KOG1609 Protein involved in mR 72.4 1.6 3.5E-05 52.6 1.1 52 1790-1842 78-132 (323)
111 KOG3002 Zn finger protein [Gen 71.9 2.2 4.9E-05 51.7 2.1 44 1789-1843 47-90 (299)
112 KOG0827 Predicted E3 ubiquitin 71.4 0.45 9.7E-06 57.9 -3.8 46 1790-1842 196-243 (465)
113 PF01602 Adaptin_N: Adaptin N 71.3 1.3E+02 0.0029 38.8 18.1 248 11-313 84-350 (526)
114 KOG0418 Ubiquitin-protein liga 68.5 8.3 0.00018 43.5 5.3 61 1684-1744 7-75 (200)
115 cd00195 UBCc Ubiquitin-conjuga 67.2 21 0.00046 38.5 8.1 59 1684-1744 3-68 (141)
116 PF13719 zinc_ribbon_5: zinc-r 67.0 2 4.3E-05 36.4 0.2 29 1792-1820 4-36 (37)
117 PF13251 DUF4042: Domain of un 66.7 65 0.0014 36.8 12.1 160 23-249 3-177 (182)
118 PF07800 DUF1644: Protein of u 66.0 6.1 0.00013 43.6 3.6 40 1791-1830 3-48 (162)
119 KOG1940 Zn-finger protein [Gen 64.5 4.4 9.5E-05 48.6 2.5 45 1792-1841 160-204 (276)
120 KOG3053 Uncharacterized conser 63.8 3 6.6E-05 48.8 1.0 52 1789-1842 19-80 (293)
121 cd00020 ARM Armadillo/beta-cat 62.8 39 0.00084 33.9 8.7 102 11-116 12-118 (120)
122 PLN02189 cellulose synthase 62.6 5.2 0.00011 55.1 2.9 52 1791-1843 35-86 (1040)
123 PF10571 UPF0547: Uncharacteri 61.4 4.4 9.5E-05 32.0 1.2 24 1792-1820 2-25 (26)
124 PF14446 Prok-RING_1: Prokaryo 60.8 6.6 0.00014 36.2 2.3 33 1791-1826 6-38 (54)
125 KOG3899 Uncharacterized conser 60.4 4.2 9E-05 48.2 1.3 29 1815-1843 325-364 (381)
126 PF10274 ParcG: Parkin co-regu 59.3 38 0.00082 38.8 8.4 89 6-94 38-129 (183)
127 PRK09687 putative lyase; Provi 59.1 1.9E+02 0.0041 35.2 15.0 91 10-117 27-119 (280)
128 PLN02436 cellulose synthase A 56.8 6.9 0.00015 54.1 2.6 50 1792-1842 38-87 (1094)
129 KOG0213 Splicing factor 3b, su 55.9 1E+02 0.0022 41.5 12.3 148 70-262 780-928 (1172)
130 KOG1001 Helicase-like transcri 53.9 4.5 9.8E-05 54.2 0.2 44 1791-1842 455-498 (674)
131 PTZ00390 ubiquitin-conjugating 53.7 45 0.00097 36.9 7.8 61 1684-1746 6-73 (152)
132 COG5236 Uncharacterized conser 53.6 8.1 0.00018 46.8 2.2 48 1788-1843 59-107 (493)
133 PF00628 PHD: PHD-finger; Int 53.3 5.1 0.00011 35.6 0.4 44 1793-1840 2-49 (51)
134 KOG0421 Ubiquitin-protein liga 53.3 24 0.00053 38.2 5.3 61 1720-1780 74-156 (175)
135 COG5240 SEC21 Vesicle coat com 52.3 51 0.0011 43.0 8.7 102 9-114 434-551 (898)
136 cd03572 ENTH_epsin_related ENT 52.1 11 0.00024 40.3 2.7 67 10-76 42-118 (122)
137 PLN00172 ubiquitin conjugating 50.9 59 0.0013 35.8 8.1 62 1683-1746 4-72 (147)
138 COG5152 Uncharacterized conser 50.9 7 0.00015 44.2 1.0 41 1792-1841 198-238 (259)
139 PF12717 Cnd1: non-SMC mitotic 50.9 52 0.0011 37.0 7.9 86 4-93 23-109 (178)
140 KOG1242 Protein containing ada 50.0 82 0.0018 41.6 10.3 106 7-116 217-322 (569)
141 KOG1243 Protein kinase [Genera 49.9 41 0.00089 44.9 7.7 118 10-132 334-474 (690)
142 smart00212 UBCc Ubiquitin-conj 49.7 61 0.0013 35.1 8.0 59 1685-1745 3-69 (145)
143 KOG4323 Polycomb-like PHD Zn-f 49.4 7.3 0.00016 49.6 1.0 34 1790-1825 168-201 (464)
144 COG5242 TFB4 RNA polymerase II 48.8 7.2 0.00016 44.9 0.7 24 1792-1820 262-285 (296)
145 PF11864 DUF3384: Domain of un 48.6 7.4E+02 0.016 32.3 18.8 54 21-77 5-58 (464)
146 KOG0802 E3 ubiquitin ligase [P 48.5 8.7 0.00019 50.5 1.6 41 1788-1841 477-517 (543)
147 PLN02638 cellulose synthase A 48.4 11 0.00024 52.2 2.6 50 1792-1842 19-68 (1079)
148 PF10274 ParcG: Parkin co-regu 48.1 1.3E+02 0.0028 34.6 10.4 114 59-175 49-163 (183)
149 smart00249 PHD PHD zinc finger 46.5 7 0.00015 33.1 0.2 31 1792-1826 1-31 (47)
150 KOG3970 Predicted E3 ubiquitin 46.4 25 0.00055 40.6 4.5 63 1772-1843 36-104 (299)
151 KOG0298 DEAD box-containing he 45.9 11 0.00024 52.7 1.9 62 1772-1841 1122-1196(1394)
152 PF12726 SEN1_N: SEN1 N termin 45.9 1E+03 0.022 33.0 23.4 113 4-119 35-150 (727)
153 KOG3005 GIY-YIG type nuclease 45.7 11 0.00024 44.8 1.6 49 1791-1841 183-240 (276)
154 COG5220 TFB3 Cdk activating ki 45.5 8.6 0.00019 44.6 0.7 48 1791-1840 11-60 (314)
155 KOG1813 Predicted E3 ubiquitin 45.0 8.8 0.00019 46.1 0.7 42 1792-1842 243-284 (313)
156 KOG3039 Uncharacterized conser 44.9 16 0.00034 42.8 2.7 47 1792-1843 223-269 (303)
157 PLN02915 cellulose synthase A 44.9 15 0.00032 51.1 2.8 52 1790-1842 15-66 (1044)
158 KOG4275 Predicted E3 ubiquitin 44.7 5.5 0.00012 47.4 -1.0 11 1790-1800 300-310 (350)
159 PF12231 Rif1_N: Rap1-interact 44.2 7.7E+02 0.017 31.2 20.6 105 266-380 239-355 (372)
160 PLN03200 cellulose synthase-in 43.5 6.2E+02 0.013 39.0 18.3 234 55-336 616-861 (2102)
161 PF08064 UME: UME (NUC010) dom 43.3 70 0.0015 33.3 6.9 74 16-92 25-99 (107)
162 COG5222 Uncharacterized conser 43.2 14 0.0003 44.1 1.9 44 1791-1841 275-318 (427)
163 PF14569 zf-UDP: Zinc-binding 42.3 24 0.00052 34.9 3.0 52 1791-1843 10-61 (80)
164 KOG0425 Ubiquitin-protein liga 41.9 22 0.00048 39.2 3.1 101 1681-1783 6-149 (171)
165 KOG4692 Predicted E3 ubiquitin 41.5 18 0.00038 44.2 2.4 45 1789-1842 421-465 (489)
166 PF02985 HEAT: HEAT repeat; I 41.1 36 0.00078 27.4 3.5 26 53-78 5-30 (31)
167 KOG2041 WD40 repeat protein [G 41.0 19 0.00042 47.3 2.9 27 1810-1842 1157-1183(1189)
168 KOG4443 Putative transcription 38.9 17 0.00037 47.8 1.9 48 1792-1841 20-70 (694)
169 PF13251 DUF4042: Domain of un 38.6 6.6E+02 0.014 29.0 14.2 62 228-289 113-175 (182)
170 PLN02400 cellulose synthase 38.0 17 0.00037 50.7 1.8 50 1792-1842 38-87 (1085)
171 PF12460 MMS19_C: RNAPII trans 37.4 5.5E+02 0.012 32.9 14.9 80 227-309 333-413 (415)
172 KOG0211 Protein phosphatase 2A 37.4 7.2E+02 0.016 34.6 16.5 267 50-355 239-526 (759)
173 KOG1248 Uncharacterized conser 36.9 9.1E+02 0.02 35.0 17.2 215 20-264 627-874 (1176)
174 KOG1062 Vesicle coat complex A 36.0 55 0.0012 44.3 5.8 147 224-381 149-303 (866)
175 KOG2956 CLIP-associating prote 35.9 82 0.0018 40.5 7.0 72 18-93 418-494 (516)
176 KOG1812 Predicted E3 ubiquitin 35.7 17 0.00036 46.0 1.2 45 1790-1838 306-350 (384)
177 KOG1059 Vesicle coat complex A 35.5 76 0.0016 42.6 6.8 82 222-314 149-230 (877)
178 KOG0826 Predicted E3 ubiquitin 33.8 24 0.00053 43.0 2.0 44 1790-1841 300-343 (357)
179 TIGR02098 MJ0042_CXXC MJ0042 f 33.0 15 0.00032 31.0 0.1 29 1792-1820 4-36 (38)
180 PF05290 Baculo_IE-1: Baculovi 32.9 33 0.00071 37.1 2.6 51 1789-1843 79-131 (140)
181 KOG0825 PHD Zn-finger protein 32.7 27 0.00058 46.6 2.2 53 1789-1841 95-151 (1134)
182 PF09324 DUF1981: Domain of un 32.5 1.2E+02 0.0026 30.5 6.4 69 43-114 16-84 (86)
183 KOG0915 Uncharacterized conser 32.5 2.6E+02 0.0055 41.0 11.2 111 5-119 954-1069(1702)
184 smart00647 IBR In Between Ring 31.9 25 0.00055 32.2 1.4 38 1790-1827 18-58 (64)
185 PRK13800 putative oxidoreducta 31.1 3.9E+02 0.0085 37.8 13.2 182 5-283 713-894 (897)
186 PF14311 DUF4379: Domain of un 31.1 27 0.00059 31.9 1.5 28 1809-1839 28-55 (55)
187 KOG4362 Transcriptional regula 31.0 12 0.00027 49.7 -1.1 47 1789-1842 20-67 (684)
188 KOG2487 RNA polymerase II tran 30.5 16 0.00034 43.5 -0.2 24 1792-1820 275-298 (314)
189 KOG0212 Uncharacterized conser 30.3 5.5E+02 0.012 34.3 12.8 101 13-116 7-111 (675)
190 PF10363 DUF2435: Protein of u 30.2 1.5E+02 0.0032 30.4 6.6 82 222-314 8-89 (92)
191 KOG0420 Ubiquitin-protein liga 29.9 1E+02 0.0023 34.7 5.8 73 1675-1747 21-101 (184)
192 KOG1949 Uncharacterized conser 29.5 5.9E+02 0.013 34.8 13.0 208 47-298 128-342 (1005)
193 cd00350 rubredoxin_like Rubred 29.5 29 0.00064 28.7 1.2 10 1792-1801 3-12 (33)
194 PF05997 Nop52: Nucleolar prot 29.4 1.7E+02 0.0038 34.3 8.0 70 11-80 5-75 (217)
195 KOG1812 Predicted E3 ubiquitin 29.1 26 0.00057 44.3 1.4 39 1789-1831 145-184 (384)
196 KOG1815 Predicted E3 ubiquitin 28.9 46 0.001 42.9 3.5 38 1792-1830 228-267 (444)
197 KOG0212 Uncharacterized conser 28.6 1.5E+03 0.033 30.4 16.2 182 57-282 217-400 (675)
198 COG1545 Predicted nucleic-acid 28.2 25 0.00055 38.4 0.9 28 1805-1842 25-52 (140)
199 KOG0426 Ubiquitin-protein liga 28.0 1.1E+02 0.0025 32.8 5.4 61 1723-1783 53-148 (165)
200 KOG4218 Nuclear hormone recept 27.9 21 0.00046 43.4 0.3 50 1790-1841 15-75 (475)
201 PF09538 FYDLN_acid: Protein o 27.7 32 0.00069 36.2 1.5 10 1811-1820 11-20 (108)
202 KOG2068 MOT2 transcription fac 26.6 45 0.00097 41.1 2.6 49 1789-1842 248-296 (327)
203 KOG0427 Ubiquitin conjugating 26.6 2.1E+02 0.0046 30.9 7.0 61 1685-1747 20-86 (161)
204 smart00132 LIM Zinc-binding do 26.3 32 0.00069 28.1 1.0 36 1793-1843 2-37 (39)
205 KOG2956 CLIP-associating prote 25.9 8E+02 0.017 32.2 13.0 101 7-114 287-396 (516)
206 PF09765 WD-3: WD-repeat regio 25.8 3E+02 0.0064 33.9 9.3 68 1677-1750 98-165 (291)
207 COG3357 Predicted transcriptio 25.5 22 0.00048 36.0 -0.1 27 1811-1843 60-86 (97)
208 KOG3911 Nucleolar protein NOP5 24.9 2.3E+02 0.005 35.2 7.9 73 7-79 8-83 (378)
209 PF08167 RIX1: rRNA processing 24.4 5.7E+02 0.012 28.6 10.6 109 9-119 28-147 (165)
210 KOG1241 Karyopherin (importin) 24.3 2.1E+03 0.046 30.2 28.6 216 58-313 374-607 (859)
211 PF13646 HEAT_2: HEAT repeats; 24.1 2.7E+02 0.0058 26.7 7.1 83 11-113 4-87 (88)
212 KOG2789 Putative Zn-finger pro 23.0 39 0.00084 42.2 1.2 33 1790-1827 74-106 (482)
213 PLN03200 cellulose synthase-in 22.0 1.1E+03 0.023 36.7 14.9 246 15-317 455-709 (2102)
214 PF02985 HEAT: HEAT repeat; I 21.9 1.2E+02 0.0027 24.3 3.5 26 222-247 5-30 (31)
215 PF10363 DUF2435: Protein of u 21.7 4.6E+02 0.01 26.8 8.3 79 7-87 4-82 (92)
216 smart00531 TFIIE Transcription 21.5 45 0.00097 36.6 1.2 9 1834-1842 124-132 (147)
217 KOG1991 Nuclear transport rece 21.1 7.1E+02 0.015 35.3 12.0 148 23-181 479-629 (1010)
218 KOG1571 Predicted E3 ubiquitin 21.0 39 0.00084 41.9 0.7 41 1790-1842 305-345 (355)
219 PF14500 MMS19_N: Dos2-interac 20.7 1.8E+02 0.0039 35.1 6.1 64 223-288 5-69 (262)
220 cd00020 ARM Armadillo/beta-cat 20.4 4E+02 0.0088 26.5 7.8 84 57-142 16-100 (120)
221 KOG4274 Positive cofactor 2 (P 20.1 2.7E+02 0.0058 36.8 7.4 105 1673-1786 613-723 (742)
No 1
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=100.00 E-value=6.7e-78 Score=727.33 Aligned_cols=282 Identities=29% Similarity=0.536 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-chhHHHHhhcCCCchhhhhhccccCCCCchhhhHHhhhhccccc
Q 043255 1540 NVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSAN-TVILDCIFQHIPLELCEMQDLKKKDGDLPAEVSAAATAAKHAIT 1618 (1843)
Q Consensus 1540 ~yLl~W~Lvl~~~~~~~~s~~~R~~y~~~lk~~~~-~~lL~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1618 (1843)
.|||.|+||+-||++. +|++|..++++|+.++. +++++++-+.+.+...- .|+.. .++.+.
T Consensus 1235 vYL~~w~lI~~hf~dT--~yNm~~siI~qL~~~~l~~~~~~~l~~~~~ls~~~----fw~~v------------d~~~~i 1296 (1525)
T COG5219 1235 VYLPLWRLIYGHFADT--VYNMYSSIISQLDMNSLDSEVYVLLRGCFLLSTVL----FWDLV------------DNSLLI 1296 (1525)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhhhhhHHHHHHHHHHhcchhhH----HHHHh------------ccccee
Confidence 8999999999999964 99999999999999999 99999999988877411 11111 111222
Q ss_pred cCCccccccCCCCCChhhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhHHHHHHHhHHhcCHHHHHHHHHHHHh----
Q 043255 1619 TGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKK---- 1694 (1843)
Q Consensus 1619 ~~~~~~~~e~~~~~~~~~~~~l~~~ly~~~l~~lP~~vr~W~~~~~~r~~~~~ve~~t~~~~Sp~li~~el~~v~~---- 1694 (1843)
.|.+.....+ ....+..||+|+||.+++++.+.++.||..+++|.+++.||+||.-+|||+||+.|++.|..
T Consensus 1297 ~yNi~~nySs----~tdrI~CLa~HiyYq~f~~~~~~~~~ww~~iKdr~lq~~ie~Fv~~nIsp~Lik~e~dDi~s~i~~ 1372 (1525)
T COG5219 1297 VYNISINYSS----ATDRIRCLAIHIYYQFFEKMVGEKEEWWVFLKDRGLQRSLEAFVFPNISPSLIKMEVDDLDSFILK 1372 (1525)
T ss_pred eeeeeccccc----cchhhHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHhccccchhhhhhhhhHHHHHHHH
Confidence 2332210011 33456689999999999999999999999999999999999999999999999999999853
Q ss_pred -ccCCCCceEEEEeccccEEEEEEEecCCceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhccccHH
Q 043255 1695 -ANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALA 1773 (1843)
Q Consensus 1695 -~~~~~~~~~Vkv~~~~~EV~a~Y~ide~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGsi~ 1773 (1843)
...++..++||+|+.||||.++|.+|++++|+.|+||++|||.+|+|+|.+|||++|++||+|++..|.+++.+||+++
T Consensus 1373 e~s~~~~dvtvK~n~~TnEi~~~Y~~d~~kle~~ikiPs~YPl~NvQVeGi~rVg~sE~~wkswI~~~q~~~~~~ngs~~ 1452 (1525)
T COG5219 1373 EASRTIADVTVKANKLTNEIGITYTADGTKLEALIKIPSGYPLKNVQVEGIKRVGTSEIGWKSWINLRQNEMIKKNGSFM 1452 (1525)
T ss_pred hhhcchhhheeehhhccchheeEEecCCcEEEEEEecCCCCCcccceeccceeccccHHHHHHHHHHHHHHHHhccchHH
Confidence 1123448999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1774 d~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|++.+||+|++.+|+|++||||||++++..|+++|.++|+||+|+||..||||||++|++++||+||..|
T Consensus 1453 D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1453 DLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred HHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865
No 2
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-61 Score=630.73 Aligned_cols=1227 Identities=23% Similarity=0.252 Sum_probs=696.8
Q ss_pred CCCCHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhch
Q 043255 2 QDIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGR 81 (1843)
Q Consensus 2 ~~lD~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK 81 (1843)
.++|+|+++++|||+|||+|||+||||||.+++.+.+.+.+.+|||+|+++|+++++|++|+||+++|+++..++++++|
T Consensus 37 ~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 37 LELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred hccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHh-ccCccccCC-CCCChhhH
Q 043255 82 DLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENL-KLTPQNLSD-KAIALDEL 159 (1843)
Q Consensus 82 ~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~L-k~Tp~TLSD-ks~~~EE~ 159 (1843)
++|||||.+||+|++|+||+|.+||++|+++|+.+|+ ++|+..+|.+|+.+|+.|+.+++ ++||+|||| ++.++||+
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 9999999999999999999999999999999999999 57999999999999999999996 999999999 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHH
Q 043255 160 EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYS 239 (1843)
Q Consensus 160 EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~ 239 (1843)
|.||+||+++||.++.+++..+.. .++... ++...+.|.++..||++++|+.|+||.++|+
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~-------~~el~~------------~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~e 256 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGD-------EEELHS------------LSEKEKTFLSSEKFWKLLKSKSPSIKVALLE 256 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCc-------hHhhhh------------hhhhhhhhhhHHHHHHHhcCCCcchhHHHHH
Confidence 999999999999999999976521 111110 0111233444778999999999999999999
Q ss_pred HHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecC--cchhhhHHHHHHHH-ccCC
Q 043255 240 VLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLN--AQKTILNRFWHFLK-NGCF 316 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n--~kK~~lprL~~~Lr-~G~~ 316 (1843)
++..++++.|..+.+.+...+.+++++.+++++ .++++||++++.+.+++||+|-|.| .+|.++|+|++++| +|++
T Consensus 257 ll~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~irkn~~~ 335 (1312)
T KOG0803|consen 257 LLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIRKNGFF 335 (1312)
T ss_pred HHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHhhcccc
Confidence 999999999887666677888888889999999 9999999999999999999999999 99999999999999 9999
Q ss_pred CCCccchhhHHHHhhhCCcCcCC---ChHHHHHHHHHHHhhhcCCC---CCcchHHHHHHHHHHHHHHHHhhccccCCCC
Q 043255 317 GSQQVSYPALVLFLDVVPPKAVA---ADKFFQDFFNSLWAGRNEPH---SSNSDHKAFFRAFKECFLWGLLNASRYFDGV 390 (1843)
Q Consensus 317 Gsa~~~yp~LlplLs~iP~~vl~---~~~f~~~ff~al~~Gl~~r~---~s~s~~~a~~say~Ec~~~~l~~~~~~~~~~ 390 (1843)
|.+++.||+++||++++|...+. ...|+..|+..+..|..... .+..++..+..+|.||+++++++..++....
T Consensus 336 ~~~~~~~P~~l~fl~~l~~~~~i~~~~~~F~dn~~~~~~~~~~~~~~~~~s~~d~~~i~~~~~e~ll~~m~~s~~~~~~~ 415 (1312)
T KOG0803|consen 336 GSDQVTLPSLLVFLAKLPKMSLIDLRKDAFLDNFLLELIAGELLVSDQWCSFLDFVSIFLAGFECLLKLLRQSLDNVEVL 415 (1312)
T ss_pred ccceeecccHHHHHHHcCchhhhhHHHHHHHHhhHHHHHHHhhhhcccccccccchhhHHhHHHHHHHHHHhchhhhhcc
Confidence 99999999999999999987765 45699999999999987643 3678888888999999999998888766556
Q ss_pred cchhHHHHHHHHHHHHHHH-HHhhhhcCCCCCCCCcccccCCCCCCCCCCCccccccccccCCCCchhHHHhHHHHHHHh
Q 043255 391 DSIFHFRVALVDDILLKLL-WQDYLFFGCSKGQNSQVSRMSKNPPEDGNLPSNVKKSDTLNMKYPKSYFQELGKCIVEIL 469 (1843)
Q Consensus 391 ~s~~~~~~~ll~~~l~pli-w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~~~~~~~~~l~~~~~~i~ 469 (1843)
.++.++...++.+.+.++| |.... .. .+++..|.. ...+. .+....++..+.
T Consensus 416 ~k~~~~~~~l~d~~l~~~i~w~~~~-~~---l~~~~~f~~-------------~ev~~----------~~~~~~~~l~l~ 468 (1312)
T KOG0803|consen 416 NKIEELEILLFDRCLQSLILWSLII-AV---LINSVPFFS-------------DEVMP----------HEKSDEDILPLT 468 (1312)
T ss_pred cchhhhhHhhHhhchhhhHHHHHhh-hh---hccccCCCc-------------ccccc----------chhchhhhhhhc
Confidence 6667888899999999966 66433 22 555544332 01100 011112211121
Q ss_pred hhhhhhhhhhHH-HH----HHHHHHHHHHHHh-h-ccccccchHHHHHHHHHhhhhhhhcCCCCcchhhhhhhhhhhccc
Q 043255 470 SGIYLLEHDLLS-SF----CTTFHETCLQVVQ-Q-KENLGLFSEEQIIKFLSLLEQHAIQKGEDWPLVYLVGPMLAKAFP 542 (1843)
Q Consensus 470 ~~~~l~~~~ll~-~~----~e~~~~~~~~~~~-~-~~~~~~~q~~~~~rf~~l~~~~~~~~~~~~~l~~lv~~~~~~~~~ 542 (1843)
.+.....+.++. .. .......|...+. . ..++- --+.+|+ ..|..
T Consensus 469 l~~~~~~~~ll~~f~~~e~~~~~l~~~~~~ll~~~~~d~~----~~~~~~~---~~~if--------------------- 520 (1312)
T KOG0803|consen 469 LGNLHLEQALLKRFLCKEEKKSFLDQCAPALLEWSLGDFC----LDAGNFG---HLHIF--------------------- 520 (1312)
T ss_pred ccchHHHHHHhhccCChHHHHHHHHHHHHHHHhhhhhhHH----hccccch---hHHHh---------------------
Confidence 111111111111 00 1111111111111 0 00000 0111111 01111
Q ss_pred ccccccccchHHHHHHHHHhhCchHHHHHHHhc--c---CCCccccchhhHHHhhhhchhhhhccCCCCchhhHHHHHhh
Q 043255 543 MIKSLDSVNGIRLLSVSISVFGPRKIVRELFIT--D---DGDQMVDSGSFLQVFKETFVPWCLDGYNHSMSSRLDLLLTL 617 (1843)
Q Consensus 543 ~i~~~~~~~~~~lLs~ll~~Fg~a~~v~~~l~~--~---~~~~~~~~~~f~~~~~~~~~~~l~~~~~s~s~~~vdiL~s~ 617 (1843)
.+......++.+...+..+|+...+...+.- . ..+.....+.++-.+...|.|+|..
T Consensus 521 --~~~~~~k~v~~i~~sl~~~g~~~~~~~~~~~S~~l~~~~d~~~~~~~~~~q~lv~f~~~~~~---------------- 582 (1312)
T KOG0803|consen 521 --LSSLLSKAVKLIELSISILGPREHVPRQILFSTNLKEYSDSVLGVEKEIIQFLVIFLPYCSN---------------- 582 (1312)
T ss_pred --cccccccchhhhhhhhhccCCCcchHHHHhhhhhHHHhhhhhccHHHHHHHHHHHHHHHHHH----------------
Confidence 1122222233333245556775433222221 1 1122234455665566677777774
Q ss_pred cchhhhHHhHHHHHHHHHhccCCCCCCCCCCCchHHHHHHHHHHhhhccCCCcccccccccCCCCCcccchhhhhHHHHH
Q 043255 618 LDEECFLDQWCAVMSYAANVKHSGVEPGSLEPSHVLVLAMLLEKLRDKITKPKVGEHSTNWQGSHLDHLHHELLDSIAVA 697 (1843)
Q Consensus 618 l~~~~f~~~w~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~L~~~~~~ 697 (1843)
+.+.+.|+.++...++.++... ..+..-.. .+-++.++.. .+++|+.- -..+.+
T Consensus 583 ---~~~~q~~s~i~~~~~~~~~~~~------e~~~~~~~-~l~~~~ds~~--------------~~~~~d~~--~~~~~s 636 (1312)
T KOG0803|consen 583 ---AVANQLPSFIMSSMLAWDITTL------ELLAEYYI-PLVQLFDSGE--------------LDKARDLL--VFFIGS 636 (1312)
T ss_pred ---HHHhcCccHHHHHHHHhhhhhH------HHHHHHHH-HHHHHHhhcc--------------chhhhHHH--HHHhcc
Confidence 3344455555555554442110 01111111 1111111110 01111000 000000
Q ss_pred hhhcCCCCCCchHHHHHHHhCCCCCCCcccccch--hHHHHHHHHHHHHHHHhhhcCCcccccccccccchhhhhhhhhc
Q 043255 698 VACSFPPFGTSDARLMRALLGGSTEGNQVSFVST--NILIMIFKELLKKLVPFLGESSFTWVRDASSLLTSEAKDFRFEI 775 (1843)
Q Consensus 698 ~~~~~~~~~~~~~~~l~a~l~~~~~~~~~~~ls~--~~~~~i~~~il~~L~~~L~~~~~~~~~~~~~~Ls~~~~~~~~~~ 775 (1843)
......+...+.+++......+++-...++.. +.+..-+..+...+-.....-+++- +...+++... .++..
T Consensus 637 --~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~l~~lc~--~~~~~i~~~~--~~~~i 710 (1312)
T KOG0803|consen 637 --TTLDAEGTLKVELFEELKEFLSQDIESFFLEILLNMLGENKAQVLETLDRNAKLYPLCN--DTRTSISKEK--LLSHI 710 (1312)
T ss_pred --cccchhhhhhHHHHHHHHHHhcchhHHhhHHHHHhhhhhhhhHHHHHHHHHhhhccccc--chhhhhhhHH--HHHhh
Confidence 00000111111222222221111111111110 0011111011111111111111110 0011111100 00000
Q ss_pred -----------------cccchhHHHHHHHHhhhccccccccccccccchHHHHHHHHHHHhhhhhccccccCCcchHHH
Q 043255 776 -----------------GKSVNVIEMAQFALDILDGSFFCLKRIDDESSLLSSISAALFIIDWEYSMATVLDDTLDDESM 838 (1843)
Q Consensus 776 -----------------~~s~~~i~~~~~al~~l~~~~~~l~~~~~~~~Lv~~lL~~~f~i~w~~~~~~~l~e~~~~~~~ 838 (1843)
+...+.+..+..+..++.....|.... .+.+.+. .+++.+ +....+
T Consensus 711 ~~~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----kl~~~l~-~l~~~~--------~~~~~~---- 773 (1312)
T KOG0803|consen 711 LPHAEVIFSLKFLELLEDTGFNLIAPLLDDRARPVQVLASIMFS----KLMPELP-SLVDDT--------LESSGN---- 773 (1312)
T ss_pred hhHHHHHhccchHHHHHhcCchHhhhhhhhhhccHHHHHHHHHH----HHhHHHH-HHHHHH--------HHhcCC----
Confidence 001111111222222221111111000 1111111 111111 001111
Q ss_pred HHhhhhhcchhhHHHHHhhhccccccccchhhHHHHHHHHHHHHhhhhhc-cccCCchhhhhhhHHHHHHHHHHhhcCCh
Q 043255 839 KKINARLNVCKSVHVFRSKINNGFWRSLNIDNRKKLWSILIRSVTNAIFK-EHNMKSDKLVSLCYSWMVEILEYLSQNPY 917 (1843)
Q Consensus 839 ~~~~~~~~v~~~~~~~~~~i~~~~~~sl~~~~l~~l~~~l~~~v~~~~~~-~~~~~~~~~~~l~~~W~~~ll~~~~~d~~ 917 (1843)
.+.=+.+.+...++.++..+|++.+-+.......++...+++.+.. ++..+-.....-...| ..++.+.--.-.
T Consensus 774 ----~~~f~~~~~~v~l~~~~~~~~~~~~~~i~~~~~~l~~~l~ks~~~~~~d~~~~~~~~~~~~~~-~~~l~~~~~~~~ 848 (1312)
T KOG0803|consen 774 ----EPLFSPPAAFVILKNMQCDLLKSVNLDIDQLQIVLLKRLSKSIVYRNGDLLDWKTILTCISRA-SLQLRYLFEEYS 848 (1312)
T ss_pred ----CcccCCcchhhhhccCCcccchhhhhhHhHHHHHHHHHHHhhhhhhccccchhhhhHHHHhhc-chHHHHHHHHhh
Confidence 1233566667888888999998877777777777778888874333 3333322111111111 111111000000
Q ss_pred hhhHHHHHhhcCCCCCCcccCCCCCCccccCCCCC-CCCccccccCC-CchhhHhHHHHHhhhccceEEecCCCCCCCCC
Q 043255 918 EEQNLLDQLLSGDATWPLWINPNLSTPKESDALNT-PNESLNIHVSG-HHRFVSLIDKIISKAGLQKVVAGHVTHACPSP 995 (1843)
Q Consensus 918 ~~~~~l~~ll~~~~~w~~w~~~~~s~~~~~~si~~-~~~~~~~~~~~-~~~~~~lv~~~~~~~g~~~v~~~~d~~~~~~~ 995 (1843)
+...-+..++-....||.|.++.... +..... ++..+-+.... -.+++.+++..+..++..+-.......+.
T Consensus 849 ~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~f--- 922 (1312)
T KOG0803|consen 849 DDMDKLNLLLYELLANPIELPNYSES---ALDVPNADPKIFVLEFLCYEIREVVFLDSLITALLCTRNILIAKDLEF--- 922 (1312)
T ss_pred hhhhchhhhHHHHHhcccccccchhh---hhccccCCcchhhHhHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhHHH---
Confidence 00000011122233778888877443 111111 12112111111 11345555555554432221111111111
Q ss_pred CCccccCcchhhHHHHHhhccCCCCCcchhhhhHHHHHHhhccccccccccchhhHHHHHHhhhhhccCCCcccccccCC
Q 043255 996 PEETINEVPSRAWLAAEVLCTWKWPGGNALDSFLPLLCSHAKSRNLASQQNLLDSIFDILLDGALVHGGNSSQSLFDIWP 1075 (1843)
Q Consensus 996 ~~~~~~si~~ra~~~~elL~~~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~l~~~~~e~L~~~a~~~~~~~~~~~~~~~~ 1075 (1843)
.-++|.--+.++++.|.++..++.+++...-+....... .....++.+.+..+|..++....+.....|.
T Consensus 923 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~l~i~~~~~--l~~s~il~~~~~~~a~~~~k~~~~~~~~~~~ 992 (1312)
T KOG0803|consen 923 --------MVRLWLEWKNLSEDETLGIIDLFAFLSVNSFLSILKISS--LLDSTILFDALTVLADVTVKSEELTNGILDI 992 (1312)
T ss_pred --------HHHHHHHHHHHhhhhhcchhhhhhhccCCchhhhhhHHH--HhHHHHHHHHHhcccccchhhHHHhccCccc
Confidence 123566555666677777666666654322222221110 0122236788888888776666566666666
Q ss_pred CCCcch-hhhhHHHHHHHHHHHHHhhcccccchhhHhHHHHHHHhhhhhhhhhccccccccchhhHHHhhhccccccCCC
Q 043255 1076 PLDDKV-ELIEEHFLRALVSLLVTLLKNDIWERDKAMILFDLLVNKLFVGEAINKNCLRILPPIITVLVRTLSYRSVGSN 1154 (1843)
Q Consensus 1076 ~~~~~~-~~~~~~~~r~L~~ll~~~~~~~~~~~~~a~~l~~~l~~~~~~~e~~~~~~l~~~~~~~~~ll~~l~~~~~~~~ 1154 (1843)
.....+ ..+..+..+.++..+.......-|++.....+. .+..++...--+.++..-.+.+..+...+....+
T Consensus 993 ~~~~~i~~~~~~~~~~~~~~~~k~~~~a~~~~~~s~l~~~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~si--- 1066 (1312)
T KOG0803|consen 993 IINLIIQLPITEPILSIIVESLKKLLVADLWGEKSLLQLS---TDLDFIIMEKLALWVGNVKIRAEEVISRLREFSI--- 1066 (1312)
T ss_pred cchhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhHHHHHhh---HHHHHHHHHHHHHHhhccchhHHHHHhHHHHhhh---
Confidence 653322 224566666666666665333333433333333 2223333333344444434444445555554432
Q ss_pred CCCCCCCCCCCCc-chhhhhhhhhhhhhccCCCccccccCCChhhHHHHHHhhccccccCccchhhhcccccchhhhHHH
Q 043255 1155 EYGRGVDSDTSEG-NQVQDTIRGWLQRTLLFPPLVTWQSGEDMEEWFQLVISCYPLSATGGAELFKLERNISHDERTLLL 1233 (1843)
Q Consensus 1155 ~~~~~~~~~~l~~-~~~~~~~~~~~~~a~~~p~Lv~~~~g~~~~~~~~lvl~cl~~~~~~~~~~l~~~~~i~~~~~~Ll~ 1233 (1843)
..+ ++.. .....-++.|..+...+++++.|.+|.+.. .++ +..+.-+....-+++
T Consensus 1067 --~~~----~~~~~~~~~~~~r~~c~~~f~~~~l~~w~s~ed~s--------------~~~----~~~r~~~~~v~~~~~ 1122 (1312)
T KOG0803|consen 1067 --SHG----SNDDDLPFLSCLRAFCPNKFHTECLVKWKSGEDIS--------------ENC----PLCRELSTIVMVLVL 1122 (1312)
T ss_pred --hcc----ccchhhhHHHHHHHhhhhhhhchhhHHhhcccccc--------------ccc----cchhhhhHHHHHHhh
Confidence 111 2222 222222234457778899999999998733 111 111222223455555
Q ss_pred HHHHHhhccCC-CCCCchhHHHHHHHHHHHHhhcccccCCcCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhhccCCCCC
Q 043255 1234 DLFRKQRHGGG-IANQLPVVQVLLSQLMVISVGYCWKEFNEDDWSFVFSNLSSWIQSAVVIMEEAAENVNDAIADSSSSN 1312 (1843)
Q Consensus 1234 ~~~~kq~~~~~-~~~~l~~~Ei~l~~ll~~~v~~~~~el~~~~Wd~i~~~l~~Wi~s~~~~~e~~~e~v~~~~~~~~~~~ 1312 (1843)
...+.|. ++ .-.++.-+-+.++|+-..-+.||--.-+...||.++....- +.|++....+++.......
T Consensus 1123 ~~~r~~~--~~~~~~~l~~~~i~~~~~~~~~~s~~~~~~~~~~~d~~~~n~~~------~l~~~~~~~~~~~~~~~~~-- 1192 (1312)
T KOG0803|consen 1123 YLKRLHN--ASTGPYQLDLTLIPLENLKDSGSSYELLKAYCDVWDSFFSNAVN------YLMLLQEFEVRDVIIGCRI-- 1192 (1312)
T ss_pred Chhhhcc--chhhhHhhhhHHHHHHHhhhhhhHHHHHHHhhcchhHHHHHHHH------HHHhhcccchhhHHHHHHH--
Confidence 5555555 33 44555556666899999999999999999999999999884 6788888888888763311
Q ss_pred chhhHHHHHHHhhccCCCCccchhhhHHHHHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q 043255 1313 NLDDIIEKLEKIVFISDPSPINNARNAILSFSLCHNILLCHGAEDSDNSNPLRTERWDRVRNRIAEGILRLFFCTGICEA 1392 (1843)
Q Consensus 1313 ~~~~~l~~L~~~~~~~~~~p~~~~~~~~asl~L~~~L~~~~~~~~~d~l~~l~~d~W~~~~~~~~e~il~Ll~~~~~~ea 1392 (1843)
+-++... .+-.+..... ++. |+.-+....+...+...-.+.+..+.|..+.+....+++|
T Consensus 1193 ------~~~~~~~--~~~~~l~~~~-~~~-f~~k~~~~~lk~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---------- 1252 (1312)
T KOG0803|consen 1193 ------QERKQER--KLKEGLKKSE-VLS-FCRKNGTPGLKAVTLELKKESLSFEILLKFGFVLSLTILR---------- 1252 (1312)
T ss_pred ------HHHHhhc--ccccccchHH-HHH-HHHHhCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----------
Confidence 1111111 1111222221 222 2222222222222211112233457888888888888887
Q ss_pred HHhhcccchhhhhccccchhhhHHHHHHhhhhcCCccchhccchhhhhcccCCCChhhHHHHHh
Q 043255 1393 IASSYGLESALVIASSRLDHICFWELVASSVVNSSPHVKDRAVKSVEFWGLRKGPISALYAILF 1456 (1843)
Q Consensus 1393 ~~~s~~~~a~~~i~~~r~~~~~~~e~v~~~l~~~s~~~~~~a~~~~~~w~~~~~~i~~l~~ll~ 1456 (1843)
++.+-..........|..+.++| +++..-....++++...+...++|++.+ ++.++.+++
T Consensus 1253 -~~~~~~~~~~~~~~~~~~l~~~~-li~~~~~~~t~~~~~~~~~~~~~~dl~~--~~~~~~i~~ 1312 (1312)
T KOG0803|consen 1253 -RKKAEIFKASKTNNFRSILLQFW-LIMRKFPIITPRIKLRKCLCFELIDLNR--IKNLVAIKF 1312 (1312)
T ss_pred -HhhcccccHHHHHHHHHHHHHHH-HHHhhccccchhhhHHHHHHHHHhhhhh--hhhhhhhcC
Confidence 12222233344455788899999 9999988888999999999999999888 888877653
No 3
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.6e-12 Score=167.38 Aligned_cols=280 Identities=22% Similarity=0.279 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-chhHHHHhhcCCCchhhhhhcc---ccCCCCchhhhHHhhhhc
Q 043255 1539 VNVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSAN-TVILDCIFQHIPLELCEMQDLK---KKDGDLPAEVSAAATAAK 1614 (1843)
Q Consensus 1539 ~~yLl~W~Lvl~~~~~~~~s~~~R~~y~~~lk~~~~-~~lL~~lF~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 1614 (1843)
.++++.|.+++.+.... +..+|..|..+..+.+. ..++...+..++...-+..... ..+..
T Consensus 820 ~~d~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------- 884 (1312)
T KOG0803|consen 820 NGDLLDWKTILTCISRA--SLQLRYLFEEYSDDMDKLNLLLYELLANPIELPNYSESALDVPNADPK------------- 884 (1312)
T ss_pred ccccchhhhhHHHHhhc--chHHHHHHHHhhhhhhchhhhHHHHHhcccccccchhhhhccccCCcc-------------
Confidence 47889999999999965 77999999999999877 6666666655544430111110 00000
Q ss_pred cccccCCccccccCCCCCC-hhhHHHHHHHHHHHHHHHhhHHHHHHH---hhchhhhhHHHHHHHhHHhcCHHHHHHHHH
Q 043255 1615 HAITTGSLLFPVESLWPVD-PVKLASLAGAIYGLMLCVLPAYVRGWF---SDLRDRSISSLVESFTRVWCSPPLIANELS 1690 (1843)
Q Consensus 1615 ~~i~~~~~~~~~e~~~~~~-~~~~~~l~~~ly~~~l~~lP~~vr~W~---~~~~~r~~~~~ve~~t~~~~Sp~li~~el~ 1690 (1843)
+.-+...-+ +-.+... ......|+++.+.+..+.++.+++.|+ +-+.+. +-..+.-|+..+..|.++..+..
T Consensus 885 --~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~a~~~~n~~l~i~~~~ 960 (1312)
T KOG0803|consen 885 --IFVLEFLCY-EIREVVFLDSLITALLCTRNILIAKDLEFMVRLWLEWKNLSEDE-TLGIIDLFAFLSVNSFLSILKIS 960 (1312)
T ss_pred --hhhHhHHHH-hHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-hcchhhhhhhccCCchhhhhhHH
Confidence 000000000 0000000 223567999999999999999999999 555444 67899999999999999999999
Q ss_pred HHHhccCCCCceEEEEeccccEEEEEEEecCCceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhccc
Q 043255 1691 QIKKANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNG 1770 (1843)
Q Consensus 1691 ~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~ide~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnG 1770 (1843)
.++..+.-.+.+++.+...++....++.+++.-....|.+|-++|+..+-|.+.++.|.....|+.|+++.. +..++
T Consensus 961 ~l~~s~il~~~~~~~a~~~~k~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~k~~~~a~~~~~~s~l~~~---~~~~~ 1037 (1312)
T KOG0803|consen 961 SLLDSTILFDALTVLADVTVKSEELTNGILDIIINLIIQLPITEPILSIIVESLKKLLVADLWGEKSLLQLS---TDLDF 1037 (1312)
T ss_pred HHhHHHHHHHHHhcccccchhhHHHhccCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhHHHHHhh---HHHHH
Confidence 888765566778888888899999999999999999999999999999999999999999999999999886 66778
Q ss_pred cHHHHHHHHHHhcccccCCCc----ccccccccccccCccccccccc--ccCCccCHhhHHHHHhcCCCC-CCCCCCCCC
Q 043255 1771 ALAEAIRIWKRNFDKEFEGVE----ECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFSTSHKS-SCPLCQSPF 1843 (1843)
Q Consensus 1771 si~d~l~~~k~nv~~~~~g~e----eCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~s~~s-tCPlCR~~~ 1843 (1843)
.+.+....|.+|+...+.+.. +|+||+...+. .+|-..|. .|.+.||..|+++|......+ +||+||.++
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~---~~~~~~~~r~~c~~~f~~~~l~~w~s~ed~s~~~~~~r~~~ 1114 (1312)
T KOG0803|consen 1038 IIMEKLALWVGNVKIRAEEVISRLREFSISHGSNDD---DLPFLSCLRAFCPNKFHTECLVKWKSGEDISENCPLCRELS 1114 (1312)
T ss_pred HHHHHHHHHhhccchhHHHHHhHHHHhhhhccccch---hhhHHHHHHHhhhhhhhchhhHHhhccccccccccchhhhh
Confidence 888888888888766655554 66777766653 35555555 599999999999999988878 999999863
No 4
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.00 E-value=1.3e-10 Score=112.27 Aligned_cols=63 Identities=33% Similarity=0.898 Sum_probs=51.0
Q ss_pred HHHHHhcccccCCCcccccccccccc--cCccccccccc----ccCCccCHhhHHHHHhcC-CCCCCCCCCCCC
Q 043255 1777 RIWKRNFDKEFEGVEECPICYSVIHT--ANHSLPRLACK----TCKHKFHSACLYKWFSTS-HKSSCPLCQSPF 1843 (1843)
Q Consensus 1777 ~~~k~nv~~~~~g~eeCaICys~~~~--~d~~lP~~~C~----~C~h~FH~~CL~kWf~~s-~~stCPlCR~~~ 1843 (1843)
..|+.++. +.+.|+||+..|+. .+-++|...|+ +|+|.||.+||++|+++. .+.+||+||++|
T Consensus 12 a~W~Wd~~----~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 12 ATWKWDVA----NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred EEEEEecC----CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 34555443 37899999999994 34678888887 899999999999999974 468999999986
No 5
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.76 E-value=1.2e-09 Score=103.27 Aligned_cols=52 Identities=44% Similarity=1.029 Sum_probs=26.5
Q ss_pred cccccccccccccCccccccccc--ccCCccCHhhHHHHHhcCCCC---------CCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFSTSHKS---------SCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~s~~s---------tCPlCR~~~ 1843 (1843)
.+|+|||+.+. .+.++|++.|. +|++.||..||++||++..++ +||+|++++
T Consensus 3 ~~C~IC~~~~~-~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRL-DDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS--TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEec-CCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 58999999987 45678999998 999999999999999953222 699999864
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=3.5e-09 Score=91.10 Aligned_cols=44 Identities=34% Similarity=1.027 Sum_probs=34.3
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR 1840 (1843)
++|+||++.+..++. ..-.+|+|.||..||.+|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~~~----~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEK----VVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSC----EEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCe----EEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 489999999985332 2233599999999999999974 6999998
No 7
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.67 E-value=8.7e-09 Score=98.34 Aligned_cols=49 Identities=31% Similarity=0.903 Sum_probs=35.8
Q ss_pred CcccccccccccccC--cccccccc----cccCCccCHhhHHHHHhcCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTAN--HSLPRLAC----KTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d--~~lP~~~C----~~C~h~FH~~CL~kWf~~s~~stCPlCR 1840 (1843)
.+.|+||++.+.... .+.|...| ..|||.||.+||.+|++. +++||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 457999999995321 12222233 379999999999999996 46999998
No 8
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.62 E-value=1.6e-08 Score=95.32 Aligned_cols=52 Identities=35% Similarity=0.892 Sum_probs=43.0
Q ss_pred Cccccccccccccc-----Cccccccccc----ccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTA-----NHSLPRLACK----TCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~-----d~~lP~~~C~----~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
++.|+||...+... .+..|.-.|+ .|+|.||.+||++|+.+ ++.||+||++|
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCcee
Confidence 57899999887642 1224777887 89999999999999998 68999999986
No 9
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.4e-08 Score=93.42 Aligned_cols=55 Identities=33% Similarity=0.865 Sum_probs=46.8
Q ss_pred CCcccccccccccc--cCccccccccc----ccCCccCHhhHHHHHhcC-CCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHT--ANHSLPRLACK----TCKHKFHSACLYKWFSTS-HKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~--~d~~lP~~~C~----~C~h~FH~~CL~kWf~~s-~~stCPlCR~~~ 1843 (1843)
+.+.|.||...|.. .+-++|.--|+ .|.|.||.+||++|+.+. ++..||+||+.|
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 45699999999985 35678888887 899999999999999965 356899999876
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.6e-08 Score=113.38 Aligned_cols=52 Identities=33% Similarity=0.858 Sum_probs=42.6
Q ss_pred CCccccccccc-ccccCccccccc-----ccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSV-IHTANHSLPRLA-----CKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~-~~~~d~~lP~~~-----C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
+...|.||+++ ||+++.++|+-. -.+|||.||-+||+.|+++ +.|||+||.|
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCc
Confidence 35589999999 887666666532 2389999999999999997 4699999987
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.4e-08 Score=110.75 Aligned_cols=48 Identities=33% Similarity=0.884 Sum_probs=40.2
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.||+||++.|...|+ ..-.+|+|.||..|+.||+... ++.||+||.++
T Consensus 324 veCaICms~fiK~d~----~~vlPC~H~FH~~Cv~kW~~~y-~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDR----LRVLPCDHRFHVGCVDKWLLGY-SNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccce----EEEeccCceechhHHHHHHhhh-cccCCccCCCC
Confidence 599999999974442 4556899999999999999964 68999999874
No 12
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.45 E-value=2e-07 Score=106.60 Aligned_cols=116 Identities=17% Similarity=0.431 Sum_probs=97.1
Q ss_pred eEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHhcccccCCCccccccccccc
Q 043255 1724 MDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGA--LAEAIRIWKRNFDKEFEGVEECPICYSVIH 1801 (1843)
Q Consensus 1724 ~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGs--i~d~l~~~k~nv~~~~~g~eeCaICys~~~ 1801 (1843)
+.|.++.|+.||-..++|...+..|+++.+.+....+++.+|.-..|- |.+-++.-+.-+....-....|.||+.-|.
T Consensus 47 vtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa 126 (368)
T KOG4445|consen 47 VTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFA 126 (368)
T ss_pred EEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeec
Confidence 578889999999999999999999999999999999999998865553 678888888888888888899999999997
Q ss_pred ccCcccccccccccCCccCHhhHHHHHhcC---------------------CCCCCCCCCCCC
Q 043255 1802 TANHSLPRLACKTCKHKFHSACLYKWFSTS---------------------HKSSCPLCQSPF 1843 (1843)
Q Consensus 1802 ~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s---------------------~~stCPlCR~~~ 1843 (1843)
.++ ...-..|.|.||.+||.+++... .+..||+||..+
T Consensus 127 ~~~----~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 127 SSP----AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred CCC----ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 543 34556899999999998877621 123799999864
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.42 E-value=1.4e-07 Score=108.36 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=39.0
Q ss_pred CCcccccccccccccCcccc-cccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLP-RLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP-~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..++||||++.+........ -..-.+|+|.||..||.+|++. +++||+||.++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEe
Confidence 45799999998764221000 0123479999999999999985 57999999864
No 14
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-07 Score=113.57 Aligned_cols=47 Identities=30% Similarity=0.904 Sum_probs=40.5
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
+.|+||++.|..+|+ ++-.+|+|.||..||.+|+... +..||+|+..
T Consensus 230 ~~CaIClEdY~~Gdk----lRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDK----LRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCe----eeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 489999999997763 4557999999999999999975 6789999974
No 15
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.8e-07 Score=98.53 Aligned_cols=119 Identities=24% Similarity=0.509 Sum_probs=76.1
Q ss_pred ccccEEEEEEEecCCceEEEEecCCCCCCCcceEeeccccccCH--HHHHHHHHHHHHHHHhccccHHHH------HHHH
Q 043255 1708 KSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISE--VKQRKWLMSMMLFVRNQNGALAEA------IRIW 1779 (1843)
Q Consensus 1708 ~~~~EV~a~Y~ide~~~el~I~lP~~YPL~~v~V~~~~~vgvse--~k~r~Wll~~~~~i~~qnGsi~d~------l~~~ 1779 (1843)
..++.++...+||-....| ||.++-++.-.|..+..+.... .-|. ..|+..+. +..-
T Consensus 90 a~GNd~~I~ieiD~k~Pkm---LPEcf~lgadhv~~P~gie~~~~i~L~d------------Pe~~~led~kd~lE~df~ 154 (234)
T KOG3268|consen 90 AAGNDCIIIIEIDFKDPKM---LPECFELGADHVSFPEGIECILGIELPD------------PEGLQLEDDKDQLECDFC 154 (234)
T ss_pred hcCCceEEEEEecCCCCcc---chhhHhhccccccccccceEEeccccCC------------ccccccccccceeeeCcc
Confidence 3467788888999887777 8999999877776554332210 0010 11111110 0000
Q ss_pred HHhcccccCCCcccccccccccccCccccccccc--ccCCccCHhhHHHHHh---cCCCC------CCCCCCCCC
Q 043255 1780 KRNFDKEFEGVEECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFS---TSHKS------SCPLCQSPF 1843 (1843)
Q Consensus 1780 k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~---~s~~s------tCPlCR~~~ 1843 (1843)
.+.+-..-+....|.|||.+-- +..+|+..|. +||+.||+-||+.|++ +++++ .||+|..|+
T Consensus 155 a~a~Lekdd~~~~cgicyayql--dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 155 AAAFLEKDDELGACGICYAYQL--DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred HHHhcCcchhhhcccceeeeec--CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 1111112223457999998754 6778999998 8999999999999999 55555 899999874
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.09 E-value=2.1e-06 Score=95.84 Aligned_cols=54 Identities=31% Similarity=0.803 Sum_probs=38.9
Q ss_pred CCCcccccccccccccCccccc----ccccccCCccCHhhHHHHHhcC----CCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPR----LACKTCKHKFHSACLYKWFSTS----HKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~----~~C~~C~h~FH~~CL~kWf~~s----~~stCPlCR~~~ 1843 (1843)
....+|+||++.+... +.|. -.-..|+|.|+-.||.+|.++. ...+||+||..|
T Consensus 168 SkE~eCgICmE~I~eK--~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSK--RLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccc--cccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3457999999988632 1111 1234899999999999999853 134699999864
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.08 E-value=2.6e-06 Score=71.85 Aligned_cols=45 Identities=38% Similarity=1.034 Sum_probs=36.0
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+|+||++.+. .. ....+|+|.||..|+.+|++. ++..||+||..+
T Consensus 1 ~C~iC~~~~~-~~-----~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR-EP-----VVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh-Cc-----eEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 5999999983 11 233469999999999999996 457899999864
No 18
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.4e-06 Score=86.20 Aligned_cols=62 Identities=34% Similarity=0.852 Sum_probs=46.2
Q ss_pred HHHHHHHhcccccCCCcccccccccccc------cCccccccccc----ccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1775 AIRIWKRNFDKEFEGVEECPICYSVIHT------ANHSLPRLACK----TCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1775 ~l~~~k~nv~~~~~g~eeCaICys~~~~------~d~~lP~~~C~----~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
++.+|.-.+ .++.|+||...+-. .+...+.-.|. .|+|.||.+||.+|+++ ++.||+|.++|
T Consensus 36 AvAlWaWDi-----~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt--r~vCPLdn~eW 107 (114)
T KOG2930|consen 36 AVALWAWDI-----VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT--RNVCPLDNKEW 107 (114)
T ss_pred eeeeeeeee-----eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh--cCcCCCcCcce
Confidence 345555444 36789999887652 22234556676 89999999999999997 68999999875
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3e-06 Score=108.94 Aligned_cols=49 Identities=35% Similarity=0.908 Sum_probs=39.9
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
..+.|+||.+.++...+..| +-.+|+|.||.+||++||+. ++|||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~--~rL~C~Hifh~~CL~~W~er--~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITP--KRLPCGHIFHDSCLRSWFER--QQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhcccccccc--ceeecccchHHHHHHHHHHH--hCcCCcchh
Confidence 46799999999997543222 22479999999999999997 689999997
No 20
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.88 E-value=8.7e-06 Score=90.48 Aligned_cols=49 Identities=33% Similarity=0.817 Sum_probs=37.8
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC--------------CCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--------------HKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--------------~~stCPlCR~~~ 1843 (1843)
.+.-+|+||++.+. + | ....|||.|+..||.+|+..+ ++.+||+||+++
T Consensus 16 ~~~~~CpICld~~~--d---P--VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 16 GGDFDCNICLDQVR--D---P--VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCccCCccCCCcCC--C---c--EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 35568999999875 2 2 235799999999999998642 235899999864
No 21
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.4e-05 Score=92.54 Aligned_cols=49 Identities=31% Similarity=0.794 Sum_probs=41.4
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..++...|.+|++..+. -.|.+|||.|.=.||..|... +..||+||.++
T Consensus 235 i~~a~~kC~LCLe~~~~-------pSaTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~ 283 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSN-------PSATPCGHIFCWSCILEWCSE--KAECPLCREKF 283 (293)
T ss_pred CCCCCCceEEEecCCCC-------CCcCcCcchHHHHHHHHHHcc--ccCCCcccccC
Confidence 45566799999998762 358899999999999999996 67899999864
No 22
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.4e-05 Score=96.60 Aligned_cols=55 Identities=33% Similarity=0.850 Sum_probs=39.8
Q ss_pred CCCcccccccccccccCcc---c-----cc--ccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHS---L-----PR--LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~---l-----P~--~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+...+|+||+..+.-.... + +. ---.+|+|.||..||.+|..+. +-.||.||.++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 3456899999988632111 1 11 1223899999999999999973 56999999874
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.59 E-value=2.8e-05 Score=65.78 Aligned_cols=41 Identities=39% Similarity=0.961 Sum_probs=34.6
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
|+||++.+.... .-.+|||.|+..||.+|++..+...||+|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987432 34579999999999999997667899998
No 24
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0063 Score=82.79 Aligned_cols=312 Identities=17% Similarity=0.229 Sum_probs=205.8
Q ss_pred hhHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHH
Q 043255 47 PQWAFEYKRLLLD-YSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLD 125 (1843)
Q Consensus 47 p~W~~lY~rLsiD-~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~ 125 (1843)
|.-++-|-.||.+ ....=|..|.-=++.|++++|-.++||+|+++|=-+-=+|||+.-|.++-..=|...-+.. ..
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~---k~ 1031 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS---KK 1031 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh---HH
Confidence 4556777788884 6678888888889999999999999999999999999999999999999999998888764 35
Q ss_pred HHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccc--------cC
Q 043255 126 ALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENIT--------AE 197 (1843)
Q Consensus 126 a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~--------~e 197 (1843)
++.-+..||++-+-.|+ -.|--||--+|.+||+-||+.=+.++.. |.+. .-
T Consensus 1032 ~vd~y~neIl~eLL~~l-----------------t~kewRVReasclAL~dLl~g~~~~~~~----e~lpelw~~~fRvm 1090 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNL-----------------TSKEWRVREASCLALADLLQGRPFDQVK----EKLPELWEAAFRVM 1090 (1702)
T ss_pred HHHHHHHHHHHHHHHhc-----------------cchhHHHHHHHHHHHHHHHcCCChHHHH----HHHHHHHHHHHHHH
Confidence 66788889998887776 2233688888888888887542111100 0000 00
Q ss_pred cchhhhHHHHHhh-----------------------hhHhhhccchhHHhh-hccCChhHHHHHHHHHHHHHhcCCcccc
Q 043255 198 PKHASKARAIAVS-----------------------FSEKLFSDHKYFLDF-LKSQSVSIRSATYSVLKSYIKNIPHVFN 253 (1843)
Q Consensus 198 ~~~~sk~~~~~i~-----------------------~~e~lf~~~k~fW~~-~k~~~p~VR~A~y~LL~tll~~~p~~l~ 253 (1843)
++..+.+|.++-. ....++ .++|+- .-|+.+.|||....++.-+.+..+..+.
T Consensus 1091 DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL---PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1091 DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL---PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH---HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 0001112222111 011111 123322 2388999999999999999999998887
Q ss_pred cchhhHHHHHHHcccCCCCCcchH-------------------------HHHHHHHHHHhcCCCceeecCcchhhhHHHH
Q 043255 254 EGNLKIIATAILGAFQEKDPVCHS-------------------------SMWDAILLLSKRFPDCWTVLNAQKTILNRFW 308 (1843)
Q Consensus 254 ~~~~k~i~~avl~~l~e~d~~~~~-------------------------~lWealL~l~k~~Pd~W~~~n~kK~~lprL~ 308 (1843)
+ +..++-+.++.++++-+|.+.. +||+++=..... .++..--...||+-
T Consensus 1168 P-~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~-----iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1168 P-HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINY-----IDISVLEELIPRLT 1241 (1702)
T ss_pred c-hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHh-----hhHHHHHHHHHHHH
Confidence 5 5777889999999999887643 333333322221 12233456889999
Q ss_pred HHHHccCCCCCccchhhHHH-HhhhCCcCcCCChHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhhccccC
Q 043255 309 HFLKNGCFGSQQVSYPALVL-FLDVVPPKAVAADKFFQDFFNSLWAGRNEPHSSNSDHKAFFRAFKECFLWGLLNASRYF 387 (1843)
Q Consensus 309 ~~Lr~G~~Gsa~~~yp~Llp-lLs~iP~~vl~~~~f~~~ff~al~~Gl~~r~~s~s~~~a~~say~Ec~~~~l~~~~~~~ 387 (1843)
+.+|+|-+=+..+.+....- +...++.+.-+ +.-.+|.+++.|+..|.+ +.+. +|.--.-|+++-..
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP---~sgKll~al~~g~~dRNe--sv~k----afAsAmG~L~k~Ss--- 1309 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTP---YSGKLLRALFPGAKDRNE--SVRK----AFASAMGYLAKFSS--- 1309 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCc---chhHHHHHHhhccccccH--HHHH----HHHHHHHHHHhcCC---
Confidence 99998766566666655444 44556766532 455678888899887653 2333 33444455554443
Q ss_pred CCCcchhHHHHHHHHHHHHHHH
Q 043255 388 DGVDSIFHFRVALVDDILLKLL 409 (1843)
Q Consensus 388 ~~~~s~~~~~~~ll~~~l~pli 409 (1843)
+ +-..+++++.+.+++
T Consensus 1310 --~----dq~qKLie~~l~~~l 1325 (1702)
T KOG0915|consen 1310 --P----DQMQKLIETLLADLL 1325 (1702)
T ss_pred --h----HHHHHHHHHHHHHHh
Confidence 2 225678777775544
No 25
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.51 E-value=4.7e-05 Score=64.17 Aligned_cols=39 Identities=33% Similarity=1.054 Sum_probs=31.2
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
|+||++.+.. | ....+|||.|+..|+.+|++. +.+||+|
T Consensus 1 C~iC~~~~~~-----~-~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----P-VVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----E-EEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC-----c-CEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999998863 2 245689999999999999997 4899998
No 26
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.43 E-value=6.6e-05 Score=66.58 Aligned_cols=45 Identities=33% Similarity=0.884 Sum_probs=35.6
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++... + ....+|||. |...|+.+|+++ +.+||+||+++
T Consensus 2 ~~~C~iC~~~~~--~-----~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPR--D-----VVLLPCGHLCFCEECAERLLKR--KKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBS--S-----EEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-
T ss_pred cCCCccCCccCC--c-----eEEeCCCChHHHHHHhHHhccc--CCCCCcCChhh
Confidence 358999999754 2 345689999 999999999994 68999999874
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.40 E-value=9e-05 Score=65.82 Aligned_cols=46 Identities=30% Similarity=0.815 Sum_probs=32.8
Q ss_pred ccccccccccccCcccccccccccC---CccCHhhHHHHHhcCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCK---HKFHSACLYKWFSTSHKSSCPLCQ 1840 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~---h~FH~~CL~kWf~~s~~stCPlCR 1840 (1843)
.|.||++... .+..+. ..|. |+ |.||..||.+|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~-~PC~-C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLV-SPCR-CKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeE-eccc-cCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999322 222221 2232 33 899999999999998888999995
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.37 E-value=0.00011 Score=59.77 Aligned_cols=39 Identities=33% Similarity=1.077 Sum_probs=30.8
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
|+||++... + ....+|+|.||..|+.+|++. ++.+||+|
T Consensus 1 C~iC~~~~~--~-----~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK--D-----PVVLPCGHTFCRSCIRKWLKS-GNNTCPIC 39 (39)
T ss_pred CCcCccCCC--C-----cEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence 899999832 1 223479999999999999993 46789998
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00012 Score=82.85 Aligned_cols=47 Identities=36% Similarity=0.990 Sum_probs=37.0
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCC-CCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKS-SCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~s-tCPlCR~~ 1842 (1843)
+.-+|-|||+.-+ | |-+. -|||-|.=.|||+|+.++.++ .||+|+..
T Consensus 46 ~~FdCNICLd~ak--d---PVvT--lCGHLFCWpClyqWl~~~~~~~~cPVCK~~ 93 (230)
T KOG0823|consen 46 GFFDCNICLDLAK--D---PVVT--LCGHLFCWPCLYQWLQTRPNSKECPVCKAE 93 (230)
T ss_pred CceeeeeeccccC--C---CEEe--ecccceehHHHHHHHhhcCCCeeCCccccc
Confidence 3459999999765 2 4443 499999999999999987555 57999974
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.24 E-value=0.00023 Score=65.54 Aligned_cols=43 Identities=21% Similarity=0.567 Sum_probs=36.5
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.||||...+.. | .+.+|||.|...||.+|++. +.+||+|+.++
T Consensus 3 ~Cpi~~~~~~~-----P--v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVMKD-----P--VILPSGQTYERRAIEKWLLS--HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcCCC-----C--EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCC
Confidence 59999999863 3 34589999999999999997 57999999874
No 31
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.10 E-value=0.00027 Score=60.79 Aligned_cols=40 Identities=38% Similarity=0.904 Sum_probs=30.1
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCC--CCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKS--SCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~s--tCPlC 1839 (1843)
||||+++|.. -.. ..|||.|-..||.+|.+..+.. .||.|
T Consensus 1 CpiC~~~~~~-Pv~------l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-PVS------LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-EEE-------SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-ccc------cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999984 222 3699999999999999976554 79998
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.00044 Score=85.19 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=39.2
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.++..-.|+||...+.. |. ..+|+|.|+..||..|+.. +..||+||.++
T Consensus 22 ~Le~~l~C~IC~d~~~~-----Pv--itpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~ 70 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDV-----PV--LTSCSHTFCSLCIRRCLSN--QPKCPLCRAED 70 (397)
T ss_pred ccccccCCCcCchhhhC-----cc--CCCCCCchhHHHHHHHHhC--CCCCCCCCCcc
Confidence 45556699999999863 32 3579999999999999986 45899999863
No 33
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00037 Score=76.09 Aligned_cols=48 Identities=31% Similarity=0.836 Sum_probs=38.0
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
++.-.||||+..+... .| .-..|||.|.+.||..-++. ..+||+||+.
T Consensus 129 ~~~~~CPiCl~~~sek---~~--vsTkCGHvFC~~Cik~alk~--~~~CP~C~kk 176 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK---VP--VSTKCGHVFCSQCIKDALKN--TNKCPTCRKK 176 (187)
T ss_pred ccccCCCceecchhhc---cc--cccccchhHHHHHHHHHHHh--CCCCCCcccc
Confidence 4556899999998742 22 22469999999999999996 4799999964
No 34
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.86 E-value=0.00075 Score=58.48 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=34.6
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
+|+||+..+.. +.. ..-.+|||.|...|+.+.. .....||+||+
T Consensus 1 ~C~~C~~~~~~-~~~---~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERR---PRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCC---eEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 59999999932 221 3456899999999999998 24579999995
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.83 E-value=0.00043 Score=84.10 Aligned_cols=46 Identities=35% Similarity=1.017 Sum_probs=35.4
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
....||+|++-+..... ...-..|.|.||..|+.+|-. ++||+||.
T Consensus 174 ELPTCpVCLERMD~s~~---gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTT---GILTILCNHSFHCSCLMKWWD----SSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCcccc---ceeeeecccccchHHHhhccc----CcChhhhh
Confidence 45689999999875321 122236999999999999965 69999995
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.48 E-value=0.03 Score=64.22 Aligned_cols=186 Identities=19% Similarity=0.291 Sum_probs=121.7
Q ss_pred hcCChhhHHHHHHHHHHHHhcc-CcCcccchhhhHH---HHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhh
Q 043255 16 ARKDPITKLKALSSLSALLKEK-SGKDIAPIIPQWA---FEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLM 91 (1843)
Q Consensus 16 ~KKD~tTK~KALqeL~~lv~~~-~~~~l~~iLp~W~---~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~ 91 (1843)
...|=..|.+||+.|..++... +.+....+.+.-. ..+.+...|.--.|-..|-.+...+....|+++.||+..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5567779999999999999876 2222333333333 33344455666667788888999999999999999999999
Q ss_pred hhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHH
Q 043255 92 GPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSL 171 (1843)
Q Consensus 92 g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL 171 (1843)
|+-+--.-|+.+.++.+|.+++...+..- . + +.|++
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~----------~-----~-------------------------~~~~~---- 132 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESC----------S-----Y-------------------------SPKIL---- 132 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS----------------H---------------------------HHH----
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHC----------C-----c-------------------------HHHHH----
Confidence 99999999998999999988887554320 0 0 00110
Q ss_pred HHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCC--
Q 043255 172 LALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIP-- 249 (1843)
Q Consensus 172 ~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p-- 249 (1843)
+. .+....+|++|.||..+.+++..++...|
T Consensus 133 ------~~-----------------------------------------~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 133 ------LE-----------------------------------------ILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp ------HH-----------------------------------------HHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred ------HH-----------------------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 00 01122567899999999999999999988
Q ss_pred -cccccc-hhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCC
Q 043255 250 -HVFNEG-NLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPD 292 (1843)
Q Consensus 250 -~~l~~~-~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd 292 (1843)
..+... .++.+.+++...+.|.+|.+-...=+++..+.+.+|+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 444322 2467888888999999999999988888888888776
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0009 Score=76.68 Aligned_cols=52 Identities=25% Similarity=0.653 Sum_probs=38.7
Q ss_pred CcccccccccccccC---cccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTAN---HSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d---~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
+.-|+||-.-+..+. .-+.+..-..|+|.||..||.-|----.+.|||+|.+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHH
Confidence 457999988776422 1122222337999999999999998777889999986
No 38
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.00076 Score=80.13 Aligned_cols=49 Identities=31% Similarity=0.810 Sum_probs=39.9
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
|.+.--|+||++.+.. .+. -+.|.|.|...||.+-|+.. +++||.||+.
T Consensus 40 ~~~~v~c~icl~llk~-tmt-----tkeClhrfc~~ci~~a~r~g-n~ecptcRk~ 88 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKK-TMT-----TKECLHRFCFDCIWKALRSG-NNECPTCRKK 88 (381)
T ss_pred hhhhhccHHHHHHHHh-hcc-----cHHHHHHHHHHHHHHHHHhc-CCCCchHHhh
Confidence 4456689999999984 232 34699999999999999974 7999999974
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.22 E-value=0.0018 Score=74.72 Aligned_cols=46 Identities=33% Similarity=0.815 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCcccccccc-cccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLAC-KTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C-~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+...-|-||-+.|.. .| .+|||.|.+-||...+.+ +..||+||.++
T Consensus 23 Ds~lrC~IC~~~i~i--------p~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISI--------PCETTCGHTFCSLCIRRHLGT--QPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeec--------ceecccccchhHHHHHHHhcC--CCCCccccccH
Confidence 344579999998873 34 379999999999999996 68999999864
No 40
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.21 E-value=0.0018 Score=76.08 Aligned_cols=44 Identities=34% Similarity=0.838 Sum_probs=36.4
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
-.|.||+++|.. | ...+|+|.|.+-||.+.+.. +..||.|+.++
T Consensus 24 LRC~IC~eyf~i-----p--~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~ 67 (442)
T KOG0287|consen 24 LRCGICFEYFNI-----P--MITPCSHTFCSLCIRKFLSY--KPQCPTCCVTV 67 (442)
T ss_pred HHHhHHHHHhcC-----c--eeccccchHHHHHHHHHhcc--CCCCCceeccc
Confidence 379999999974 2 13469999999999999995 68999999764
No 41
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0025 Score=73.62 Aligned_cols=45 Identities=31% Similarity=0.795 Sum_probs=36.9
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHH-HHhcCCCCC-CCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYK-WFSTSHKSS-CPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~k-Wf~~s~~st-CPlCR~~ 1842 (1843)
+.-.|+||++..+. ..|.+|||.|.-.||.. |=+. +.. ||+||..
T Consensus 214 ~d~kC~lC~e~~~~-------ps~t~CgHlFC~~Cl~~~~t~~--k~~~CplCRak 260 (271)
T COG5574 214 ADYKCFLCLEEPEV-------PSCTPCGHLFCLSCLLISWTKK--KYEFCPLCRAK 260 (271)
T ss_pred cccceeeeecccCC-------cccccccchhhHHHHHHHHHhh--ccccCchhhhh
Confidence 45689999998773 36889999999999999 8774 455 9999973
No 42
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0028 Score=78.75 Aligned_cols=47 Identities=32% Similarity=0.815 Sum_probs=35.8
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcC---CCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS---HKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s---~~stCPlCR~~~ 1843 (1843)
...||||++.-.. |. -+.|||.|...||-+.+.++ +--.||+||..+
T Consensus 186 ~~~CPICL~~~~~-----p~--~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-----PV--RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCc-----cc--ccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 4589999987542 21 13599999999999999976 234899999753
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.98 E-value=0.0019 Score=82.23 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=37.6
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.||||+..+...-...| .+|+|.||.+||..|-+. -.|||+||..|
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~----k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF 170 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESE----KHTAHYFCEECVGSWSRC--AQTCPVDRGEF 170 (1134)
T ss_pred hhhhhHHHHHHHHHhhccc----cccccccHHHHhhhhhhh--cccCchhhhhh
Confidence 4579999998764322222 379999999999999996 47999999875
No 44
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.88 E-value=0.0059 Score=66.13 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=38.9
Q ss_pred ccCCCcccccccccccccCcccccccccccCC---ccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKH---KFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h---~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
......+|=||++.-. + .. ..|. |+. .-|..||.+|+..+++.+||+|+.++
T Consensus 4 ~s~~~~~CRIC~~~~~--~--~~-~PC~-CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 4 VSLMDKCCWICKDEYD--V--VT-NYCN-CKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred cCCCCCeeEecCCCCC--C--cc-CCcc-cCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3445668999988732 1 11 2453 666 66999999999999999999999864
No 45
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.80 E-value=0.0036 Score=81.03 Aligned_cols=50 Identities=44% Similarity=0.929 Sum_probs=41.7
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCC-----CCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKS-----SCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~s-----tCPlCR~ 1841 (1843)
+.-||.|||+.|... -|...|.+|.|.||-.||.+|-+++.+. .||.|++
T Consensus 190 ~~yeCmIC~e~I~~t---~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRT---APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeecccc---CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 345999999998754 4778999999999999999999975333 6999985
No 46
>PHA02862 5L protein; Provisional
Probab=95.72 E-value=0.006 Score=64.82 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=36.7
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+.|=||++.-+. ..-| =+|.---+.-|..||.+|++.|++.+||+|+.++
T Consensus 3 diCWIC~~~~~e--~~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDE--RNNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCC--Cccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 579999997432 1111 1233336788999999999999999999999864
No 47
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.45 E-value=0.0074 Score=52.46 Aligned_cols=41 Identities=37% Similarity=0.797 Sum_probs=22.8
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcC--CCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--HKSSCP 1837 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--~~stCP 1837 (1843)
||||.+ +.. +...|.+ .+|||.|-..||.++.+++ +.-+||
T Consensus 1 CpIc~e-~~~-~~n~P~~--L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-EENPPMV--LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T-TSS-EEE---SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC-CCCCCEE--EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 753 3444543 4699999999999999965 345787
No 48
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=95.43 E-value=0.0082 Score=57.69 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=32.2
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
-||||.+.|.. |- ..+|||.|-..||.+|++. +..+||+||.++
T Consensus 6 ~CpIt~~lM~d-----PV--i~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l 49 (73)
T PF04564_consen 6 LCPITGELMRD-----PV--ILPSGHTYERSAIERWLEQ-NGGTDPFTRQPL 49 (73)
T ss_dssp B-TTTSSB-SS-----EE--EETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-
T ss_pred CCcCcCcHhhC-----ce--eCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcC
Confidence 69999999973 22 2368899999999999997 468999998763
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.88 E-value=1.9 Score=55.98 Aligned_cols=266 Identities=17% Similarity=0.218 Sum_probs=172.0
Q ss_pred CHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccC-cCcc-cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh-ch
Q 043255 5 DSEVAQHLKRLARKDPITKLKALSSLSALLKEKS-GKDI-APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV-GR 81 (1843)
Q Consensus 5 D~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~-~~~l-~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~-gK 81 (1843)
+....-.+++|+.+ -.+..+|.++...+...+ .+.+ ..+ +|.-|...+.-.| +.+-.++..+++.. +.
T Consensus 2 ~~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~------lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~ 72 (503)
T PF10508_consen 2 EEWINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPV------LFDCLNTSNREQV-ELICDILKRLLSALSPD 72 (503)
T ss_pred chHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHH------HHHHHhhcChHHH-HHHHHHHHHHHhccCHH
Confidence 44566778888888 457788999887776554 2333 222 7777775522222 34444444444322 12
Q ss_pred hhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHH
Q 043255 82 DLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEE 161 (1843)
Q Consensus 82 ~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~Ea 161 (1843)
.+ ++++++.-..|..-+++.|-+.|...+..+-..++ ..+-.....+++..+...|..+-
T Consensus 73 ~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~~l~~~i~~~L~~~d--------------- 132 (503)
T PF10508_consen 73 SL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDNELLPLIIQCLRDPD--------------- 132 (503)
T ss_pred HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCccHHHHHHHHHcCCc---------------
Confidence 22 67788888888888999999999998887765432 23334556777777776663111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhcc--chhHHhhhccCChhHHHHHHH
Q 043255 162 MHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSD--HKYFLDFLKSQSVSIRSATYS 239 (1843)
Q Consensus 162 KY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~--~k~fW~~~k~~~p~VR~A~y~ 239 (1843)
..|-..+..+|..+...- . ..+.+|.. ...+.+..+..++.||-.+|+
T Consensus 133 --~~Va~~A~~~L~~l~~~~----------~------------------~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 133 --LSVAKAAIKALKKLASHP----------E------------------GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred --HHHHHHHHHHHHHHhCCc----------h------------------hHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 134445555555554221 0 11122221 123777788878999999999
Q ss_pred HHHHHHhcCCcccccchhhH--HHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCC
Q 043255 240 VLKSYIKNIPHVFNEGNLKI--IATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFG 317 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~--i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~G 317 (1843)
++..+.+.-++.+.. ... +-+.+++.++++|.-+.....+.+-.+.+ .|...... .+..++++|...|......
T Consensus 183 l~v~i~~~S~~~~~~--~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL-~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 183 LLVEIASHSPEAAEA--VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYL-EQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHHHHhcCHHHHHH--HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHH-HhCCHHHHHHHHHhccccC
Confidence 999999887765421 221 55677788999999999999999999988 56655443 3567999999999877555
Q ss_pred C--CccchhhHHHHhhhC
Q 043255 318 S--QQVSYPALVLFLDVV 333 (1843)
Q Consensus 318 s--a~~~yp~LlplLs~i 333 (1843)
. ...+-|..+.|...+
T Consensus 259 p~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 259 PRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred CcccchhhhhHHHHHHHH
Confidence 4 444458887776655
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.90 E-value=0.021 Score=68.63 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=40.0
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
-|..|-+-+...+.++ .-.+|.|+||..|++..+...+..+||-||+
T Consensus 367 ~Cg~CGe~~Glk~e~L---qALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 367 YCGLCGESIGLKNERL---QALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhcCCcccc---cccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 6999999998777665 3448999999999999998766779999994
No 51
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.84 E-value=0.027 Score=49.88 Aligned_cols=44 Identities=32% Similarity=0.839 Sum_probs=29.5
Q ss_pred cccccccccccCcccccccccccCC---ccCHhhHHHHHhcCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKH---KFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h---~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
|-||++.-...+ .+- ..|. |+- ..|..||.+|+..+++.+|++|
T Consensus 1 CrIC~~~~~~~~-~li-~pC~-C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLI-SPCR-CKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE--SSS--SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-cee-cccc-cCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999866432 221 2343 665 8999999999999888899998
No 52
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.61 E-value=0.044 Score=47.71 Aligned_cols=41 Identities=27% Similarity=0.898 Sum_probs=25.4
Q ss_pred cccccccccccCccccccccc--ccCCccCHhhHHHHHhcCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
|.+|.+++-.+ .+|. .|+-.+|..|+.++|++..+.+||.|
T Consensus 1 C~~C~~iv~~G------~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG------QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS------EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee------ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 78899888753 5788 59999999999999998655589988
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.024 Score=50.98 Aligned_cols=45 Identities=31% Similarity=0.790 Sum_probs=30.3
Q ss_pred cccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+||.|||+. +.|. ..-+|||. ...+|=.+-.+. .+.+||+||.|+
T Consensus 8 dECTICye~--pvds-----VlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEH--PVDS-----VLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccC--cchH-----HHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence 799999985 2332 23479994 566675444443 457999999874
No 54
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.051 Score=66.39 Aligned_cols=55 Identities=31% Similarity=0.703 Sum_probs=38.6
Q ss_pred CCCcccccccccccccCcccc-cccccccCCccCHhhHHHHHhcCC-----CCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLP-RLACKTCKHKFHSACLYKWFSTSH-----KSSCPLCQSP 1842 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP-~~~C~~C~h~FH~~CL~kWf~~s~-----~stCPlCR~~ 1842 (1843)
....+|.||++.+...-..+- ...-+.|.|.|...||.+|=...+ ...||.||-+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 346689999999875331110 112246999999999999986433 3689999974
No 55
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=4.6 Score=55.60 Aligned_cols=294 Identities=17% Similarity=0.143 Sum_probs=178.8
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh------chhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV------GRDL 83 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~------gK~l 83 (1843)
..|.-..--|+.+|.-||-=|..+..-. +....+.++...++|.+-..|+++.||-++-++.+.++.-. .+++
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~-~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETF-GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhh-ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4555566678889999988887765543 45567788889999999999999999999999999998655 3566
Q ss_pred hhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhc--------------------
Q 043255 84 APHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLK-------------------- 143 (1843)
Q Consensus 84 ap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk-------------------- 143 (1843)
+.-||+++-.-=.-..|.|..+|..+.++|...--+.- ..+.-...+|+.+.-...+
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p---k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP---KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 66666666666666777888889999999875543321 1222222233322221110
Q ss_pred --------c----------------CccccCCC-C---CChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccc
Q 043255 144 --------L----------------TPQNLSDK-A---IALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENIT 195 (1843)
Q Consensus 144 --------~----------------Tp~TLSDk-s---~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~ 195 (1843)
. |+.+.-|+ + ...||. |+---..+..++.++-..+++.+.
T Consensus 278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~---~~~~~~~A~~~lDrlA~~L~g~~v--------- 345 (1075)
T KOG2171|consen 278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD---EETPYRAAEQALDRLALHLGGKQV--------- 345 (1075)
T ss_pred HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc---ccCcHHHHHHHHHHHHhcCChhhe---------
Confidence 0 10000011 0 000000 111111222222222222211110
Q ss_pred cCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcc
Q 043255 196 AEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVC 275 (1843)
Q Consensus 196 ~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~ 275 (1843)
.-.+|. .+=.++.|.+..-|.|..-.|..+-+..++.+. +++.+|-+.|++.|.|+.|-|
T Consensus 346 ----------------~p~~~~---~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~-~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 346 ----------------LPPLFE---ALEAMLQSTEWKERHAALLALSVIAEGCSDVMI-GNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred ----------------hHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHhhcCCCCHHH
Confidence 112333 255678899999999999999999999888775 578999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCC-CCCccchhhHHHHhhhCCcCcCCC
Q 043255 276 HSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCF-GSQQVSYPALVLFLDVVPPKAVAA 340 (1843)
Q Consensus 276 ~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~-Gsa~~~yp~LlplLs~iP~~vl~~ 340 (1843)
..+.-.|+=.++..++.--.. ..+..+.|-|...+-.-+. .-...---.++.|....|.+++.+
T Consensus 406 r~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQK-KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999988888776543310 0012233344444432211 011112356777778887777653
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.46 E-value=0.62 Score=47.53 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHH
Q 043255 25 KALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSE 104 (1843)
Q Consensus 25 KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~ 104 (1843)
-+|--|.+..-.. +..+...++.-...-=+...|.|.|||..|-+.+..+++..+..+.||+..++.+-+-...|++..
T Consensus 5 ggli~Laa~ai~l-~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 5 GGLIGLAAVAIAL-GKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHc-hHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 3444554433222 222444444444444467779999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 043255 105 VSQAAK 110 (1843)
Q Consensus 105 VA~aA~ 110 (1843)
|..+|.
T Consensus 84 Vr~~a~ 89 (97)
T PF12755_consen 84 VRSAAE 89 (97)
T ss_pred HHHHHH
Confidence 999884
No 57
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.27 E-value=3.9 Score=55.10 Aligned_cols=211 Identities=16% Similarity=0.209 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcc--
Q 043255 21 ITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQ-- 98 (1843)
Q Consensus 21 tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~-- 98 (1843)
+-|.||.--|..+....+.+..+.+. .++-..|+.-.....=+..-++++.+...+|+|+..|+..++|.-.-=.
T Consensus 189 aVrKkai~~l~~la~~~~~~ly~~li---~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~ 265 (1233)
T KOG1824|consen 189 AVRKKAITALGHLASSCNRDLYVELI---EHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNK 265 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcc
Confidence 44566666666554443333323333 3555566664444444455678899999999999999999999754333
Q ss_pred -cCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccC-CC---CCChhhHHHHHHHHHHHHHHH
Q 043255 99 -FDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLS-DK---AIALDELEEMHQQVISSSLLA 173 (1843)
Q Consensus 99 -~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLS-Dk---s~~~EE~EaKY~RVvssSL~a 173 (1843)
--.|.+.-....++|+.+ +..|+.+|.-|.-+.+..+-+-++ |. +.++||-.+..
T Consensus 266 ~e~~dDELrE~~lQale~f----------l~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~---------- 325 (1233)
T KOG1824|consen 266 IEEDDDELREYCLQALESF----------LRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF---------- 325 (1233)
T ss_pred cccCcHHHHHHHHHHHHHH----------HHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh----------
Confidence 223444445555555432 345555555555554444334444 32 22223322210
Q ss_pred HHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccc
Q 043255 174 LATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFN 253 (1843)
Q Consensus 174 L~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~ 253 (1843)
++ +.|+.+.++. | =++.+.=| .||||.-.++.+++..+++++.
T Consensus 326 ----~e----------d~eDde~~de------------Y---sDDeD~SW--------kVRRaAaKcl~a~IsSR~E~L~ 368 (1233)
T KOG1824|consen 326 ----LE----------DEEDDEQDDE------------Y---SDDEDMSW--------KVRRAAAKCLEAVISSRLEMLP 368 (1233)
T ss_pred ----hh----------ccccchhccc------------c---ccccchhH--------HHHHHHHHHHHHHHhccHHHHH
Confidence 10 0111110010 1 11233446 4899999999999999988775
Q ss_pred cchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCC
Q 043255 254 EGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPD 292 (1843)
Q Consensus 254 ~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd 292 (1843)
. -.+.++|++++.|+|.+-.|..+...+.+.+.+..|-
T Consensus 369 ~-~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 369 D-FYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred H-HHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 3 4577999999999999999999999998888777654
No 58
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.05 Score=71.09 Aligned_cols=49 Identities=22% Similarity=0.724 Sum_probs=38.9
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+.+.-.||.|-.-. .| .....|+|.|+..|+.+=+.+ ++..||-|..+|
T Consensus 640 yK~~LkCs~Cn~R~--Kd-----~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aF 688 (698)
T KOG0978|consen 640 YKELLKCSVCNTRW--KD-----AVITKCGHVFCEECVQTRYET-RQRKCPKCNAAF 688 (698)
T ss_pred HHhceeCCCccCch--hh-----HHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCC
Confidence 44556899998433 33 344579999999999999997 678999999887
No 59
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.91 E-value=12 Score=48.25 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=76.6
Q ss_pred hhc-cCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCC-CCcchHHHHHHHHHHHhcCCCceeecCcchh
Q 043255 225 FLK-SQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEK-DPVCHSSMWDAILLLSKRFPDCWTVLNAQKT 302 (1843)
Q Consensus 225 ~~k-~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~-d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~ 302 (1843)
+++ .+++.||+...+++..++.. .|.+.+.+.++..+.+. |+.....+-.++..+..++|... +.
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~------~~ 377 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA------EW 377 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH------HH
T ss_pred eecCCCChhHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH------HH
Confidence 444 78889999999998888864 45677888888777444 77788899999999988886543 44
Q ss_pred hhHHHHHHHHccCCCCCccchhhHHHHhhhCCcC
Q 043255 303 ILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPK 336 (1843)
Q Consensus 303 ~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~ 336 (1843)
.+.-+.++++.++..-...++..+.-++..-|..
T Consensus 378 ~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 378 YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 8899999999888888888899999998887654
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.63 E-value=0.14 Score=45.59 Aligned_cols=47 Identities=21% Similarity=0.776 Sum_probs=25.8
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
||+|.+.+...+..+ ..| .|+.++-..|..+=.+. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~--~PC-~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDF--YPC-ECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT----SS-TTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCcc--ccC-cCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 899999997766554 457 69999999998887764 357999999874
No 61
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=91.50 E-value=0.055 Score=50.74 Aligned_cols=41 Identities=34% Similarity=1.062 Sum_probs=22.0
Q ss_pred cccccccccccccCcccccccc-cccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLAC-KTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C-~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
-.|++|.++++.. .| ..|.|.|.+.|+..=+. +.||+|+.|
T Consensus 8 LrCs~C~~~l~~p-------v~l~~CeH~fCs~Ci~~~~~----~~CPvC~~P 49 (65)
T PF14835_consen 8 LRCSICFDILKEP-------VCLGGCEHIFCSSCIRDCIG----SECPVCHTP 49 (65)
T ss_dssp TS-SSS-S--SS--------B---SSS--B-TTTGGGGTT----TB-SSS--B
T ss_pred cCCcHHHHHhcCC-------ceeccCccHHHHHHhHHhcC----CCCCCcCCh
Confidence 4799999998742 23 47999999999987444 469999976
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=91.35 E-value=0.08 Score=48.86 Aligned_cols=42 Identities=24% Similarity=0.695 Sum_probs=29.5
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL 1838 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl 1838 (1843)
-.|||....|.. | ++...|+|.|-...|.+|++..+...||.
T Consensus 12 ~~CPiT~~~~~~-----P-V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFED-----P-VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SS-----E-EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhC-----C-cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 479999999873 2 45568999999999999997666678998
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.05 E-value=35 Score=46.71 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=156.0
Q ss_pred HHHHHHhhhcCChhhHHHHH-HHHHHHHhcc---CcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhh
Q 043255 8 VAQHLKRLARKDPITKLKAL-SSLSALLKEK---SGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDL 83 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KAL-qeL~~lv~~~---~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~l 83 (1843)
+...+|.|++++..+-.+-+ |-|.+.+.+. -+.-+..+.|. .--|+.....++-..||..-|+++.++-++.|.+
T Consensus 214 i~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~-v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 214 IEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPL-VADYCNKIEEDDDELREYCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHH-HHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh
Confidence 45788999999655333332 2233333222 12223434443 4457766677888999999999999999999999
Q ss_pred hhhhhhhhhhHhhc-ccCCc-------HHHHHHHHHHH----HhhCCCh----hhHHHHHHHHHHHHH----HHHHHHhc
Q 043255 84 APHLKSLMGPWWFS-QFDSN-------SEVSQAAKRSL----QAAFPAQ----EKRLDALLICATEVF----IYLEENLK 143 (1843)
Q Consensus 84 ap~Lk~l~g~Wl~~-~~D~~-------~~VA~aA~~sf----~~~Fp~~----eKr~~a~~~cq~eIl----~~~~d~Lk 143 (1843)
.||.|.+++--+-- .|||. .+-+.-+-+.= .+-...+ .|...+=..|-.... +++-+..
T Consensus 293 ~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~- 371 (1233)
T KOG1824|consen 293 LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFY- 371 (1233)
T ss_pred cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHH-
Confidence 99999999986643 24431 11111111100 0111111 122222223322222 1122222
Q ss_pred cCccccCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhH
Q 043255 144 LTPQNLSDKA-IALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYF 222 (1843)
Q Consensus 144 ~Tp~TLSDks-~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~f 222 (1843)
++++-.- ..=-|+| +-|-+-.+.++-.++.+.+.......+.|..+...- -+ .++ +++.--.+. -|..
T Consensus 372 ---q~l~p~lI~RfkERE---EnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~-~s-~~~-~L~~~~~~i--Vkai 440 (1233)
T KOG1824|consen 372 ---QTLGPALISRFKERE---ENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGT-PS-DLS-MLSDQVPLI--VKAI 440 (1233)
T ss_pred ---HHhCHHHHHHHHHHh---hhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCC-cc-chH-HHHhhhHHH--HHHH
Confidence 1111110 0012333 245555566666666665433222211111111000 00 011 111100111 0123
Q ss_pred HhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchh
Q 043255 223 LDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKT 302 (1843)
Q Consensus 223 W~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~ 302 (1843)
-+.++.++-.-|...|.+|++++...|+.+. +++..+.|.+.-+|.|+.+. .|.|+.
T Consensus 441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~-~~~~slvpgI~~~l~DkSss----------------------s~~ki~ 497 (1233)
T KOG1824|consen 441 QKQLREKSVKTRQGCFLLLTELINVLPGALA-QHIPSLVPGIIYSLNDKSSS----------------------SNLKID 497 (1233)
T ss_pred HHHHhhccccchhhHHHHHHHHHHhCcchhh-hcccccchhhhhhcCCccch----------------------HHHHHH
Confidence 3445666777899999999999999999875 46777777777666665433 455666
Q ss_pred hhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHH
Q 043255 303 ILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLW 352 (1843)
Q Consensus 303 ~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~ 352 (1843)
.+.++...|-. .+|+.|.|++-++...+-..| .+.||+==-+|+.
T Consensus 498 ~L~fl~~~L~s---~~p~~fhp~~~~Ls~~v~~aV--~d~fyKisaEAL~ 542 (1233)
T KOG1824|consen 498 ALVFLYSALIS---HPPEVFHPHLSALSPPVVAAV--GDPFYKISAEALL 542 (1233)
T ss_pred HHHHHHHHHhc---CChhhcccchhhhhhHHHHHh--cCchHhhhHHHHH
Confidence 77777766653 246677777666555444333 2224544444444
No 64
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=0.13 Score=62.19 Aligned_cols=47 Identities=30% Similarity=0.742 Sum_probs=33.8
Q ss_pred CCCcccccccccccccCcccccccccccCC-ccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKH-KFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h-~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+.-.||.||++.-. | ..-.+|+| ...+.|-.. |+- ..+.||+||+++
T Consensus 288 ~~gkeCVIClse~r--d-----t~vLPCRHLCLCs~Ca~~-Lr~-q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESR--D-----TVVLPCRHLCLCSGCAKS-LRY-QTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCc--c-----eEEecchhhehhHhHHHH-HHH-hhcCCCccccch
Confidence 33569999999864 2 24458999 678889654 332 357999999975
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=90.32 E-value=0.13 Score=63.89 Aligned_cols=55 Identities=25% Similarity=0.678 Sum_probs=41.7
Q ss_pred HhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhc---CCCCCCCCCCCC
Q 043255 1781 RNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST---SHKSSCPLCQSP 1842 (1843)
Q Consensus 1781 ~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~---s~~stCPlCR~~ 1842 (1843)
.|+....++..+|.+|-+.-. | ..-..|.|+|...||..+... +++-|||.|--+
T Consensus 527 ~n~~~enk~~~~C~lc~d~ae--d-----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 527 ANLPDENKGEVECGLCHDPAE--D-----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred cCCCccccCceeecccCChhh--h-----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 466777788889999988743 2 123469999999999888773 345699999754
No 66
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=33 Score=46.28 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=92.2
Q ss_pred hHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcC-CC-ceeecC
Q 043255 221 YFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRF-PD-CWTVLN 298 (1843)
Q Consensus 221 ~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~-Pd-~W~~~n 298 (1843)
..-.-+++.|+.|||.+++|+..+++ ++|++.+.+-++..|...|+-.-.++-..+..+..+| |+ .|
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn-------~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W---- 422 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVN-------ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW---- 422 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh----
Confidence 34556789999999999999998874 4678899999999998888888888888888888876 65 77
Q ss_pred cchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHh
Q 043255 299 AQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWA 353 (1843)
Q Consensus 299 ~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~ 353 (1843)
.+.-+.++++.||.=-....|++++.+|+.=|.+. .+....++..++..
T Consensus 423 ----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~--~~y~~~rLy~a~~~ 471 (866)
T KOG1062|consen 423 ----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQEL--HEYAVLRLYLALSE 471 (866)
T ss_pred ----HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcch--hhHHHHHHHHHHhh
Confidence 56677888998888888889999999999886663 33455566655544
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=0.8 Score=56.43 Aligned_cols=46 Identities=24% Similarity=0.574 Sum_probs=33.3
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcC------CCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS------HKSSCPLCQ 1840 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s------~~stCPlCR 1840 (1843)
-+|-|||+...... . +.-.+|+|.|...|+..+|... +.-.||-|.
T Consensus 185 f~C~ICf~e~~G~~-c---~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQMGQH-C---FKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhcCcc-e---eeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 48999999977422 1 2234899999999999999943 233787654
No 68
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.61 E-value=0.13 Score=62.18 Aligned_cols=155 Identities=15% Similarity=0.393 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhchhhhhHHHHHHHhHHhcCHHHHHHHHH-HHHhccCCCCceEEEEec-cccEEEEEEEec
Q 043255 1643 AIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELS-QIKKANIADENFSLTVSK-SANEVVATYTKD 1720 (1843)
Q Consensus 1643 ~ly~~~l~~lP~~vr~W~~~~~~r~~~~~ve~~t~~~~Sp~li~~el~-~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~id 1720 (1843)
-+|.+.++-.+.+.|+|-.=- +.+. -|+. .|--+|++ .+|+-..+..+...+.+- .-..-...|.--
T Consensus 233 DvFTRLFqPw~tllkNWq~La----vtHP------GYmA-FLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~ 301 (563)
T KOG1785|consen 233 DVFTRLFQPWKTLLKNWQTLA----VTHP------GYMA-FLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTA 301 (563)
T ss_pred hhHHHhhccHHHHHHhhhhhh----ccCC------ceeE-EeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcC
Confidence 456666777788888884321 0000 0111 11223332 122211234455666552 234556678766
Q ss_pred CCceEEEEecCCCCCCCcceEeecc--------------------------ccccCHHHHHHHHHHHHHHHHhccccHHH
Q 043255 1721 ETKMDLIIRLPASYPLRPVDVECMR--------------------------SLGISEVKQRKWLMSMMLFVRNQNGALAE 1774 (1843)
Q Consensus 1721 e~~~el~I~lP~~YPL~~v~V~~~~--------------------------~vgvse~k~r~Wll~~~~~i~~qnGsi~d 1774 (1843)
|.. |--+||.|-||-.+-+++-+ ++.|++.+..- +.. =|+
T Consensus 302 dG~--IlQTIP~NKpL~QaL~eG~keGFYlyPdGr~~npdLt~l~~~~p~d~i~VtqEQyeL-------Yce--Mgs--- 367 (563)
T KOG1785|consen 302 DGN--ILQTIPQNKPLFQALLEGHKEGFYLYPDGRDQNPDLTGLCQPPPQDRIKVTQEQYEL-------YCE--MGS--- 367 (563)
T ss_pred CCc--eeeccCCCcHHHHHHHhccccceEECCCCccCCCChhhccCCCcccceeeeHHHHHH-------HHH--ccc---
Confidence 654 44568999999877666532 33333332220 000 011
Q ss_pred HHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1775 AIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1775 ~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+-|-||-+. |+ +++.-+|||.....||..|=.++...+||.||..+
T Consensus 368 --------------TFeLCKICaen----dK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 368 --------------TFELCKICAEN----DK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred --------------hHHHHHHhhcc----CC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 13469999774 22 24567899999999999998877678999999753
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=10 Score=52.36 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=117.8
Q ss_pred cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhh
Q 043255 43 APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEK 122 (1843)
Q Consensus 43 ~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eK 122 (1843)
+.++|.--...+++.-..+.+=|.++-.+.+.++..+.|.|.++|+++|+.-+-|..||++-|.-||.+++-.. .+ +=
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~-st-dl 420 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQM-ST-DL 420 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh-hh-hh
Confidence 44677777888899999999999999999999999999999999999999999999999999999999998643 22 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhh
Q 043255 123 RLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHAS 202 (1843)
Q Consensus 123 r~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~s 202 (1843)
+.++=++|++.+...+...+- ++ ...||-..+-.++-.+.+..+.+.+
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld-~~---------------~~~rV~ahAa~al~nf~E~~~~~~l---------------- 468 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLD-ST---------------QNVRVQAHAAAALVNFSEECDKSIL---------------- 468 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhc-cc---------------CchHHHHHHHHHHHHHHHhCcHHHH----------------
Confidence 345667888888766654441 11 1247877777777766654321110
Q ss_pred hHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC
Q 043255 203 KARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 203 k~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~ 248 (1843)
.+-+..++. |.|.-+..+..|.||..+-..|++.-...
T Consensus 469 ------~pYLd~lm~--~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 469 ------EPYLDGLME--KKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred ------HHHHHHHHH--HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 001223443 34555666667777777777776666554
No 70
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=88.79 E-value=0.13 Score=58.09 Aligned_cols=45 Identities=20% Similarity=0.837 Sum_probs=38.8
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.-.|-+|.+.+-.+ .+|.+|+-.+|..|+.+.|++ .+.||.|..-
T Consensus 181 lk~Cn~Ch~LvIqg------~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG------IRCGSCNIQYHRGCIQTYLQR--RDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhhee------eccCcccchhhhHHHHHHhcc--cCcCCchhcc
Confidence 34899999988743 689999999999999999997 6899999643
No 71
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=0.24 Score=61.87 Aligned_cols=45 Identities=31% Similarity=0.786 Sum_probs=34.9
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-+|.||+..+.. |.. .+|||.|...||.+ ....++.||+||.++
T Consensus 84 ef~c~vc~~~l~~-----pv~--tpcghs~c~~Cl~r--~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 84 EFECCVCSRALYP-----PVV--TPCGHSFCLECLDR--SLDQETECPLCRDEL 128 (398)
T ss_pred hhhhhhhHhhcCC-----Ccc--ccccccccHHHHHH--HhccCCCCccccccc
Confidence 3489999988874 222 27999999999999 333578999999864
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.66 E-value=0.53 Score=42.25 Aligned_cols=54 Identities=26% Similarity=0.184 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHh
Q 043255 62 REVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQA 115 (1843)
Q Consensus 62 RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~ 115 (1843)
++||+.+-.++|.+....+..+.||++.+++.-...+-|++..|..+|..++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 479999999999988899999999999999999999999999999999888753
No 73
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=88.14 E-value=3.8 Score=41.31 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=35.1
Q ss_pred ceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHh
Q 043255 1723 KMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRN 1767 (1843)
Q Consensus 1723 ~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~ 1767 (1843)
.+.+.|++|++||-.++.|.....-|++....+.....+.....-
T Consensus 42 ~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~l~~~~~e 86 (107)
T smart00591 42 SLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIAEE 86 (107)
T ss_pred EEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999988887665688887777766666665543
No 74
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.11 E-value=7.3 Score=43.66 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcc
Q 043255 19 DPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQ 98 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~ 98 (1843)
|+..|.-|+--+.+++... .++++.|...--+.-.|.+..||..|-.++..|+.. .+.+.=..++..-+...
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 5667888888888888765 235566665555555699999999999999998863 33333344555666677
Q ss_pred cCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHH
Q 043255 99 FDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYL 138 (1843)
Q Consensus 99 ~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~ 138 (1843)
-|+++.|+..|+..|...... +..+.+.-+..+++.++
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~--~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK--RNPNIIYNNFPELISSL 110 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHH
Confidence 999999999999999988742 34566655555555544
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.64 E-value=17 Score=47.55 Aligned_cols=205 Identities=17% Similarity=0.127 Sum_probs=127.0
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLD-YSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD-~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
-.+|.|.+-+...+.+|=-++..++...-.+.++.. +....+ .+...| .+.+.||.+..........+|+..+||+.
T Consensus 138 ~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~-~~l~~l-~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 138 LLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF-GFLDNL-SKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred HHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh-hHHHHH-HHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 455666666666777777777777765433332211 011222 234444 78888998999999999999999999999
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHH---HhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSL---QAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQ 165 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf---~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~R 165 (1843)
.++|.-+...+|....|..+|..+. ..+|+.. .- ..++-.+..++ ++. -=|
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aV--------K~llpsll~~l--------------~~~---kWr 269 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AV--------KLLLPSLLGSL--------------LEA---KWR 269 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hh--------hHhhhhhHHHH--------------HHH---hhh
Confidence 9999999999998877777766554 4566641 11 12222222222 111 236
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHH
Q 043255 166 VISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYI 245 (1843)
Q Consensus 166 VvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll 245 (1843)
--.+|+.+++.+..--+ ++.+--...+++. +. +.+|+. .|.||+|.++.+..+.
T Consensus 270 tK~aslellg~m~~~ap----------------~qLs~~lp~iiP~----ls--evl~DT----~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 270 TKMASLELLGAMADCAP----------------KQLSLCLPDLIPV----LS--EVLWDT----KPEVRKAGIETLLKFG 323 (569)
T ss_pred hHHHHHHHHHHHHHhch----------------HHHHHHHhHhhHH----HH--HHHccC----CHHHHHHHHHHHHHHH
Confidence 66777877775553321 1111112222321 21 235544 7899999999998888
Q ss_pred hcCCcccccchhhHHHHHHHcccCCCC
Q 043255 246 KNIPHVFNEGNLKIIATAILGAFQEKD 272 (1843)
Q Consensus 246 ~~~p~~l~~~~~k~i~~avl~~l~e~d 272 (1843)
... +...+..+.|.++.++.+..
T Consensus 324 svi----dN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 324 SVI----DNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred Hhh----ccHHHHHHHHHHHHHhcCcc
Confidence 764 22235668888888886543
No 76
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=13 Score=48.79 Aligned_cols=261 Identities=15% Similarity=0.205 Sum_probs=148.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHH
Q 043255 55 RLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEV 134 (1843)
Q Consensus 55 rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eI 134 (1843)
..-...+..|||++--++|.++..+-+.+-|||+.++|.-+.-+.|..+.|.+.+.=.+. |-.-|.+|+. -
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs--------Rys~wv~~~~-~ 470 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS--------RYSKWVVQDS-R 470 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh--------hhhhhHhcCC-h
Confidence 344458899999999999999999999999999999999999999999999887665543 2333444432 1
Q ss_pred HHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHh
Q 043255 135 FIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEK 214 (1843)
Q Consensus 135 l~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~ 214 (1843)
=.|+...+..--.++ -+...||-=++.++++.+.+.- +++ .++.++.
T Consensus 471 ~~~f~pvL~~ll~~l----------lD~NK~VQEAAcsAfAtleE~A--------~~e---------------LVp~l~~ 517 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRL----------LDSNKKVQEAACSAFATLEEEA--------GEE---------------LVPYLEY 517 (885)
T ss_pred HhhhHHHHHHHHHHH----------hcccHHHHHHHHHHHHHHHHhc--------cch---------------hHHHHHH
Confidence 112222111000111 1223466677888888777442 111 2334455
Q ss_pred hhccc-hhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccc-hhhHHHHHHH---cccCCCCCcchHHHHHHHHHHHhc
Q 043255 215 LFSDH-KYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEG-NLKIIATAIL---GAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 215 lf~~~-k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~-~~k~i~~avl---~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
++..- +.|-|| +||.-- -.|..++|+-....+.++.. .++.+-|-++ .-+.+.|.- .-++.+++-.+.+.
T Consensus 518 IL~~l~~af~kY-Q~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~A 592 (885)
T KOG2023|consen 518 ILDQLVFAFGKY-QKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD-LFPLLECLSSIASA 592 (885)
T ss_pred HHHHHHHHHHHH-hhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch-HHHHHHHHHHHHHH
Confidence 55421 223333 333333 37888888888765555433 2555556555 446666654 34566777766665
Q ss_pred CCCceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCC-cCcCC--ChH---HHHHHHHHHHhhhcCCCCCcc
Q 043255 290 FPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVP-PKAVA--ADK---FFQDFFNSLWAGRNEPHSSNS 363 (1843)
Q Consensus 290 ~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP-~~vl~--~~~---f~~~ff~al~~Gl~~r~~s~s 363 (1843)
-.+.+-.+. ..++.|-...|++- ++.+.+.- +.... ..+ -.-+++..+-+|+-+-.++-.
T Consensus 593 L~~gF~P~~--~~Vy~Rc~~il~~t------------~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lv 658 (885)
T KOG2023|consen 593 LGVGFLPYA--QPVYQRCFRILQKT------------LQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLV 658 (885)
T ss_pred HhccccccC--HHHHHHHHHHHHHH------------HHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHh
Confidence 433332211 23778888877753 22333332 22222 222 346777778887765332211
Q ss_pred hHHHHHHHHHHHH
Q 043255 364 DHKAFFRAFKECF 376 (1843)
Q Consensus 364 ~~~a~~say~Ec~ 376 (1843)
..+-+..-..+|+
T Consensus 659 a~snl~~lll~C~ 671 (885)
T KOG2023|consen 659 AQSNLLDLLLQCL 671 (885)
T ss_pred hhccHHHHHHHHh
Confidence 1222444455554
No 77
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=87.24 E-value=0.37 Score=62.38 Aligned_cols=68 Identities=26% Similarity=0.597 Sum_probs=40.2
Q ss_pred HHHhccccHHHHHHHHHHhcccccCCCc-------ccccccccccccCccccc-----ccccccCCccCHhhHHHHHhcC
Q 043255 1764 FVRNQNGALAEAIRIWKRNFDKEFEGVE-------ECPICYSVIHTANHSLPR-----LACKTCKHKFHSACLYKWFSTS 1831 (1843)
Q Consensus 1764 ~i~~qnGsi~d~l~~~k~nv~~~~~g~e-------eCaICys~~~~~d~~lP~-----~~C~~C~h~FH~~CL~kWf~~s 1831 (1843)
++..++|.+..-|....+-..++..+.. .|.|| ...+.-.|- .+|.+|++.||..|+.+
T Consensus 478 L~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfiCe~C----q~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----- 548 (580)
T KOG1829|consen 478 LQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFICELC----QHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----- 548 (580)
T ss_pred HHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeeeeeec----cCCCcccccccccceeHHHHHHHHHHHHHhc-----
Confidence 3444566554444444443333333322 57778 212333355 78999999999999865
Q ss_pred CCCCCCCCC
Q 043255 1832 HKSSCPLCQ 1840 (1843)
Q Consensus 1832 ~~stCPlCR 1840 (1843)
.+.-||-|-
T Consensus 549 ~s~~CPrC~ 557 (580)
T KOG1829|consen 549 KSPCCPRCE 557 (580)
T ss_pred cCCCCCchH
Confidence 223499994
No 78
>PTZ00429 beta-adaptin; Provisional
Probab=86.97 E-value=73 Score=43.75 Aligned_cols=121 Identities=10% Similarity=0.077 Sum_probs=80.4
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcch
Q 043255 222 FLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301 (1843)
Q Consensus 222 fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK 301 (1843)
+.+.+++++|.||+++--.+..+.+..|+.+... .+.+.+...+.|++|+|.....-++..+....|+.|.. -+
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~---~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l---~~ 218 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ---DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES---SN 218 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH---HH
Confidence 5677889999999999999999999999876432 23444556789999999999999999998877876532 34
Q ss_pred hhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhh
Q 043255 302 TILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGR 355 (1843)
Q Consensus 302 ~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl 355 (1843)
..+.||..-|..-+.=+ + =.++-+|..-.++ ....+.++++.+..=+
T Consensus 219 ~~~~~Ll~~L~e~~EW~-Q---i~IL~lL~~y~P~---~~~e~~~il~~l~~~L 265 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWG-Q---LYILELLAAQRPS---DKESAETLLTRVLPRM 265 (746)
T ss_pred HHHHHHHHHhhcCChHH-H---HHHHHHHHhcCCC---CcHHHHHHHHHHHHHh
Confidence 45666666664322111 1 2455556554332 2334556666655433
No 79
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.87 E-value=0.34 Score=62.95 Aligned_cols=51 Identities=25% Similarity=0.676 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCcccccccccccC-----CccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCK-----HKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~-----h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+..+.|-||..+=.++| . -|++|| +..|.+||.+|+..|++..|-+|..++
T Consensus 10 ~d~~~CRICr~e~~~d~-p----LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDD-P----LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCC-c----CcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 34478999998755433 2 366666 579999999999999999999998764
No 80
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=1.1 Score=52.76 Aligned_cols=61 Identities=25% Similarity=0.605 Sum_probs=43.0
Q ss_pred HHHHHHhccccc-------CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1776 IRIWKRNFDKEF-------EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1776 l~~~k~nv~~~~-------~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
+..|+..++..- ....+||+|-.. ..+|. .-.+|+|.|...|+.+=+.....-+||.|.++
T Consensus 218 l~sw~~~l~~ap~~sss~~t~~~~C~~Cg~~-----PtiP~-~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 218 LKSWKLDLDRAPKFSSSTGTSDTECPVCGEP-----PTIPH-VIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred HHhhcccccCCCCcccccccCCceeeccCCC-----CCCCe-eeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 667776644321 123589999753 34453 34569999999999998886655799999874
No 81
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.45 E-value=3.5 Score=42.15 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHH
Q 043255 65 RRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEE 140 (1843)
Q Consensus 65 Re~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d 140 (1843)
|-..-..++.+.-..++.+.+|++.|++|-+.++-|+|..|.-.|.+++-...- -..+.+.-+..+|++.+..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k---~~~~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK---VARGEILPYFNEIFDALCK 75 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 566667777888888999999999999999999999999999999999986631 1122233366666666553
No 82
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=86.22 E-value=0.41 Score=60.11 Aligned_cols=47 Identities=34% Similarity=0.825 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
+..-.|+||..++... ... .+|||.|...|+.+|+.. +..||.||.+
T Consensus 19 ~~~l~C~~C~~vl~~p-----~~~-~~cgh~fC~~C~~~~~~~--~~~cp~~~~~ 65 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP-----VQT-TTCGHRFCAGCLLESLSN--HQKCPVCRQE 65 (391)
T ss_pred cccccCccccccccCC-----CCC-CCCCCcccccccchhhcc--CcCCcccccc
Confidence 4445799999999742 222 479999999999999997 5899999875
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.82 E-value=0.22 Score=53.14 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=25.5
Q ss_pred CcccccccccccccCcccccccccccC------CccCHhhHHHHH
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCK------HKFHSACLYKWF 1828 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~------h~FH~~CL~kWf 1828 (1843)
..||+||++.+...++-+ -.||+ |.||..|+.+|=
T Consensus 26 ~~EC~IC~~~I~~~~GvV----~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVV----YVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEE----EEecCCeehHHHHHHHHHHHHHH
Confidence 459999999998622322 22444 789999999993
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.63 E-value=8.7 Score=53.21 Aligned_cols=224 Identities=18% Similarity=0.202 Sum_probs=124.2
Q ss_pred CChhhHHHHHHHHHHHHhccCcCc-ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhh-----hhhhhh
Q 043255 18 KDPITKLKALSSLSALLKEKSGKD-IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAP-----HLKSLM 91 (1843)
Q Consensus 18 KD~tTK~KALqeL~~lv~~~~~~~-l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap-----~Lk~l~ 91 (1843)
|-.-||++||+=|+.+-.-.+.|. ++-+||+.++ |..|++.+||..|-.++..++..+++ +.| |-..|+
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~----l~~Ds~a~Vra~Al~Tlt~~L~~Vr~-~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVH----LLMDSEADVRATALETLTELLALVRD-IPPSDANIFPEYLF 509 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHH----HhcCchHHHHHHHHHHHHHHHhhccC-CCcccchhhHhhhh
Confidence 445699999988877655443333 6889998776 67899999999999999999987753 221 333445
Q ss_pred hhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHH--hcc-CccccCCCCCChhhHH--------
Q 043255 92 GPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEEN--LKL-TPQNLSDKAIALDELE-------- 160 (1843)
Q Consensus 92 g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~--Lk~-Tp~TLSDks~~~EE~E-------- 160 (1843)
|.-=.-..|+.....|+|..+=-..|. |.+ ..++..... +..| +.. .-+|..... ...|+.
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA---~tA---~rFle~~q~-~~~~g~~n~~nset~~~~~-~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLA---KTA---YRFLELTQE-LRQAGMLNDPNSETAPEQN-YNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHH---HHH---HHHHHHHHH-HHhcccccCcccccccccc-cchHHHHHHHHHHH
Confidence 544445678766666666554443332 211 111111111 1111 100 000111100 001111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCC
Q 043255 161 ----------EMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQS 230 (1843)
Q Consensus 161 ----------aKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~ 230 (1843)
-...|.+..++.-|..++.+- . +-+-+++ .+-+|+.-+|
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-----------k-----------------sND~iLs---hLiTfLNDkD 630 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKE-----------K-----------------SNDVILS---HLITFLNDKD 630 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhc-----------c-----------------cccchHH---HHHHHhcCcc
Confidence 122233333333333333211 0 0112333 2667888889
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccc-hhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 231 VSIRSATYSVLKSYIKNIPHVFNEG-NLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 231 p~VR~A~y~LL~tll~~~p~~l~~~-~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
...|.|+|+-|..+.-. +.++ --.-+-|-+.++|.|.++.|.-...+++-.|.+.
T Consensus 631 w~LR~aFfdsI~gvsi~----VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIF----VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred HHHHHHHHhhccceEEE----EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 99999999977654433 2332 1234667777999999999999999988776654
No 85
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.97 E-value=9.2 Score=50.83 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=112.5
Q ss_pred cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcc-cCCcHHHHHHHHHHHHhhCCChh
Q 043255 43 APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQ-FDSNSEVSQAAKRSLQAAFPAQE 121 (1843)
Q Consensus 43 ~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~-~D~~~~VA~aA~~sf~~~Fp~~e 121 (1843)
+.++..+.|++.+ -.+--|-+.+.-.-+.++..+|+++++|++.+.|+-..|+ .=.+.+|..+|-.-.-+.+.+
T Consensus 595 d~iM~lflri~~s---~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-- 669 (859)
T KOG1241|consen 595 DQIMGLFLRIFES---KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-- 669 (859)
T ss_pred HHHHHHHHHHHcC---CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH--
Confidence 6677777777777 4566788999999999999999999999999999999999 667889999887766655543
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-------CccccC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043255 122 KRLDALLICATEVFIYLEENLKL-------TPQNLS---DKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGF 191 (1843)
Q Consensus 122 Kr~~a~~~cq~eIl~~~~d~Lk~-------Tp~TLS---Dks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~ 191 (1843)
..+-+..+-++++.-+..+|.. .|.-|| |-...-+.-=++|-+.|.--|.... ..+.+ .
T Consensus 670 -L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as-------~~~~d---~ 738 (859)
T KOG1241|consen 670 -LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS-------SVQTD---P 738 (859)
T ss_pred -HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hccCC---C
Confidence 1122445567777777766631 122232 2222223334455554433332222 11221 1
Q ss_pred cccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 192 ENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 192 e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
. .....++-.+.|.+.+..|.-++.+-| .|.++..-+.+-.-+-+++.+
T Consensus 739 ~-~~~~~dYvd~LRe~~leay~gi~qglk------~~~~~~~~~p~v~~I~sfi~~ 787 (859)
T KOG1241|consen 739 A-DDSMVDYVDELREGILEAYTGIIQGLK------THADVMLVQPYVPHIISFIDR 787 (859)
T ss_pred C-cccHHHHHHHHHHHHHHHHHHHHHHhh------cccchhhhhcchHHHHHHHHH
Confidence 1 112234566788888888877776422 455555444444444444444
No 86
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.85 E-value=0.51 Score=61.15 Aligned_cols=40 Identities=35% Similarity=0.914 Sum_probs=33.5
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL 1838 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl 1838 (1843)
.|+||---++.. ...|.+|+|.-|..|...||++. ..||-
T Consensus 1030 ~C~~C~l~V~gs-----s~~Cg~C~Hv~H~sc~~eWf~~g--d~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGS-----SNFCGTCGHVGHTSCMMEWFRTG--DVCPS 1069 (1081)
T ss_pred eeeeEeeEeecc-----chhhccccccccHHHHHHHHhcC--CcCCC
Confidence 599998888743 25799999999999999999973 58884
No 87
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=84.77 E-value=21 Score=49.00 Aligned_cols=182 Identities=14% Similarity=0.181 Sum_probs=127.5
Q ss_pred HhhhcCChhhHHHHHHHHHHHHhccCcCcc---cchhhhHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 13 KRLARKDPITKLKALSSLSALLKEKSGKDI---APIIPQWAFEYKRLL-LDYSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~~~~~~~l---~~iLp~W~~lY~rLs-iD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
..|.=||--+|.+||+++...+.+...+.. .+.+ ..+-+.. .|.+-.|=..|.++...|..+.|....||.+
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll----~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLL----GILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHH----HHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 566778889999999999999987652222 3333 3333444 4999999999999999999999999888888
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVIS 168 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvs 168 (1843)
.+.+.-+-..=|..+.+--+++.+..+.+. +
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n-------------------------------------------------s 366 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN-------------------------------------------------S 366 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh-------------------------------------------------c
Confidence 777765544444433333333322221111 0
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC
Q 043255 169 SSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 169 sSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~ 248 (1843)
+.|..+ .+..-.++||+.|.+|.-+..++..++...
T Consensus 367 ~~l~~~--------------------------------------------~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 367 TPLSKM--------------------------------------------SEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred ccHHHH--------------------------------------------HHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 001111 111233478899999999999999999887
Q ss_pred C-cccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCC
Q 043255 249 P-HVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFP 291 (1843)
Q Consensus 249 p-~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~P 291 (1843)
+ .......++.+++.++...+|++.-|..+--+++..+.+.+-
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 5 444446788899999999999999999999999999888653
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.53 E-value=0.72 Score=56.95 Aligned_cols=66 Identities=26% Similarity=0.652 Sum_probs=41.9
Q ss_pred HHHHHHHhcccc--------cCCCcccccccccccccCcccccccc----------------c--ccCCccCHhhHHHHH
Q 043255 1775 AIRIWKRNFDKE--------FEGVEECPICYSVIHTANHSLPRLAC----------------K--TCKHKFHSACLYKWF 1828 (1843)
Q Consensus 1775 ~l~~~k~nv~~~--------~~g~eeCaICys~~~~~d~~lP~~~C----------------~--~C~h~FH~~CL~kWf 1828 (1843)
-++.|+.-+... -+..|.|-=|+..-. |-+| .|.| . .|+=...-.|+-|||
T Consensus 248 F~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~--~vkl-~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwF 324 (358)
T PF10272_consen 248 FVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQP--NVKL-VKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWF 324 (358)
T ss_pred HHHHHHHHHHhCCccccCCCccccCCccccccCCC--CcEE-EeccCCcccCCcccccCCCCccccccchHHHHHHHHHh
Confidence 466677655322 234567999998532 3333 1233 3 244456778999999
Q ss_pred hcC-----------CCCCCCCCCCCC
Q 043255 1829 STS-----------HKSSCPLCQSPF 1843 (1843)
Q Consensus 1829 ~~s-----------~~stCPlCR~~~ 1843 (1843)
.+. ++.+||+||++|
T Consensus 325 asrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 325 ASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred hhcCCCCChhhhhcCCCCCCCCcccc
Confidence 953 345999999986
No 89
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=0.49 Score=62.94 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=33.0
Q ss_pred hcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHh
Q 043255 1782 NFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFS 1829 (1843)
Q Consensus 1782 nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~ 1829 (1843)
+.-..++..+.|.+|.-.+... | ..--+|||.||..||.+=..
T Consensus 809 ~ry~v~ep~d~C~~C~~~ll~~----p-F~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 809 QRYRVLEPQDSCDHCGRPLLIK----P-FYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cceEEecCccchHHhcchhhcC----c-ceeeeccchHHHHHHHHHHH
Confidence 3445688999999999888742 2 23448999999999988665
No 90
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=83.54 E-value=0.69 Score=62.83 Aligned_cols=52 Identities=27% Similarity=0.684 Sum_probs=34.9
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC--------CCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--------HKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--------~~stCPlCR~~~ 1843 (1843)
++.+-|.||+.+--.. .|-.+ ..|+|.||-+|-.+-+++- +--.||+|.+++
T Consensus 3484 D~DDmCmICFTE~L~A---AP~Iq-L~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSA---APAIQ-LDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred ccCceEEEEehhhhCC---Cccee-cCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 4556788888764422 12211 2699999999998877732 123899999874
No 91
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=83.45 E-value=1 Score=51.75 Aligned_cols=71 Identities=28% Similarity=0.522 Sum_probs=43.1
Q ss_pred HHHHHhccccHHHHHHHHHHhcccccCC-------Ccccccccc--cccccCcccccccccccCCccCHhhHHHHHhcCC
Q 043255 1762 MLFVRNQNGALAEAIRIWKRNFDKEFEG-------VEECPICYS--VIHTANHSLPRLACKTCKHKFHSACLYKWFSTSH 1832 (1843)
Q Consensus 1762 ~~~i~~qnGsi~d~l~~~k~nv~~~~~g-------~eeCaICys--~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~ 1832 (1843)
.-++...+|.+..-|+..-....++..+ ...|.||-+ ++-+=+. --..+|..|+..||..|..+
T Consensus 117 ~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~------ 189 (202)
T PF13901_consen 117 ADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK------ 189 (202)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC------
Confidence 3444556777666555444443333321 137888874 2322111 12468999999999999963
Q ss_pred CCCCCCCC
Q 043255 1833 KSSCPLCQ 1840 (1843)
Q Consensus 1833 ~stCPlCR 1840 (1843)
..||-|.
T Consensus 190 -~~CpkC~ 196 (202)
T PF13901_consen 190 -KSCPKCA 196 (202)
T ss_pred -CCCCCcH
Confidence 4799995
No 92
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.93 E-value=0.45 Score=48.27 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=26.0
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHH
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLY 1825 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~ 1825 (1843)
+.....|++|...+..+ ...--+|||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~-----~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNS-----VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCc-----eEEEeCCCeEEeccccc
Confidence 45567899999998642 24445899999999975
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.64 E-value=0.81 Score=59.90 Aligned_cols=44 Identities=32% Similarity=0.779 Sum_probs=36.8
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC--CCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL--CQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl--CR~ 1841 (1843)
-.|.+|-.++...+ ..|..|+|.-|..|+++||.. .+.||. |..
T Consensus 780 ~~CtVC~~vi~G~~-----~~c~~C~H~gH~sh~~sw~~~--~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVD-----VWCQVCGHGGHDSHLKSWFFK--ASPCAKSICPH 825 (839)
T ss_pred cCceeecceeeeeE-----eecccccccccHHHHHHHHhc--CCCCccccCCc
Confidence 37999999998643 689999999999999999995 477877 643
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.73 E-value=9.8 Score=43.73 Aligned_cols=101 Identities=24% Similarity=0.230 Sum_probs=71.8
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccC-cCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc---hhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKS-GKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG---RDLAP 85 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~-~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g---K~lap 85 (1843)
..|+++..+-...+..|.+-|..+++..+ ...+ + .........+-++.||+.+-+.+..++...+ ..+.+
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~---~---~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI---L---LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH---H---HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH---H---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 46677777677888999999999998654 2222 1 2334446678999999999999999999888 66665
Q ss_pred --hhhhhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 86 --HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 86 --~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
.++.+++.=..+..|++++|-.+|+++|...
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999744
No 95
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=79.85 E-value=6.5 Score=42.25 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccCCCCceEEEEec--cccEEEEEEEe------cCCceEEEEecCCCCCCCcceEeecc
Q 043255 1685 IANELSQIKKANIADENFSLTVSK--SANEVVATYTK------DETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~--~~~EV~a~Y~i------de~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
|..|++.+++. ....+.+.+.. +..+..+++.. ++....+.|.||++||.+++.|.+..
T Consensus 2 l~~E~~~l~~~--~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t 68 (140)
T PF00179_consen 2 LQKELKELQKN--PPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT 68 (140)
T ss_dssp HHHHHHHHHHS--HTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS
T ss_pred HHHHHHHHhhC--CCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc
Confidence 56788888653 35677777665 57788888876 34567999999999999999998865
No 96
>PTZ00429 beta-adaptin; Provisional
Probab=79.84 E-value=91 Score=42.89 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhch-----hhhhh
Q 043255 12 LKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGR-----DLAPH 86 (1843)
Q Consensus 12 lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK-----~lap~ 86 (1843)
.|-|.-+|+.-|.-||.-|..+- +..+++.-...-.|...|.+.-||..|..+...+-..... ++.+.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir-------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIR-------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 34555678888888887665532 1335555566677888899999999999999998875543 34456
Q ss_pred hhhhhhhHhhcccCCcHHHHHHHHHHHHhhC
Q 043255 87 LKSLMGPWWFSQFDSNSEVSQAAKRSLQAAF 117 (1843)
Q Consensus 87 Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~F 117 (1843)
|..+ ..|+++.|...|..+|..+=
T Consensus 184 L~~L-------L~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 184 LVEL-------LNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHH-------hcCCCccHHHHHHHHHHHHH
Confidence 6654 46999999999999998773
No 97
>PHA03096 p28-like protein; Provisional
Probab=78.89 E-value=1.1 Score=54.01 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=34.5
Q ss_pred cccccccccccccC---cccccccccccCCccCHhhHHHHHhcC-CCCCCCCCCC
Q 043255 1791 EECPICYSVIHTAN---HSLPRLACKTCKHKFHSACLYKWFSTS-HKSSCPLCQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d---~~lP~~~C~~C~h~FH~~CL~kWf~~s-~~stCPlCR~ 1841 (1843)
-+|.||++.+.... ++. -.-+.|+|.|...|+..|-..+ .+.+||-||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~f--gil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYY--GILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccc--cccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 58999999987431 110 1233699999999999998854 2346777764
No 98
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=78.82 E-value=5.8 Score=40.30 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=31.7
Q ss_pred CceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcc
Q 043255 1722 TKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQN 1769 (1843)
Q Consensus 1722 ~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qn 1769 (1843)
..+.+.|++|++||-.++.|......+.......+....+...+.-..
T Consensus 49 ~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (113)
T PF05773_consen 49 PSVTLHFTLPPGYPESPPKISLESPKNSRNEQIEKLNKELEQIAEENR 96 (113)
T ss_dssp EEEEEEEEE-SSTTSS--EEEEEEESSSHCHHHHHHHHHHHHHHHHST
T ss_pred eeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 357899999999998888887665555544566666666666665544
No 99
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=77.52 E-value=3.2 Score=53.91 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=119.1
Q ss_pred Hhchhhhhhhh-------hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhH---------------------HHHHHH
Q 043255 78 TVGRDLAPHLK-------SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKR---------------------LDALLI 129 (1843)
Q Consensus 78 ~~gK~lap~Lk-------~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr---------------------~~a~~~ 129 (1843)
..|.++..+|. ..+.+-+.|..|++..|+..|-+.+...-..=|.. ..+=..
T Consensus 219 ~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~ 298 (501)
T PF13001_consen 219 ERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPR 298 (501)
T ss_pred HHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHH
Confidence 44555555554 36777888889999999999999998665541111 111112
Q ss_pred HHHHHHHHHHHHhc---cCccccC--CCCCChhhHHHHHHHHHHHHHHHH---HHHHHHhhhcccCCCCCcccccCcchh
Q 043255 130 CATEVFIYLEENLK---LTPQNLS--DKAIALDELEEMHQQVISSSLLAL---ATLLDVLVCEHFGRPGFENITAEPKHA 201 (1843)
Q Consensus 130 cq~eIl~~~~d~Lk---~Tp~TLS--Dks~~~EE~EaKY~RVvssSL~aL---~~LL~~l~~~~~~~~~~e~~~~e~~~~ 201 (1843)
.|..||.|+..-.. .+|+.+- ....-.+.. |.|+-..++.-+ .+.+..... ...
T Consensus 299 lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~---~~klk~~~l~F~~~~~~~~~~~~~---------------~~l 360 (501)
T PF13001_consen 299 LQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNT---NSKLKSLALQFIRGSSWIFKHISP---------------QIL 360 (501)
T ss_pred HHHHHHHHHHHhHHHHhCCccHHHHHhccccCCcc---ccccchhcchhhhcchHHhhhcCH---------------HHH
Confidence 35677777665431 2233221 011111100 556666666666 444433211 111
Q ss_pred hhHHHHHhhhhHhhhccchhHHhhhc--------cCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCC
Q 043255 202 SKARAIAVSFSEKLFSDHKYFLDFLK--------SQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDP 273 (1843)
Q Consensus 202 sk~~~~~i~~~e~lf~~~k~fW~~~k--------~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~ 273 (1843)
+.. -..++++ .|+... +.+...|+..|+.|+.+.++.|..+... +. +..-+|.+|.+.++
T Consensus 361 ~~l-------~~~i~~~---g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~-li~~LF~sL~~~~~ 428 (501)
T PF13001_consen 361 KLL-------RPVILSQ---GWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LS-LIEFLFDSLEDESP 428 (501)
T ss_pred HHH-------HHHHHhc---CccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HH-HHHHHHHHhhCcch
Confidence 111 1123442 788883 4688999999999999999999988432 43 66777899998999
Q ss_pred cchHHHHHHHHHHHhcCCCcee
Q 043255 274 VCHSSMWDAILLLSKRFPDCWT 295 (1843)
Q Consensus 274 ~~~~~lWealL~l~k~~Pd~W~ 295 (1843)
.+..++=+|+..++..|++...
T Consensus 429 evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 429 EVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999888765
No 100
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.81 E-value=22 Score=39.55 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec--cccEEEEEEE--ec----CCceEEEEecCCCCCCCcceEeecccc---cc--
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK--SANEVVATYT--KD----ETKMDLIIRLPASYPLRPVDVECMRSL---GI-- 1749 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~--~~~EV~a~Y~--id----e~~~el~I~lP~~YPL~~v~V~~~~~v---gv-- 1749 (1843)
.-|.+|++.+++.. ...+++.... +-.+-.++++ -| .....+.|.||++||+.+++|.+..++ .|
T Consensus 8 ~RL~kE~~~l~~~~--~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 8 KRLLKELKKLQKDP--PPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHhcCC--CCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 45677888777531 2344444322 2233444444 22 345799999999999999999886544 12
Q ss_pred --------CHHHH------HHHHHHHHHHHHhcccc---HHHHHHHHHHhcc
Q 043255 1750 --------SEVKQ------RKWLMSMMLFVRNQNGA---LAEAIRIWKRNFD 1784 (1843)
Q Consensus 1750 --------se~k~------r~Wll~~~~~i~~qnGs---i~d~l~~~k~nv~ 1784 (1843)
-.++| ++-+++++.++...|.+ -.||-.+|++|-.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~ 137 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKE 137 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHH
Confidence 22344 46677888888777654 4777788877643
No 101
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.39 E-value=88 Score=39.90 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=125.2
Q ss_pred ChhhHHHHHHHHHHHHhccC-cCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhc
Q 043255 19 DPITKLKALSSLSALLKEKS-GKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFS 97 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~-~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~ 97 (1843)
|+.+|.-|++-|..++.+.+ ++.++.++....... ....+..-|..+..++.-+.+..--|-.|.-..++.-.+ +
T Consensus 203 ~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~-~ 278 (415)
T PF12460_consen 203 DEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL-E 278 (415)
T ss_pred ChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-H
Confidence 57899999999999988753 344566665544433 455666667777777766666554333444333333322 2
Q ss_pred ccCCcHHHHHHHHHHHHhhCCC-h---hhH--HHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHH
Q 043255 98 QFDSNSEVSQAAKRSLQAAFPA-Q---EKR--LDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSL 171 (1843)
Q Consensus 98 ~~D~~~~VA~aA~~sf~~~Fp~-~---eKr--~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL 171 (1843)
..|. +.++..|-++|.-.+.. + .|. ..+-..|++.++.++.-.|-+.. ..+.++ .-..-|
T Consensus 279 lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~------~~~~~~-------~k~~yL 344 (415)
T PF12460_consen 279 LLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF------KEADDE-------IKSNYL 344 (415)
T ss_pred HhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH------hhcChh-------hHHHHH
Confidence 3332 77899999999866664 1 111 23345778888877654442111 111122 233458
Q ss_pred HHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcc
Q 043255 172 LALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHV 251 (1843)
Q Consensus 172 ~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~ 251 (1843)
.|+..+++.+|..-+ .+...+++. .+-..+..+++.||.+.-+.+..++...|+.
T Consensus 345 ~ALs~ll~~vP~~vl----------------------~~~l~~LlP---LLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 345 TALSHLLKNVPKSVL----------------------LPELPTLLP---LLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHhhCCHHHH----------------------HHHHHHHHH---HHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 899999987743111 111223321 1334457788999999999999999999988
Q ss_pred cccchhhHHHHHHHc
Q 043255 252 FNEGNLKIIATAILG 266 (1843)
Q Consensus 252 l~~~~~k~i~~avl~ 266 (1843)
+.+ |+..+.+.+++
T Consensus 400 i~~-hl~sLI~~LL~ 413 (415)
T PF12460_consen 400 ISE-HLSSLIPRLLK 413 (415)
T ss_pred HHH-HHHHHHHHHHh
Confidence 864 78888777763
No 102
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.26 E-value=70 Score=42.59 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcc
Q 043255 19 DPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQ 98 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~ 98 (1843)
.|.-|.-|+.-+..++-.++ ..+..-+..+...-=.|+.|.++.||...-+.+--|+.---.+++|||..+|-+=+-..
T Consensus 187 spkiRs~A~~cvNq~i~~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t 265 (885)
T KOG2023|consen 187 SPKIRSHAVGCVNQFIIIQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT 265 (885)
T ss_pred ChhHHHHHHhhhhheeecCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc
Confidence 34445555555555543331 22222233343444456799999999999999888888778999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhh
Q 043255 99 FDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 99 ~D~~~~VA~aA~~sf~~~ 116 (1843)
-|.|..||-.|.+=|.+.
T Consensus 266 qd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 266 QDVDENVALEACEFWLAL 283 (885)
T ss_pred cCcchhHHHHHHHHHHHH
Confidence 999999999999977544
No 103
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=75.92 E-value=1 Score=54.35 Aligned_cols=47 Identities=21% Similarity=0.633 Sum_probs=37.4
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
+.....|.+|--+|-. .. ...-|=|.|...||.+.|.+ ..+||.|.-
T Consensus 12 ~n~~itC~LC~GYliD--AT----TI~eCLHTFCkSCivk~l~~--~~~CP~C~i 58 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLID--AT----TITECLHTFCKSCIVKYLEE--SKYCPTCDI 58 (331)
T ss_pred cccceehhhccceeec--ch----hHHHHHHHHHHHHHHHHHHH--hccCCccce
Confidence 4456799999999863 22 22359999999999999998 579999974
No 104
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.80 E-value=2 Score=57.19 Aligned_cols=76 Identities=28% Similarity=0.655 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHhc---ccc---------cCCCcccccccccccccCcccccccccccCCc
Q 043255 1751 EVKQRKWLMSMMLFVRNQNGALAEAIRIWKRNF---DKE---------FEGVEECPICYSVIHTANHSLPRLACKTCKHK 1818 (1843)
Q Consensus 1751 e~k~r~Wll~~~~~i~~qnGsi~d~l~~~k~nv---~~~---------~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~ 1818 (1843)
.+-..+|+..=+..|. +|- ++|+..++.+ ++. .-.+..|.+|-..+. +|.+.- .|||.
T Consensus 793 kD~ii~~l~~~~~~I~-qd~---~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~Ld-----lP~VhF-~CgHs 862 (933)
T KOG2114|consen 793 KDYIIKWLNKYSTIIE-QDE---DAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLD-----LPFVHF-LCGHS 862 (933)
T ss_pred HHHHHHHHHhhhHHHH-hhH---HHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccc-----cceeee-ecccH
Confidence 3456677776655554 332 3444444322 111 112358999988765 454433 49999
Q ss_pred cCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1819 FHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1819 FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
||.+|+. . +-..||-|+-
T Consensus 863 yHqhC~e---~--~~~~CP~C~~ 880 (933)
T KOG2114|consen 863 YHQHCLE---D--KEDKCPKCLP 880 (933)
T ss_pred HHHHhhc---c--CcccCCccch
Confidence 9999998 2 3468999985
No 105
>PF04641 Rtf2: Rtf2 RING-finger
Probab=75.36 E-value=2 Score=51.16 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccc-----------------cCCCcccc
Q 043255 1732 ASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIRIWKRNFDKE-----------------FEGVEECP 1794 (1843)
Q Consensus 1732 ~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGsi~d~l~~~k~nv~~~-----------------~~g~eeCa 1794 (1843)
+.=||..+.|-+....=.+....=.||+.=... .........|...|.-++.. -.+.-.||
T Consensus 40 S~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~--~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CP 117 (260)
T PF04641_consen 40 SQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKN--KDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICP 117 (260)
T ss_pred cCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcC--CCCccccccccCccceeeEEeEecCccccccccccccCCceeECC
Confidence 566888888888777777777777777653211 00111111222222222111 23444799
Q ss_pred cccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1795 ICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1795 ICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|+.-+|.. . .+-+...+|||.|-..||.+- + ....||+|-.+|
T Consensus 118 vt~~~~~~-~--~~fv~l~~cG~V~s~~alke~-k--~~~~Cp~c~~~f 160 (260)
T PF04641_consen 118 VTGKEFNG-K--HKFVYLRPCGCVFSEKALKEL-K--KSKKCPVCGKPF 160 (260)
T ss_pred CCCcccCC-c--eeEEEEcCCCCEeeHHHHHhh-c--ccccccccCCcc
Confidence 99999852 2 233455699999999999987 3 235799999886
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.93 E-value=1.7 Score=52.09 Aligned_cols=49 Identities=18% Similarity=0.645 Sum_probs=36.5
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.+-||.|++.+.-.|+.. +.| +||-....-|-..--+. -+..||-||..
T Consensus 14 ed~cplcie~mditdknf--~pc-~cgy~ic~fc~~~irq~-lngrcpacrr~ 62 (480)
T COG5175 14 EDYCPLCIEPMDITDKNF--FPC-PCGYQICQFCYNNIRQN-LNGRCPACRRK 62 (480)
T ss_pred cccCcccccccccccCCc--ccC-CcccHHHHHHHHHHHhh-ccCCChHhhhh
Confidence 345999999999887755 567 59998888886554333 35699999974
No 107
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.99 E-value=2.8e+02 Score=36.51 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=137.9
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCc-c--cchhhhHHHHHHhhhcCC-CHHHHHHHH-HHHHHHHHHhchhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKD-I--APIIPQWAFEYKRLLLDY-SREVRRATH-EMMTSLVITVGRDLA 84 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~-l--~~iLp~W~~lY~rLsiD~-~RrVRe~ah-~~~~~l~~~~gK~la 84 (1843)
..++.|...|..-|+-|++-|.++.+...+-. + .++++.-..+.....-|+ .+.+.--.- ...+.+...-...+-
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~ 285 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL 285 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH
Confidence 45666778999999999999999887332222 2 556665555555556677 333332221 233333321112222
Q ss_pred hhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCC-CCChhhHHHHH
Q 043255 85 PHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDK-AIALDELEEMH 163 (1843)
Q Consensus 85 p~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDk-s~~~EE~EaKY 163 (1843)
-..|.+++.-+--.-..|....-.|-++|-..=.+. +=..++.+.+.+-+..+...+ ++- ...+.|
T Consensus 286 ~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~-------~~~~~~~~~~----- 352 (503)
T PF10508_consen 286 ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAI-------GDAIKSGSTE----- 352 (503)
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHH-------HHHhcCCchH-----
Confidence 233555555554444578888888888886543333 222334344433333322221 110 011112
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhcc-ch-hHHhhhccCChhHHHHHHHHH
Q 043255 164 QQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSD-HK-YFLDFLKSQSVSIRSATYSVL 241 (1843)
Q Consensus 164 ~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~-~k-~fW~~~k~~~p~VR~A~y~LL 241 (1843)
+-..+|.+++.++..-++ . ..+++ . ..... -|+.+=.. .. .++++++.+-|-||-|.|.++
T Consensus 353 --lk~r~l~al~~il~~~~~----~-~~~~i------~-~~~~~---w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l 415 (503)
T PF10508_consen 353 --LKLRALHALASILTSGTD----R-QDNDI------L-SITES---WYESLSGSPLSNLLMSLLKQPFPELRCAAYRLL 415 (503)
T ss_pred --HHHHHHHHHHHHHhcCCC----C-chHHH------H-HHHHH---HHHHhcCCchHHHHHHHhcCCchHHHHHHHHHH
Confidence 334578888888743210 0 01110 0 00110 12221110 11 688999988899999999999
Q ss_pred HHHHhcCCcccccchhhHHH--HHHHcccCCC--CCcchHHHH--HHHHHHHhcCCCce-eecCcchhhhHHHHHHHHcc
Q 043255 242 KSYIKNIPHVFNEGNLKIIA--TAILGAFQEK--DPVCHSSMW--DAILLLSKRFPDCW-TVLNAQKTILNRFWHFLKNG 314 (1843)
Q Consensus 242 ~tll~~~p~~l~~~~~k~i~--~avl~~l~e~--d~~~~~~lW--ealL~l~k~~Pd~W-~~~n~kK~~lprL~~~Lr~G 314 (1843)
.+++.+. |. .+.++ +-++..+-+. ++.--.--| +.+=.+.+... + ..+-.....+.||.+|+|.|
T Consensus 416 ~~l~~~~-----Wg-~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~--~~~~~~~~~~~~~kL~~yv~eG 487 (503)
T PF10508_consen 416 QALAAQP-----WG-QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST--NASSVFDDPEYLGKLQEYVREG 487 (503)
T ss_pred HHHhcCH-----HH-HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc--chhhcCCCHHHHHHHHHHHHcC
Confidence 9999873 32 12222 1233333222 233223333 34444444333 2 12222345666999999999
Q ss_pred CCCC
Q 043255 315 CFGS 318 (1843)
Q Consensus 315 ~~Gs 318 (1843)
-|-.
T Consensus 488 py~v 491 (503)
T PF10508_consen 488 PYYV 491 (503)
T ss_pred Cccc
Confidence 7743
No 108
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=73.94 E-value=99 Score=38.12 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=108.6
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHhccC-cCcc----cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc-
Q 043255 7 EVAQHLKRLARKDPITKLKALSSLSALLKEKS-GKDI----APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG- 80 (1843)
Q Consensus 7 ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~-~~~l----~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g- 80 (1843)
.+...+-.+.-|-+.||.-||+.+...+..+- .+.+ ..++++-.+.-+| +..+=+.++-++.+.++-.+|
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhhcCC
Confidence 46677888886669999999999998887653 2222 2233333333322 333556677788888877655
Q ss_pred -hhhhhhhhhhhhhHhhcccCCcHH-HHH-HHHHHHH--hhCCChh-hHHHHHHHHHHHHHHHHHHHhccCccccCCC--
Q 043255 81 -RDLAPHLKSLMGPWWFSQFDSNSE-VSQ-AAKRSLQ--AAFPAQE-KRLDALLICATEVFIYLEENLKLTPQNLSDK-- 152 (1843)
Q Consensus 81 -K~lap~Lk~l~g~Wl~~~~D~~~~-VA~-aA~~sf~--~~Fp~~e-Kr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDk-- 152 (1843)
....-..+.+.|+-....-|.... .+| ++..++. .+|...+ .-.....-|.+.|+... .++ ..++
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~--~~~-----~~~~~~ 192 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS--ILK-----SDGNAP 192 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH--hcC-----cCCCcc
Confidence 433334444444444444554432 232 2223333 3443321 00111112222222211 111 1111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChh
Q 043255 153 AIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVS 232 (1843)
Q Consensus 153 s~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~ 232 (1843)
.+...+ -..+++++|.+.+.|+..++..++ . + ..+..+ +.|=.++.+.+..
T Consensus 193 ~~~~~~----~~~l~~aAL~aW~lLlt~~~~~~~--------~-------~-------~~~~~~---~~l~~lL~s~d~~ 243 (309)
T PF05004_consen 193 VVAAED----DAALVAAALSAWALLLTTLPDSKL--------E-------D-------LLEEAL---PALSELLDSDDVD 243 (309)
T ss_pred cccCCC----ccHHHHHHHHHHHHHHhcCCHHHH--------H-------H-------HHHHHH---HHHHHHhcCCCHH
Confidence 111111 247999999999999976632111 0 0 111222 2366678899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 043255 233 IRSATYSVLKSYIKNIP 249 (1843)
Q Consensus 233 VR~A~y~LL~tll~~~p 249 (1843)
||-|.-+.|.-+.+...
T Consensus 244 VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 244 VRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988653
No 109
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=73.82 E-value=1.3 Score=37.34 Aligned_cols=29 Identities=28% Similarity=0.815 Sum_probs=24.4
Q ss_pred ccccccccccccCccccc----ccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLPR----LACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~----~~C~~C~h~FH 1820 (1843)
+||=|-..|.-.|.++|. ++|+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 799999999987777765 57999999986
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=72.43 E-value=1.6 Score=52.64 Aligned_cols=52 Identities=35% Similarity=0.671 Sum_probs=37.6
Q ss_pred CcccccccccccccCcccccccccccC---CccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCK---HKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~---h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
...|-||.......+...=...|. |+ +..|+.|+.+|+..+++.+|.+|...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~-C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~ 132 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCS-CKGSLAYVHRSCLEKWFSIKGNITCEICKSF 132 (323)
T ss_pred CCcEEEEecccccccccccccCcc-ccCcHHHHHHHHHHhhhccccCeeeeccccc
Confidence 458999999876543211012232 44 47799999999999999999999874
No 111
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.89 E-value=2.2 Score=51.73 Aligned_cols=44 Identities=30% Similarity=0.843 Sum_probs=30.7
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..-+||||+..+.. |...|.. ||.-.+.|-.+ -.+.||.||-++
T Consensus 47 ~lleCPvC~~~l~~-----Pi~QC~n-GHlaCssC~~~-----~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP-----PIFQCDN-GHLACSSCRTK-----VSNKCPTCRLPI 90 (299)
T ss_pred hhccCchhhccCcc-----cceecCC-CcEehhhhhhh-----hcccCCcccccc
Confidence 34599999999875 5565653 55555666543 257999999875
No 112
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.41 E-value=0.45 Score=57.92 Aligned_cols=46 Identities=28% Similarity=0.612 Sum_probs=37.3
Q ss_pred CcccccccccccccCccccccccc--ccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
++.|+||...+... . -+|. .|||.+|..||.+|+.+ +..||-||..
T Consensus 196 v~sl~I~~~slK~~-y----~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~re 243 (465)
T KOG0827|consen 196 VGSLSICFESLKQN-Y----DKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRRE 243 (465)
T ss_pred HhhhHhhHHHHHHH-H----HHHHHHhhcccchhhHHHHHHHH--HHHhHHHHhh
Confidence 56899999988742 1 1243 69999999999999997 6899999874
No 113
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=71.28 E-value=1.3e+02 Score=38.84 Aligned_cols=248 Identities=17% Similarity=0.160 Sum_probs=134.5
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhh
Q 043255 11 HLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSL 90 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l 90 (1843)
..|.|.-.|+.-|.=||.-+..+.. ..+.+.-...-.++..|++..||..|-.+...+.......+.+. +
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~ 153 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRT-------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---L 153 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---H
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcc-------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---H
Confidence 3456667788899999999988652 22445555666778889999999999999999888755443332 3
Q ss_pred hhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhcc-Cc-------cccCCC-CCChhhHH-
Q 043255 91 MGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKL-TP-------QNLSDK-AIALDELE- 160 (1843)
Q Consensus 91 ~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~-Tp-------~TLSDk-s~~~EE~E- 160 (1843)
++.-.....|++..|..+|..++... -.+ .+...-.-......+...+.. +| ..|..- ...+++..
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~ 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCN---DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK 229 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCT---HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccC---cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH
Confidence 33334445999999999999999988 111 111111111112222221111 11 111111 12222221
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCCh
Q 043255 161 EMHQQVISSSLL---------ALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSV 231 (1843)
Q Consensus 161 aKY~RVvssSL~---------aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p 231 (1843)
.++-..+..-|. +...++ .+.+ . . .. ...+.. .+-+++.++++
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~-~l~~-------~------~----~~-------~~~~~~---~L~~lL~s~~~ 281 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLII-KLSP-------S------P----EL-------LQKAIN---PLIKLLSSSDP 281 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSS-------S------H----HH-------HHHHHH---HHHHHHTSSSH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHH-Hhhc-------c------h----HH-------HHhhHH---HHHHHhhcccc
Confidence 122222222111 111111 1100 0 0 00 111221 25677888999
Q ss_pred hHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHH
Q 043255 232 SIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFL 311 (1843)
Q Consensus 232 ~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~L 311 (1843)
.+|-.+.+.+..++.+.|..+... . ..++....+.++.+...-.+.+..+.. +..+ +.+++.|.+|+
T Consensus 282 nvr~~~L~~L~~l~~~~~~~v~~~--~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~------~~Il~eL~~~l 348 (526)
T PF01602_consen 282 NVRYIALDSLSQLAQSNPPAVFNQ--S---LILFFLLYDDDPSIRKKALDLLYKLAN--ESNV------KEILDELLKYL 348 (526)
T ss_dssp HHHHHHHHHHHHHCCHCHHHHGTH--H---HHHHHHHCSSSHHHHHHHHHHHHHH----HHHH------HHHHHHHHHHH
T ss_pred hhehhHHHHHHHhhcccchhhhhh--h---hhhheecCCCChhHHHHHHHHHhhccc--ccch------hhHHHHHHHHH
Confidence 999999999999998875444321 1 112222336777777777776666664 2233 33788888888
Q ss_pred Hc
Q 043255 312 KN 313 (1843)
Q Consensus 312 r~ 313 (1843)
+.
T Consensus 349 ~~ 350 (526)
T PF01602_consen 349 SE 350 (526)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 114
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.46 E-value=8.3 Score=43.49 Aligned_cols=61 Identities=20% Similarity=0.432 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhc-cCCCCceEE-EEeccccEEEEEEEe------cCCceEEEEecCCCCCCCcceEeec
Q 043255 1684 LIANELSQIKKA-NIADENFSL-TVSKSANEVVATYTK------DETKMDLIIRLPASYPLRPVDVECM 1744 (1843)
Q Consensus 1684 li~~el~~v~~~-~~~~~~~~V-kv~~~~~EV~a~Y~i------de~~~el~I~lP~~YPL~~v~V~~~ 1744 (1843)
-|+.|++.|.+. +.....+.| .+|.+-.+|+-.+.= +...+++-|++|.+||+.+++|...
T Consensus 7 ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~ 75 (200)
T KOG0418|consen 7 RINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFI 75 (200)
T ss_pred HHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeee
Confidence 467788888642 112233333 355556677766651 2346899999999999999999764
No 115
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=67.16 E-value=21 Score=38.46 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeec
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECM 1744 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~ 1744 (1843)
-|.+|++.+++.. ..++.|.... +-.+..+.+... .....+.|.||++||..++.|...
T Consensus 3 Rl~~E~~~l~~~~--~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~ 68 (141)
T cd00195 3 RLQKELKDLKKDP--PSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFV 68 (141)
T ss_pred hHHHHHHHHHhCC--CCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEe
Confidence 4678899887642 3456666543 445666665543 245789999999999999999874
No 116
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=67.04 E-value=2 Score=36.41 Aligned_cols=29 Identities=31% Similarity=0.868 Sum_probs=23.5
Q ss_pred ccccccccccccCccccc----ccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLPR----LACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~----~~C~~C~h~FH 1820 (1843)
.||-|-..|.-.+.++|. .+|+.|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 699999999876665543 68999999986
No 117
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.68 E-value=65 Score=36.83 Aligned_cols=160 Identities=20% Similarity=0.284 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhccCcCcccchhhhHHHHHHhh---------------hcCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043255 23 KLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRL---------------LLDYSREVRRATHEMMTSLVITVGRDLAPHL 87 (1843)
Q Consensus 23 K~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rL---------------siD~~RrVRe~ah~~~~~l~~~~gK~lap~L 87 (1843)
|.-||.-|.++++..+... +..+|..++|-- .-|++.+||.+|-++...++... .+||
T Consensus 3 R~~Al~~L~al~k~~~~r~---l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L 75 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRS---LFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS----KPFL 75 (182)
T ss_pred hHHHHHHHHHHHHhcCCce---eHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHH
Confidence 5678999999988754443 667899888865 44999999999999999999875 3444
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHH
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVI 167 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVv 167 (1843)
.. +. |+ +.-+.+|... . .+..-+...-...+-++ |+ .++...++
T Consensus 76 ~~------Ae--~~-----~~~~~sFtsl---S-~tLa~~i~~lH~~Ll~~---L~----------------~E~~~~~l 119 (182)
T PF13251_consen 76 AQ------AE--ES-----KGPSGSFTSL---S-STLASMIMELHRGLLLA---LQ----------------AEKSPPVL 119 (182)
T ss_pred HH------HH--hc-----CCCCCCcccH---H-HHHHHHHHHHHHHHHHH---Hh----------------cccccHHH
Confidence 33 00 00 0001234322 1 23333333333333332 21 11123478
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 168 SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
...|..++.|++..|= +.+. .+.+ .+++. ....++.|+|+.||-+...++..++..
T Consensus 120 ~q~lK~la~Lv~~tPY--------~rL~----------~~ll---~~~v~---~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPY--------HRLP----------PGLL---TEVVT---QVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCCh--------hhcC----------HhHH---HHHHH---HHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8888888888866532 2221 1122 23333 266778899999999999999999887
Q ss_pred CC
Q 043255 248 IP 249 (1843)
Q Consensus 248 ~p 249 (1843)
.|
T Consensus 176 ~~ 177 (182)
T PF13251_consen 176 QP 177 (182)
T ss_pred CC
Confidence 54
No 118
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=65.99 E-value=6.1 Score=43.64 Aligned_cols=40 Identities=33% Similarity=0.615 Sum_probs=24.5
Q ss_pred cccccccccccccCc---cccccccc--ccCC-ccCHhhHHHHHhc
Q 043255 1791 EECPICYSVIHTANH---SLPRLACK--TCKH-KFHSACLYKWFST 1830 (1843)
Q Consensus 1791 eeCaICys~~~~~d~---~lP~~~C~--~C~h-~FH~~CL~kWf~~ 1830 (1843)
..||||++.=|..-- .-=.+-|. -|+- .=|+.||.+.-+.
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 479999998774210 00113343 2665 4589999998773
No 119
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=64.52 E-value=4.4 Score=48.62 Aligned_cols=45 Identities=27% Similarity=0.710 Sum_probs=34.7
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
.||||+..+.... |...-.+|||.-|..|+..-..+ + -+||+|-.
T Consensus 160 ncPic~e~l~~s~---~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSF---EDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred CCchhHHHhcccc---ccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 4999999998543 22334589999998888887775 3 89999975
No 120
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.84 E-value=3 Score=48.75 Aligned_cols=52 Identities=27% Similarity=0.674 Sum_probs=34.4
Q ss_pred CCcccccccccccccCccccc----ccccccCCccCHhhHHHHHhcCC------CCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPR----LACKTCKHKFHSACLYKWFSTSH------KSSCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~----~~C~~C~h~FH~~CL~kWf~~s~------~stCPlCR~~ 1842 (1843)
+..-|=||+..=+ |.++.. =+|.-=.|-.|..||++|+...+ .-+||-|+.+
T Consensus 19 ~eR~CWiCF~Tde--Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 19 LERCCWICFATDE--DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cceeEEEEeccCc--ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3446999998633 333321 13444468899999999998432 2389999975
No 121
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=62.83 E-value=39 Score=33.87 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=70.3
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHhccCc--Cc-c-cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 11 HLKRLARKDPITKLKALSSLSALLKEKSG--KD-I-APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~~~~~--~~-l-~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
.++.|.+.|.-.|..|+.-|..++...+. .. + .+++|....+ ..|++.+||+.+-.+++.|+.........+
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL----LKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH----HhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45566677777899999999988765321 11 2 2555555544 347899999999999999987554333333
Q ss_pred hh-hhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 87 LK-SLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 87 Lk-~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
.+ .+++...--+.|.+..+.+.|...|...
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33 3677777777777888888888888654
No 122
>PLN02189 cellulose synthase
Probab=62.61 E-value=5.2 Score=55.14 Aligned_cols=52 Identities=21% Similarity=0.549 Sum_probs=42.5
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..|.||-+.+.....--|-+.|..|+-.....|. +.=+..++..||-|+..+
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 3899999998854444477899999999999998 566666889999999753
No 123
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.44 E-value=4.4 Score=32.00 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=18.6
Q ss_pred ccccccccccccCcccccccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH 1820 (1843)
.||-|...+... .+.|+.|||.|-
T Consensus 2 ~CP~C~~~V~~~-----~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPES-----AKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchhh-----cCcCCCCCCCCc
Confidence 699999988643 267989999883
No 124
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.77 E-value=6.6 Score=36.21 Aligned_cols=33 Identities=24% Similarity=0.718 Sum_probs=27.0
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHH
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYK 1826 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~k 1826 (1843)
..|++|-..|..+| ..+.|+.||-.+|+.|-.+
T Consensus 6 ~~C~~Cg~~~~~~d---DiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD---DIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCC---CEEECCCCCCcccHHHHhh
Confidence 47999999997544 2379999999999999654
No 125
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.37 E-value=4.2 Score=48.22 Aligned_cols=29 Identities=28% Similarity=0.783 Sum_probs=22.0
Q ss_pred cCCccCHhhHHHHHhcC-----------CCCCCCCCCCCC
Q 043255 1815 CKHKFHSACLYKWFSTS-----------HKSSCPLCQSPF 1843 (1843)
Q Consensus 1815 C~h~FH~~CL~kWf~~s-----------~~stCPlCR~~~ 1843 (1843)
|+-.....||-+||-.- ++-+||+||++|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 45556678999999842 345999999976
No 126
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.26 E-value=38 Score=38.75 Aligned_cols=89 Identities=25% Similarity=0.323 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHH---HHHhchh
Q 043255 6 SEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSL---VITVGRD 82 (1843)
Q Consensus 6 ~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l---~~~~gK~ 82 (1843)
+=+.+-|--|.-++.=-+.=|-+.+.++++...++.+..+||.-+.--++--.--+..|...+-+++..| ...+|-.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3344555556655555667788888888887445555555555544444545568999999999999999 5689999
Q ss_pred hhhhhhhhhhhH
Q 043255 83 LAPHLKSLMGPW 94 (1843)
Q Consensus 83 lap~Lk~l~g~W 94 (1843)
+.||+++++|+-
T Consensus 118 LvPyyrqLLp~l 129 (183)
T PF10274_consen 118 LVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 127
>PRK09687 putative lyase; Provisional
Probab=59.11 E-value=1.9e+02 Score=35.16 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=60.9
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh--chhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV--GRDLAPHL 87 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~--gK~lap~L 87 (1843)
..++.|...|...|..|...|..+ . .+++ +..+ -++.-|.+..||..+-.+++.|-..- .....|.|
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~-~---~~~~------~~~l-~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L 95 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLR-G---GQDV------FRLA-IELCSSKNPIERDIGADILSQLGMAKRCQDNVFNIL 95 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-C---cchH------HHHH-HHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 345667788888888888887653 2 1221 1122 23566899999999999999975311 12344444
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhC
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAF 117 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~F 117 (1843)
..+ ...|++..|-..|-.++-..-
T Consensus 96 ~~l------~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 96 NNL------ALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHH------HhcCCCHHHHHHHHHHHhccc
Confidence 443 468999999999999997653
No 128
>PLN02436 cellulose synthase A
Probab=56.84 E-value=6.9 Score=54.06 Aligned_cols=50 Identities=24% Similarity=0.636 Sum_probs=41.4
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.|-||-+.+..+..--|-+.|..|+-.....|. ..=+..++..||-|+..
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTR 87 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCc
Confidence 899999998754333477899999999999998 55566688999999975
No 129
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=55.92 E-value=1e+02 Score=41.49 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=97.3
Q ss_pred HHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHH-HHHHHHHHhccCccc
Q 043255 70 EMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATE-VFIYLEENLKLTPQN 148 (1843)
Q Consensus 70 ~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~e-Il~~~~d~Lk~Tp~T 148 (1843)
..++.+++..|+|+-|||++|+|-=+--..-+.+-|-..|.+-.. ....+++-|++| .+.|+.-.|-
T Consensus 780 ~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis-------~la~Vlktc~ee~~m~~lGvvLy----- 847 (1172)
T KOG0213|consen 780 LGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLIS-------SLAKVLKTCGEEKLMGHLGVVLY----- 847 (1172)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHH-------HHHHHHHhccHHHHHHHhhHHHH-----
Confidence 456677788999999999999999777778888888887777665 445678888766 4455543342
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhcc
Q 043255 149 LSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKS 228 (1843)
Q Consensus 149 LSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~ 228 (1843)
|-.-+-|.-|+.+-|.|+..+.... ...+ ..-.-+ .+++.+.+ .+|+
T Consensus 848 --------EylgeeypEvLgsILgAikaI~nvi---gm~k-----m~pPi~-------dllPrltP----------ILkn 894 (1172)
T KOG0213|consen 848 --------EYLGEEYPEVLGSILGAIKAIVNVI---GMTK-----MTPPIK-------DLLPRLTP----------ILKN 894 (1172)
T ss_pred --------HhcCcccHHHHHHHHHHHHHHHHhc---cccc-----cCCChh-------hhcccchH----------hhhh
Confidence 2223347778999999988877654 0111 110000 12222223 3455
Q ss_pred CChhHHHHHHHHHHHHHhcCCcccccchhhHHHH
Q 043255 229 QSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIAT 262 (1843)
Q Consensus 229 ~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~ 262 (1843)
+--.|-.....|+.+++.+.|+.+.....=.||-
T Consensus 895 rheKVqen~IdLvg~IadrgpE~v~aREWMRIcf 928 (1172)
T KOG0213|consen 895 RHEKVQENCIDLVGTIADRGPEYVSAREWMRICF 928 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 5667888999999999999999875433333543
No 130
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=53.94 E-value=4.5 Score=54.20 Aligned_cols=44 Identities=32% Similarity=0.678 Sum_probs=35.0
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
..|.||.+ . . .- .-..|+|.|...|+.+-++.+....||+||..
T Consensus 455 ~~c~ic~~--~-~-~~----~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~ 498 (674)
T KOG1001|consen 455 HWCHICCD--L-D-SF----FITRCGHDFCVECLKKSIQQSENAPCPLCRNV 498 (674)
T ss_pred cccccccc--c-c-cc----eeecccchHHHHHHHhccccccCCCCcHHHHH
Confidence 69999999 2 2 21 22369999999999999998766689999964
No 131
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=53.74 E-value=45 Score=36.94 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-|..|+..+++. ....+.+... .+-.+..+++.-- .....+.|.+|++||..+++|.+..+
T Consensus 6 Rl~~E~~~l~~~--~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~ 73 (152)
T PTZ00390 6 RIEKETQNLAND--PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK 73 (152)
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC
Confidence 467888888753 2334555443 2334556665521 23578999999999999999988543
No 132
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.64 E-value=8.1 Score=46.77 Aligned_cols=48 Identities=25% Similarity=0.567 Sum_probs=34.6
Q ss_pred CCCcccccccccccccCcccccccc-cccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLAC-KTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C-~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+..+-|-||-.-+.- .| .+|+|+..-.|-.+-=.-..+..||+||..|
T Consensus 59 Een~~C~ICA~~~TY--------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTY--------SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceE--------EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 344569999876652 23 3799999999976654444567999999865
No 133
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.34 E-value=5.1 Score=35.59 Aligned_cols=44 Identities=25% Similarity=0.649 Sum_probs=29.0
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhc----CCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST----SHKSSCPLCQ 1840 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~----s~~stCPlCR 1840 (1843)
|+||...- .+. .-+.|..|+..||..|+..=... ...=.||.|+
T Consensus 2 C~vC~~~~--~~~--~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD--DDG--DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSC--TTS--SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcC--CCC--CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88999932 233 33789999999999998543221 1123677765
No 134
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.26 E-value=24 Score=38.17 Aligned_cols=61 Identities=26% Similarity=0.492 Sum_probs=42.8
Q ss_pred cCCceEEEEecCCCCCCCcceEeecc-------------ccccCHHHHH------HHHHHHHHHHHhcccc---HHHHHH
Q 043255 1720 DETKMDLIIRLPASYPLRPVDVECMR-------------SLGISEVKQR------KWLMSMMLFVRNQNGA---LAEAIR 1777 (1843)
Q Consensus 1720 de~~~el~I~lP~~YPL~~v~V~~~~-------------~vgvse~k~r------~Wll~~~~~i~~qnGs---i~d~l~ 1777 (1843)
+..+..+.+.||.+||..+++|.... +..+=.+||. ..++++|.++--.|.+ -..|-+
T Consensus 74 egl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAe 153 (175)
T KOG0421|consen 74 EGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAE 153 (175)
T ss_pred cCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHH
Confidence 35677889999999999999887643 2233357775 4577888877666543 256677
Q ss_pred HHH
Q 043255 1778 IWK 1780 (1843)
Q Consensus 1778 ~~k 1780 (1843)
+|+
T Consensus 154 lW~ 156 (175)
T KOG0421|consen 154 LWS 156 (175)
T ss_pred Hhc
Confidence 786
No 135
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=52.28 E-value=51 Score=42.99 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=67.7
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcc----cchh-----------hhHHHHHHhhhcCCCHHHHHHHHHHHH
Q 043255 9 AQHLKRLARKDPITKLKALSSLSALLKEKSGKDI----APII-----------PQWAFEYKRLLLDYSREVRRATHEMMT 73 (1843)
Q Consensus 9 ~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l----~~iL-----------p~W~~lY~rLsiD~~RrVRe~ah~~~~ 73 (1843)
+-++..+-|-||-.|.+||++|-+++++.+--.+ .++| .+-.++|.|+.++|+ -||.+|-+++.
T Consensus 434 Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~-ivRsaAv~aLs 512 (898)
T COG5240 434 VDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN-IVRSAAVQALS 512 (898)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 4566778899999999999999999986542221 1111 134789999999986 59999999988
Q ss_pred HHHHHhchhhhh-hhhhhhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 74 SLVITVGRDLAP-HLKSLMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 74 ~l~~~~gK~lap-~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
.+.-.......| -.+.+ -=-...|.|.+|...|.=+++
T Consensus 513 kf~ln~~d~~~~~sv~~~---lkRclnD~DdeVRdrAsf~l~ 551 (898)
T COG5240 513 KFALNISDVVSPQSVENA---LKRCLNDQDDEVRDRASFLLR 551 (898)
T ss_pred HhccCccccccHHHHHHH---HHHHhhcccHHHHHHHHHHHH
Confidence 776544322222 22222 223456888787776655554
No 136
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.10 E-value=11 Score=40.26 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=44.6
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCccc---------chhhhHHHHHHhhh-cCCCHHHHHHHHHHHHHHH
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIA---------PIIPQWAFEYKRLL-LDYSREVRRATHEMMTSLV 76 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~---------~iLp~W~~lY~rLs-iD~~RrVRe~ah~~~~~l~ 76 (1843)
..+|||.+|++.-|.|||.=|.-+|...+++.+. .-+-.|...+.-+- -|....||+.|+.+...|-
T Consensus 42 ~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 42 YLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 5789999999999999999999888765432210 01111211111112 2567899999999988764
No 137
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=50.94 E-value=59 Score=35.78 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVS-KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
.-|++|++.+++. ....+++... .+-.+..++..-- +....+.|.||++||..+++|.+..+
T Consensus 4 ~Rl~kE~~~l~~~--~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (147)
T PLN00172 4 KRIQKEHKDLLKD--PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK 72 (147)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC
Confidence 3567888888753 1234555543 2334555555422 23578999999999999999988543
No 138
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=50.92 E-value=7 Score=44.16 Aligned_cols=41 Identities=27% Similarity=0.698 Sum_probs=32.5
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
-|.||-..+.. | .-.+|||.|.+.|.-+=++. -.+|-.|..
T Consensus 198 ~C~iCKkdy~s-----p--vvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk 238 (259)
T COG5152 198 LCGICKKDYES-----P--VVTECGHSFCSLCAIRKYQK--GDECGVCGK 238 (259)
T ss_pred eehhchhhccc-----h--hhhhcchhHHHHHHHHHhcc--CCcceecch
Confidence 69999998863 2 23579999999998887774 368999975
No 139
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=50.85 E-value=52 Score=36.96 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH-hchh
Q 043255 4 IDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT-VGRD 82 (1843)
Q Consensus 4 lD~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~-~gK~ 82 (1843)
+||-+-..++.|.=+|+.-|.-||.-|..++.+. .-.+++-+ ...+-++..|.+..||..|..++..+..+ -+..
T Consensus 23 ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l---~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 23 VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQL---FSRILKLLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhh---hHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 4566677888899999999999999999998752 22233322 23344566899999999999999999988 6677
Q ss_pred hhhhhhhhhhh
Q 043255 83 LAPHLKSLMGP 93 (1843)
Q Consensus 83 lap~Lk~l~g~ 93 (1843)
+..+++.++..
T Consensus 99 i~~~~~e~i~~ 109 (178)
T PF12717_consen 99 IYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHH
Confidence 88888888873
No 140
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=50.00 E-value=82 Score=41.61 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=90.4
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 7 EVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 7 ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
=+-.+|.+.+-|+..-|..|-....+....-+...|+.+||+=..-|..- ..|--+.+-++.+.++..+.+.++-+
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 34478889999999999999999999887777777887887655544433 67778888999999999999999999
Q ss_pred hhhhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 87 LKSLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 87 Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
++.++|----.++|++++|.++|.+++.++
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999754
No 141
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.89 E-value=41 Score=44.92 Aligned_cols=118 Identities=20% Similarity=0.261 Sum_probs=83.9
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcc-cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchh-----h
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDI-APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRD-----L 83 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l-~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~-----l 83 (1843)
+++|-+.-.|..+|.+=|+-+-.++.--+.+.+ +.|+|+-.. -..|.+.-+||.|-..+..|+.+++++ +
T Consensus 334 ~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~----G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~El 409 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVAL----GFLDTNATLREQTLKSMAVLAPKLSKRNLNGEL 409 (690)
T ss_pred hHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHh----hcccCCHHHHHHHHHHHHHHHhhhchhhhcHHH
Confidence 556667778999999999999999876655555 445444433 234999999999999999999999877 5
Q ss_pred hhhhhhhhh----------hHhhcccC-------CcHHHHHHHHHHHHhhCCChhhHHHHHHHHHH
Q 043255 84 APHLKSLMG----------PWWFSQFD-------SNSEVSQAAKRSLQAAFPAQEKRLDALLICAT 132 (1843)
Q Consensus 84 ap~Lk~l~g----------~Wl~~~~D-------~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~ 132 (1843)
.+||.++-+ .=..|--+ ..+--+.+-..|+.+-|++ .|..+++.+|.+
T Consensus 410 lr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~p-aR~a~v~~l~at 474 (690)
T KOG1243|consen 410 LRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVP-ARKAGVLALAAT 474 (690)
T ss_pred HHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCC-chhhhhHHHhhc
Confidence 688888776 11222222 3344455555678888987 477777776643
No 142
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=49.69 E-value=61 Score=35.13 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCCCCceEEEEec--cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1685 IANELSQIKKANIADENFSLTVSK--SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~--~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
|.+|++.+++.. ...+.|.... +-.+..+.+.- + +..+.+.|.||++||-.++.|....
T Consensus 3 l~~E~~~~~~~~--~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~ 69 (145)
T smart00212 3 LLKELKELLKDP--PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT 69 (145)
T ss_pred HHHHHHHHHhCC--CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC
Confidence 567888887532 2356655543 45566666652 2 3457999999999999999997743
No 143
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=49.35 E-value=7.3 Score=49.64 Aligned_cols=34 Identities=29% Similarity=0.756 Sum_probs=26.8
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHH
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLY 1825 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~ 1825 (1843)
...|.+||.-....-.+| +.|..|++.||..|-.
T Consensus 168 n~qc~vC~~g~~~~~Nrm--lqC~~C~~~fHq~Chq 201 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRM--LQCDKCRQWYHQACHQ 201 (464)
T ss_pred cceeeeeecCCcCcccee--eeecccccHHHHHhcc
Confidence 346999997766543465 7899999999999964
No 144
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=48.80 E-value=7.2 Score=44.92 Aligned_cols=24 Identities=46% Similarity=1.005 Sum_probs=21.3
Q ss_pred ccccccccccccCcccccccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH 1820 (1843)
.|+||+++|-+ |...|++|+.+|.
T Consensus 262 vCsVCLsvfc~-----p~~~C~~C~skF~ 285 (296)
T COG5242 262 VCSVCLSVFCR-----PVPVCKKCKSKFS 285 (296)
T ss_pred ehhhhheeecC-----CcCcCcccccccc
Confidence 79999999964 6789999999996
No 145
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=48.60 E-value=7.4e+02 Score=32.30 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 043255 21 ITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVI 77 (1843)
Q Consensus 21 tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~ 77 (1843)
.+|.||+++|.+.++..+. .++..-|--.=.=+--+....+|.++-+++..+++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~ 58 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIK 58 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999987655 44555665433333335566788888877777775
No 146
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=8.7 Score=50.53 Aligned_cols=41 Identities=39% Similarity=1.020 Sum_probs=31.3
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
+..++|+|||..+ .. +-.+|. |..|+++|... +..||+|+.
T Consensus 477 ~~~~~~~~~~~~~-~~-------~~~~~~---~~~~l~~~~~~--~~~~pl~~~ 517 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SA-------RITPCS---HALCLRKWLYV--QEVCPLCHT 517 (543)
T ss_pred cccCcchHHHHHH-Hh-------cccccc---chhHHHhhhhh--ccccCCCch
Confidence 4456999999988 11 112455 99999999995 689999986
No 147
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=48.41 E-value=11 Score=52.23 Aligned_cols=50 Identities=24% Similarity=0.626 Sum_probs=41.9
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.|-||-+.+.....--|-+.|..|+-...+.|. +.=+..++..||-|+..
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTK 68 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCc
Confidence 899999998865444578999999999999998 55556678899999875
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=48.05 E-value=1.3e+02 Score=34.59 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHH
Q 043255 59 DYSREVRRATHEMMTSLVIT-VGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIY 137 (1843)
Q Consensus 59 D~~RrVRe~ah~~~~~l~~~-~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~ 137 (1843)
+.++=-|-+|.+-...++.. .+.++.|.|+++++|--.+..=.++.|-.++.++++..-...+...+++.-|..+++-.
T Consensus 49 Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 49 ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPV 128 (183)
T ss_pred ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444566888888888888 88999999999999999999999999999999999988666678899999999999988
Q ss_pred HHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHH
Q 043255 138 LEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALA 175 (1843)
Q Consensus 138 ~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~ 175 (1843)
+.-... ....++|.-.- ....+...+|...|..+.
T Consensus 129 ln~f~~-k~~n~gd~i~y--~~~~~~~dlI~etL~~lE 163 (183)
T PF10274_consen 129 LNLFKN-KNVNLGDGIDY--RKRKNLGDLIQETLELLE 163 (183)
T ss_pred HHHHHh-cccCCCccccc--ccccchhHHHHHHHHHHH
Confidence 753332 22455653111 223334455666665554
No 149
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=25 Score=40.62 Aligned_cols=63 Identities=21% Similarity=0.518 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCC------CCCCCCCCCCC
Q 043255 1772 LAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSH------KSSCPLCQSPF 1843 (1843)
Q Consensus 1772 i~d~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~------~stCPlCR~~~ 1843 (1843)
|...-..|-+.-| -...|..|-..+..+|. .-..|-|.||=.||..|-..-- --.||-|..++
T Consensus 36 iVQSYLqWL~DsD----Y~pNC~LC~t~La~gdt-----~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 36 IVQSYLQWLQDSD----YNPNCRLCNTPLASGDT-----TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred hHHHHHHHHhhcC----CCCCCceeCCccccCcc-----eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 5666666665443 34589999999887652 1126999999999999987321 13799998754
No 151
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=45.94 E-value=11 Score=52.72 Aligned_cols=62 Identities=23% Similarity=0.533 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcccccC-------------CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC
Q 043255 1772 LAEAIRIWKRNFDKEFE-------------GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL 1838 (1843)
Q Consensus 1772 i~d~l~~~k~nv~~~~~-------------g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl 1838 (1843)
...+|.-|+.+...++. +.--|.||..+++.... ...|+|.+...|+.-|... ++.||.
T Consensus 1122 ~lk~l~e~~~~~~~~i~~~es~~~y~~~~~~~~~c~ic~dil~~~~~------I~~cgh~~c~~c~~~~l~~--~s~~~~ 1193 (1394)
T KOG0298|consen 1122 YLKGLKESKADTPCKIAQTESDVRYLMNLSGHFVCEICLDILRNQGG------IAGCGHEPCCRCDELWLYA--SSRCPI 1193 (1394)
T ss_pred HHHHHHHHhccCccccCCccchHHHHHHhhcccchHHHHHHHHhcCC------eeeechhHhhhHHHHHHHH--hccCcc
Confidence 36677777766543332 34489999999984322 2379999999999999996 589999
Q ss_pred CCC
Q 043255 1839 CQS 1841 (1843)
Q Consensus 1839 CR~ 1841 (1843)
|.+
T Consensus 1194 ~ks 1196 (1394)
T KOG0298|consen 1194 CKS 1196 (1394)
T ss_pred hhh
Confidence 974
No 152
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=45.90 E-value=1e+03 Score=33.00 Aligned_cols=113 Identities=20% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCHHHH-HHHHhhhcCChhhHHHHHHHHHHHHhccCcCccc--chhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc
Q 043255 4 IDSEVA-QHLKRLARKDPITKLKALSSLSALLKEKSGKDIA--PIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG 80 (1843)
Q Consensus 4 lD~ev~-v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~--~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g 80 (1843)
++++.+ .-++.+..-|...=.+-|+......+..+..... ..+.-+.-+++--.+.+++.+|+.-..++..+..+-+
T Consensus 35 ~~~e~V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~~~~~~~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~ 114 (727)
T PF12726_consen 35 FPEENVDQFFNMLDNWDIQRILPGLDKAKSILESIEPMTRSRALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKP 114 (727)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCC
Confidence 344444 5555666777777777888887776654432211 2222233344444456677788887766666654333
Q ss_pred hhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC
Q 043255 81 RDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA 119 (1843)
Q Consensus 81 K~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~ 119 (1843)
-.+. +.++|....-.||.++.+.+-|...+....+.
T Consensus 115 ~~~~---~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 115 LKLP---KELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred cccc---ccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 2221 77788888889999999999999999987664
No 153
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=45.68 E-value=11 Score=44.83 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=36.1
Q ss_pred cccccccccccccCccccccccc--ccCCccCHhhHHHHHhc-C------CCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFST-S------HKSSCPLCQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~-s------~~stCPlCR~ 1841 (1843)
.+|-+|+..+.+.+... ..|+ .|+-.+|..||..-+.. + -...||.|+.
T Consensus 183 ~~celc~~ei~e~~~~~--a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~ 240 (276)
T KOG3005|consen 183 VECELCEKEILETDWSR--ATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK 240 (276)
T ss_pred hhhHHHHHHhcccccee--ccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc
Confidence 48999999996555432 4566 79999999999994442 1 1248999986
No 154
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=45.54 E-value=8.6 Score=44.63 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=34.4
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCC--CCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCP--LCQ 1840 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCP--lCR 1840 (1843)
+-||||.+...- +..+--..-+.|.|.....|..+-|.+ |.-.|| -|.
T Consensus 11 ~~CPvCksDrYL-nPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~ 60 (314)
T COG5220 11 RRCPVCKSDRYL-NPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCG 60 (314)
T ss_pred ccCCcccccccc-CCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHH
Confidence 479999998663 211111222359999999999999997 678999 563
No 155
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.95 E-value=8.8 Score=46.08 Aligned_cols=42 Identities=26% Similarity=0.662 Sum_probs=33.8
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.|-||-..|.. | .-..|+|.|...|--+=++. ...|++|..+
T Consensus 243 ~c~icr~~f~~-----p--Vvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~ 284 (313)
T KOG1813|consen 243 KCFICRKYFYR-----P--VVTKCGHYFCEVCALKPYQK--GEKCYVCSQQ 284 (313)
T ss_pred ccccccccccc-----c--hhhcCCceeehhhhcccccc--CCcceecccc
Confidence 69999999873 1 23479999999999888775 3699999875
No 156
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.91 E-value=16 Score=42.84 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=37.9
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
-||||...+... +|=....+|||.|...|..+-++. ...||+|-.++
T Consensus 223 iCpvtrd~LtNt---~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~pl 269 (303)
T KOG3039|consen 223 ICPVTRDTLTNT---TPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPL 269 (303)
T ss_pred ecccchhhhcCc---cceEEeccCCcEeeHHHHHHhccc--cccccCCCCcC
Confidence 699999999743 343445699999999999999985 47999998763
No 157
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=44.86 E-value=15 Score=51.06 Aligned_cols=52 Identities=19% Similarity=0.618 Sum_probs=42.5
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
...|-||-+.+.....--|-+.|..|+-.....|. ..=+..++..||-|+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTR 66 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCc
Confidence 45799999998865444578999999999999998 55555678899999875
No 158
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.73 E-value=5.5 Score=47.44 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=8.4
Q ss_pred Ccccccccccc
Q 043255 1790 VEECPICYSVI 1800 (1843)
Q Consensus 1790 ~eeCaICys~~ 1800 (1843)
..-|+|||+.-
T Consensus 300 ~~LC~ICmDaP 310 (350)
T KOG4275|consen 300 RRLCAICMDAP 310 (350)
T ss_pred HHHHHHHhcCC
Confidence 34699999864
No 159
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=44.17 E-value=7.7e+02 Score=31.21 Aligned_cols=105 Identities=13% Similarity=0.230 Sum_probs=65.4
Q ss_pred cccCC-CCCcchHHHHHHHHHHHhcC-CCceeecCcchhhhHHHHHHHHccCCCCCc-------cchhhHHHHhhhCCcC
Q 043255 266 GAFQE-KDPVCHSSMWDAILLLSKRF-PDCWTVLNAQKTILNRFWHFLKNGCFGSQQ-------VSYPALVLFLDVVPPK 336 (1843)
Q Consensus 266 ~~l~e-~d~~~~~~lWealL~l~k~~-Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~-------~~yp~LlplLs~iP~~ 336 (1843)
.-+.+ .+...+..+|.+++.|.... -+.|+ .+.....+.++++..+.+ ..|..|.- .+-.+
T Consensus 239 ~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~-------~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy---~~~~~ 308 (372)
T PF12231_consen 239 EMIKSKDEYKLAMQIWSVVILLLGSSRLDSWE-------HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY---ASNPN 308 (372)
T ss_pred HHHhCcCCcchHHHHHHHHHHHhCCchhhccH-------hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HhcCC
Confidence 34455 56778889999998888654 46676 466777777777665443 34666665 22223
Q ss_pred cCCChHHHHHHHHHHHhhhcCCCCCcc---hHHHHHHHHHHHHHHHH
Q 043255 337 AVAADKFFQDFFNSLWAGRNEPHSSNS---DHKAFFRAFKECFLWGL 380 (1843)
Q Consensus 337 vl~~~~f~~~ff~al~~Gl~~r~~s~s---~~~a~~say~Ec~~~~l 380 (1843)
......-.+-+..-+..++..+..++. -+.+++.+|..-+.|..
T Consensus 309 ~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~f 355 (372)
T PF12231_consen 309 ELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYAF 355 (372)
T ss_pred ccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHHh
Confidence 233445666677777777665544432 25666777776666654
No 160
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=43.55 E-value=6.2e+02 Score=39.04 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=141.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHH
Q 043255 55 RLLLDYSREVRRATHEMMTSLVITVGRD-LAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATE 133 (1843)
Q Consensus 55 rLsiD~~RrVRe~ah~~~~~l~~~~gK~-lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~e 133 (1843)
+|--.+++++++.|-.++..+...-... -+--....++|.+.-......++.+.|..++...|... +..+...+.+..
T Consensus 616 ~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~G 694 (2102)
T PLN03200 616 QLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI-KENRKVSYAAED 694 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcC
Confidence 3444678899999998888887633322 12344567888888888889999999999999999642 334444446666
Q ss_pred HHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhH
Q 043255 134 VFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSE 213 (1843)
Q Consensus 134 Il~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e 213 (1843)
++..+.+.++. ++ .+++.-++.+|+.++..- |. +..+. . +
T Consensus 695 aV~pL~~LL~~-~d----------------~~v~e~Al~ALanLl~~~----------e~-----------~~ei~-~-~ 734 (2102)
T PLN03200 695 AIKPLIKLAKS-SS----------------IEVAEQAVCALANLLSDP----------EV-----------AAEAL-A-E 734 (2102)
T ss_pred CHHHHHHHHhC-CC----------------hHHHHHHHHHHHHHHcCc----------hH-----------HHHHH-h-c
Confidence 77777766631 11 367778888998888432 10 00010 0 1
Q ss_pred hhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcc--c-ccchhhHHHHHHHcccCCCCCcchH--HHHHHHHHHHh
Q 043255 214 KLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHV--F-NEGNLKIIATAILGAFQEKDPVCHS--SMWDAILLLSK 288 (1843)
Q Consensus 214 ~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~--l-~~~~~k~i~~avl~~l~e~d~~~~~--~lWealL~l~k 288 (1843)
..+. .+=++++.+++.+|+..-..|..++++.|.. + +--+..-.-.+++..|...|..+.. +..+++-.+.+
T Consensus 735 ~~I~---~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 735 DIIL---PLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred CcHH---HHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 1111 2556788999999999999999999998721 1 1000111223344556655554444 37777777666
Q ss_pred c------CCCceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcC
Q 043255 289 R------FPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPK 336 (1843)
Q Consensus 289 ~------~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~ 336 (1843)
+ .|.-|...-....-+-.|.+.|..| .+.++..-...|+.+=.+
T Consensus 812 ~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~----~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 812 TKGGANFSHPPWAVLAEVPSSLEPLVRCLAEG----HPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hcccCCCCCCchhhHHhccCchHHHHHHHHcC----ChHHHHHHHHHHHHHhcc
Confidence 4 2445544333344556666666444 334455555556665444
No 161
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=43.34 E-value=70 Score=33.34 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=55.8
Q ss_pred hcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc-hhhhhhhhhhhh
Q 043255 16 ARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG-RDLAPHLKSLMG 92 (1843)
Q Consensus 16 ~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g-K~lap~Lk~l~g 92 (1843)
.|++...|.+||..+.++++ .-++.+..++|.-.-.. |.+++.. .+|+.|-.++..+++.+. ..++|++..++-
T Consensus 25 ~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L-~sal~~~-~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~ 99 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACL-QSALEIP-ELREEALSCWNCFIKTLDEEDLGPLLDQIFA 99 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH-HHHhCCh-hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 36777899999999999998 33555666666533322 4455544 999999999999999887 888888887543
No 162
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.20 E-value=14 Score=44.14 Aligned_cols=44 Identities=27% Similarity=0.725 Sum_probs=34.5
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
-.|+.|...+.. |-+. +.|+|.|...||..-+-.+ .-.||.|..
T Consensus 275 LkCplc~~Llrn-----p~kT-~cC~~~fc~eci~~al~ds-Df~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN-----PMKT-PCCGHTFCDECIGTALLDS-DFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC-----cccC-ccccchHHHHHHhhhhhhc-cccCCCccc
Confidence 479999998864 2222 3599999999999888866 478999965
No 163
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.34 E-value=24 Score=34.86 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=24.1
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..|-||-+.+.....--|-..|+.|+-...+.|..-=.+ .++..||-|++++
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~y 61 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRY 61 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B-
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCc
Confidence 379999999876444446789999999999999854444 3678999999753
No 164
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.93 E-value=22 Score=39.20 Aligned_cols=101 Identities=20% Similarity=0.365 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhccCCCCceEEEE----eccccEEEEEEEec----CCceEEEEecCCCCCCCcceEeecc-------
Q 043255 1681 SPPLIANELSQIKKANIADENFSLTV----SKSANEVVATYTKD----ETKMDLIIRLPASYPLRPVDVECMR------- 1745 (1843)
Q Consensus 1681 Sp~li~~el~~v~~~~~~~~~~~Vkv----~~~~~EV~a~Y~id----e~~~el~I~lP~~YPL~~v~V~~~~------- 1745 (1843)
+-.|...+++.+++. .-+.|.+.. +.-..||...-.-| ..-+.-.++||.+||++++++....
T Consensus 6 a~~ll~~qlk~L~~~--pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEE--PVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcC--CCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 345667778877753 123333332 11235555443322 2346788999999999998887643
Q ss_pred ----cc--------c-------cCHHHH------HHHHHHHHHHHHhcccc---HHHHHHHHHHhc
Q 043255 1746 ----SL--------G-------ISEVKQ------RKWLMSMMLFVRNQNGA---LAEAIRIWKRNF 1783 (1843)
Q Consensus 1746 ----~v--------g-------vse~k~------r~Wll~~~~~i~~qnGs---i~d~l~~~k~nv 1783 (1843)
+| | ....+| +..++++...++..|.. -.||-..|+.|-
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~ 149 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENP 149 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCH
Confidence 11 1 123344 57889999999888864 588999999884
No 165
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=18 Score=44.23 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=33.6
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
+..-|||||..=- + -.-.+|+|+=..+||.+=+.. ...|=.|...
T Consensus 421 Ed~lCpICyA~pi--~-----Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktT 465 (489)
T KOG4692|consen 421 EDNLCPICYAGPI--N-----AVFAPCSHRSCYGCITQHLMN--CKRCFFCKTT 465 (489)
T ss_pred ccccCcceecccc--h-----hhccCCCCchHHHHHHHHHhc--CCeeeEecce
Confidence 4457999998422 1 123479999999999999885 4689998764
No 166
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=41.10 E-value=36 Score=27.38 Aligned_cols=26 Identities=35% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHH
Q 043255 53 YKRLLLDYSREVRRATHEMMTSLVIT 78 (1843)
Q Consensus 53 Y~rLsiD~~RrVRe~ah~~~~~l~~~ 78 (1843)
+-++..|++.+||+.|-.+++.+++.
T Consensus 5 l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 5 LLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 34677799999999999999998764
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=41.04 E-value=19 Score=47.32 Aligned_cols=27 Identities=41% Similarity=0.875 Sum_probs=22.3
Q ss_pred ccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1810 LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1810 ~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
..|++|+|.-|.+=|.+ .++||+|..+
T Consensus 1157 WlC~~CkH~a~~~EIs~------y~~CPLCHs~ 1183 (1189)
T KOG2041|consen 1157 WLCPRCKHRAHQHEISK------YNCCPLCHSM 1183 (1189)
T ss_pred EEccccccccccccccc------cccCccccCh
Confidence 46999999999987743 5899999875
No 168
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=38.94 E-value=17 Score=47.77 Aligned_cols=48 Identities=33% Similarity=0.796 Sum_probs=35.0
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcC---CCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS---HKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s---~~stCPlCR~ 1841 (1843)
-|++|-..=....+++ ..|..|+..+|..|...|...- +--.||-||.
T Consensus 20 mc~l~~s~G~~~ag~m--~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRL--LACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhccccccccCcc--hhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 5777766544333444 5799999999999999999842 2236998874
No 169
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.60 E-value=6.6e+02 Score=28.97 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=42.7
Q ss_pred cCChhHHHHHHHHHHHHHhcCC-cccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 228 SQSVSIRSATYSVLKSYIKNIP-HVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 228 ~~~p~VR~A~y~LL~tll~~~p-~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
.+++.+-...+.++..+++..| +-+..+-+..+.+.+...+..+|+.+..+.+-++-.+...
T Consensus 113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3466777788889999999887 2344454555666666777778888877776665555443
No 170
>PLN02400 cellulose synthase
Probab=38.02 E-value=17 Score=50.66 Aligned_cols=50 Identities=20% Similarity=0.541 Sum_probs=41.2
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.|-||-+.+..+..--|-+.|..|+-...+.|. +.=+..++..||-|+..
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTr 87 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTR 87 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCc
Confidence 899999998865444477999999999999998 54455578899999975
No 171
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=37.42 E-value=5.5e+02 Score=32.89 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=64.0
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCce-eecCcchhhhH
Q 043255 227 KSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCW-TVLNAQKTILN 305 (1843)
Q Consensus 227 k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W-~~~n~kK~~lp 305 (1843)
+..+..+|......+..++++.|..+-..+++.+-|-++++|+-+++.+..+..+++..+....|+.- +|+ ..++|
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl---~sLI~ 409 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL---SSLIP 409 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH---HHHHH
Confidence 44444588888999999999999766556789999999999999999999999999999988887765 332 35667
Q ss_pred HHHH
Q 043255 306 RFWH 309 (1843)
Q Consensus 306 rL~~ 309 (1843)
||.+
T Consensus 410 ~LL~ 413 (415)
T PF12460_consen 410 RLLK 413 (415)
T ss_pred HHHh
Confidence 7654
No 172
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=37.42 E-value=7.2e+02 Score=34.64 Aligned_cols=267 Identities=14% Similarity=0.188 Sum_probs=136.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhh--hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHH
Q 043255 50 AFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAP--HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDAL 127 (1843)
Q Consensus 50 ~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap--~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~ 127 (1843)
...|.++.-|.+..||.++.+=.+.+.+.+++.... .++.+.+.=-- .=|+.|.+|.-+..++...|..+. +..
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~~~---d~~ 314 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD-DQDSVREAAVESLVSLLDLLDDDD---DVV 314 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCCch---hhh
Confidence 467788889999999999999999999988874432 22222222111 115666666666666667776651 333
Q ss_pred HHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC----cccccCcchhhh
Q 043255 128 LICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGF----ENITAEPKHASK 203 (1843)
Q Consensus 128 ~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~----e~~~~e~~~~sk 203 (1843)
+......+... +|-.+++.+.++.-..-+...+.. +...+.. .+.-+... ..
T Consensus 315 ~~~~~~l~~~~------------------~d~~~~v~~~~~~~~~~L~~~~~~----~~~~~~~~~~~~~l~~~~~--~e 370 (759)
T KOG0211|consen 315 KSLTESLVQAV------------------EDGSWRVSYMVADKFSELSSAVGP----SATRTQLVPPVSNLLKDEE--WE 370 (759)
T ss_pred hhhhHHHHHHh------------------cChhHHHHHHHhhhhhhHHHHhcc----ccCcccchhhHHHHhcchh--hh
Confidence 33333333332 222333333333333333322211 0000000 00000000 00
Q ss_pred HHHHHhh---hhHhhhc---------cc--hhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccC
Q 043255 204 ARAIAVS---FSEKLFS---------DH--KYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQ 269 (1843)
Q Consensus 204 ~~~~~i~---~~e~lf~---------~~--k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~ 269 (1843)
.|.++.. ....+++ ++ ....-+.-.+...||.+.-..+.-+.--.| .+..+..+-+..++.+.
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLK 447 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcc
Confidence 0000000 0000000 00 112333445567777765554443332222 23334556677788888
Q ss_pred CCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCCh-HHHHHHH
Q 043255 270 EKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAAD-KFFQDFF 348 (1843)
Q Consensus 270 e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~-~f~~~ff 348 (1843)
+-+|.+...+.+-+ ......+++=+........+|-+-.+-... .|-.-.-++..||......+ .|+.+.+
T Consensus 448 de~~~V~lnli~~l-s~~~~v~~v~g~~~~s~slLp~i~el~~d~-------~wRvr~ail~~ip~la~q~~~~~~~~~~ 519 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKL-SLLEEVNDVIGISTVSNSLLPAIVELAEDL-------LWRVRLAILEYIPQLALQLGVEFFDEKL 519 (759)
T ss_pred hhhHHHHHhhHHHH-HHHHhccCcccchhhhhhhhhhhhhhccch-------hHHHHHHHHHHHHHHHHhhhhHHhhHHH
Confidence 88888888777655 333444555555455666777766665543 78889999999998765532 4666665
Q ss_pred HHHHhhh
Q 043255 349 NSLWAGR 355 (1843)
Q Consensus 349 ~al~~Gl 355 (1843)
..+..++
T Consensus 520 ~~l~~~~ 526 (759)
T KOG0211|consen 520 AELLRTW 526 (759)
T ss_pred HHHHHhh
Confidence 5555543
No 173
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.90 E-value=9.1e+02 Score=34.95 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=123.4
Q ss_pred hhhHHHHHHHHHHHHhccC---cCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH--hchhhhhhhhhhhhhH
Q 043255 20 PITKLKALSSLSALLKEKS---GKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT--VGRDLAPHLKSLMGPW 94 (1843)
Q Consensus 20 ~tTK~KALqeL~~lv~~~~---~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~--~gK~lap~Lk~l~g~W 94 (1843)
++-+.|.+..|.-++.-.+ .+.+.++. .+.+..-...+..|+.-+-.++..++.. +..-...++..++-.-
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~----~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L 702 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF----TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSL 702 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH----HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHH
Confidence 4555566666554443322 22343333 4445555566899999999999999976 3345556888899999
Q ss_pred hhcccCCcHHHHHHHHHHHHhhCCChh--------h-HHHHHHHHHHHHHHHHHHH----hcc-C--ccccCCCCCChhh
Q 043255 95 WFSQFDSNSEVSQAAKRSLQAAFPAQE--------K-RLDALLICATEVFIYLEEN----LKL-T--PQNLSDKAIALDE 158 (1843)
Q Consensus 95 l~~~~D~~~~VA~aA~~sf~~~Fp~~e--------K-r~~a~~~cq~eIl~~~~d~----Lk~-T--p~TLSDks~~~EE 158 (1843)
+-+.-+...++...+..++...+-.-. | ..+++ .|..+.=++...+ |.. + .-.+-+.+.++++
T Consensus 703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI-L~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~ 781 (1176)
T KOG1248|consen 703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI-LSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASA 781 (1176)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHH
Confidence 999999999999999999987664211 0 01111 1111000000000 000 1 0111111222222
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhh
Q 043255 159 LEEMH------------QQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFL 226 (1843)
Q Consensus 159 ~EaKY------------~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~ 226 (1843)
+-..| .|+++++|.++..++..... .++ ++ ..+.+++. .=.|+
T Consensus 782 ~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~---------~ld-~~------------~l~~li~~---V~~~L 836 (1176)
T KOG1248|consen 782 ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN---------ILD-DE------------TLEKLISM---VCLYL 836 (1176)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc---------ccc-HH------------HHHHHHHH---HHHHH
Confidence 22222 47777778888888866411 111 11 23345542 44568
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHH
Q 043255 227 KSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAI 264 (1843)
Q Consensus 227 k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~av 264 (1843)
.++++.||+|+-..+..++...|+..-..+.+.+-+.+
T Consensus 837 ~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 837 ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 89999999999999999999998765444444444443
No 174
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.02 E-value=55 Score=44.31 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=97.8
Q ss_pred hhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhh
Q 043255 224 DFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTI 303 (1843)
Q Consensus 224 ~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~ 303 (1843)
++++|.+|.||+-+--++..++.+.|+++ ..+-++.-+.|.|++.||...-.--++.+.+..|+.-.+. |..
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f---r~l 220 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKVPDLV-----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF---RDL 220 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCchHH-----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH---HHH
Confidence 34667899999999999999999999865 2355566688999999999998888888999889876553 337
Q ss_pred hHHHHHHHHccCCCCCcc--ch-hhHHHHhhhCCc---CcCC-ChHHHHHHHHHHHhhhcCCCCC-cchHHHHHHHHHHH
Q 043255 304 LNRFWHFLKNGCFGSQQV--SY-PALVLFLDVVPP---KAVA-ADKFFQDFFNSLWAGRNEPHSS-NSDHKAFFRAFKEC 375 (1843)
Q Consensus 304 lprL~~~Lr~G~~Gsa~~--~y-p~LlplLs~iP~---~vl~-~~~f~~~ff~al~~Gl~~r~~s-~s~~~a~~say~Ec 375 (1843)
.|.|...||.=..|.-+. -| .-=.|||+.-=- .+++ .+.-+++.|..+.+-+..+-++ +.-..|+ .+||
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI---LYE~ 297 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI---LYEC 297 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH---HHHH
Confidence 788888887543332221 12 122344443211 1233 2346888888888776655443 3333343 5899
Q ss_pred HHHHHh
Q 043255 376 FLWGLL 381 (1843)
Q Consensus 376 ~~~~l~ 381 (1843)
++=+..
T Consensus 298 V~TI~~ 303 (866)
T KOG1062|consen 298 VRTIMD 303 (866)
T ss_pred HHHHHh
Confidence 987753
No 175
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=35.94 E-value=82 Score=40.53 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=55.9
Q ss_pred CChhhHHHHHHHHHHHHhccCcCcc----cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc-hhhhhhhhhhhh
Q 043255 18 KDPITKLKALSSLSALLKEKSGKDI----APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG-RDLAPHLKSLMG 92 (1843)
Q Consensus 18 KD~tTK~KALqeL~~lv~~~~~~~l----~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g-K~lap~Lk~l~g 92 (1843)
-|.-+=.-++..+..+|+.-+.|++ ..+.|+-.+.|.- .+--||..+--++-.++.++| ++|.|||.++=+
T Consensus 418 ~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 418 ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 4444555567788888888777773 5577777777753 567899999999999999999 999999998754
Q ss_pred h
Q 043255 93 P 93 (1843)
Q Consensus 93 ~ 93 (1843)
+
T Consensus 494 s 494 (516)
T KOG2956|consen 494 S 494 (516)
T ss_pred H
Confidence 3
No 176
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=17 Score=45.98 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=33.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL 1838 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl 1838 (1843)
--.||+|...+.-..+ =-.+.|. |||.|-..|...|... +.+|..
T Consensus 306 wr~CpkC~~~ie~~~G-Cnhm~Cr-C~~~fcy~C~~~~~~~--~~~~~~ 350 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEG-CNHMTCR-CGHQFCYMCGGDWKTH--NGECYE 350 (384)
T ss_pred cCcCcccceeeeecCC-cceEEee-ccccchhhcCcchhhC--CccccC
Confidence 3489999888764433 2346888 9999999999999873 455643
No 177
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.45 E-value=76 Score=42.61 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=65.4
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcch
Q 043255 222 FLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301 (1843)
Q Consensus 222 fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK 301 (1843)
...++.|..|.||+-+--++.-++-+.|+.+-+ -=|.+-..|+++|||++++....+--|.++.|+.+-.
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~----- 218 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ----- 218 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----
Confidence 556788899999999998888888888876532 2344558899999999999999999999999998854
Q ss_pred hhhHHHHHHHHcc
Q 043255 302 TILNRFWHFLKNG 314 (1843)
Q Consensus 302 ~~lprL~~~Lr~G 314 (1843)
+-|-|+.+|-..
T Consensus 219 -LAP~ffkllttS 230 (877)
T KOG1059|consen 219 -LAPLFYKLLVTS 230 (877)
T ss_pred -ccHHHHHHHhcc
Confidence 556666666544
No 178
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=24 Score=43.02 Aligned_cols=44 Identities=20% Similarity=0.572 Sum_probs=34.7
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
.+.||+|.-.... | -.|.+-|-.|.-.|+.+...++ .+||+=..
T Consensus 300 ~~~CpvClk~r~N-----p-tvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~ 343 (357)
T KOG0826|consen 300 REVCPVCLKKRQN-----P-TVLEVSGYVFCYPCIFSYVVNY--GHCPVTGY 343 (357)
T ss_pred cccChhHHhccCC-----C-ceEEecceEEeHHHHHHHHHhc--CCCCccCC
Confidence 4589999987653 2 2577789999999999999964 69997543
No 179
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=32.98 E-value=15 Score=30.97 Aligned_cols=29 Identities=24% Similarity=0.744 Sum_probs=20.7
Q ss_pred ccccccccccccCcccc----cccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLP----RLACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP----~~~C~~C~h~FH 1820 (1843)
+||-|-..+.-.+..++ ..+|+.|++.|.
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 69999988775443333 358889998875
No 180
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=32.91 E-value=33 Score=37.15 Aligned_cols=51 Identities=27% Similarity=0.696 Sum_probs=34.6
Q ss_pred CCcccccccccccccCccc-ccccccccCCccCHhhHHHHHhc-CCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSL-PRLACKTCKHKFHSACLYKWFST-SHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~l-P~~~C~~C~h~FH~~CL~kWf~~-s~~stCPlCR~~~ 1843 (1843)
..=||-||.+.-.. .+-| |+ .| ||-.....|-..=++. +-...||.|+..|
T Consensus 79 ~lYeCnIC~etS~e-e~FLKPn-eC--CgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAE-ERFLKPN-EC--CGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccch-hhcCCcc-cc--cchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 34599999998653 2333 43 34 8888888876655553 3457899999865
No 181
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.74 E-value=27 Score=46.61 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=37.2
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhc----CCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST----SHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~----s~~stCPlCR~ 1841 (1843)
....|.||.-.+...+...+...-.+|.|.|...||.+|... -.+.+||+|.+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 345788887777754445544333389999999999999872 22357899965
No 182
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.54 E-value=1.2e+02 Score=30.46 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=61.1
Q ss_pred cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 43 APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 43 ~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
+.+|.++..+|.+ .++..||+..-.+...++...|..+..--|.+++..=.+..|.+.++...|-+.++
T Consensus 16 ~~fL~Pf~~i~~~---~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSN---NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 5588888888833 38899999999999999999999999999999999999999999999998887765
No 183
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.52 E-value=2.6e+02 Score=40.96 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=92.4
Q ss_pred CHHHHHHHHhhhcCChh--hHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHh
Q 043255 5 DSEVAQHLKRLARKDPI--TKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLL---LDYSREVRRATHEMMTSLVITV 79 (1843)
Q Consensus 5 D~ev~v~lKkL~KKD~t--TK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLs---iD~~RrVRe~ah~~~~~l~~~~ 79 (1843)
+|+++=-|=+|.+..+| .|.=|==.|.++.++. ++.++ |+..++-|||- .||+.+||.+--.++..|+.--
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a-~~kl~---p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA-GEKLE---PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS 1029 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH-HHhhh---hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh
Confidence 68888888889888888 6666666677766554 55555 55567777765 5999999999999999999999
Q ss_pred chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC
Q 043255 80 GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA 119 (1843)
Q Consensus 80 gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~ 119 (1843)
++-+-.|+..|+-=-+.++-+.-=-|..++.-|+.+...+
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998888989999999888775
No 184
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.85 E-value=25 Score=32.21 Aligned_cols=38 Identities=26% Similarity=0.695 Sum_probs=30.0
Q ss_pred Ccccc--ccccccccc-CcccccccccccCCccCHhhHHHH
Q 043255 1790 VEECP--ICYSVIHTA-NHSLPRLACKTCKHKFHSACLYKW 1827 (1843)
Q Consensus 1790 ~eeCa--ICys~~~~~-d~~lP~~~C~~C~h~FH~~CL~kW 1827 (1843)
..-|| =|-..+... +..-+.+.|..|++.|...|...|
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 44788 887777754 234577899999999999999888
No 185
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.14 E-value=3.9e+02 Score=37.78 Aligned_cols=182 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhh
Q 043255 5 DSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLA 84 (1843)
Q Consensus 5 D~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~la 84 (1843)
+.+....++.|.-+|+--|.-|.+.|..+ +....++ ++..|.++.||..+...++.+-..-...
T Consensus 713 ~~~~~~l~~~L~D~d~~VR~~Av~aL~~~------~~~~~l~--------~~l~D~~~~VR~~aa~aL~~~~~~~~~~-- 776 (897)
T PRK13800 713 AGDAALFAAALGDPDHRVRIEAVRALVSV------DDVESVA--------GAATDENREVRIAVAKGLATLGAGGAPA-- 776 (897)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHhcc------cCcHHHH--------HHhcCCCHHHHHHHHHHHHHhccccchh--
Q ss_pred hhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHH
Q 043255 85 PHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQ 164 (1843)
Q Consensus 85 p~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~ 164 (1843)
++.-.....|+++.|..+|..++...=.++ +....+...| .+...
T Consensus 777 ------~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~------------~~~~~l~~aL-----------------~d~d~ 821 (897)
T PRK13800 777 ------GDAVRALTGDPDPLVRAAALAALAELGCPP------------DDVAAATAAL-----------------RASAW 821 (897)
T ss_pred ------HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc------------hhHHHHHHHh-----------------cCCCh
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHH
Q 043255 165 QVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSY 244 (1843)
Q Consensus 165 RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tl 244 (1843)
.|-.+++.+|+.+=..- ....|... ++.+++.||++.-..|..+
T Consensus 822 ~VR~~Aa~aL~~l~~~~-----------------------------a~~~L~~~-------L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAADV-----------------------------AVPALVEA-------LTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhccccc-----------------------------hHHHHHHH-------hcCCCHHHHHHHHHHHhcc
Q ss_pred HhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHH
Q 043255 245 IKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAI 283 (1843)
Q Consensus 245 l~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWeal 283 (1843)
..-....+++..+++|.++.|.....++|
T Consensus 866 ----------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 866 ----------PGDPAARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred ----------CCCHHHHHHHHHHHhCCCHHHHHHHHHHH
No 186
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.12 E-value=27 Score=31.94 Aligned_cols=28 Identities=21% Similarity=0.668 Sum_probs=20.0
Q ss_pred cccccccCCccCHhhHHHHHhcCCCCCCCCC
Q 043255 1809 RLACKTCKHKFHSACLYKWFSTSHKSSCPLC 1839 (1843)
Q Consensus 1809 ~~~C~~C~h~FH~~CL~kWf~~s~~stCPlC 1839 (1843)
--+|..|||.|...=-.+= .+...||.|
T Consensus 28 ~W~C~~Cgh~w~~~v~~R~---~~~~~CP~C 55 (55)
T PF14311_consen 28 WWKCPKCGHEWKASVNDRT---RRGKGCPYC 55 (55)
T ss_pred EEECCCCCCeeEccHhhhc---cCCCCCCCC
Confidence 3579999998887643332 356789999
No 187
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=31.00 E-value=12 Score=49.65 Aligned_cols=47 Identities=34% Similarity=0.793 Sum_probs=36.2
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCC-CCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSH-KSSCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~-~stCPlCR~~ 1842 (1843)
-.-+|+||...++.. .-.+|.|.|-..|+-.=|...+ ...||+|++.
T Consensus 20 k~lEc~ic~~~~~~p-------~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-------SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hhccCCceeEEeecc-------chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 356999999999842 2237999999999988777543 5689999863
No 188
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=30.51 E-value=16 Score=43.54 Aligned_cols=24 Identities=46% Similarity=0.868 Sum_probs=20.1
Q ss_pred ccccccccccccCcccccccccccCCccC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFH 1820 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH 1820 (1843)
.|+||+++|.. +...|++|+-+|-
T Consensus 275 VCSVCLSVfC~-----~~PiC~~C~s~F~ 298 (314)
T KOG2487|consen 275 VCSVCLSVFCR-----FVPICKTCKSKFS 298 (314)
T ss_pred ehHHHHHHhhC-----CCCccchhhhhcc
Confidence 79999999984 2348999999996
No 189
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.27 E-value=5.5e+02 Score=34.29 Aligned_cols=101 Identities=20% Similarity=0.127 Sum_probs=66.2
Q ss_pred HhhhcCChhhHHHHHHHHHHHHh----ccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 13 KRLARKDPITKLKALSSLSALLK----EKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~----~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
|.|+-|==--|.-|-.|+-.+++ +.+.+.+..++. .+-.+.+..+++.-|...-.-++...-..|..-++|++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~---~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVIS---ELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH---HHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 44443322223334456655554 333344554443 34445566667777775555555555677899999999
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
++++|-+....|+|..|---|.+++-..
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNi 111 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNI 111 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHH
Confidence 9999999999999999999999888643
No 190
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.17 E-value=1.5e+02 Score=30.39 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcch
Q 043255 222 FLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301 (1843)
Q Consensus 222 fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK 301 (1843)
.++.+..+.+.||.-.-.+|+.++.+.. ....+.+.+-..++..+.+.|+=+....-.++..+...+|+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------- 76 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------- 76 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---------
Confidence 4556778889999999999999999876 11233567777777999999999999999999999988775
Q ss_pred hhhHHHHHHHHcc
Q 043255 302 TILNRFWHFLKNG 314 (1843)
Q Consensus 302 ~~lprL~~~Lr~G 314 (1843)
.++|.|...-.++
T Consensus 77 ~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 EVLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHHhCc
Confidence 3666666655443
No 191
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.93 E-value=1e+02 Score=34.73 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=43.8
Q ss_pred HhHHhcCHHHHHHHHHHHHh--ccCCCCceEEEE-eccccEEEEEEEecCC-----ceEEEEecCCCCCCCcceEeeccc
Q 043255 1675 FTRVWCSPPLIANELSQIKK--ANIADENFSLTV-SKSANEVVATYTKDET-----KMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1675 ~t~~~~Sp~li~~el~~v~~--~~~~~~~~~Vkv-~~~~~EV~a~Y~ide~-----~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+-+|+..++.+.+.... ...-.-++.... ....-|+..+.+-||. ++...+++|++||..+++|.|...
T Consensus 21 ~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 35678888888777664421 110000111100 1111256666666663 467889999999999999999764
Q ss_pred c
Q 043255 1747 L 1747 (1843)
Q Consensus 1747 v 1747 (1843)
|
T Consensus 101 V 101 (184)
T KOG0420|consen 101 V 101 (184)
T ss_pred c
Confidence 4
No 192
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.53 E-value=5.9e+02 Score=34.83 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=123.4
Q ss_pred hhHHHHHHhhhcCCCH-HHHHHHHHHHHHHH--HHhchhhhhhhhhhh-hhHhhcccCCcHHHHHHHHHHHHhhCCChh-
Q 043255 47 PQWAFEYKRLLLDYSR-EVRRATHEMMTSLV--ITVGRDLAPHLKSLM-GPWWFSQFDSNSEVSQAAKRSLQAAFPAQE- 121 (1843)
Q Consensus 47 p~W~~lY~rLsiD~~R-rVRe~ah~~~~~l~--~~~gK~lap~Lk~l~-g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e- 121 (1843)
.-..+-+...+|...| -|-.-.+.+++.+. +|+.+++..-|-.+. |.-|-|.-=+...|.+.|..-|-.+||-..
T Consensus 128 ~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp 207 (1005)
T KOG1949|consen 128 NDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDP 207 (1005)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCC
Confidence 3456777888888777 45555555666666 357788877666655 446777777999999999999999999421
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcch
Q 043255 122 -KRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKH 200 (1843)
Q Consensus 122 -Kr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~ 200 (1843)
--.+..----+.=+.|+.+-| +| -|--|-+.+...+.+.+... .+.+..
T Consensus 208 d~~~e~mD~i~~kQf~~l~~LL-------~d----------~~p~VRS~a~~gv~k~~s~f---------We~iP~---- 257 (1005)
T KOG1949|consen 208 DLHAEEMDSIIQKQFEELYSLL-------ED----------PYPMVRSTAILGVCKITSKF---------WEMIPP---- 257 (1005)
T ss_pred CccHHHHHHHHHHHHHHHHHHh-------cC----------CCchHHHHHHHHHHHHHHHH---------HHHcCH----
Confidence 001111101111112222222 22 23334555666666655543 111110
Q ss_pred hhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHH
Q 043255 201 ASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMW 280 (1843)
Q Consensus 201 ~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lW 280 (1843)
+ ...+++. |-+=+.++-....||-|+|.-|.-++.+ |... ..++++-|++=-++.|+-..|..++.
T Consensus 258 ------~---i~~~ll~--kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh--~~le~~Lpal~~~l~D~se~VRvA~v 323 (1005)
T KOG1949|consen 258 ------T---ILIDLLK--KITDELAFDTSSDVRCSVFKGLPMILDN-PLSH--PLLEQLLPALRYSLHDNSEKVRVAFV 323 (1005)
T ss_pred ------H---HHHHHHH--HHHHHhhhccchheehhHhcCcHHHHcC-ccch--hHHHHHHHhcchhhhccchhHHHHHH
Confidence 0 1112221 2222334445679999999999888875 4332 23577777555778888889999999
Q ss_pred HHHHHHHhc-CCCceeecC
Q 043255 281 DAILLLSKR-FPDCWTVLN 298 (1843)
Q Consensus 281 ealL~l~k~-~Pd~W~~~n 298 (1843)
+.++.+-.. .-+.|..+.
T Consensus 324 d~ll~ik~vra~~f~~I~~ 342 (1005)
T KOG1949|consen 324 DMLLKIKAVRAAKFWKICP 342 (1005)
T ss_pred HHHHHHHhhhhhhhhcccc
Confidence 998887544 356886543
No 193
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.49 E-value=29 Score=28.71 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=5.3
Q ss_pred cccccccccc
Q 043255 1792 ECPICYSVIH 1801 (1843)
Q Consensus 1792 eCaICys~~~ 1801 (1843)
.|.+|-.++.
T Consensus 3 ~C~~CGy~y~ 12 (33)
T cd00350 3 VCPVCGYIYD 12 (33)
T ss_pred ECCCCCCEEC
Confidence 3555555544
No 194
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=29.42 E-value=1.7e+02 Score=34.26 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHhccCcC-cccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc
Q 043255 11 HLKRLARKDPITKLKALSSLSALLKEKSGK-DIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG 80 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~~~~~~-~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g 80 (1843)
.-|+|+=-|..||-|||+.|..++..+... +-..++.-|-.+|=-+=.-+-+.|-+....-++.|+....
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~ 75 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFP 75 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhc
Confidence 458889999999999999999999887543 3345888999999887775555665555555556665544
No 195
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=26 Score=44.27 Aligned_cols=39 Identities=23% Similarity=0.530 Sum_probs=27.8
Q ss_pred CCccccccc-ccccccCcccccccccccCCccCHhhHHHHHhcC
Q 043255 1789 GVEECPICY-SVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS 1831 (1843)
Q Consensus 1789 g~eeCaICy-s~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s 1831 (1843)
..++|+||+ +.....++.. -..|+|.|...|..+-++..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~----~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS----VLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHH----HhcccchhhhHHhHHHhhhh
Confidence 357999999 5544322211 13699999999999999954
No 196
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=46 Score=42.88 Aligned_cols=38 Identities=34% Similarity=0.747 Sum_probs=29.4
Q ss_pred ccccccccccccCcccccccccc--cCCccCHhhHHHHHhc
Q 043255 1792 ECPICYSVIHTANHSLPRLACKT--CKHKFHSACLYKWFST 1830 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~--C~h~FH~~CL~kWf~~ 1830 (1843)
+||.|+-.+.. +..=..+.|.. |+|.|+-.|+..|-..
T Consensus 228 ~CP~c~~~iek-~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 228 ECPKCKVPIEK-DGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCCCcccchhc-cCCccccccccCCcCCeeceeeecccccc
Confidence 59999999984 43323456776 9999999999888764
No 197
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.57 E-value=1.5e+03 Score=30.45 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=98.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhchh-hhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHH
Q 043255 57 LLDYSREVRRATHEMMTSLVITVGRD-LAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVF 135 (1843)
Q Consensus 57 siD~~RrVRe~ah~~~~~l~~~~gK~-lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl 135 (1843)
--|++..||.+++.+++.++..++-. -.--.+..++.-..-..-+++..+..|..=++.+-+.. -...+
T Consensus 217 LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~----------g~~~l 286 (675)
T KOG0212|consen 217 LSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP----------GRDLL 286 (675)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC----------Ccchh
Confidence 34999999999999999999877621 11122333333333334455555555543333322221 11223
Q ss_pred HHHHHHhccCccccCCCCCChhhH-HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHh
Q 043255 136 IYLEENLKLTPQNLSDKAIALDEL-EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEK 214 (1843)
Q Consensus 136 ~~~~d~Lk~Tp~TLSDks~~~EE~-EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~ 214 (1843)
-|+...+..--+-+||. |++ ---|.+++...|+.+.. .+....+- .+.+
T Consensus 287 ~~~s~il~~iLpc~s~~----e~~~i~~~a~~~n~~l~~l~s--------------~~~~~~~i------------d~~~ 336 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDT----EEMSIKEYAQMVNGLLLKLVS--------------SERLKEEI------------DYGS 336 (675)
T ss_pred hhhhhhhhhcccCCCCC----ccccHHHHHHHHHHHHHHHHh--------------hhhhcccc------------chHH
Confidence 33332221111233332 111 11144555444433321 11100011 2344
Q ss_pred hhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHH
Q 043255 215 LFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDA 282 (1843)
Q Consensus 215 lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWea 282 (1843)
+++- +-++++++.-.-|-++..-+..+..+.|..+-- +...+=+++++.|.++.-.+..-..+.
T Consensus 337 ii~v---l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 337 IIEV---LTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred HHHH---HHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 5442 667888999999999999999999999976643 456677888888887765544443333
No 198
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=28.18 E-value=25 Score=38.36 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=20.5
Q ss_pred cccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1805 HSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1805 ~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.++...+|..|||.||-. +.-||.|+++
T Consensus 25 ~kl~g~kC~~CG~v~~PP----------r~~Cp~C~~~ 52 (140)
T COG1545 25 GKLLGTKCKKCGRVYFPP----------RAYCPKCGSE 52 (140)
T ss_pred CcEEEEEcCCCCeEEcCC----------cccCCCCCCC
Confidence 455667888888888863 5688888764
No 199
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=1.1e+02 Score=32.83 Aligned_cols=61 Identities=25% Similarity=0.510 Sum_probs=39.5
Q ss_pred ceEEEEecCCCCCCCcceEeecc-----------cc--------c-------cCHHHH------HHHHHHHHHHHHhcc-
Q 043255 1723 KMDLIIRLPASYPLRPVDVECMR-----------SL--------G-------ISEVKQ------RKWLMSMMLFVRNQN- 1769 (1843)
Q Consensus 1723 ~~el~I~lP~~YPL~~v~V~~~~-----------~v--------g-------vse~k~------r~Wll~~~~~i~~qn- 1769 (1843)
...-.+++|..|||++++..... +| | .++.+| .+.+++....+.-.|
T Consensus 53 vfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 53 VFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPND 132 (165)
T ss_pred ccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCc
Confidence 35678899999999997654321 11 1 223444 355666555555544
Q ss_pred --ccHHHHHHHHHHhc
Q 043255 1770 --GALAEAIRIWKRNF 1783 (1843)
Q Consensus 1770 --Gsi~d~l~~~k~nv 1783 (1843)
|.-+|+-.+|+.+-
T Consensus 133 ESgANvdA~~mWRe~R 148 (165)
T KOG0426|consen 133 ESGANVDACKMWREDR 148 (165)
T ss_pred ccCcccHHHHHHHHhH
Confidence 67789999999764
No 200
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.93 E-value=21 Score=43.41 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=31.6
Q ss_pred CcccccccccccccCcccccccccccCCccC--------HhhHHHHH---hcCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFH--------SACLYKWF---STSHKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH--------~~CL~kWf---~~s~~stCPlCR~ 1841 (1843)
.|-||+|-+-++.-...+ ..|..||-.|. ..|...== ....+..||.||-
T Consensus 15 ~ElCPVCGDkVSGYHYGL--LTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGL--LTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred ccccccccCccccceeee--eehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 457999999887433334 78999987774 34543210 0112358999994
No 201
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.70 E-value=32 Score=36.15 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=4.8
Q ss_pred cccccCCccC
Q 043255 1811 ACKTCKHKFH 1820 (1843)
Q Consensus 1811 ~C~~C~h~FH 1820 (1843)
.|++||.+|-
T Consensus 11 ~Cp~CG~kFY 20 (108)
T PF09538_consen 11 TCPSCGAKFY 20 (108)
T ss_pred cCCCCcchhc
Confidence 3555555443
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.62 E-value=45 Score=41.06 Aligned_cols=49 Identities=27% Similarity=0.680 Sum_probs=34.7
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
....|+||++.....+.. -..| +|++..+-.|+..=.. +..+||.||++
T Consensus 248 v~~s~p~~~~~~~~~d~~--~lP~-~~~~~~~l~~~~t~~~--~~~~~~~~rk~ 296 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSN--FLPC-PCGFRLCLFCHKTISD--GDGRCPGCRKP 296 (327)
T ss_pred cCCCCCCCCCcccccccc--cccc-cccccchhhhhhcccc--cCCCCCccCCc
Confidence 457999999988654422 2334 5898877777766544 35699999975
No 203
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=2.1e+02 Score=30.93 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=39.2
Q ss_pred HHHHHHHHHhccCCCCceEEEEeccccEEEEEEE------ecCCceEEEEecCCCCCCCcceEeecccc
Q 043255 1685 IANELSQIKKANIADENFSLTVSKSANEVVATYT------KDETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~------ide~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
.+.||.+.|.. ....|.++|..+-..-++..+ -...+..+.++||+.||++.++|......
T Consensus 20 LqKEl~e~q~~--pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~ 86 (161)
T KOG0427|consen 20 LQKELSEWQNN--PPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPA 86 (161)
T ss_pred HHHHHHHHhcC--CCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCC
Confidence 46677777642 345678777655333222211 12345689999999999999999775443
No 204
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=26.32 E-value=32 Score=28.08 Aligned_cols=36 Identities=25% Similarity=0.670 Sum_probs=23.6
Q ss_pred cccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1793 CPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1793 CaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|+.|-..+...+..+ ..=++.||..|+ .|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~-----~~~~~~~H~~Cf----------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVL-----RALGKVWHPECF----------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEE-----EeCCccccccCC----------CCcccCCcC
Confidence 778888776432221 123678999987 788887764
No 205
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=25.93 E-value=8e+02 Score=32.22 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcCChh-hHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhc-------C-CCHHHHHHHHHHHHHHHH
Q 043255 7 EVAQHLKRLARKDPI-TKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLL-------D-YSREVRRATHEMMTSLVI 77 (1843)
Q Consensus 7 ev~v~lKkL~KKD~t-TK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsi-------D-~~RrVRe~ah~~~~~l~~ 77 (1843)
.++..++++.---.. -|.-||.+|..+..+. -.-.|.+.|..+-+ | .+...|.+|-.++..++.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-------sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEG-------SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 455566666544233 4566889988877643 33579999998322 4 688899999999999998
Q ss_pred HhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 78 TVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 78 ~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
.=.+++--+-.--+---+-+..|++..|.+.|-+...
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~ 396 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCL 396 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 8888888777777777888999999999888888743
No 206
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=25.76 E-value=3e+02 Score=33.93 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=43.3
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCCceEEEEeccccEEEEEEEecCCceEEEEecCCCCCCCcceEeeccccccC
Q 043255 1677 RVWCSPPLIANELSQIKKANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGIS 1750 (1843)
Q Consensus 1677 ~~~~Sp~li~~el~~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~ide~~~el~I~lP~~YPL~~v~V~~~~~vgvs 1750 (1843)
..|+|-++ .||++|.- +....|+.+.+-..|..+...+...-.+.|++|.+||.+++.+.....+.+.
T Consensus 98 ~~~ys~ll--~EIe~IGW----~kl~~i~~d~~ls~i~l~~~D~~R~H~l~l~l~~~yp~~~p~~~~~~P~~~~ 165 (291)
T PF09765_consen 98 PQYYSNLL--KEIEAIGW----DKLVQIQFDDDLSTIKLKIFDSSRQHYLELKLPSNYPFEPPSCSLDLPIPFS 165 (291)
T ss_dssp -GGC-CHH--HHHHHHHC----GCCEEEEE-CCCSEEEEEEETTCEEEEEEEETTTTTTTSEEEECS-TTS-HH
T ss_pred cHHHHHHH--HHHHHhcc----ccceEEecCCCccEEEEEEEcCCceEEEEEEECCCCCCCCceeeCCCCcchh
Confidence 34554333 57777752 2344555577777777776655544578999999999999988777766664
No 207
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=25.51 E-value=22 Score=35.97 Aligned_cols=27 Identities=37% Similarity=0.880 Sum_probs=19.6
Q ss_pred cccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1811 ACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1811 ~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+|..||-.|.+.=|.+ -|.||-|.+.|
T Consensus 60 ~CkkCGfef~~~~ik~------pSRCP~CKSE~ 86 (97)
T COG3357 60 RCKKCGFEFRDDKIKK------PSRCPKCKSEW 86 (97)
T ss_pred hhcccCccccccccCC------cccCCcchhhc
Confidence 6888998887743321 47899998765
No 208
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=24.95 E-value=2.3e+02 Score=35.24 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCc---ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh
Q 043255 7 EVAQHLKRLARKDPITKLKALSSLSALLKEKSGKD---IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV 79 (1843)
Q Consensus 7 ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~---l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~ 79 (1843)
.-++.-++|+=-|..||-+||+-|..|+.++...+ =..++.-|-.+|=-+=+-.-+.+-|....-++.|+...
T Consensus 8 ~ev~f~qkLA~ne~~tRdrAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f 83 (378)
T KOG3911|consen 8 AEVQFAQKLACNERKTRDRALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIF 83 (378)
T ss_pred cchHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHh
Confidence 33466799999999999999999999998765422 25589999999888777777777666555555555443
No 209
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=24.45 E-value=5.7e+02 Score=28.61 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHH-HHHhhhcCCCHHHHHHHHHHHHHHHHHh------ch
Q 043255 9 AQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAF-EYKRLLLDYSREVRRATHEMMTSLVITV------GR 81 (1843)
Q Consensus 9 ~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~-lY~rLsiD~~RrVRe~ah~~~~~l~~~~------gK 81 (1843)
..+.+-|..|++-.|-+|+.=+...|++.+.+.+..--..|.+ +++.|--+..+.+++.+-.++..|...+ -|
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R 107 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR 107 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 3567778899999999999999999988655665333456755 5556666888999999999999999755 24
Q ss_pred hh-hhhhhhhhhhHhhcccCCcHHHHHHHHHHHH---hhCCC
Q 043255 82 DL-APHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ---AAFPA 119 (1843)
Q Consensus 82 ~l-ap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~---~~Fp~ 119 (1843)
++ .|+|++++++-+.-.-| ..+...|.+++. ..||+
T Consensus 108 ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 108 EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 54 59999999998876654 333334444443 45554
No 210
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=2.1e+03 Score=30.24 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=117.9
Q ss_pred cCCCHHHHHHHHHHHHHHHH-HhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHH
Q 043255 58 LDYSREVRRATHEMMTSLVI-TVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA-QEKRLDALLICATEVF 135 (1843)
Q Consensus 58 iD~~RrVRe~ah~~~~~l~~-~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~-~eKr~~a~~~cq~eIl 135 (1843)
-.+|+|=|+++--.+|.++. ....++-|+....+|.-+..++|+.=-|-++|--+|-+.+.. ++++... .+++.-+
T Consensus 374 ~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~-~~l~~~l- 451 (859)
T KOG1241|consen 374 QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQ-ELLQSKL- 451 (859)
T ss_pred CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccH-hhhhHHH-
Confidence 37899999999999999995 445778888999999999999998777766665555544322 0111100 0111110
Q ss_pred HHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhh
Q 043255 136 IYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKL 215 (1843)
Q Consensus 136 ~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~l 215 (1843)
.-+. +.|.|+ -||.+.+--++-.|.+.....-. ++-+++.. .+.|+.+
T Consensus 452 ~~l~-------~gL~De-----------Prva~N~CWAf~~Laea~~eA~~-----s~~qt~~~---------t~~y~~i 499 (859)
T KOG1241|consen 452 SALL-------EGLNDE-----------PRVASNVCWAFISLAEAAYEAAV-----SNGQTDPA---------TPFYEAI 499 (859)
T ss_pred HHHH-------HHhhhC-----------chHHHHHHHHHHHHHHHHHHhcc-----CCCCCCcc---------chhHHHH
Confidence 0000 111111 27888888888887766532111 11111111 0134444
Q ss_pred hccchhHHh---hhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHc---------ccCCCCCcchHHHHH--
Q 043255 216 FSDHKYFLD---FLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILG---------AFQEKDPVCHSSMWD-- 281 (1843)
Q Consensus 216 f~~~k~fW~---~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~---------~l~e~d~~~~~~lWe-- 281 (1843)
..+ +-+ .....+...|.|.|+.|..++++.|+.+-+ .+..+...++. .++..|...+.++=+
T Consensus 500 i~~---Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 500 IGS---LLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHH---HHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 431 111 123367899999999999999999876532 12223333333 333333333333222
Q ss_pred -H-HHHHHhcCCCceeecCcchhhhHHHHHHHHc
Q 043255 282 -A-ILLLSKRFPDCWTVLNAQKTILNRFWHFLKN 313 (1843)
Q Consensus 282 -a-lL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~ 313 (1843)
+ +-.+.++.+. .....-...+.-|++.+.+
T Consensus 576 c~~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 576 CNTLQSIIRKVGS--DIREVSDQIMGLFLRIFES 607 (859)
T ss_pred HHHHHHHHHHccc--cchhHHHHHHHHHHHHHcC
Confidence 2 2224444443 2222245577777777776
No 211
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.10 E-value=2.7e+02 Score=26.74 Aligned_cols=83 Identities=29% Similarity=0.312 Sum_probs=52.6
Q ss_pred HHHhh-hcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 11 HLKRL-ARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 11 ~lKkL-~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
.++.| .-+|+-.|..|.+-|..+-. . .++|. + -++.-|.+..||..+-..++.+- .+...|.|.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~----~---~~~~~---L-~~~l~d~~~~vr~~a~~aL~~i~---~~~~~~~L~~ 69 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGD----P---EAIPA---L-IELLKDEDPMVRRAAARALGRIG---DPEAIPALIK 69 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTH----H---HHHHH---H-HHHHTSSSHHHHHHHHHHHHCCH---HHHTHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC----H---hHHHH---H-HHHHcCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 45666 67888899998888874311 1 12222 2 22337999999999999998773 2444444444
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSL 113 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf 113 (1843)
+..-|.+..|..+|-.++
T Consensus 70 ------~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 ------LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ------HHTC-SSHHHHHHHHHHH
T ss_pred ------HHcCCCcHHHHHHHHhhc
Confidence 234456677777777765
No 212
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=22.95 E-value=39 Score=42.16 Aligned_cols=33 Identities=27% Similarity=0.828 Sum_probs=22.0
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHH
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKW 1827 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kW 1827 (1843)
..+||||+-.+- .+..+ .+| |-....+.|+...
T Consensus 74 ~~ecpicflyyp-s~~n~--~rc--C~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYP-SAKNL--VRC--CSETICGECFAPF 106 (482)
T ss_pred cccCceeeeecc-cccch--hhh--hccchhhhheecc
Confidence 369999999875 33333 233 7777777887653
No 213
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=21.99 E-value=1.1e+03 Score=36.74 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=129.9
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcCc--c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHH---Hhchhhh--h
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGKD--I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVI---TVGRDLA--P 85 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~~--l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~---~~gK~la--p 85 (1843)
|..-+..-+..|+..|..+....+... + .|.+|.-++ |--.++.++|+.|-.+.+.+.. -.++.+. -
T Consensus 455 L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~----LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aG 530 (2102)
T PLN03200 455 LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ----LLETGSQKAKEDSATVLWNLCCHSEDIRACVESAG 530 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCC
Confidence 333455677788888887765432111 2 456655554 3347788999999999998874 2222232 1
Q ss_pred hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHH
Q 043255 86 HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQ 165 (1843)
Q Consensus 86 ~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~R 165 (1843)
-++.++... -+.+..+-..|-.++....-..+++ .+ ..+++. + .++ + ..
T Consensus 531 AIppLV~LL----~sgd~~~q~~Aa~AL~nLi~~~d~~--~I----~~Lv~L----L-lsd-----------d-----~~ 579 (2102)
T PLN03200 531 AVPALLWLL----KNGGPKGQEIAAKTLTKLVRTADAA--TI----SQLTAL----L-LGD-----------L-----PE 579 (2102)
T ss_pred CHHHHHHHH----hCCCHHHHHHHHHHHHHHHhccchh--HH----HHHHHH----h-cCC-----------C-----hh
Confidence 233333332 2334555556666655543222221 11 112211 1 011 1 23
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHH
Q 043255 166 VISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYI 245 (1843)
Q Consensus 166 VvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll 245 (1843)
+..-++.+++.++......+..+ .+.. . . ..-+.++++++|+++.+++..+..|..++
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~-----------------~g~~-~-~---ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVR-----------------EGSA-A-N---DALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHH-----------------Hhhh-c-c---ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34445667777765431100000 0000 0 0 11234788899999999999999999999
Q ss_pred hcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCC
Q 043255 246 KNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFG 317 (1843)
Q Consensus 246 ~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~G 317 (1843)
...++..+.--.....+-++..+...+..+..+.=-++..++....+-....-++...+|.|.++|+.+..+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~ 709 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIE 709 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence 987664211000112334445666666666777666777777533222111113456788888888765443
No 214
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=21.91 E-value=1.2e+02 Score=24.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 222 FLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 222 fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
+.+.+.++++.||.++...+..++++
T Consensus 5 l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 5 LLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 56678889999999999999998864
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.67 E-value=4.6e+02 Score=26.84 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=62.9
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 7 EVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 7 ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
.+..+++.+.=..+=.|.-||..|..++..++ .. ..-++.-..++-...-|.|.=|=..|-+.+..++....+.+-|.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~-~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EP-VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cc-hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45678888877777799999999999999876 22 22345556788888889999999999999999998888766554
Q ss_pred h
Q 043255 87 L 87 (1843)
Q Consensus 87 L 87 (1843)
|
T Consensus 82 L 82 (92)
T PF10363_consen 82 L 82 (92)
T ss_pred H
Confidence 3
No 216
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.50 E-value=45 Score=36.62 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 043255 1834 SSCPLCQSP 1842 (1843)
Q Consensus 1834 stCPlCR~~ 1842 (1843)
-+||.|..+
T Consensus 124 f~Cp~Cg~~ 132 (147)
T smart00531 124 FTCPRCGEE 132 (147)
T ss_pred EECCCCCCE
Confidence 567766653
No 217
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=7.1e+02 Score=35.25 Aligned_cols=148 Identities=19% Similarity=0.154 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhhhhhhhhHhhccc
Q 043255 23 KLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRD---LAPHLKSLMGPWWFSQF 99 (1843)
Q Consensus 23 K~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~---lap~Lk~l~g~Wl~~~~ 99 (1843)
|.||..-+..+... +..+-..+..+.--.+.-+-.|+++-||-.|.-++..++...... +.||+|.+|---+.-+.
T Consensus 479 rarac~vl~~~~~~-df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 479 RARACWVLSQFSSI-DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 66666666665532 222223344444555556666999999999999999999877644 89999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 043255 100 DSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLD 179 (1843)
Q Consensus 100 D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~ 179 (1843)
+..-+.-.-..+.|-.-|+. |=..=|.-.||.=.-.+.. .+ +| | .+.+|..+.-+=+.++.|..+..+|.
T Consensus 558 e~End~Lt~vme~iV~~fse-ElsPfA~eL~q~La~~F~k-~l-~~----~---~~~~~~~ddk~iaA~GiL~Ti~Til~ 627 (1010)
T KOG1991|consen 558 EVENDDLTNVMEKIVCKFSE-ELSPFAVELCQNLAETFLK-VL-QT----S---EDEDESDDDKAIAASGILRTISTILL 627 (1010)
T ss_pred hcchhHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHH-HH-hc----c---CCCCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 3333344444432222221 11 12 2 11122222223456677777777775
Q ss_pred Hh
Q 043255 180 VL 181 (1843)
Q Consensus 180 ~l 181 (1843)
.+
T Consensus 628 s~ 629 (1010)
T KOG1991|consen 628 SL 629 (1010)
T ss_pred HH
Confidence 54
No 218
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=39 Score=41.94 Aligned_cols=41 Identities=24% Similarity=0.594 Sum_probs=26.8
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
-..|.||.+..... . --+|||.-. |..-- .+..+||+||.-
T Consensus 305 p~lcVVcl~e~~~~-~------fvpcGh~cc--ct~cs---~~l~~CPvCR~r 345 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSA-V------FVPCGHVCC--CTLCS---KHLPQCPVCRQR 345 (355)
T ss_pred CCceEEecCCccce-e------eecCCcEEE--chHHH---hhCCCCchhHHH
Confidence 35799999986632 1 126999844 44332 235689999964
No 219
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.71 E-value=1.8e+02 Score=35.13 Aligned_cols=64 Identities=17% Similarity=0.384 Sum_probs=47.5
Q ss_pred HhhhccCChhHHHHHHHHHHHHHhcCCc-ccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 223 LDFLKSQSVSIRSATYSVLKSYIKNIPH-VFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 223 W~~~k~~~p~VR~A~y~LL~tll~~~p~-~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
-.++.++++.+|...-++|..++.+.|. .+..+.+..+..-+...++ |..+.....++++.+.+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~ 69 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVK 69 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHh
Confidence 3567889999999999999999999984 4665555655555557774 44455555888888884
No 220
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.44 E-value=4e+02 Score=26.46 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=53.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh-hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHH
Q 043255 57 LLDYSREVRRATHEMMTSLVITVGRDLAPHLK-SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVF 135 (1843)
Q Consensus 57 siD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk-~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl 135 (1843)
.-|++.++|+.+-.+++.+..........+++ .+++..+.-+.|++..|...|..++...-..... ....+....++
T Consensus 16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~l 93 (120)
T cd00020 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKLIVLEAGGV 93 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHHHHHHCCCh
Confidence 34667889999999988888642222222233 4555555556788999999999999877654321 22233445567
Q ss_pred HHHHHHh
Q 043255 136 IYLEENL 142 (1843)
Q Consensus 136 ~~~~d~L 142 (1843)
..+...+
T Consensus 94 ~~l~~~l 100 (120)
T cd00020 94 PKLVNLL 100 (120)
T ss_pred HHHHHHH
Confidence 7766665
No 221
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=20.07 E-value=2.7e+02 Score=36.76 Aligned_cols=105 Identities=17% Similarity=0.356 Sum_probs=63.8
Q ss_pred HHHhHHhcCHHHHHHHHHHHHhccCCCCceEEEEec---cccEEEEEEEecCCce-EEEEecCCCCCCCcceEeeccccc
Q 043255 1673 ESFTRVWCSPPLIANELSQIKKANIADENFSLTVSK---SANEVVATYTKDETKM-DLIIRLPASYPLRPVDVECMRSLG 1748 (1843)
Q Consensus 1673 e~~t~~~~Sp~li~~el~~v~~~~~~~~~~~Vkv~~---~~~EV~a~Y~ide~~~-el~I~lP~~YPL~~v~V~~~~~vg 1748 (1843)
|.-++..+ |...+.||.. -|..|.|+.+. .++.|+..-.+|+..+ -+.+..|..||-++++|+. .+-
T Consensus 613 e~~~rq~l-p~vlqgElar------LD~kF~v~ld~~~~~nN~I~liCklddk~lPPl~lsVP~~YPaq~~~vdr--~~~ 683 (742)
T KOG4274|consen 613 EPVQRQNL-PEVLQGELAR------LDAKFEVDLDHQRHDNNHIILICKLDDKQLPPLRLSVPTTYPAQNVTVDR--AVI 683 (742)
T ss_pred Cchhhhhh-hHHHHHHHHh------hccceeecCCcccccCCeeEEEEEecCCCCCCeeeeccccccccchhhhh--HHH
Confidence 33343333 5555666643 34567777653 4678999999998753 5888999999999977652 221
Q ss_pred cCHH-HHHHHHHHH-HHHHHhccccHHHHHHHHHHhcccc
Q 043255 1749 ISEV-KQRKWLMSM-MLFVRNQNGALAEAIRIWKRNFDKE 1786 (1843)
Q Consensus 1749 vse~-k~r~Wll~~-~~~i~~qnGsi~d~l~~~k~nv~~~ 1786 (1843)
.+.. -....-.++ .++.+..+-||.|-|..|...|...
T Consensus 684 y~a~pflq~vq~s~~~RlsrP~~~Sit~lLntWe~~V~Qa 723 (742)
T KOG4274|consen 684 YLAAPFLQDVQNSVYERLSRPGLSSITDLLNTWEEQVNQA 723 (742)
T ss_pred hhhcHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH
Confidence 1110 011111111 1233445778999999999887653
Done!