Query 043255
Match_columns 1843
No_of_seqs 346 out of 1340
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct0_A Non-SMC element 1 homol 99.3 3.4E-13 1.2E-17 127.0 4.5 56 1782-1843 7-62 (74)
2 3k1l_B Fancl; UBC, ring, RWD, 99.3 1.2E-12 4.1E-17 152.5 5.9 115 1723-1843 229-371 (381)
3 1iym_A EL5; ring-H2 finger, ub 98.9 7.6E-10 2.6E-14 97.3 3.8 52 1787-1843 2-53 (55)
4 1x4j_A Ring finger protein 38; 98.8 6.3E-10 2.2E-14 104.3 1.9 60 1778-1843 11-70 (75)
5 3nw0_A Non-structural maintena 98.8 3E-10 1E-14 129.4 -1.0 79 1756-1843 149-227 (238)
6 2ecl_A Ring-box protein 2; RNF 98.8 1.6E-09 5.5E-14 103.6 3.7 51 1790-1843 15-74 (81)
7 2kiz_A E3 ubiquitin-protein li 98.8 3.7E-09 1.3E-13 97.3 4.1 51 1787-1843 11-61 (69)
8 3dpl_R Ring-box protein 1; ubi 98.7 3.7E-09 1.3E-13 106.4 3.8 52 1790-1843 37-99 (106)
9 1v87_A Deltex protein 2; ring- 98.7 5.2E-09 1.8E-13 105.6 4.5 55 1789-1843 24-92 (114)
10 2ep4_A Ring finger protein 24; 98.7 4.8E-09 1.6E-13 97.9 3.8 52 1786-1843 11-62 (74)
11 2l0b_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 102.9 3.2 51 1787-1843 37-87 (91)
12 2ecm_A Ring finger and CHY zin 98.7 6.5E-09 2.2E-13 91.2 3.8 50 1789-1843 4-53 (55)
13 2ea6_A Ring finger protein 4; 98.7 6.8E-09 2.3E-13 95.0 3.6 56 1786-1843 11-66 (69)
14 2ect_A Ring finger protein 126 98.7 9E-09 3.1E-13 97.0 3.7 52 1786-1843 11-62 (78)
15 4a0k_B E3 ubiquitin-protein li 98.6 4.3E-09 1.5E-13 107.5 0.2 52 1790-1843 48-110 (117)
16 2d8s_A Cellular modulator of i 98.6 1.5E-08 5E-13 97.1 3.6 50 1789-1843 14-68 (80)
17 3ng2_A RNF4, snurf, ring finge 98.6 1.2E-08 4.2E-13 94.0 2.7 55 1787-1843 7-61 (71)
18 2xeu_A Ring finger protein 4; 98.6 1.4E-08 4.9E-13 91.5 1.9 52 1790-1843 3-54 (64)
19 1chc_A Equine herpes virus-1 r 98.5 4.4E-08 1.5E-12 89.7 3.2 47 1789-1843 4-50 (68)
20 2ct2_A Tripartite motif protei 98.5 7.9E-08 2.7E-12 92.2 4.2 55 1786-1843 11-66 (88)
21 2djb_A Polycomb group ring fin 98.4 9.3E-08 3.2E-12 88.9 4.1 50 1786-1843 11-60 (72)
22 2yur_A Retinoblastoma-binding 98.4 9.3E-08 3.2E-12 89.6 3.8 52 1786-1843 11-62 (74)
23 3lrq_A E3 ubiquitin-protein li 98.4 7.5E-08 2.6E-12 95.5 3.1 48 1789-1843 21-68 (100)
24 2ysl_A Tripartite motif-contai 98.4 1.5E-07 5.2E-12 87.2 4.0 51 1786-1843 16-67 (73)
25 2ecn_A Ring finger protein 141 98.4 4.1E-08 1.4E-12 90.6 -0.1 48 1786-1843 11-58 (70)
26 2ecy_A TNF receptor-associated 98.4 2.6E-07 8.9E-12 84.4 4.8 50 1786-1843 11-60 (66)
27 2d8t_A Dactylidin, ring finger 98.3 1.5E-07 5.3E-12 87.2 2.6 47 1788-1843 13-59 (71)
28 4ayc_A E3 ubiquitin-protein li 98.3 9.3E-08 3.2E-12 100.1 1.1 46 1789-1843 52-97 (138)
29 2ecv_A Tripartite motif-contai 98.3 5.2E-07 1.8E-11 85.5 4.8 52 1785-1843 14-69 (85)
30 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.2E-07 1.4E-11 82.4 3.8 51 1788-1843 4-57 (60)
31 2ecw_A Tripartite motif-contai 98.3 5E-07 1.7E-11 85.7 4.4 51 1786-1843 15-69 (85)
32 2y43_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 90.4 3.2 46 1790-1843 22-67 (99)
33 3ztg_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 87.9 4.1 52 1786-1843 9-60 (92)
34 2ckl_B Ubiquitin ligase protei 98.2 3.6E-07 1.2E-11 98.3 3.3 46 1791-1843 55-100 (165)
35 2csy_A Zinc finger protein 183 98.2 5.3E-07 1.8E-11 85.6 3.9 48 1787-1843 12-59 (81)
36 2egp_A Tripartite motif-contai 98.2 3.3E-07 1.1E-11 86.2 2.3 52 1785-1843 7-63 (79)
37 1e4u_A Transcriptional repress 98.2 9.7E-07 3.3E-11 84.1 5.0 54 1786-1843 7-60 (78)
38 1t1h_A Gspef-atpub14, armadill 98.2 6.9E-07 2.4E-11 84.1 3.8 49 1787-1843 5-53 (78)
39 1g25_A CDK-activating kinase a 98.2 7.8E-07 2.7E-11 81.0 3.7 50 1790-1843 3-53 (65)
40 3fl2_A E3 ubiquitin-protein li 98.2 7.3E-07 2.5E-11 91.5 3.4 46 1790-1843 52-97 (124)
41 2ysj_A Tripartite motif-contai 98.2 1.2E-06 4.2E-11 79.1 4.5 48 1785-1839 15-63 (63)
42 2ckl_A Polycomb group ring fin 98.1 5.9E-07 2E-11 90.0 2.4 49 1787-1843 12-60 (108)
43 2ecj_A Tripartite motif-contai 98.1 1.7E-06 5.8E-11 76.5 4.7 47 1786-1839 11-58 (58)
44 4ap4_A E3 ubiquitin ligase RNF 98.1 7.8E-07 2.7E-11 91.1 2.1 54 1788-1843 70-123 (133)
45 1jm7_A BRCA1, breast cancer ty 98.1 1.6E-06 5.6E-11 86.8 4.3 47 1790-1843 21-68 (112)
46 4ap4_A E3 ubiquitin ligase RNF 98.1 9.2E-07 3.2E-11 90.6 2.2 51 1789-1843 6-58 (133)
47 2qk2_A LP04448P; mini spindles 98.1 8.1E-05 2.8E-09 83.6 17.8 210 11-314 20-234 (242)
48 3l11_A E3 ubiquitin-protein li 98.0 1.4E-06 4.8E-11 88.1 0.8 46 1790-1843 15-60 (115)
49 1z6u_A NP95-like ring finger p 97.9 3.1E-06 1.1E-10 90.0 3.4 46 1790-1843 78-123 (150)
50 1rmd_A RAG1; V(D)J recombinati 97.9 3.9E-06 1.3E-10 85.0 3.1 46 1790-1843 23-68 (116)
51 3hct_A TNF receptor-associated 97.9 4.1E-06 1.4E-10 85.3 3.0 51 1785-1843 13-63 (118)
52 4fdd_A Transportin-1; heat rep 97.9 0.00025 8.6E-09 93.6 20.4 356 15-384 183-560 (852)
53 2y1n_A E3 ubiquitin-protein li 97.9 5E-06 1.7E-10 100.3 3.8 46 1790-1843 332-377 (389)
54 1jm7_B BARD1, BRCA1-associated 97.7 7.6E-06 2.6E-10 83.2 1.6 44 1790-1843 22-65 (117)
55 2c2l_A CHIP, carboxy terminus 97.6 4.8E-05 1.6E-09 87.4 6.3 67 1769-1843 183-253 (281)
56 3knv_A TNF receptor-associated 97.6 1.1E-05 3.8E-10 85.0 0.1 49 1786-1842 27-75 (141)
57 2kr4_A Ubiquitin conjugation f 97.5 3.9E-05 1.3E-09 74.0 3.0 46 1789-1843 13-58 (85)
58 2kre_A Ubiquitin conjugation f 97.5 3.6E-05 1.2E-09 76.6 2.5 45 1790-1843 29-73 (100)
59 1wgm_A Ubiquitin conjugation f 97.4 4.8E-05 1.6E-09 75.4 2.8 45 1790-1843 22-67 (98)
60 2f42_A STIP1 homology and U-bo 97.4 6E-05 2.1E-09 82.4 3.1 49 1787-1843 103-151 (179)
61 1bor_A Transcription factor PM 97.4 5.5E-05 1.9E-09 67.2 2.0 42 1790-1843 6-47 (56)
62 4ic3_A E3 ubiquitin-protein li 97.3 5E-05 1.7E-09 71.2 1.5 41 1790-1843 24-65 (74)
63 2qk1_A Protein STU2; STU2P, XM 97.3 0.002 6.8E-08 73.6 14.7 199 4-292 17-224 (249)
64 3hcs_A TNF receptor-associated 97.3 6.4E-05 2.2E-09 81.0 1.8 52 1784-1843 12-63 (170)
65 2vje_A E3 ubiquitin-protein li 97.3 0.00012 4E-09 67.0 3.1 47 1790-1843 8-55 (64)
66 1u6g_C TIP120 protein, CAND1; 97.2 0.0057 1.9E-07 84.0 20.8 333 10-357 179-578 (1230)
67 1u6g_C TIP120 protein, CAND1; 97.2 0.018 6.1E-07 79.2 24.8 298 1-356 1-306 (1230)
68 2yu4_A E3 SUMO-protein ligase 97.1 0.00014 4.8E-09 71.3 2.4 47 1790-1842 7-59 (94)
69 1qgr_A Protein (importin beta 97.1 0.091 3.1E-06 68.7 29.1 331 7-355 172-558 (876)
70 2vje_B MDM4 protein; proto-onc 97.1 0.0002 6.9E-09 65.2 2.7 47 1790-1843 7-54 (63)
71 3htk_C E3 SUMO-protein ligase 97.0 0.00012 4.3E-09 83.7 1.1 45 1792-1842 183-229 (267)
72 4fdd_A Transportin-1; heat rep 97.0 0.031 1.1E-06 73.8 23.4 268 10-313 404-722 (852)
73 2ecg_A Baculoviral IAP repeat- 96.9 0.00037 1.3E-08 65.4 2.9 41 1790-1843 25-66 (75)
74 1b3u_A Protein (protein phosph 96.9 0.0081 2.8E-07 74.6 15.8 235 17-311 253-489 (588)
75 1ibr_B P95, importin beta-1 su 96.9 0.024 8.1E-07 68.1 18.8 245 8-292 173-441 (462)
76 2bpt_A Importin beta-1 subunit 96.9 0.024 8.1E-07 74.0 20.2 320 14-377 377-711 (861)
77 2bpt_A Importin beta-1 subunit 96.7 0.054 1.8E-06 70.7 21.5 296 19-357 194-509 (861)
78 1wim_A KIAA0161 protein; ring 96.6 0.00056 1.9E-08 66.7 1.7 49 1790-1842 5-61 (94)
79 3t6p_A Baculoviral IAP repeat- 96.3 0.00063 2.1E-08 81.6 0.1 42 1789-1843 294-336 (345)
80 2bay_A PRE-mRNA splicing facto 96.3 0.0012 4.1E-08 60.0 1.7 43 1792-1843 5-48 (61)
81 2ea5_A Cell growth regulator w 96.2 0.0025 8.7E-08 58.9 3.4 43 1788-1843 13-56 (68)
82 1w63_A Adapter-related protein 96.1 0.79 2.7E-05 58.7 27.0 307 3-353 99-470 (618)
83 2yho_A E3 ubiquitin-protein li 96.1 0.0013 4.6E-08 62.5 1.0 41 1790-1843 18-59 (79)
84 1b3u_A Protein (protein phosph 96.0 0.039 1.3E-06 68.5 14.0 184 53-290 247-433 (588)
85 1qgr_A Protein (importin beta 96.0 0.16 5.4E-06 66.4 20.2 230 21-283 623-866 (876)
86 4ffb_C Protein STU2; tubulin f 94.9 0.26 8.7E-06 56.5 14.7 188 13-248 16-214 (278)
87 2jdq_A Importin alpha-1 subuni 94.5 0.57 1.9E-05 56.1 17.0 260 8-313 22-287 (450)
88 1ibr_B P95, importin beta-1 su 94.4 1.4 5E-05 52.5 20.3 201 16-269 227-461 (462)
89 3vk6_A E3 ubiquitin-protein li 94.0 0.023 7.9E-07 56.2 2.6 45 1792-1843 3-47 (101)
90 4hat_C Exportin-1; heat repeat 93.6 14 0.00047 50.4 29.3 327 19-415 425-766 (1023)
91 2qk1_A Protein STU2; STU2P, XM 93.2 0.52 1.8E-05 53.7 12.5 105 10-115 108-217 (249)
92 1wa5_B Importin alpha subunit; 93.0 0.86 3E-05 56.6 15.3 257 8-314 89-353 (530)
93 2vgl_B AP-2 complex subunit be 92.2 6.2 0.00021 50.1 21.8 123 222-355 126-248 (591)
94 4hxt_A De novo protein OR329; 92.0 4.2 0.00015 44.2 17.5 232 8-290 4-243 (252)
95 2jdq_A Importin alpha-1 subuni 91.9 1.3 4.3E-05 53.1 14.2 227 14-288 115-347 (450)
96 4b8j_A Importin subunit alpha- 91.2 2.8 9.4E-05 51.9 16.6 257 8-314 76-340 (528)
97 2x1g_F Cadmus; transport prote 90.7 9.9 0.00034 50.8 22.4 233 8-272 506-747 (971)
98 2qk2_A LP04448P; mini spindles 90.3 1.5 5.2E-05 48.8 11.9 100 10-116 102-203 (242)
99 2x19_B Importin-13; nuclear tr 89.7 36 0.0012 45.3 26.4 122 11-143 494-622 (963)
100 2vgl_A Adaptor protein complex 89.6 25 0.00085 45.1 23.8 114 222-351 373-487 (621)
101 2vgl_B AP-2 complex subunit be 89.6 5.9 0.0002 50.3 17.9 102 15-119 130-232 (591)
102 4db8_A Armadillo-repeat protei 89.0 6.3 0.00021 43.3 15.6 227 6-283 12-246 (252)
103 2day_A Ring finger protein 25; 89.0 2.7 9.1E-05 42.9 11.6 99 1685-1785 13-124 (128)
104 2daw_A RWD domain containing p 87.1 2.4 8.2E-05 45.1 10.1 78 1712-1790 63-145 (154)
105 2iw3_A Elongation factor 3A; a 85.2 3.2 0.00011 56.1 12.0 108 8-118 97-204 (986)
106 2ebm_A RWD domain-containing p 85.0 3.6 0.00012 42.0 9.8 96 1685-1783 15-118 (128)
107 1ukx_A GCN2, GCN2 EIF2alpha ki 84.8 2.7 9.1E-05 43.4 8.8 65 1722-1786 63-129 (137)
108 4b8j_A Importin subunit alpha- 84.6 7 0.00024 48.3 14.1 225 17-288 171-400 (528)
109 1w63_A Adapter-related protein 84.4 10 0.00034 48.6 15.8 83 221-314 389-471 (618)
110 1wa5_B Importin alpha subunit; 83.7 33 0.0011 42.4 19.7 226 13-288 222-457 (530)
111 2vgl_A Adaptor protein complex 83.6 7.8 0.00027 49.8 14.3 165 79-312 68-234 (621)
112 4ffb_C Protein STU2; tubulin f 83.5 26 0.0009 39.7 17.3 186 59-291 20-215 (278)
113 2yz0_A Serine/threonine-protei 83.2 7.6 0.00026 40.1 11.5 62 1722-1783 62-125 (138)
114 3tpo_A Importin subunit alpha- 82.4 13 0.00043 46.4 15.3 236 8-288 78-322 (529)
115 2ebk_A RWD domain-containing p 82.2 4 0.00014 41.7 8.8 98 1685-1784 12-119 (128)
116 1xqr_A HSPBP1 protein; armadil 82.1 20 0.00068 41.9 15.8 176 21-249 55-241 (296)
117 3ltm_A Alpha-REP4; protein eng 80.8 22 0.00076 38.0 14.6 183 9-289 22-204 (211)
118 1wil_A KIAA1045 protein; ring 79.8 2.1 7.1E-05 41.2 5.1 36 1787-1827 12-47 (89)
119 4db6_A Armadillo repeat protei 78.4 42 0.0014 35.5 15.8 185 12-246 18-209 (210)
120 2x1g_F Cadmus; transport prote 77.9 71 0.0024 42.7 21.1 117 19-143 477-594 (971)
121 4hxt_A De novo protein OR329; 77.5 69 0.0024 34.5 17.5 186 15-250 53-245 (252)
122 2of3_A ZYG-9; multifunctional 77.5 47 0.0016 38.4 16.6 181 13-250 53-240 (266)
123 1wa5_C Importin alpha RE-expor 76.0 2.2E+02 0.0075 38.1 30.0 340 42-409 225-646 (960)
124 3ltj_A Alpharep-4; protein eng 74.5 35 0.0012 36.1 13.8 89 8-117 16-104 (201)
125 2z6h_A Catenin beta-1, beta-ca 73.7 95 0.0033 39.5 19.8 269 12-313 20-316 (644)
126 1oyz_A Hypothetical protein YI 73.2 1.1E+02 0.0038 34.0 18.2 91 10-116 27-118 (280)
127 3ul1_B Importin subunit alpha- 73.0 43 0.0015 41.5 16.0 236 8-288 59-303 (510)
128 1wa5_C Importin alpha RE-expor 73.0 1.1E+02 0.0036 41.1 20.8 123 18-144 417-559 (960)
129 4db6_A Armadillo repeat protei 72.3 56 0.0019 34.6 14.7 190 53-286 17-207 (210)
130 2lri_C Autoimmune regulator; Z 70.2 2.2 7.6E-05 39.3 2.6 45 1790-1841 12-58 (66)
131 4db8_A Armadillo-repeat protei 69.3 51 0.0017 35.9 13.9 187 11-245 59-250 (252)
132 2x19_B Importin-13; nuclear tr 68.5 3E+02 0.01 36.4 29.3 81 10-93 533-616 (963)
133 1jdh_A Beta-catenin; beta-cate 65.7 2.4E+02 0.0081 34.1 21.5 271 12-314 23-320 (529)
134 1z2u_A Ubiquitin-conjugating e 65.1 16 0.00054 38.5 8.3 61 1684-1746 8-75 (150)
135 2a7l_A Hypothetical ubiquitin- 64.7 8.5 0.00029 40.2 6.0 63 1683-1747 25-96 (136)
136 1fxt_A Ubiquitin-conjugating e 63.8 15 0.00052 38.6 7.8 61 1684-1746 5-73 (149)
137 2dax_A Protein C21ORF6; RWD do 63.1 43 0.0015 35.1 11.2 67 1723-1790 74-143 (152)
138 2awf_A Ubiquitin-conjugating e 62.6 24 0.00082 38.1 9.3 63 1682-1746 19-89 (172)
139 2fo3_A Ubiquitin-conjugating e 62.4 26 0.00088 35.8 9.0 62 1684-1747 10-78 (125)
140 2e2c_A Ubiquitin conjugating e 61.2 23 0.00077 37.6 8.6 63 1683-1747 12-81 (156)
141 2ayv_A Ubiquitin-conjugating e 61.0 24 0.00081 38.0 8.8 63 1683-1747 24-93 (166)
142 4hat_C Exportin-1; heat repeat 60.8 1.3E+02 0.0046 40.9 18.1 248 17-287 600-877 (1023)
143 2aak_A UBC1, ubiquitin conjuga 60.7 25 0.00086 37.1 8.9 61 1684-1746 8-75 (152)
144 1zdn_A Ubiquitin-conjugating e 60.0 27 0.00094 37.1 9.0 61 1684-1746 17-84 (158)
145 2grr_A Ubiquitin-conjugating e 59.9 22 0.00074 38.0 8.3 62 1683-1746 10-83 (161)
146 2h2y_A Ubiquitin-conjugating e 59.5 28 0.00097 36.1 8.8 63 1683-1747 23-92 (136)
147 3rcz_B SUMO-conjugating enzyme 58.4 26 0.00087 37.6 8.5 60 1684-1745 14-85 (163)
148 2r0j_A Ubiquitin carrier prote 58.2 27 0.00091 36.8 8.5 60 1685-1746 6-72 (149)
149 2c2v_B Ubiquitin-conjugating e 57.8 31 0.0011 36.5 9.0 61 1684-1746 9-76 (154)
150 2bep_A Ubiquitin-conjugating e 57.8 20 0.0007 38.1 7.6 63 1684-1746 12-82 (159)
151 2z6g_A B-catenin; FULL-length, 57.5 2.3E+02 0.008 37.1 19.2 244 15-289 159-429 (780)
152 1jat_B Ubiquitin-conjugating e 57.4 27 0.00094 36.2 8.3 63 1684-1747 10-82 (138)
153 1jat_A Ubiquitin-conjugating e 56.8 28 0.00094 36.9 8.4 62 1683-1746 8-76 (155)
154 1yh2_A HSPC150 protein similar 56.6 32 0.0011 37.0 8.9 61 1684-1746 8-75 (169)
155 2c4o_A Ubiquitin-conjugating e 56.5 29 0.001 37.2 8.6 61 1684-1746 23-90 (165)
156 2gjd_A Ubiquitin-conjugating e 56.3 28 0.00096 37.0 8.3 60 1684-1745 8-79 (157)
157 2pwq_A Ubiquitin conjugating e 55.7 31 0.0011 38.7 8.9 97 1684-1782 27-153 (216)
158 2ucz_A UBC7, ubiquitin conjuga 55.6 35 0.0012 36.5 9.0 61 1684-1746 8-76 (165)
159 3rz3_A Ubiquitin-conjugating e 55.6 25 0.00087 38.3 8.0 61 1684-1746 11-79 (183)
160 3h8k_A Ubiquitin-conjugating e 55.5 25 0.00087 37.5 7.9 61 1684-1746 7-75 (164)
161 4gpr_A Ubiquitin-conjugating e 55.4 34 0.0012 36.1 8.7 61 1684-1746 8-75 (151)
162 1wzv_A Ubiquitin-conjugating e 54.0 36 0.0012 36.0 8.6 63 1682-1746 6-75 (155)
163 3v43_A Histone acetyltransfera 53.5 10 0.00035 38.2 4.2 37 1787-1825 2-42 (112)
164 3bzh_A Ubiquitin-conjugating e 53.1 36 0.0012 37.6 8.7 61 1684-1746 52-119 (194)
165 1ayz_A UBC2, ubiquitin-conjuga 53.1 39 0.0013 36.4 8.9 61 1684-1746 8-75 (169)
166 1yrv_A Ubiquitin-conjugating l 53.0 28 0.00096 37.6 7.8 61 1684-1746 27-94 (169)
167 2q0v_A Ubiquitin-conjugating e 52.3 42 0.0014 35.7 8.9 63 1684-1747 25-97 (156)
168 1i7k_A Ubiquitin-conjugating e 52.0 36 0.0012 37.1 8.5 62 1684-1747 34-102 (179)
169 1weo_A Cellulose synthase, cat 51.8 21 0.00072 34.8 5.6 53 1790-1843 16-68 (93)
170 1f62_A Transcription factor WS 51.0 4.7 0.00016 34.9 1.0 46 1792-1841 2-49 (51)
171 2z5d_A Ubiquitin-conjugating e 50.8 32 0.0011 37.6 7.8 58 1684-1746 29-92 (179)
172 2vpb_A Hpygo1, pygopus homolog 50.7 6.3 0.00021 36.2 1.9 33 1789-1824 7-40 (65)
173 3ibv_A Exportin-T; karyopherin 50.6 1.6E+02 0.0054 40.0 16.2 57 45-102 697-754 (980)
174 2f4w_A Ubiquitin-conjugating e 49.8 37 0.0013 37.2 8.1 61 1683-1745 17-84 (187)
175 2gmg_A Hypothetical protein PF 49.6 3.1 0.00011 41.7 -0.3 27 1810-1843 68-94 (105)
176 1xqr_A HSPBP1 protein; armadil 49.2 1.8E+02 0.0062 33.7 14.4 187 64-295 56-245 (296)
177 2f4z_A Tgtwinscan_2721 - E2 do 49.1 38 0.0013 37.4 8.1 63 1684-1746 36-116 (193)
178 3ibv_A Exportin-T; karyopherin 49.0 6.5E+02 0.022 34.0 24.2 274 6-317 489-799 (980)
179 2k16_A Transcription initiatio 48.8 4 0.00014 38.1 0.3 47 1791-1841 19-67 (75)
180 1mm2_A MI2-beta; PHD, zinc fin 48.7 4.2 0.00014 36.7 0.4 46 1790-1842 9-56 (61)
181 2z6g_A B-catenin; FULL-length, 47.2 6E+02 0.02 33.2 20.5 128 5-142 114-243 (780)
182 2a4d_A Ubiquitin-conjugating e 46.9 58 0.002 34.9 9.0 63 1684-1747 29-101 (160)
183 3m1i_C Exportin-1; heat repeat 45.7 1.6E+02 0.0055 39.9 15.2 79 17-95 600-694 (1049)
184 2l5u_A Chromodomain-helicase-D 45.2 5 0.00017 36.2 0.3 46 1789-1841 10-57 (61)
185 2yt5_A Metal-response element- 43.9 7.3 0.00025 35.4 1.2 51 1789-1841 5-60 (66)
186 2ku3_A Bromodomain-containing 43.3 4.6 0.00016 37.8 -0.3 53 1786-1840 12-64 (71)
187 3fn1_B NEDD8-conjugating enzym 43.0 49 0.0017 35.4 7.7 61 1684-1746 18-85 (167)
188 2ysm_A Myeloid/lymphoid or mix 42.0 6.7 0.00023 39.3 0.7 48 1789-1840 6-55 (111)
189 1te4_A Conserved protein MTH18 41.1 15 0.00053 36.7 3.2 84 10-114 46-129 (131)
190 3tpo_A Importin subunit alpha- 41.0 1.9E+02 0.0064 35.8 13.7 190 15-247 302-498 (529)
191 3k9o_A Ubiquitin-conjugating e 40.8 52 0.0018 36.3 7.7 101 1683-1783 8-139 (201)
192 2jun_A Midline-1; B-BOX, TRIM, 40.3 13 0.00044 36.2 2.4 33 1791-1827 4-36 (101)
193 1zuo_A Hypothetical protein LO 39.2 46 0.0016 36.5 6.8 62 1684-1745 31-112 (186)
194 3e46_A Ubiquitin-conjugating e 39.0 44 0.0015 38.4 6.9 100 1684-1783 61-191 (253)
195 3ul1_B Importin subunit alpha- 39.0 1.3E+02 0.0044 37.3 11.7 190 15-247 283-479 (510)
196 2l43_A N-teminal domain from h 38.7 6.4 0.00022 38.2 -0.0 53 1787-1841 22-74 (88)
197 1oyz_A Hypothetical protein YI 37.9 4.5E+02 0.015 29.0 17.7 52 58-119 33-84 (280)
198 3tjz_B Coatomer subunit gamma; 37.5 1.7E+02 0.0059 35.1 12.0 219 13-289 111-351 (355)
199 1tte_A Ubiquitin-conjugating e 37.0 36 0.0012 38.2 5.7 60 1684-1745 6-73 (215)
200 2xb1_A Pygopus homolog 2, B-ce 36.9 11 0.00039 37.6 1.4 49 1790-1841 3-60 (105)
201 4ds2_A Ubiquitin-conjugating e 36.3 1.1E+02 0.0036 32.9 9.0 63 1685-1747 13-94 (167)
202 1yf9_A Ubiquitin carrier prote 36.3 87 0.003 33.8 8.3 56 1685-1745 17-78 (171)
203 2yql_A PHD finger protein 21A; 36.1 3.8 0.00013 36.3 -1.9 49 1787-1842 6-56 (56)
204 1we9_A PHD finger family prote 35.6 12 0.0004 33.8 1.2 50 1789-1841 5-57 (64)
205 1vdy_A Hypothetical protein (R 35.0 44 0.0015 35.2 5.5 67 10-76 53-129 (140)
206 3ltj_A Alpharep-4; protein eng 34.6 1.5E+02 0.0052 31.1 10.0 85 9-114 48-132 (201)
207 2lv9_A Histone-lysine N-methyl 34.6 9.1 0.00031 37.8 0.3 46 1791-1841 29-75 (98)
208 3a6p_A Exportin-5; exportin-5, 34.4 1.4E+02 0.005 41.2 12.1 109 16-128 542-670 (1204)
209 1zbd_B Rabphilin-3A; G protein 33.5 22 0.00076 37.1 3.0 50 1771-1824 38-87 (134)
210 2hlw_A Ubiquitin-conjugating e 33.2 72 0.0025 34.4 7.1 62 1685-1747 40-111 (170)
211 1wep_A PHF8; structural genomi 33.1 11 0.00036 35.7 0.5 47 1792-1842 14-63 (79)
212 4ddg_A Ubiquitin-conjugating e 32.8 85 0.0029 38.2 8.4 83 1685-1769 8-116 (399)
213 2kdx_A HYPA, hydrogenase/ureas 32.2 17 0.00057 37.0 1.8 27 1808-1842 72-99 (119)
214 3oc3_A Helicase MOT1, MOT1; re 31.7 1.7E+02 0.0057 37.7 10.5 107 87-245 297-403 (800)
215 3ltm_A Alpha-REP4; protein eng 31.6 78 0.0027 33.7 7.1 84 10-114 54-137 (211)
216 3a6p_A Exportin-5; exportin-5, 31.4 1.2E+03 0.042 32.1 22.5 124 19-142 260-405 (1204)
217 3gjx_A Exportin-1; transport, 31.3 1.3E+02 0.0043 41.5 10.5 216 45-287 663-903 (1073)
218 3ask_A E3 ubiquitin-protein li 31.3 9 0.00031 43.3 -0.4 47 1792-1842 176-225 (226)
219 2kgg_A Histone demethylase jar 31.3 8.6 0.0003 33.6 -0.4 46 1792-1840 4-52 (52)
220 1jdh_A Beta-catenin; beta-cate 31.2 6E+02 0.021 30.5 15.8 91 19-115 73-169 (529)
221 3gs3_A Symplekin, LD45768P; he 30.8 1.7E+02 0.0059 33.5 10.1 102 8-118 17-119 (257)
222 3b2a_A TON_1937, putative unch 30.3 6.8E+02 0.023 28.8 18.0 178 5-247 31-219 (265)
223 2kwj_A Zinc finger protein DPF 30.0 10 0.00035 38.3 -0.2 37 1791-1827 2-41 (114)
224 2lbm_A Transcriptional regulat 29.9 32 0.0011 36.3 3.5 45 1790-1841 63-116 (142)
225 3asl_A E3 ubiquitin-protein li 29.4 10 0.00034 35.3 -0.4 33 1810-1842 34-69 (70)
226 1r79_A Diacylglycerol kinase, 27.0 52 0.0018 31.8 4.1 47 1786-1838 34-80 (84)
227 3tjz_B Coatomer subunit gamma; 26.7 65 0.0022 38.7 5.9 79 221-314 143-221 (355)
228 2e6s_A E3 ubiquitin-protein li 26.3 11 0.00036 35.9 -0.8 46 1792-1841 28-76 (77)
229 2z6h_A Catenin beta-1, beta-ca 26.1 1.1E+03 0.037 29.7 19.4 101 11-115 61-166 (644)
230 2onu_A Ubiquitin-conjugating e 25.7 47 0.0016 35.1 3.9 24 1722-1745 46-69 (152)
231 1c4z_D UBCH7, ubiquitin conjug 25.4 47 0.0016 35.0 3.9 60 1685-1746 7-73 (154)
232 1y8x_A Ubiquitin-conjugating e 25.4 47 0.0016 35.4 3.9 59 1684-1746 10-75 (160)
233 2jyp_A Aragonite protein AP7; 25.3 28 0.00097 27.3 1.5 17 1789-1805 8-24 (36)
234 3kpa_A Probable ubiquitin fold 24.8 1E+02 0.0035 32.9 6.0 52 1698-1749 57-112 (168)
235 2of3_A ZYG-9; multifunctional 24.8 1.8E+02 0.006 33.7 8.7 78 10-89 171-248 (266)
236 1wev_A Riken cDNA 1110020M19; 24.3 20 0.0007 34.6 0.8 49 1790-1840 16-70 (88)
237 2y9m_A Ubiquitin-conjugating e 24.0 51 0.0017 35.5 3.9 62 1684-1745 10-88 (172)
238 2ct7_A Ring finger protein 31; 23.9 8.3 0.00028 37.0 -2.1 45 1792-1837 27-71 (86)
239 2nvu_C NEDD8-conjugating enzym 23.7 52 0.0018 35.9 3.9 59 1684-1746 30-95 (180)
240 1w9c_A CRM1 protein, exportin 23.4 1.9E+02 0.0064 34.4 8.7 63 228-290 133-198 (321)
241 3now_A UNC-45 protein, SD10334 23.2 7.8E+02 0.027 32.8 15.5 218 60-329 216-445 (810)
242 2lcq_A Putative toxin VAPC6; P 23.1 19 0.00064 38.4 0.2 26 1809-1842 132-157 (165)
243 3m1i_C Exportin-1; heat repeat 23.0 1.5E+03 0.051 30.4 23.9 68 58-125 550-628 (1049)
244 3o2u_A NEDD8-conjugating enzym 22.6 56 0.0019 35.9 3.9 59 1684-1746 33-104 (190)
245 3o2t_A Symplekin; heat repeat, 21.8 3.3E+02 0.011 33.1 10.7 103 8-118 27-129 (386)
246 3v43_A Histone acetyltransfera 21.7 23 0.00079 35.6 0.6 47 1792-1841 63-111 (112)
247 3ceg_A Baculoviral IAP repeat- 21.4 2E+02 0.0067 34.3 8.4 62 1685-1746 81-151 (323)
248 1weu_A Inhibitor of growth fam 20.5 28 0.00095 34.1 0.8 43 1792-1842 38-85 (91)
249 3shb_A E3 ubiquitin-protein li 20.2 16 0.00056 34.6 -0.9 32 1810-1841 42-76 (77)
No 1
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.4e-13 Score=127.01 Aligned_cols=56 Identities=27% Similarity=0.692 Sum_probs=50.2
Q ss_pred hcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1782 NFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1782 nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|.+...+++++|+||++++. |.++|.+|+|.||.+||++||+++++++||+||++|
T Consensus 7 ~~~~y~~~i~~C~IC~~~i~------~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 7 GRETYPDAVKICNICHSLLI------QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CCCCCSSSSCBCSSSCCBCS------SSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred chhhccCCCCcCcchhhHcc------cCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 56677888999999999997 457899999999999999999987778999999986
No 2
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.30 E-value=1.2e-12 Score=152.51 Aligned_cols=115 Identities=18% Similarity=0.424 Sum_probs=74.2
Q ss_pred ceEEEEec-CCCCCCCcceEeeccccccCH--HHHH-HHHHHHHHHHHhccccHHHHHHHHHHh-------cc------c
Q 043255 1723 KMDLIIRL-PASYPLRPVDVECMRSLGISE--VKQR-KWLMSMMLFVRNQNGALAEAIRIWKRN-------FD------K 1785 (1843)
Q Consensus 1723 ~~el~I~l-P~~YPL~~v~V~~~~~vgvse--~k~r-~Wll~~~~~i~~qnGsi~d~l~~~k~n-------v~------~ 1785 (1843)
...|.|.+ -|..|-..+.+... |-+. ..+| .|...+. .-..+.++.+.|+..-.- .. +
T Consensus 229 ~vSl~IeV~DP~~Pr~lPe~~Fl---Gpd~~V~~Lr~~l~~Nl~--~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e 303 (381)
T 3k1l_B 229 RVYLKLTIADPFACIASMSLKII---GPTEEVARLRHVLSDGLS--NWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDE 303 (381)
T ss_dssp TEEEEEEESCTTSTTTTEEEEEE---SSHHHHHHHHHHHHHHHH--TCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTT
T ss_pred CeEEEEEeCCCCCCCcCceeEEE---CChhHhHHHHHHHhhhhh--hcCccCCHHHHHHHHhCccccCCCcccccccccc
Confidence 45677777 66666666666442 2111 1122 2221111 122456676666554221 11 1
Q ss_pred ccCCCcccccccccccccCccccccccc--ccCCccCHhhHHHHHhcCCC---------CCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACK--TCKHKFHSACLYKWFSTSHK---------SSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~--~C~h~FH~~CL~kWf~~s~~---------stCPlCR~~~ 1843 (1843)
.-++..+|+|||+++.. ++++|++.|. +|||.||+.||++||++.+. .+||+||+++
T Consensus 304 ~ee~~~ECaICys~~l~-~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLD-GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCCSCCSCSSSCCSSCT-TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cccCCccCcccceeecC-CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 34577899999999984 6889999998 99999999999999997432 4899999864
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.88 E-value=7.6e-10 Score=97.35 Aligned_cols=52 Identities=27% Similarity=0.772 Sum_probs=41.1
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+++..+|+||++.+..++. . ...+.|+|.||..||.+|++. +.+||+||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~-~--~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEE-A--RFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSC-C--EECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCc-e--EECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4567899999999975432 1 223359999999999999986 57999999875
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=6.3e-10 Score=104.31 Aligned_cols=60 Identities=23% Similarity=0.664 Sum_probs=45.8
Q ss_pred HHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1778 IWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1778 ~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.|+.+......+..+|+||++.+...+ .....+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~~~~~~~~~C~IC~~~~~~~~----~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~ 70 (75)
T 1x4j_A 11 SYRFNPNNHQSEQTLCVVCMCDFESRQ----LLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADS 70 (75)
T ss_dssp CEEBCSSSCSSSCCEETTTTEECCBTC----EEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCC
T ss_pred cEEecCccccCCCCCCeECCcccCCCC----eEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcC
Confidence 344444445566779999999997533 1345579999999999999996 47999999875
No 5
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.82 E-value=3e-10 Score=129.36 Aligned_cols=79 Identities=25% Similarity=0.598 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCC
Q 043255 1756 KWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSS 1835 (1843)
Q Consensus 1756 ~Wll~~~~~i~~qnGsi~d~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~st 1835 (1843)
.|+...++.++..+++++|....++.|..+ +..+|+||++++. |.++|++|+|.||.+|+++||++.++.+
T Consensus 149 gWl~~~~g~~~l~~R~l~El~~~l~~~~~~---~i~~C~iC~~iv~------~g~~C~~C~~~~H~~C~~~~~~~~~~~~ 219 (238)
T 3nw0_A 149 KWLIEKEGEFTLHGRAILEMEQYIRETYPD---AVKICNICHSLLI------QGQSCETCGIRMHLPCVAKYFQSNAEPR 219 (238)
T ss_dssp TSEEEETTEEEECHHHHHHHHHHHHHHCTT---TCCBCTTTCSBCS------SCEECSSSCCEECHHHHHHHTTTCSSCB
T ss_pred cchhhhCCEEEecCccHHHHHHHHHHhcCC---CCCcCcchhhHHh------CCcccCccChHHHHHHHHHHHHhCCCCC
Confidence 344445566677788999999999999863 5789999999997 4589999999999999999999877789
Q ss_pred CCCCCCCC
Q 043255 1836 CPLCQSPF 1843 (1843)
Q Consensus 1836 CPlCR~~~ 1843 (1843)
||.|+.+|
T Consensus 220 CP~C~~~W 227 (238)
T 3nw0_A 220 CPHCNDYW 227 (238)
T ss_dssp CTTTCCBC
T ss_pred CCCCCCCC
Confidence 99999986
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=103.60 Aligned_cols=51 Identities=29% Similarity=0.831 Sum_probs=38.2
Q ss_pred Cccccccccccccc---------CcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTA---------NHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~---------d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.|+||++.+... +...+ ...++|+|.||..||.+|++. +++||+||.++
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~-~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~ 74 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCV-VVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDW 74 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCC-EEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBC
T ss_pred CCCCcccChhhhccCcccccccCCCceE-EEeCCCCCccChHHHHHHHHh--CCCCCCcCCCc
Confidence 56799999998641 11111 223369999999999999997 46999999875
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=3.7e-09 Score=97.33 Aligned_cols=51 Identities=29% Similarity=0.825 Sum_probs=40.2
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+...+|+||++.+..++. ....+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~C~IC~~~~~~~~~----~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSC----EEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCCCc----EEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccc
Confidence 3456689999999864321 334579999999999999997 46899999864
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.74 E-value=3.7e-09 Score=106.37 Aligned_cols=52 Identities=33% Similarity=0.739 Sum_probs=39.1
Q ss_pred CcccccccccccccC-------cccccc----cccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTAN-------HSLPRL----ACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d-------~~lP~~----~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.|+||++.|.... ...|.. ...+|+|.||..||.+|++. +++||+||.+|
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence 578999999997431 001222 23589999999999999996 58999999975
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.72 E-value=5.2e-09 Score=105.63 Aligned_cols=55 Identities=27% Similarity=0.609 Sum_probs=39.8
Q ss_pred CCcccccccccccccCc---------cccc--ccccccCCccCHhhHHHHHhcC---CCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANH---------SLPR--LACKTCKHKFHSACLYKWFSTS---HKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~---------~lP~--~~C~~C~h~FH~~CL~kWf~~s---~~stCPlCR~~~ 1843 (1843)
..++|+||++.|..... .-|. ....+|+|.||..||.+|++.. .+.+||+||..|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 34689999999964320 1111 1245899999999999999642 357999999865
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=4.8e-09 Score=97.88 Aligned_cols=52 Identities=37% Similarity=0.894 Sum_probs=40.6
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
......+|+||++.+...+. ....+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~----~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~ 62 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDE----LGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPV 62 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSC----EEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred cCCCCCCCcCCCcccCCCCc----EEEcCCCCEecHHHHHHHHHc--CCcCCCcCccc
Confidence 44556799999999874321 122369999999999999997 46999999874
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=4e-09 Score=102.85 Aligned_cols=51 Identities=29% Similarity=0.746 Sum_probs=40.3
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.....+|+||++.+..++. ....+|+|.||..||.+|++. +.+||+||.++
T Consensus 37 ~~~~~~C~IC~~~~~~~~~----~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDV----ATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTTCE----EEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCCCc----EEecCCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence 3455689999999975431 233469999999999999986 46999999865
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.70 E-value=6.5e-09 Score=91.24 Aligned_cols=50 Identities=34% Similarity=0.772 Sum_probs=40.1
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+..+|+||++.+...+.. ....+|+|.||..||.+|++.. .+||+||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVV---AHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSC---EEECTTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcC---eEecCCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 456899999999643221 3455799999999999999974 7999999875
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.8e-09 Score=94.97 Aligned_cols=56 Identities=25% Similarity=0.572 Sum_probs=42.0
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...+..+|+||++.+......-......+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 66 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 66 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence 455677999999998743211011234589999999999999996 57999999875
No 14
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=9e-09 Score=96.97 Aligned_cols=52 Identities=27% Similarity=0.777 Sum_probs=40.5
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
......+|+||++.+...+. ....+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~----~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~ 62 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGES----VRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSL 62 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSC----EEECTTSCEEETTTTHHHHTT--TCSCTTTCCCC
T ss_pred cCCCCCCCeeCCccccCCCC----EEEeCCCCeecHHHHHHHHHc--CCcCcCcCCcc
Confidence 34556799999999874321 122369999999999999985 47999999875
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.62 E-value=4.3e-09 Score=107.55 Aligned_cols=52 Identities=31% Similarity=0.752 Sum_probs=0.5
Q ss_pred CcccccccccccccC--cc-----ccc----ccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTAN--HS-----LPR----LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d--~~-----lP~----~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.|+||++.|.... .+ .|. ....+|+|.||..||.+|+++ +++||+||.+|
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 578999999997421 00 011 122479999999999999997 57999999975
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=97.08 Aligned_cols=50 Identities=32% Similarity=0.747 Sum_probs=39.8
Q ss_pred CCcccccccccccccCcccccccccccC-----CccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCK-----HKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~-----h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....|+||++.+..++ .+ ..+|+ |.||..||.+|++.+++.+||+||.+|
T Consensus 14 ~~~~C~IC~~~~~~~~-~l----~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDES-PL----ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSS-CE----ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCC-ee----EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 4568999999987543 22 13565 999999999999987678999999865
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.60 E-value=1.2e-08 Score=94.01 Aligned_cols=55 Identities=25% Similarity=0.580 Sum_probs=40.7
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.++..+|+||++.+......-......+|||.||..||.+|++. +.+||+||.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCcc
Confidence 44567899999998742100001245589999999999999996 47999999864
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.56 E-value=1.4e-08 Score=91.46 Aligned_cols=52 Identities=25% Similarity=0.605 Sum_probs=39.0
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+|+||++.+......-......+|||.||..||.+|++. +.+||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccC
Confidence 45899999998742100001234589999999999999997 57999999864
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.49 E-value=4.4e-08 Score=89.73 Aligned_cols=47 Identities=32% Similarity=0.839 Sum_probs=38.0
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...+|+||++.+... ....+|||.||..|+.+|++. +.+||+||.++
T Consensus 4 ~~~~C~IC~~~~~~~------~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY------SMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC------EEETTTTEEESTTHHHHHHHH--SCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC------cEecCCCCeeHHHHHHHHHhC--cCcCcCCChhh
Confidence 456899999998631 134579999999999999986 47999999874
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=7.9e-08 Score=92.17 Aligned_cols=55 Identities=29% Similarity=0.653 Sum_probs=42.1
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC-CCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS-HKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s-~~stCPlCR~~~ 1843 (1843)
.++...+|+||++.+...+ ..|. ..+|||.||..||.+|++.+ +..+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~-~~~~--~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQ-LRPK--LLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTS-SCEE--ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hccCCCCCccCCccccccC-CCeE--ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 4556678999999998533 2232 23799999999999999974 346999999864
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9.3e-08 Score=88.94 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=39.8
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.++....|+||++.+.. | ....+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~-----p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 60 (72)
T 2djb_A 11 ELTPYILCSICKGYLID-----A-TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVV 60 (72)
T ss_dssp CCCGGGSCTTTSSCCSS-----C-EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCC
T ss_pred hcCCCCCCCCCChHHHC-----c-CEECCCCCHHHHHHHHHHHHc--CCcCCCcCccc
Confidence 34455689999999863 2 233479999999999999986 57999999875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.43 E-value=9.3e-08 Score=89.56 Aligned_cols=52 Identities=17% Similarity=0.465 Sum_probs=40.3
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.....|+||++.+.. |. ..+.|||.||..||.+|++.++..+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD-----AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTT-----CE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhC-----Ce-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 34455689999999873 22 222399999999999999976567999999863
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.42 E-value=7.5e-08 Score=95.48 Aligned_cols=48 Identities=25% Similarity=0.803 Sum_probs=39.6
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....|+||++.+.. | ..|.+|||.||..||.+|++.+ +.+||+||.++
T Consensus 21 ~~~~C~IC~~~~~~-----p-~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-----A-RLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSS-----E-EECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBC
T ss_pred CCCCCccCCccccC-----c-cccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcC
Confidence 34589999999963 2 3557899999999999999974 37999999874
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=87.25 Aligned_cols=51 Identities=27% Similarity=0.673 Sum_probs=39.9
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhc-CCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST-SHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~-s~~stCPlCR~~~ 1843 (1843)
.++....|+||++.+.. |.. .+|||.||..||.+|++. .++.+||+||.++
T Consensus 16 ~~~~~~~C~IC~~~~~~-----~~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK-----PVT--IDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCBCTTTCSBCSS-----EEE--CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred hCccCCEeccCCcccCC-----eEE--cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 44556789999998863 222 279999999999999984 2456999999875
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=4.1e-08 Score=90.56 Aligned_cols=48 Identities=29% Similarity=0.743 Sum_probs=38.9
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
......+|+||++.+.. ...+|+|.||..||.+|++. +.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~--------~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 58 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD--------LILPCAHSFCQKCIDKWSDR--HRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCSSSCCSCCS--------EEETTTEEECHHHHHHSSCC--CSSCHHHHHCT
T ss_pred cCCCCCCCeeCCcCccC--------cccCCCCcccHHHHHHHHHC--cCcCCCcCCcc
Confidence 34556789999998863 23479999999999999994 68999999764
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.6e-07 Score=84.40 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=39.1
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+.....|+||++.+.. |.. .+|||.||..||.+|++. ++.+||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS-----PKQ--TECGHRFCESCMAALLSS-SSPKCTACQESI 60 (66)
T ss_dssp SCCCCEECTTTCCEESS-----CCC--CSSSCCCCHHHHHHHHTT-SSCCCTTTCCCC
T ss_pred cCCcCCCCCCCChHhcC-----eeE--CCCCCHHHHHHHHHHHHh-CcCCCCCCCcCC
Confidence 34455689999999863 222 479999999999999973 357999999874
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.5e-07 Score=87.21 Aligned_cols=47 Identities=30% Similarity=0.578 Sum_probs=37.6
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....+|+||++.+.. | ...+|+|.||..||.+|++. +.+||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~-----~--~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 59 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-----P--VSLPCKHVFCYLCVKGASWL--GKRCALCRQEI 59 (71)
T ss_dssp SSCCBCSSSSSBCSS-----E--EEETTTEEEEHHHHHHCTTC--SSBCSSSCCBC
T ss_pred CCCCCCccCCcccCC-----C--EEccCCCHHHHHHHHHHHHC--CCcCcCcCchh
Confidence 345689999999853 2 12369999999999999986 47999999864
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.32 E-value=9.3e-08 Score=100.11 Aligned_cols=46 Identities=28% Similarity=0.765 Sum_probs=37.3
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....|+||++.+.. | ...+|||.||..||.+|++. +.+||+||.++
T Consensus 52 ~~~~C~iC~~~~~~-----~--~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIE-----A--VTLNCAHSFCSYCINEWMKR--KIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSS-----E--EEETTSCEEEHHHHHHHTTT--CSBCTTTCCBC
T ss_pred ccCCCcccCcccCC-----c--eECCCCCCccHHHHHHHHHc--CCcCCCCCCcC
Confidence 34479999999863 2 22479999999999999986 57999999874
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=5.2e-07 Score=85.53 Aligned_cols=52 Identities=31% Similarity=0.721 Sum_probs=40.9
Q ss_pred cccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhc----CCCCCCCCCCCCC
Q 043255 1785 KEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST----SHKSSCPLCQSPF 1843 (1843)
Q Consensus 1785 ~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~----s~~stCPlCR~~~ 1843 (1843)
..++...+|+||++.+.. |.. .+|+|.||..||.+|++. .++.+||+||.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQ-----PLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCCCTTTCSCCSS-----CBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred HHccCCCCCCCCCcccCC-----cee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 345566799999999863 221 379999999999999986 2367999999864
No 30
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.26 E-value=4.2e-07 Score=82.41 Aligned_cols=51 Identities=29% Similarity=0.738 Sum_probs=38.8
Q ss_pred CCCcccccccccccccCcccccccccccCC---ccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKH---KFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h---~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
++...|.||++.-. ..+. ..| .|++ .||..||.+|+..+++.+||+||.+|
T Consensus 4 ~~~~~CrIC~~~~~---~~l~-~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERF-RAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECS---CCCC-CSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCC---Ccee-cCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 34568999999732 2231 334 3666 99999999999988889999999875
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.26 E-value=5e-07 Score=85.68 Aligned_cols=51 Identities=29% Similarity=0.863 Sum_probs=40.4
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCC----CCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSH----KSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~----~stCPlCR~~~ 1843 (1843)
.+.....|+||++.+.. |. -.+|+|.||..||.+|++... +.+||+||.++
T Consensus 15 ~~~~~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKE-----PV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCTTTSCTTTCSCCSS-----CE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred hCccCCCCcCCChhhCc-----ce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34556799999999863 22 236999999999999999742 67999999864
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.26 E-value=3.2e-07 Score=90.40 Aligned_cols=46 Identities=28% Similarity=0.775 Sum_probs=37.5
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++.+.. | +...+|||.||..||.+|++. +.+||+||.++
T Consensus 22 ~~~C~IC~~~~~~-----p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNI-----A-MIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSS-----E-EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBC
T ss_pred CCCcccCChhhCC-----c-CEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcC
Confidence 4589999999873 2 223479999999999999995 57999999864
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.25 E-value=4.6e-07 Score=87.92 Aligned_cols=52 Identities=17% Similarity=0.465 Sum_probs=40.8
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+...-.|+||++.+.. |. ....|||.|+..||.+|+..+++.+||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD-----AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSS-----CE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcC-----ce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 44556689999999873 22 222399999999999999876668999999874
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.24 E-value=3.6e-07 Score=98.26 Aligned_cols=46 Identities=26% Similarity=0.811 Sum_probs=38.0
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..|+||++.+.. | ..+.+|||.||..||.+|++. ++.+||+||.++
T Consensus 55 ~~C~IC~~~~~~-----p-~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-----T-MTTKECLHRFCADCIITALRS-GNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-----E-EEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred CCCcccChHhhC-----c-CEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcC
Confidence 489999999873 2 344589999999999999995 367999999864
No 35
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.3e-07 Score=85.64 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=38.4
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+....|+||++.+.. |. ..+|+|.||..||.+|++. +.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 59 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-----PV--VTKCRHYFCESCALEHFRA--TPRCYICDQPT 59 (81)
T ss_dssp CCCCSBCSSSCSBCCS-----EE--ECTTSCEEEHHHHHHHHHH--CSBCSSSCCBC
T ss_pred CCCCCCCcCCCchhcC-----ee--EccCCCHhHHHHHHHHHHC--CCcCCCcCccc
Confidence 3345589999999863 22 2479999999999999986 57999999864
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.22 E-value=3.3e-07 Score=86.20 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=40.7
Q ss_pred cccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC-----CCCCCCCCCCCC
Q 043255 1785 KEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS-----HKSSCPLCQSPF 1843 (1843)
Q Consensus 1785 ~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s-----~~stCPlCR~~~ 1843 (1843)
..++....|+||++.+.. |.. .+|||.||..||.+|++.. ++.+||+||.++
T Consensus 7 ~~~~~~~~C~IC~~~~~~-----p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTE-----PLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCCCEETTTTEECSS-----CCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCC-----eeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 345566789999999863 222 3799999999999999963 257999999864
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.20 E-value=9.7e-07 Score=84.08 Aligned_cols=54 Identities=24% Similarity=0.687 Sum_probs=40.8
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.++....||||++.+...+..+ ..| +|||.|+..|+.++.+. ++..||.||.++
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~--~p~-~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~ 60 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINF--FPC-TCGYQICRFCWHRIRTD-ENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTC--CSS-TTSCCCCHHHHHHHTTS-SCSBCTTTCCBC
T ss_pred ccccCCcCCccCccCccccccc--ccc-CCCCCcCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3456678999999886433322 223 59999999999999875 467999999864
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.19 E-value=6.9e-07 Score=84.05 Aligned_cols=49 Identities=20% Similarity=0.575 Sum_probs=39.1
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+...-.|+||++.+.. |. ..+|||.||..||.+|++. ++.+||+||.++
T Consensus 5 ~~~~~~C~IC~~~~~~-----Pv--~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~ 53 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD-----PV--IVSTGQTYERSSIQKWLDA-GHKTCPKSQETL 53 (78)
T ss_dssp CSSSSSCTTTSCCCSS-----EE--EETTTEEEEHHHHHHHHTT-TCCBCTTTCCBC
T ss_pred CcccCCCCCccccccC-----CE--EcCCCCeecHHHHHHHHHH-CcCCCCCCcCCC
Confidence 3445689999999863 32 2379999999999999985 468999999864
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=7.8e-07 Score=80.96 Aligned_cols=50 Identities=24% Similarity=0.644 Sum_probs=37.4
Q ss_pred Ccccccccc-cccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYS-VIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys-~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++ .+..... + ..-.+|||.||..||.+|+.. ++.+||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~--~-~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSL--K-LMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSC--C-EEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCcc--C-eecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcc
Confidence 357999999 7763221 0 122479999999999999885 357899999874
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.16 E-value=7.3e-07 Score=91.46 Aligned_cols=46 Identities=26% Similarity=0.667 Sum_probs=37.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++.+.. |. ..+|||.||..||.+|++. +..+||+||.++
T Consensus 52 ~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFR-----PI--TTVCQHNVCKDCLDRSFRA-QVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSS-----EE--ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred CCCCCcCChHHcC-----cE--EeeCCCcccHHHHHHHHhH-CcCCCCCCCccC
Confidence 4589999999873 22 2379999999999999994 346999999864
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.2e-06 Score=79.09 Aligned_cols=48 Identities=31% Similarity=0.710 Sum_probs=37.5
Q ss_pred cccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC-CCCCCCCC
Q 043255 1785 KEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS-HKSSCPLC 1839 (1843)
Q Consensus 1785 ~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s-~~stCPlC 1839 (1843)
..++....|+||++.+.. |.. .+|||.||..||.+|++.. ++.+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK-----PVT--IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS-----CEE--CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC-----eEE--eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345566789999999873 322 2799999999999999853 35699998
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.15 E-value=5.9e-07 Score=90.00 Aligned_cols=49 Identities=20% Similarity=0.592 Sum_probs=39.1
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
++....|+||++.+.. | ....+|||.||..||.+|++. +.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~-----p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 60 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID-----A-TTIIECLHSFCKTCIVRYLET--SKYCPICDVQV 60 (108)
T ss_dssp HGGGTBCTTTSSBCSS-----E-EEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBS
T ss_pred cCCcCCCccCChHHhC-----c-CEeCCCCChhhHHHHHHHHHh--CCcCcCCCccc
Confidence 3445689999999863 2 234479999999999999996 37999999864
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.7e-06 Score=76.51 Aligned_cols=47 Identities=26% Similarity=0.855 Sum_probs=36.7
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhc-CCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST-SHKSSCPLC 1839 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~-s~~stCPlC 1839 (1843)
.+.....|+||++.+.. |. -.+|+|.||..||.+|++. .++.+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~-----p~--~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE-----PV--IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS-----CC--CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc-----cE--eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34556789999999863 21 2479999999999999874 346799998
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.09 E-value=7.8e-07 Score=91.13 Aligned_cols=54 Identities=26% Similarity=0.615 Sum_probs=40.0
Q ss_pred CCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+...+|+||++.+......--.....+|||.||..||.+|++. +.+||+||.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence 3456899999998742111111245589999999999999996 46999999864
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=1.6e-06 Score=86.75 Aligned_cols=47 Identities=36% Similarity=0.890 Sum_probs=37.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcC-CCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS-HKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s-~~stCPlCR~~~ 1843 (1843)
...|+||++.+.. |.. .+|||.||..||.+|++.. +..+||+||.++
T Consensus 21 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIKE-----PVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCSS-----CCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCcccChhhcC-----eEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 4489999998863 221 3799999999999999963 235899999864
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.08 E-value=9.2e-07 Score=90.57 Aligned_cols=51 Identities=31% Similarity=0.739 Sum_probs=39.1
Q ss_pred CCccccccccccccc--CcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTA--NHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~--d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
+..+|+||++.+... +.+. ....+|||.||..||.+|++. +.+||+||.++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~--~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRL--IVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCC--EEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccC--eEecCCCChhhHHHHHHHHHh--CCCCCCCCCcC
Confidence 456899999998642 1111 134589999999999999996 46999999864
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.06 E-value=8.1e-05 Score=83.58 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=153.0
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 11 HLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLL-LDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLs-iD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
.++.+.-+|-..|..|+++|..+++..+. ...+-+..-.....++. -|.+.+||..+-.+.+.|+...|+.+.||++.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45667789999999999999999987432 11111122233344444 49999999999999999999999999999999
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvss 169 (1843)
++|+-+...-|+...|..+|..++..++.. .+
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~----------------------------------~~-------------- 130 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYAS----------------------------------TS-------------- 130 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTT----------------------------------SC--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHc----------------------------------CC--------------
Confidence 999999999999999999999999866540 00
Q ss_pred HHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC-
Q 043255 170 SLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI- 248 (1843)
Q Consensus 170 SL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~- 248 (1843)
+..++ . .+...++|++|.||..+...|..++.+.
T Consensus 131 ----~~~ll--------------------------------------~---~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 131 ----LEAQQ--------------------------------------E---SIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp ----HHHHH--------------------------------------H---HHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred ----HHHHH--------------------------------------H---HHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 01111 1 1334467789999999999999998876
Q ss_pred CcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCc-e-eec-CcchhhhHHHHHHHHcc
Q 043255 249 PHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDC-W-TVL-NAQKTILNRFWHFLKNG 314 (1843)
Q Consensus 249 p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~-W-~~~-n~kK~~lprL~~~Lr~G 314 (1843)
|+......++.+.+.++..+.|+.+.+...-.+++-.+.+..++- - ... +.+..-..++..++.+.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 553333467889999999999999988888888888887766531 1 111 23444555555555543
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.95 E-value=1.4e-06 Score=88.12 Aligned_cols=46 Identities=22% Similarity=0.631 Sum_probs=37.0
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||+..+.. |.. .+|||.||..||.+|++. ++.+||+||.++
T Consensus 15 ~~~C~iC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVE-----PVT--LPCNHTLCKPCFQSTVEK-ASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSS-----CEE--CTTSCEECHHHHCCCCCT-TTSBCTTTCCBC
T ss_pred CCCCccCCcccCc-----eeE--cCCCCHHhHHHHHHHHhH-CcCCCCCCCccc
Confidence 3479999999863 222 379999999999999985 357999999864
No 49
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.95 E-value=3.1e-06 Score=90.05 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=37.2
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-.|+||++.+.. |.. .+|||.||..||.+|++. ++.+||+||.++
T Consensus 78 ~~~C~IC~~~~~~-----pv~--~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-----PVT--TECFHNVCKDCLQRSFKA-QVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCSS-----EEE--CTTSCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred CCEeecCChhhcC-----CEE--cCCCCchhHHHHHHHHHh-CCCcCCCCCccC
Confidence 3489999999863 222 479999999999999995 345899999864
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.91 E-value=3.9e-06 Score=85.02 Aligned_cols=46 Identities=30% Similarity=0.753 Sum_probs=37.5
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++.+.. |.. .+|||.||..||.+|++.. +.+||+||.++
T Consensus 23 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILAD-----PVE--TSCKHLFCRICILRCLKVM-GSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSS-----EEE--CTTSCEEEHHHHHHHHHHT-CSBCTTTCCBC
T ss_pred CCCCCCCCcHhcC-----cEE--cCCCCcccHHHHHHHHhHC-cCcCCCCCCCC
Confidence 4589999999863 222 4799999999999999974 57999999864
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.89 E-value=4.1e-06 Score=85.33 Aligned_cols=51 Identities=27% Similarity=0.644 Sum_probs=40.0
Q ss_pred cccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1785 KEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1785 ~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..++....|+||+..+.. |. . .+|||.||..||.+|++.+ +.+||+||.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~-----p~-~-~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~ 63 (118)
T 3hct_A 13 PPLESKYECPICLMALRE-----AV-Q-TPCGHRFCKACIIKSIRDA-GHKCPVDNEIL 63 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS-----EE-E-CTTSCEEEHHHHHHHHHHH-CSBCTTTCCBC
T ss_pred cCCCCCCCCCcCChhhcC-----eE-E-CCcCChhhHHHHHHHHhhC-CCCCCCCCCCc
Confidence 345556689999999863 21 2 3799999999999999974 34999999864
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.88 E-value=0.00025 Score=93.59 Aligned_cols=356 Identities=14% Similarity=0.102 Sum_probs=199.2
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhH
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPW 94 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~W 94 (1843)
|..-++..|..|++-|..++...+ ..+...++......-++..|.+..||..+..+++.++....+.+.||++.+++..
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l 261 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM 261 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 344566788899999988776432 2222233333344445667999999999999999999999999999999999999
Q ss_pred hhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCcccc----CCCCCChhhHHH---HHHHHH
Q 043255 95 WFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNL----SDKAIALDELEE---MHQQVI 167 (1843)
Q Consensus 95 l~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TL----SDks~~~EE~Ea---KY~RVv 167 (1843)
+...-|.+..|...|.+.+...-... ...+.+.-+...++..+...+..+.+.. .|. .+|+-++ ...++-
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~--~ed~~~dd~~~~~~vr 338 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV--EGGSGGDDTISDWNLR 338 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------------CCCCHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc--ccccccccccccchHH
Confidence 99999999999999999987765321 1122233344455555554443221100 010 0011000 111122
Q ss_pred HHHHHHHHHHHHHhhhcccCC---CCCcccccCcchhhhHHHHHhhhhHhhhccc------------hhHHhhhccCChh
Q 043255 168 SSSLLALATLLDVLVCEHFGR---PGFENITAEPKHASKARAIAVSFSEKLFSDH------------KYFLDFLKSQSVS 232 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~---~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~------------k~fW~~~k~~~p~ 232 (1843)
.++..++..+...+...-... .-.+.+.. + ..+.|.+++..+..+.... +.+-+.++++.+.
T Consensus 339 ~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~-~--~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 339 KCSAAALDVLANVYRDELLPHILPLLKELLFH-H--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC-S--SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 222333333222221000000 00000000 0 1334555544222221100 1245566888999
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHH
Q 043255 233 IRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLK 312 (1843)
Q Consensus 233 VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr 312 (1843)
||.++...+..+....+..........+-+.++..+.++++.+....-.++-.+.+..+..- ..--..+++.|...++
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l--~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL--VPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG--GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh--HhHHHHHHHHHHHHHH
Confidence 99999999988877543322234566778888888888888888888888877776544321 1123556777777776
Q ss_pred ccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhhcc
Q 043255 313 NGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGRNEPHSSNSDHKAFFRAFKECFLWGLLNAS 384 (1843)
Q Consensus 313 ~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl~~r~~s~s~~~a~~say~Ec~~~~l~~~~ 384 (1843)
+.........+..+--+...+.... ...+++..++..+..-+........+. ...+||+..+.+.++
T Consensus 494 ~~~~~~~~~~~~ai~~l~~~~~~~~-~~~~~~~~l~p~l~~~~~~l~d~~~~~----~~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 494 KYQHKNLLILYDAIGTLADSVGHHL-NKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATALQ 560 (852)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHGGGG-CCHHHHHHHHHHHHHHHHHSCTTCTTH----HHHHHHHHHHHHHHG
T ss_pred HhChHHHHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHh
Confidence 5433222233444444444444332 234577777777665433221111111 256899998877776
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.88 E-value=5e-06 Score=100.32 Aligned_cols=46 Identities=24% Similarity=0.713 Sum_probs=37.7
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+|+||++.+.. ....+|||.||..|+.+|++. ++.+||+||.++
T Consensus 332 ~~~C~ICle~~~~-------pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD-------VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC-------EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC-------eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3689999998742 245689999999999999984 357999999864
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=7.6e-06 Score=83.21 Aligned_cols=44 Identities=27% Similarity=0.788 Sum_probs=35.5
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-.|+||++.+.. |. ...+|||.|+..||.+|++ .+||+||.++
T Consensus 22 ~~~C~IC~~~~~~-----pv-~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNILRE-----PV-CLGGCEHIFCSNCVSDCIG----TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCCSS-----CB-CCCSSSCCBCTTTGGGGTT----TBCSSSCCBC
T ss_pred CCCCCCCChHhhC-----cc-EeCCCCCHHHHHHHHHHhc----CCCcCCCCcC
Confidence 4589999999863 21 2227999999999999998 5899999864
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.61 E-value=4.8e-05 Score=87.38 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=49.0
Q ss_pred cccHHHHHHHHHHhcccc----cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1769 NGALAEAIRIWKRNFDKE----FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1769 nGsi~d~l~~~k~nv~~~----~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+...++-.+|..-.... ....-.||||++.|.. | .+.+|||.|...||.+|+..+ ..+||+||.++
T Consensus 183 ~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~d-----P--v~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~ 253 (281)
T 2c2l_A 183 DKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMRE-----P--CITPSGITYDRKDIEEHLQRV-GHFNPVTRSPL 253 (281)
T ss_dssp HHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSS-----E--EECSSCCEEETTHHHHHHHHT-CSSCTTTCCCC
T ss_pred HHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcC-----C--eECCCCCEECHHHHHHHHHHC-CCCCcCCCCCC
Confidence 355667777787655421 2234479999999973 3 235699999999999999974 35699999875
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.56 E-value=1.1e-05 Score=85.01 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=38.6
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
.++..-.|+||+..+.. | +. .+|||.|+..||.+|++. ++.+||+||.+
T Consensus 27 ~l~~~~~C~IC~~~~~~-----p-v~-~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~ 75 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-----P-FQ-AQCGHRYCSFCLASILSS-GPQNCAACVHE 75 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-----E-EE-CTTSCEEEHHHHHHHGGG-SCEECHHHHHT
T ss_pred cCCcCcCCCCCChhhcC-----c-EE-CCCCCccCHHHHHHHHhc-CCCCCCCCCCc
Confidence 44555689999999973 3 22 379999999999999985 34599999974
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.49 E-value=3.9e-05 Score=73.98 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..-.||||+.+|.. | ...+|||.|...||.+|+.. +.+||+||.++
T Consensus 13 ~~~~CpI~~~~m~d-----P--V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l 58 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD-----P--VRLPSGTVMDRSIILRHLLN--SPTDPFNRQML 58 (85)
T ss_dssp TTTBCTTTCSBCSS-----E--EECTTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred hheECcccCchhcC-----C--eECCCCCEECHHHHHHHHhc--CCCCCCCcCCC
Confidence 34579999999973 3 23469999999999999995 47999999864
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.48 E-value=3.6e-05 Score=76.62 Aligned_cols=45 Identities=7% Similarity=0.157 Sum_probs=37.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-.||||+.+|.. | .+.+|||.|...||.+|+.. +.+||+||.++
T Consensus 29 ~~~CpI~~~~m~d-----P--V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l 73 (100)
T 2kre_A 29 EFRDPLMDTLMTD-----P--VRLPSGTIMDRSIILRHLLN--SPTDPFNRQTL 73 (100)
T ss_dssp TTBCTTTCSBCSS-----E--EEETTTEEEEHHHHHHHTTS--CSBCSSSCCBC
T ss_pred hhCCcCccCcccC-----C--eECCCCCEEchHHHHHHHHc--CCCCCCCCCCC
Confidence 3479999999973 2 23469999999999999984 57999999874
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.43 E-value=4.8e-05 Score=75.45 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=37.1
Q ss_pred CcccccccccccccCcccccccccccC-CccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCK-HKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~-h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-.||||+++|.. | .+.+|| |.|...||.+|+.. +.+||+||.++
T Consensus 22 ~~~CpI~~~~m~d-----P--V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l 67 (98)
T 1wgm_A 22 EFLDPIMSTLMCD-----P--VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPL 67 (98)
T ss_dssp TTBCTTTCSBCSS-----E--EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBC
T ss_pred hcCCcCccccccC-----C--eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCC
Confidence 4479999999973 2 234689 99999999999996 47999999874
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.39 E-value=6e-05 Score=82.39 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=39.1
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....-.||||..+|.. | .+.+|||.|-..||.+|+...+ .+||+||.++
T Consensus 103 ip~~f~CPI~~elm~D-----P--V~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l 151 (179)
T 2f42_A 103 IPDYLCGKISFELMRE-----P--CITPSGITYDRKDIEEHLQRVG-HFDPVTRSPL 151 (179)
T ss_dssp CCGGGBCTTTCSBCSS-----E--EECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBC
T ss_pred CcHhhcccCccccCCC-----C--eECCCCCEECHHHHHHHHHhCC-CCCCCCcCCC
Confidence 3444589999999973 3 2347999999999999999754 3899999875
No 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.37 E-value=5.5e-05 Score=67.18 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=33.2
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.-.|+||++.+.. | ...+|||.|+..||.+| +.+||+||.++
T Consensus 6 ~~~C~IC~~~~~~-----p--~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~ 47 (56)
T 1bor_A 6 FLRCQQCQAEAKC-----P--KLLPCLHTLCSGCLEAS-----GMQCPICQAPW 47 (56)
T ss_dssp CSSCSSSCSSCBC-----C--SCSTTSCCSBTTTCSSS-----SSSCSSCCSSS
T ss_pred CCCceEeCCccCC-----e--EEcCCCCcccHHHHccC-----CCCCCcCCcEe
Confidence 4579999999863 2 22469999999999883 46899999864
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.34 E-value=5e-05 Score=71.24 Aligned_cols=41 Identities=22% Similarity=0.534 Sum_probs=33.2
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++.+.. ....+|||. |+..|+.+| .+||+||.++
T Consensus 24 ~~~C~iC~~~~~~-------~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i 65 (74)
T 4ic3_A 24 EKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEAV------DKCPMCYTVI 65 (74)
T ss_dssp HTBCTTTSSSBCC-------EEEETTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred CCCCCCCCCCCCC-------EEEcCCCChhHHHHhhhcC------ccCCCcCcCc
Confidence 4489999998752 123479999 999999998 5899999875
No 63
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.002 Score=73.62 Aligned_cols=199 Identities=11% Similarity=0.145 Sum_probs=142.8
Q ss_pred CCHHHHHHHHhhhcCChhhHHHHHHHHHH-HHhccC-cCc-ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc
Q 043255 4 IDSEVAQHLKRLARKDPITKLKALSSLSA-LLKEKS-GKD-IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG 80 (1843)
Q Consensus 4 lD~ev~v~lKkL~KKD~tTK~KALqeL~~-lv~~~~-~~~-l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g 80 (1843)
+++++. .++.-+|...|.-||++|.. +++..+ ... -..+.+.+..+-+.+.-|.+.+||..+-++.+.|+...+
T Consensus 17 l~~~f~---~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 17 LPKDFQ---ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp SCTTHH---HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CChhHH---HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 455543 45577899999999999999 886532 110 112334444444455589999999999999999999999
Q ss_pred -hhhh-hhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhh
Q 043255 81 -RDLA-PHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDE 158 (1843)
Q Consensus 81 -K~la-p~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE 158 (1843)
.++. ||.+.++|+-+...-|..+.|..+|..++..++.. + +|.. .....
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~----------------------~--~~~~---~~~~l-- 144 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY----------------------Y--DPLA---SSGRN-- 144 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH----------------------S--CTTC---TTCTT--
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------------------c--cccc---cCCcH--
Confidence 9999 99999999999988888888887777766544321 0 1100 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHH
Q 043255 159 LEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATY 238 (1843)
Q Consensus 159 ~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y 238 (1843)
+.++. .+...++|+.|.||..+.
T Consensus 145 ------------------------------------------------------~~ll~---~l~~~l~~k~~~vk~~al 167 (249)
T 2qk1_A 145 ------------------------------------------------------EDMLK---DILEHMKHKTPQIRMECT 167 (249)
T ss_dssp ------------------------------------------------------HHHHH---HHHHHTTCSSHHHHHHHH
T ss_pred ------------------------------------------------------HHHHH---HHHHHHcCCChHHHHHHH
Confidence 11111 123346788999999999
Q ss_pred HHHHHHHhcCCc---ccccchh-hHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCC
Q 043255 239 SVLKSYIKNIPH---VFNEGNL-KIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPD 292 (1843)
Q Consensus 239 ~LL~tll~~~p~---~l~~~~~-k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd 292 (1843)
.+|..++...+. .+. ..+ +.+.+.+.+.++|+++.+...-++++-.+.+.+.+
T Consensus 168 ~~l~~~~~~~~~~~~~l~-~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 168 QLFNASMKEEKDGYSTLQ-RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHCCSCSHHHH-HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCcchhHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999999998763 232 256 78999999999999999999999999998877654
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.28 E-value=6.4e-05 Score=81.04 Aligned_cols=52 Identities=29% Similarity=0.682 Sum_probs=40.7
Q ss_pred ccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1784 DKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1784 ~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...++..-.|+||++.+.. | +.+ +|||.|+..||.+|++.. +.+||+||.++
T Consensus 12 ~~~~~~~~~C~IC~~~~~~-----p-v~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~ 63 (170)
T 3hcs_A 12 DPPLESKYECPICLMALRE-----A-VQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEIL 63 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSS-----E-EEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBC
T ss_pred ccCCCCCCCCCCCChhhcC-----c-EEC-CCCCHHHHHHHHHHHHhC-CCCCCCCccCc
Confidence 3445556689999999873 3 233 799999999999999864 35999999864
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.27 E-value=0.00012 Score=66.98 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=35.4
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+|+||++... +. ...-.+|||. |-..|+.+|.+. +.+||+||.++
T Consensus 8 ~~~C~IC~~~~~--~~---~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 55 (64)
T 2vje_A 8 IEPCVICQGRPK--NG---CIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI 55 (64)
T ss_dssp GSCCTTTSSSCS--CE---EEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred cCCCCcCCCCCC--CE---EEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence 458999999764 21 1111279999 789999999985 46899999975
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.25 E-value=0.0057 Score=84.03 Aligned_cols=333 Identities=10% Similarity=0.143 Sum_probs=176.2
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
..++.|...++..|.+|+.-|..++...+.+.+..+++ .+...+.-+.+..+|..+-++++.++..+|+.+.||++.
T Consensus 179 ~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~---~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 255 (1230)
T 1u6g_C 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE---HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK 255 (1230)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHH---HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTT
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH---HHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555666778899999999999887654333444444 344445555557899999999999999999999999999
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHHHhccCccc-----------cCCCCCC
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQ---AAFPAQEKRLDALLICATEVFIYLEENLKLTPQN-----------LSDKAIA 155 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~---~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~T-----------LSDks~~ 155 (1843)
+|+.-+..+.|.+.+|...|..++. ..++.. +.-+..+++..+...++..|+. +.+....
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~------~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE------VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC------CHHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH------HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccc
Confidence 9999999998988877777666655 444431 1223345555444433322221 0000000
Q ss_pred hh--hHHHHH-------HHHHHHHHHHHHHHHHHhhh---cccCCCC---CcccccCcchhhhHHHHHhhhhHhhhcc--
Q 043255 156 LD--ELEEMH-------QQVISSSLLALATLLDVLVC---EHFGRPG---FENITAEPKHASKARAIAVSFSEKLFSD-- 218 (1843)
Q Consensus 156 ~E--E~EaKY-------~RVvssSL~aL~~LL~~l~~---~~~~~~~---~e~~~~e~~~~sk~~~~~i~~~e~lf~~-- 218 (1843)
.| |.++.| .+|-.+++.++..+....+. +-+++-- .... .+. .+.+|..++..+..++..
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~--~~~Vr~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KER--EENVKADVFHAYLSLLKQTR 406 (1230)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCS--SSHHHHHHHHHHHHHHHHHC
T ss_pred cchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCC--chHHHHHHHHHHHHHHHHhc
Confidence 00 001122 24445566666655542210 0000000 0000 000 022343333222222110
Q ss_pred -------------------------chhHHh----hhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccC
Q 043255 219 -------------------------HKYFLD----FLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQ 269 (1843)
Q Consensus 219 -------------------------~k~fW~----~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~ 269 (1843)
-..++. .++++++.+|.+.+.++..++...|..+. .++..+.+.++..+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L~ 485 (1230)
T 1u6g_C 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSLN 485 (1230)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHTT
T ss_pred cccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHHc
Confidence 011233 37788999999999999999999887665 467889999999998
Q ss_pred CCCC--cchHHHHHHHHHHHhcCC-CceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCc---Cc-CCChH
Q 043255 270 EKDP--VCHSSMWDAILLLSKRFP-DCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPP---KA-VAADK 342 (1843)
Q Consensus 270 e~d~--~~~~~lWealL~l~k~~P-d~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~---~v-l~~~~ 342 (1843)
++.+ .+......++-.+.+.++ +.... .-..++|.|...++.....-.....-.+--++..+.. .. -.-..
T Consensus 486 d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~--~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 486 DKSSSSNLKIDALSCLYVILCNHSPQVFHP--HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHSSCGGGGHH--HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhCCHHHHHh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 8765 444444455555554432 21100 0124566666655432110000011122333333322 00 00123
Q ss_pred HHHHHHHHHHhhhcC
Q 043255 343 FFQDFFNSLWAGRNE 357 (1843)
Q Consensus 343 f~~~ff~al~~Gl~~ 357 (1843)
++..++..+..++..
T Consensus 564 ~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKA 578 (1230)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhc
Confidence 667777777777753
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.20 E-value=0.018 Score=79.18 Aligned_cols=298 Identities=13% Similarity=0.120 Sum_probs=171.7
Q ss_pred CCCCCHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCc----CcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 043255 1 MQDIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSG----KDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLV 76 (1843)
Q Consensus 1 ~~~lD~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~----~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~ 76 (1843)
|.+.+.++...|.+|.--|+-.|..|+++|...++.... .....+++. +..-+. |.+.+||.+|-.+++.++
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~---Ll~~L~-d~~~~vR~~A~~~L~~l~ 76 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKM---ILKLLE-DKNGEVQNLAVKCLGPLV 76 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHH---HHHHTT-CSSHHHHHHHHHHHHHHH
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHH---HHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999988765321 112234432 333333 999999999999999998
Q ss_pred HHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCC
Q 043255 77 ITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAA---FPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKA 153 (1843)
Q Consensus 77 ~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~---Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks 153 (1843)
..++. ++++.+++.-+.+.-|++..|..+|..++..+ ++...........+..+++..+.+.+..++
T Consensus 77 ~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~------- 146 (1230)
T 1u6g_C 77 SKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE------- 146 (1230)
T ss_dssp TTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-------
T ss_pred HhCCH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-------
Confidence 77665 78888999888888898888877777777644 332100000122345577777776663111
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhH
Q 043255 154 IALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSI 233 (1843)
Q Consensus 154 ~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~V 233 (1843)
+ .++..+++.++..++..... .+. + + ...++. .+-..+.+.++.|
T Consensus 147 ---~------~~~~~~al~~l~~~~~~~~~---------~l~--~-~-----------~~~ll~---~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 147 ---D------VSVQLEALDIMADMLSRQGG---------LLV--N-F-----------HPSILT---CLLPQLTSPRLAV 191 (1230)
T ss_dssp ---C------HHHHHHHHHHHHHHHHHTCS---------SCT--T-T-----------HHHHHH---HHGGGGGCSSHHH
T ss_pred ---c------hHHHHHHHHHHHHHHHHhHh---------HHH--H-H-----------HHHHHH---HHHHHHcCCcHHH
Confidence 1 26778889999988865411 111 0 0 112222 2444567888999
Q ss_pred HHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCC-CCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHH
Q 043255 234 RSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQE-KDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLK 312 (1843)
Q Consensus 234 R~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e-~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr 312 (1843)
|++....+..+....++.+-. .+-+.++..+.+ .++.+....-+++-.+....|+... .--+.++|-+.+.++
T Consensus 192 R~~a~~al~~l~~~~~~~~~~----~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHHHHTTTC----CT----THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHH----HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhc
Confidence 999999999999877643322 233444433322 2234444455666666666665221 112345555555554
Q ss_pred ccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhhc
Q 043255 313 NGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGRN 356 (1843)
Q Consensus 313 ~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl~ 356 (1843)
.....-.......+--+....|.++ ..+...++..+...+.
T Consensus 266 d~~~~vR~~a~~~l~~l~~~~~~~~---~~~l~~li~~ll~~l~ 306 (1230)
T 1u6g_C 266 VDDDELREYCIQAFESFVRRCPKEV---YPHVSTIINICLKYLT 306 (1230)
T ss_dssp SCCTTTHHHHHHHHHHHHHCTTCCC---HHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHH---HHhHHHHHHHHHHHhC
Confidence 3211111122333333444444332 1244555555554443
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=71.35 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=36.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcC----CCCCCCC--CCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS----HKSSCPL--CQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s----~~stCPl--CR~~ 1842 (1843)
.-.||||+.+|.. |- ....|||.|...||.+|+... +..+||+ |+..
T Consensus 7 ~~~CPI~~~~~~d-----PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKK-----PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSS-----EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcC-----CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3479999999973 32 222499999999999999864 2459999 9854
No 69
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.11 E-value=0.091 Score=68.68 Aligned_cols=331 Identities=12% Similarity=0.018 Sum_probs=174.3
Q ss_pred HHHHHHHhhhcCC---hhhHHHHHHHHHHHHhccCcCcc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhch
Q 043255 7 EVAQHLKRLARKD---PITKLKALSSLSALLKEKSGKDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGR 81 (1843)
Q Consensus 7 ev~v~lKkL~KKD---~tTK~KALqeL~~lv~~~~~~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK 81 (1843)
.+...|.+..+.+ ...|..|++-|..++..-+ +.+ ....+.......++.-|.+.+||..+..+++.++...++
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH-HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 4444455555544 5678889999988765321 011 111112233344556688999999999999999999999
Q ss_pred hhhhhhh-hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChh-----------------h-HHHHHHHHHHHHHHHHHHHh
Q 043255 82 DLAPHLK-SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQE-----------------K-RLDALLICATEVFIYLEENL 142 (1843)
Q Consensus 82 ~lap~Lk-~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e-----------------K-r~~a~~~cq~eIl~~~~d~L 142 (1843)
.+.||++ .+++.-+.+..|.+..|...|.+.+...-.... + .....+-...+++..+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 9999999 999998888889999999998887764421100 0 00111111244444444444
Q ss_pred ccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---CCCcccccCcchhhhHHHHHhhhhHhhhcc-
Q 043255 143 KLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGR---PGFENITAEPKHASKARAIAVSFSEKLFSD- 218 (1843)
Q Consensus 143 k~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~---~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~- 218 (1843)
.... .|. ||.+.+..+ ++..++..+.......-... .-...+.. . ..+.|.+++..+..+...
T Consensus 331 ~~~~---~d~----~~~~~~~r~---~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~-~--~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 331 TKQD---END----DDDDWNPCK---AAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-P--DWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp TCCC---SSC----CTTCCCHHH---HHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-S--SHHHHHHHHHHHHHTSSSS
T ss_pred hccc---ccc----cccccHHHH---HHHHHHHHHHHHCcHhhHHHHHHHHHHHccC-C--ChHHHHHHHHHHHHHHcCC
Confidence 2111 111 011111112 22222222222211000000 00000000 0 123444444322222110
Q ss_pred ------------chhHHhhhccCChhHHHHHHHHHHHHHhcCCccc-ccchhhHHHHHHHcccCCCCCcchHHHHHHHHH
Q 043255 219 ------------HKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVF-NEGNLKIIATAILGAFQEKDPVCHSSMWDAILL 285 (1843)
Q Consensus 219 ------------~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l-~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~ 285 (1843)
-..+.+.++.+.+.||.++...+..++...+..+ ....++.+-+.++..+.++ +.+......++-.
T Consensus 398 ~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~ 476 (876)
T 1qgr_A 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSS 476 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 0124556678889999999999999999876543 2355777888888888775 6666666666666
Q ss_pred HHhcCC--------C---ceee-cCcchhhhHHHHHHHHccCCCCC---ccchhhHHHHhhhCCcCcCCChHHHHHHHHH
Q 043255 286 LSKRFP--------D---CWTV-LNAQKTILNRFWHFLKNGCFGSQ---QVSYPALVLFLDVVPPKAVAADKFFQDFFNS 350 (1843)
Q Consensus 286 l~k~~P--------d---~W~~-~n~kK~~lprL~~~Lr~G~~Gsa---~~~yp~LlplLs~iP~~vl~~~~f~~~ff~a 350 (1843)
+....+ + .-.. ..--..++|.|.+.++....... ...+..|--++..++.+ ...+...++..
T Consensus 477 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~~~l~~~ 553 (876)
T 1qgr_A 477 LAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD---CYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST---THHHHHHHHHH
T ss_pred HHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh---hHHHHHHHHHH
Confidence 655432 1 0000 01123466666666654321111 12455666666666653 22345555555
Q ss_pred HHhhh
Q 043255 351 LWAGR 355 (1843)
Q Consensus 351 l~~Gl 355 (1843)
+...+
T Consensus 554 l~~~l 558 (876)
T 1qgr_A 554 IMERL 558 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 70
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.09 E-value=0.0002 Score=65.20 Aligned_cols=47 Identities=17% Similarity=0.449 Sum_probs=36.0
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+|+||++... + +...-.+|||. |...|+.+|.+. +.+||+||.++
T Consensus 7 ~~~C~IC~~~~~--~---~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPR--D---GNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBS--C---EEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred CCCCcccCCcCC--C---eEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence 458999999654 2 11222379998 999999999985 37999999875
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00012 Score=83.74 Aligned_cols=45 Identities=24% Similarity=0.657 Sum_probs=37.5
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC--CCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL--CQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl--CR~~ 1842 (1843)
.||||+..|.. | ++...|||.|-..||.+|++..+..+||+ ||++
T Consensus 183 ~CPIcl~~f~D-----P-Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 183 TCPITCKPYEA-----P-LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp BCTTTSSBCSS-----E-EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred ECcCccCcccC-----C-eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 79999999963 3 23457999999999999999765678999 9975
No 72
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.01 E-value=0.031 Score=73.82 Aligned_cols=268 Identities=11% Similarity=0.073 Sum_probs=143.3
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
..++.|.-.++..|..|..-|..+...........+++.=...+-+...|++.+||+.+-.+++.++..+++.+.||++.
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ 483 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 483 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHH
Confidence 44555555566677767766665554221111222222222222234458899999999999999999999999999999
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHHhhCCChhh---HHHHHHHHHHHHHHHHHHHh------------------------
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEK---RLDALLICATEVFIYLEENL------------------------ 142 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eK---r~~a~~~cq~eIl~~~~d~L------------------------ 142 (1843)
+++.-+...-+........+.+++...+..-.+ +.+ +...++..+.+..
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~----~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE----YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHH----HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHH----HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 999987777666555555555555544311000 000 0112222222111
Q ss_pred -------------------ccCc--cccC--CC-CCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCc
Q 043255 143 -------------------KLTP--QNLS--DK-AIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEP 198 (1843)
Q Consensus 143 -------------------k~Tp--~TLS--Dk-s~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~ 198 (1843)
+.+. ...+ +. ....+|. .+..+++.+++.+...+.. +. .
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-----~~~~~~l~~l~~l~~~l~~-~~--------~--- 622 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-----DFMIVALDLLSGLAEGLGG-NI--------E--- 622 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-----HHHHHHHHHHHHHHHHHGG-GG--------H---
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-----hHHHHHHHHHHHHHHHHhH-hH--------H---
Confidence 0000 0000 00 0000011 1334455555555544410 00 0
Q ss_pred chhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHH
Q 043255 199 KHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSS 278 (1843)
Q Consensus 199 ~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~ 278 (1843)
. .+ ....++. .+-..+.++.+.||.+++.++..+....+..+. ..+..+.+.++..++..++.+...
T Consensus 623 ----~----~~-~~~~~~~---~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 623 ----Q----LV-ARSNILT---LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVK-PCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp ----H----HH-HTCCHHH---HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred ----H----Hh-cCCcHHH---HHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcCccchHHHHH
Confidence 0 00 0011221 133445678899999999999999988877664 356778888888887777665443
Q ss_pred HHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHc
Q 043255 279 MWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKN 313 (1843)
Q Consensus 279 lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~ 313 (1843)
.-.++=.+....++.-.. --..++++|...|++
T Consensus 690 a~~alg~i~~~~~~~~~p--~~~~il~~L~~~l~~ 722 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQP--YIPMVLHQLVEIINR 722 (852)
T ss_dssp HHHHHHHHHHHHGGGGGG--GTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHhHHH--HHHHHHHHHHHHhCC
Confidence 333444444444332211 124688888888874
No 73
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00037 Score=65.39 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=31.7
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
..+|+||++.+.. ..-.+|||. |+..|+.+ ..+||+||.++
T Consensus 25 ~~~C~IC~~~~~~-------~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEA------VDKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCC-------BCCSSSCCCCBCHHHHHH------CSBCTTTCCBC
T ss_pred CCCCCcCCCCCCC-------EEEecCCCHHHHHHHhhC------CCCCccCCcee
Confidence 3489999998752 123479999 99999964 36899999864
No 74
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.91 E-value=0.0081 Score=74.56 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=148.0
Q ss_pred cCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhh--hhhhhhhhhH
Q 043255 17 RKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLA--PHLKSLMGPW 94 (1843)
Q Consensus 17 KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~la--p~Lk~l~g~W 94 (1843)
-+|...|..|.+-|..+....+.+. +.+.-...+.++.-|++..||+.+...++.++...+.... +|++.++|..
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 3455677777777766665332221 1222233455566799999999999999999988886654 6888888888
Q ss_pred hhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHH
Q 043255 95 WFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLAL 174 (1843)
Q Consensus 95 l~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL 174 (1843)
.....|++..|..+|..++....+.-.+. .....++..+...++ |+ +..|..+++.++
T Consensus 330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~l~p~l~~~l~-------d~----------~~~Vr~~a~~~l 387 (588)
T 1b3u_A 330 KELVSDANQHVKSALASVIMGLSPILGKD-----NTIEHLLPLFLAQLK-------DE----------CPEVRLNIISNL 387 (588)
T ss_dssp HHHHTCSCHHHHHHHHTTGGGGHHHHCHH-----HHHHHTHHHHHHHHT-------CS----------CHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHhC-------CC----------chHHHHHHHHHH
Confidence 88889999999888888776554311111 112334444444442 21 124555667777
Q ss_pred HHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCccccc
Q 043255 175 ATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNE 254 (1843)
Q Consensus 175 ~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~ 254 (1843)
+.+...+.. + . .. +.++. .+-++++.++..||.+.+.++..+.+..+..+-
T Consensus 388 ~~l~~~~~~--------~------~----~~-------~~~lp---~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~- 438 (588)
T 1b3u_A 388 DCVNEVIGI--------R------Q----LS-------QSLLP---AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF- 438 (588)
T ss_dssp HHHHHHSCH--------H------H----HH-------HHHHH---HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred HHHHHhcCH--------H------H----HH-------HHHHH---HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH-
Confidence 777654411 0 0 00 11211 133456677889999999999999886543221
Q ss_pred chhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHH
Q 043255 255 GNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFL 311 (1843)
Q Consensus 255 ~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~L 311 (1843)
.+.+.+.++..+.++++.+....-.++-.+.+.++.-|. ...++|.|.+++
T Consensus 439 --~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~~~~ 489 (588)
T 1b3u_A 439 --DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMS 489 (588)
T ss_dssp --CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHTHHHHHHTT
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHh
Confidence 145778888889888888888888888888777665442 345666666544
No 75
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.86 E-value=0.024 Score=68.09 Aligned_cols=245 Identities=10% Similarity=0.011 Sum_probs=141.7
Q ss_pred HHHHHHhhhcC---ChhhHHHHHHHHHHHHhccC-cCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhh
Q 043255 8 VAQHLKRLARK---DPITKLKALSSLSALLKEKS-GKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDL 83 (1843)
Q Consensus 8 v~v~lKkL~KK---D~tTK~KALqeL~~lv~~~~-~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~l 83 (1843)
+...|-++.+. ++..|..|++-|..++.-.. ......+.+.-....+++..|++..||..+-.++..++...++.+
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 252 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 35678888888877553110 000000111112334456678999999999999999999999999
Q ss_pred hhhhh-hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChh------------------hHHHHHHHHHHHHHHHHHHHhcc
Q 043255 84 APHLK-SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQE------------------KRLDALLICATEVFIYLEENLKL 144 (1843)
Q Consensus 84 ap~Lk-~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e------------------Kr~~a~~~cq~eIl~~~~d~Lk~ 144 (1843)
.||++ .+++.=+.++.|.+..|...|.+.+...-.... .....+.-....++..+...+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~ 332 (462)
T 1ibr_B 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (462)
T ss_dssp TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHh
Confidence 99999 999988888889999999888887754421100 00001111113344333333321
Q ss_pred CccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHh
Q 043255 145 TPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLD 224 (1843)
Q Consensus 145 Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~ 224 (1843)
..+... .++- .+-.++..++..+...+. + . ....++. .+-.
T Consensus 333 ~d~d~~-----~~~~-----~~r~~a~~~L~~l~~~~~---------~------~-----------~~~~~~~---~l~~ 373 (462)
T 1ibr_B 333 QDENDD-----DDDW-----NPCKAAGVCLMLLATCCE---------D------D-----------IVPHVLP---FIKE 373 (462)
T ss_dssp CCSSCC-----TTCC-----SHHHHHHHHHHHHHHHTT---------T------T-----------HHHHHHH---HHHH
T ss_pred cccccc-----cccc-----hHHHHHHHHHHHHHHhcc---------H------H-----------HHHHHHH---HHHH
Confidence 100000 0000 112233444444443330 0 0 0111111 1334
Q ss_pred hhccCChhHHHHHHHHHHHHHhcCC-cccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCC
Q 043255 225 FLKSQSVSIRSATYSVLKSYIKNIP-HVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPD 292 (1843)
Q Consensus 225 ~~k~~~p~VR~A~y~LL~tll~~~p-~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd 292 (1843)
.+++.++.+|.+.+..+..+..... +.+. .++..+.+.++..+.++++.+....-.++-.+....++
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 4567889999999999999987543 3343 34567889999999988888777766677666665543
No 76
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.86 E-value=0.024 Score=74.00 Aligned_cols=320 Identities=11% Similarity=0.090 Sum_probs=177.4
Q ss_pred hhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhh--hhhhhhhh
Q 043255 14 RLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDL--APHLKSLM 91 (1843)
Q Consensus 14 kL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~l--ap~Lk~l~ 91 (1843)
.+...+.-.|..|+..|..++.....+.+...++.-....-+..-|++..||..+..+.+.+...++..+ .+|++.++
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l 456 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV 456 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 3445677788888888888764332233333443322222233468999999999999999999988876 57999999
Q ss_pred hhHhhcccCCcHHHHHHHHHHHHhhCCChh-hHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHH
Q 043255 92 GPWWFSQFDSNSEVSQAAKRSLQAAFPAQE-KRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSS 170 (1843)
Q Consensus 92 g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e-Kr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssS 170 (1843)
++-+.++.|+ +.|..+|..++..+...-. -..+.+.-+..+|+..+...++.. + .+ .+|-..+
T Consensus 457 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~-d--------~~------~~vr~~a 520 (861)
T 2bpt_A 457 QACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI-D--------NE------FNARASA 520 (861)
T ss_dssp HHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS-C--------CG------GGHHHHH
T ss_pred HHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc-C--------cc------hHHHHHH
Confidence 9998888887 8888888888865432100 000122334466776666555321 0 01 1344566
Q ss_pred HHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhh-------c----cCChhHHHHHHH
Q 043255 171 LLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFL-------K----SQSVSIRSATYS 239 (1843)
Q Consensus 171 L~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~-------k----~~~p~VR~A~y~ 239 (1843)
+.+++.++..... + . ..+..+ .+ ..++. .+.+.. + ...+.+|..++.
T Consensus 521 ~~al~~l~~~~~~--------~-~---~~~~~~----l~---~~l~~---~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 521 FSALTTMVEYATD--------T-V---AETSAS----IS---TFVMD---KLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHHHCCG--------G-G---HHHHHH----HH---HHHHH---HHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcch--------h-h---HHHHHH----HH---HHHHH---HHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 7777777765411 0 0 001111 11 11221 122111 1 235678999999
Q ss_pred HHHHHHhcCCcccccchhhHHHHHHHcccCCCCC-cchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCCC
Q 043255 240 VLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDP-VCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFGS 318 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~-~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gs 318 (1843)
.+..+++..+..+. .....+-+.++..+...++ .+......++-.+.+..++.... --..++|.+...|+......
T Consensus 579 ~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 579 VLAAVIRKSPSSVE-PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK--YLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHCGGGTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHhhhhhH-HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHhccccHHH
Confidence 99999998876554 3456777888877877766 66666666666665554432211 01235566666663211111
Q ss_pred CccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHH
Q 043255 319 QQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGRNEPHSSNSDHKAFFRAFKECFL 377 (1843)
Q Consensus 319 a~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl~~r~~s~s~~~a~~say~Ec~~ 377 (1843)
.......+--+...+... ...+...++..+..++......+.-+.++..++.+...
T Consensus 656 r~~a~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 656 SITAVGFIADISNSLEED---FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHHHHHHHHHHTGGG---GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchh---ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 111111222233333221 12366777777777776432223334444444444333
No 77
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.67 E-value=0.054 Score=70.66 Aligned_cols=296 Identities=11% Similarity=0.040 Sum_probs=165.7
Q ss_pred ChhhHHHHHHHHHHHHhccCcC-cccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh-hhhhhHhh
Q 043255 19 DPITKLKALSSLSALLKEKSGK-DIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK-SLMGPWWF 96 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~-~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk-~l~g~Wl~ 96 (1843)
++..|..|++-|..++.-.... ......+.-....+++..|.+.+||..+-.+++.++...++.+.||++ .+++.-+.
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 273 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888765321100 000011112233345667899999999999999999999999999999 99999888
Q ss_pred cccCCcHHHHHHHHHHHHhhCCChhhH--------------HHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHH
Q 043255 97 SQFDSNSEVSQAAKRSLQAAFPAQEKR--------------LDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEM 162 (1843)
Q Consensus 97 ~~~D~~~~VA~aA~~sf~~~Fp~~eKr--------------~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaK 162 (1843)
+..|.+..|...|.+.+..+-...... .....-...+++..+...++...+ | ...|+-
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~---d--~~d~~~--- 345 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE---D--PEDDDW--- 345 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC---C---CCCCC---
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc---c--cccccC---
Confidence 999999999999999887554321000 001222224555555544432110 0 001111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHH
Q 043255 163 HQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLK 242 (1843)
Q Consensus 163 Y~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~ 242 (1843)
.+-.++..++..+...+.. + ....++. .+-..+.++++.+|.+....+.
T Consensus 346 --~~r~~a~~~L~~l~~~~~~--------~------------------~~~~l~~---~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 346 --NVSMSAGACLQLFAQNCGN--------H------------------ILEPVLE---FVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp --HHHHHHHHHHHHHHHHHGG--------G------------------GHHHHHH---HHHHHTTCSSHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHccH--------h------------------HHHHHHH---HHHHHcCCCChhHHHHHHHHHH
Confidence 2223444555555544310 0 0112221 2334455678899999999999
Q ss_pred HHHhcCC-cccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCCCCcc
Q 043255 243 SYIKNIP-HVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFGSQQV 321 (1843)
Q Consensus 243 tll~~~p-~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~ 321 (1843)
.+.+... ..+. ..++.+.+.++..+.+..+.+....-.++-.+....+........-..++|.|...|+.. ..-...
T Consensus 395 ~i~~~~~~~~~~-~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~ 472 (861)
T 2bpt_A 395 SIMDGPDKVQRT-YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATN 472 (861)
T ss_dssp HTSSSSCHHHHH-HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHH
T ss_pred HHHcCCCHHHHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHH
Confidence 9887643 4342 346677888888888877766655444554454433221111112345666666666432 000011
Q ss_pred chhhHHHHhhhCC---cCcCCChHHHHHHHHHHHhhhcC
Q 043255 322 SYPALVLFLDVVP---PKAVAADKFFQDFFNSLWAGRNE 357 (1843)
Q Consensus 322 ~yp~LlplLs~iP---~~vl~~~~f~~~ff~al~~Gl~~ 357 (1843)
..-.|..|...++ ++.+ ..++..++..+...+..
T Consensus 473 a~~al~~l~~~~~~~~~~~l--~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPI--YNFYPALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGG--GGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccccchhh--HHHHHHHHHHHHHHHhC
Confidence 1223444555443 2322 23567777777777764
No 78
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.60 E-value=0.00056 Score=66.75 Aligned_cols=49 Identities=20% Similarity=0.503 Sum_probs=36.3
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcC---C---CCCCCC--CCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS---H---KSSCPL--CQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s---~---~stCPl--CR~~ 1842 (1843)
..+|+||++.+...+. .....|+|.|...|+.++++.. + .-+||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~----~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQM----TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGE----EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccc----eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4589999998863221 1223699999999999999852 2 248999 9976
No 79
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.33 E-value=0.00063 Score=81.57 Aligned_cols=42 Identities=19% Similarity=0.565 Sum_probs=33.9
Q ss_pred CCcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
....|+||++.+.. ....+|||. |+..|+.+| ..||+||.++
T Consensus 294 ~~~~C~IC~~~~~~-------~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-------VVFIPCGHLVVCQECAPSL------RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCC-------EEEETTCCEEECTTTGGGC------SBCTTTCCBC
T ss_pred CCCCCCccCCcCCc-------eEEcCCCChhHhHHHHhcC------CcCCCCCCCc
Confidence 34689999998752 123479999 999999988 4899999875
No 80
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.30 E-value=0.0012 Score=59.98 Aligned_cols=43 Identities=19% Similarity=0.403 Sum_probs=36.0
Q ss_pred ccccccccccccCccccccccc-ccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACK-TCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~-~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
-||||.+.+. | | .+. .|||.|-..||.+|++.+ .+||++|.++
T Consensus 5 ~CpIs~~~m~--d---P--V~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L 48 (61)
T 2bay_A 5 LCAISGKVPR--R---P--VLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPL 48 (61)
T ss_dssp CCTTTCSCCS--S---E--EEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBC
T ss_pred EecCCCCCCC--C---C--EEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCC
Confidence 6999999997 3 3 344 799999999999999964 5799999864
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=58.91 Aligned_cols=43 Identities=23% Similarity=0.650 Sum_probs=33.3
Q ss_pred CCCcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1788 ~g~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.....|.||++... + ....+|+|. |...|+.+ ..+||+||.++
T Consensus 13 ~~~~~C~IC~~~~~--~-----~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--N-----WVLLPCRHTCLCDGCVKY------FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCC--C-----CEETTTTBCCSCTTHHHH------CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCC--C-----EEEECCCChhhhHHHHhc------CCCCCCCCcch
Confidence 34568999999653 2 344589999 99999984 36999999875
No 82
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.11 E-value=0.79 Score=58.73 Aligned_cols=307 Identities=14% Similarity=0.160 Sum_probs=176.2
Q ss_pred CCCHHHHH-----HHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 043255 3 DIDSEVAQ-----HLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVI 77 (1843)
Q Consensus 3 ~lD~ev~v-----~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~ 77 (1843)
+-+||+.. ..|-|.-+++..|.-||.-|..+.. . + +.+.=.....++..|.++.||..|-.+.+.+..
T Consensus 99 ~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~-~---~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 99 DERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---S-E---MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---H-H---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---H-H---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34666532 2344556788899999998888642 1 1 333333444566679999999999999999998
Q ss_pred HhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhc--cCccc----cCC
Q 043255 78 TVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLK--LTPQN----LSD 151 (1843)
Q Consensus 78 ~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk--~Tp~T----LSD 151 (1843)
.....+ +.+++.-.....|+++.|..+|..++....+.+......+.-+-..++..+.+.+. .+|+- .++
T Consensus 172 ~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 172 KVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp HCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred HChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 654332 23444445567899999999999999998876422223333333334433333221 01100 000
Q ss_pred C--------------CCChhhHHHHHHHH------------------HHHHHHH--------------HHHHHHHhhhcc
Q 043255 152 K--------------AIALDELEEMHQQV------------------ISSSLLA--------------LATLLDVLVCEH 185 (1843)
Q Consensus 152 k--------------s~~~EE~EaKY~RV------------------vssSL~a--------------L~~LL~~l~~~~ 185 (1843)
. ...++ ...++.++ +..+..+ ...|...+
T Consensus 248 ~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L---- 322 (618)
T 1w63_A 248 PFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFL---- 322 (618)
T ss_dssp HHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH----
T ss_pred ChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----
Confidence 0 00111 11111111 1111111 11111111
Q ss_pred cCCCCCcccccCcchhhhHHHHHhhhhHh-------hhccc-hhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchh
Q 043255 186 FGRPGFENITAEPKHASKARAIAVSFSEK-------LFSDH-KYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNL 257 (1843)
Q Consensus 186 ~~~~~~e~~~~e~~~~sk~~~~~i~~~e~-------lf~~~-k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~ 257 (1843)
.. . + ...|..++..... ++..+ ..+-..++++++.||+...+++..++.. .|+
T Consensus 323 -~~--~-----d----~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-------~nv 383 (618)
T 1w63_A 323 -LN--N-----D----KNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-------NNI 383 (618)
T ss_dssp -TC--S-----S----TTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-------SST
T ss_pred -hC--C-----C----CchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc-------ccH
Confidence 00 0 0 1122223322222 22111 2355566788899999999988887653 234
Q ss_pred hHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCc
Q 043255 258 KIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKA 337 (1843)
Q Consensus 258 k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~v 337 (1843)
+.+.+.++..+.+.++.....+-.++-.+..+||.. ....++.|.++|+.++.--....+-.+..++..-|.-
T Consensus 384 ~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~------~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l- 456 (618)
T 1w63_A 384 RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS------KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM- 456 (618)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC------HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-
Confidence 557777777777888888888889999998888632 2447899999999887656667788888888887742
Q ss_pred CCChHHHHHHHHHHHh
Q 043255 338 VAADKFFQDFFNSLWA 353 (1843)
Q Consensus 338 l~~~~f~~~ff~al~~ 353 (1843)
.......+++.+..
T Consensus 457 --~~~~v~~L~~~l~~ 470 (618)
T 1w63_A 457 --HAYTVQRLYKAILG 470 (618)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc
Confidence 12234444454443
No 83
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.10 E-value=0.0013 Score=62.51 Aligned_cols=41 Identities=24% Similarity=0.567 Sum_probs=32.3
Q ss_pred CcccccccccccccCcccccccccccCCc-cCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHK-FHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~-FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|+||++.... ..-.+|||. |-..|+.+| ..||+||.++
T Consensus 18 ~~~C~IC~~~~~~-------~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEIN-------STFCPCGHTVCCESCAAQL------QSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCC-------EEEETTCBCCBCHHHHTTC------SBCTTTCCBC
T ss_pred CCEeEEeCcccCc-------EEEECCCCHHHHHHHHHhc------CcCCCCCchh
Confidence 3489999987642 233589999 999999876 3899999864
No 84
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.03 E-value=0.039 Score=68.46 Aligned_cols=184 Identities=21% Similarity=0.187 Sum_probs=107.4
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhh---CCChhhHHHHHHH
Q 043255 53 YKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAA---FPAQEKRLDALLI 129 (1843)
Q Consensus 53 Y~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~---Fp~~eKr~~a~~~ 129 (1843)
..++.-|.+.+||..+-.+++.+...+|.. .+.+.+++.-...+.|++..|..+|..+|... ++.. .+. ..
T Consensus 247 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~---~~ 320 (588)
T 1b3u_A 247 LRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-CRE---NV 320 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT-THH---HH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh-hhh---hH
Confidence 345566888888888888888888877653 24556667666677788888888887776533 3321 110 12
Q ss_pred HHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHh
Q 043255 130 CATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAV 209 (1843)
Q Consensus 130 cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i 209 (1843)
....++.++.+.+ .|+ ..+|-.++..++..+...+.. + .
T Consensus 321 ~~~~l~p~l~~~l-------~d~----------~~~vR~~a~~~l~~l~~~~~~--------~------~---------- 359 (588)
T 1b3u_A 321 IMSQILPCIKELV-------SDA----------NQHVKSALASVIMGLSPILGK--------D------N---------- 359 (588)
T ss_dssp HHHTHHHHHHHHH-------TCS----------CHHHHHHHHTTGGGGHHHHCH--------H------H----------
T ss_pred HHHHHHHHHHHHh-------cCC----------CHHHHHHHHHHHHHHHHHhhH--------h------H----------
Confidence 2334444444332 111 113444555555555544310 0 0
Q ss_pred hhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 210 SFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 210 ~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
..+.++ ..|..+++.+++.||.+.++.+..+++..+.. ...+.+-+.+...+.+++..+.....+++-.+.+.
T Consensus 360 -~~~~l~---p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 360 -TIEHLL---PLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp -HHHHTH---HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH---HHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 011222 23566677888999999999999988865421 12345666666666666665666655665555544
Q ss_pred C
Q 043255 290 F 290 (1843)
Q Consensus 290 ~ 290 (1843)
.
T Consensus 433 ~ 433 (588)
T 1b3u_A 433 L 433 (588)
T ss_dssp H
T ss_pred c
Confidence 3
No 85
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.01 E-value=0.16 Score=66.43 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhccc
Q 043255 21 ITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDY-SREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQF 99 (1843)
Q Consensus 21 tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~-~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~ 99 (1843)
.+|..|+.-+..++... ++.+..+++.+....-+..-|. +..||..+-.+++.++..+|..+.||++.+++.-+...-
T Consensus 623 ~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVL-GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhC
Confidence 67888999888888653 3445556665554444444455 899999999999999999999999999999999776654
Q ss_pred C--CcHHHHHHHHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHH
Q 043255 100 D--SNSEVSQAAKRSLQAA---FPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLAL 174 (1843)
Q Consensus 100 D--~~~~VA~aA~~sf~~~---Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL 174 (1843)
+ .++.+...|..++... ++++ +.-+...++..+...++...+ ...||.++.-..+..+.+.++
T Consensus 702 ~~~~~~~~~~~~~~~l~~i~~~~g~~------~~~~l~~~~~~l~~~~~~~~~------~~d~~~~~~~~~~r~~~~~~~ 769 (876)
T 1qgr_A 702 NENVHRSVKPQILSVFGDIALAIGGE------FKKYLEVVLNTLQQASQAQVD------KSDYDMVDYLNELRESCLEAY 769 (876)
T ss_dssp CTTSCGGGHHHHHHHHHHHHHHHGGG------GGGGHHHHHHHHHHHHTCCCC------TTCHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHhhHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHhccCC------CCChHHHHHHHHHHHHHHHHH
Confidence 4 3455666666666533 3221 222445666666555432211 112333332234556667777
Q ss_pred HHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhh----ccC--ChhHHHHHHHHHHHHHhcC
Q 043255 175 ATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFL----KSQ--SVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 175 ~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~----k~~--~p~VR~A~y~LL~tll~~~ 248 (1843)
..++..+.. ....+ ..+. . ...+++. .++.++ .++ +..||++...+|..++...
T Consensus 770 ~~i~~~~~~-~~~~~-~~~~---~------------~~~~~~~---~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 770 TGIVQGLKG-DQENV-HPDV---M------------LVQPRVE---FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp HHHHHHHHC-SSSSC-CGGG---G------------GSGGGHH---HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-Ccccc-cchH---H------------HHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 777766521 00000 0000 0 0011111 122222 444 6799999999999999887
Q ss_pred Cc-ccccchhhHHHHHHHc-ccCCCCCcchHHHHHHH
Q 043255 249 PH-VFNEGNLKIIATAILG-AFQEKDPVCHSSMWDAI 283 (1843)
Q Consensus 249 p~-~l~~~~~k~i~~avl~-~l~e~d~~~~~~lWeal 283 (1843)
+. .+.+.-...+.+.++. .+.+.++.+....--|+
T Consensus 830 ~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 830 GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHH
Confidence 55 3321101345666665 78777766555444443
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.26 Score=56.54 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=119.5
Q ss_pred HhhhcCChhhHHHHHHHHHHHHhccCcCc----ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhch------h
Q 043255 13 KRLARKDPITKLKALSSLSALLKEKSGKD----IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGR------D 82 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~~~~~~~----l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK------~ 82 (1843)
-+|.=|+=-.|..|+++|..+++..+.+. ....+-.-...+.+...|..-.|.+.+-+++..++...+. .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 46777888899999999999998653221 1112223345666777899999999999999999986653 3
Q ss_pred hhhhhhhhhhhHhh-cccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHH
Q 043255 83 LAPHLKSLMGPWWF-SQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEE 161 (1843)
Q Consensus 83 lap~Lk~l~g~Wl~-~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~Ea 161 (1843)
..++...++|.-+. +..|+.+.+...|.+++..++... .- ...+++++...++ .
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~-------~~~~~e~l~~~l~-------~---------- 150 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TS-------ITQSVELVIPFFE-------K---------- 150 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SS-------SHHHHHHHGGGGG-------C----------
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-Cc-------HHHHHHHHHHHHh-------c----------
Confidence 34555666666554 467888888777777776443110 00 0123333332221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHH
Q 043255 162 MHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVL 241 (1843)
Q Consensus 162 KY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL 241 (1843)
|.-|+...++..|..++.... ..... .+ . ....++ +.+.+++.|.++.||.+...++
T Consensus 151 Knpkv~~~~l~~l~~~l~~fg--------~~~~~--~k-------~---~l~~i~---~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 151 KLPKLIAAAANCVYELMAAFG--------LTNVN--VQ-------T---FLPELL---KHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT--------TTTCC--HH-------H---HHHHHG---GGHHHHHTCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhC--------CCcCC--ch-------h---HHHHHH---HHHHHHHhCCcHHHHHHHHHHH
Confidence 123899999999999998761 11111 01 0 112233 2367788999999999999999
Q ss_pred HHHHhcC
Q 043255 242 KSYIKNI 248 (1843)
Q Consensus 242 ~tll~~~ 248 (1843)
.+++...
T Consensus 208 ~~ly~~~ 214 (278)
T 4ffb_C 208 VEIYKVT 214 (278)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9999865
No 87
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.52 E-value=0.57 Score=56.08 Aligned_cols=260 Identities=11% Similarity=0.008 Sum_probs=144.6
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhh---hHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh---ch
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIP---QWAFEYKRLLLDYSREVRRATHEMMTSLVITV---GR 81 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp---~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~---gK 81 (1843)
+...++.|.-.|+..|.+|++.|..++.......+..++. ..+.+...+.-+.+..||..+-.+++.+.... .+
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4456667777899999999999999876322222221221 12333344444448999999999999887521 12
Q ss_pred hhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHH
Q 043255 82 DLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEE 161 (1843)
Q Consensus 82 ~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~Ea 161 (1843)
.+. -...++.-+....|++..|...|..++...-.......+. +....++..+...++..+
T Consensus 102 ~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~~l~~~~--------------- 162 (450)
T 2jdq_A 102 IVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY--VLDCNILPPLLQLFSKQN--------------- 162 (450)
T ss_dssp HHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH--HHHTTCHHHHHHHTTSCC---------------
T ss_pred HHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH--HHHCCCHHHHHHHhcCCC---------------
Confidence 221 0234555555566789999999999998665442221121 223455666665553111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHH
Q 043255 162 MHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVL 241 (1843)
Q Consensus 162 KY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL 241 (1843)
..++...++.++..+.... +... . .. . ...++. .+-++++++++.||......|
T Consensus 163 -~~~v~~~a~~~L~~l~~~~--------~~~~--~-~~----~-------~~~~l~---~L~~~l~~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 163 -RLTMTRNAVWALSNLCRGK--------SPPP--E-FA----K-------VSPCLN---VLSWLLFVSDTDVLADACWAL 216 (450)
T ss_dssp -CHHHHHHHHHHHHHHHCCS--------SSCC--C-GG----G-------TGGGHH---HHHHHTTCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHhCCC--------CCCC--C-HH----H-------HHHHHH---HHHHHHccCCHHHHHHHHHHH
Confidence 0244555666666655211 0000 0 00 0 011111 244556788999999999999
Q ss_pred HHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHc
Q 043255 242 KSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKN 313 (1843)
Q Consensus 242 ~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~ 313 (1843)
..++...++....-....+.+.++..+.+.++.+......++-.+....++.-..+ ....++|.|.++|+.
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI-LNCSALQSLLHLLSS 287 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HTTTHHHHHHHHTTC
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHH-HHCccHHHHHHHHcC
Confidence 99887654321100001245666677887887777777777777766443321100 112356666666654
No 88
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.44 E-value=1.4 Score=52.53 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=119.1
Q ss_pred hcCChhhHHHHHHHHHHHHhccCcCcccchhh--hHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh--------------
Q 043255 16 ARKDPITKLKALSSLSALLKEKSGKDIAPIIP--QWAFEYKRLLLDYSREVRRATHEMMTSLVITV-------------- 79 (1843)
Q Consensus 16 ~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp--~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~-------------- 79 (1843)
...|+..|..|++-|..++... ++.+...++ .|..+. ...-|.+..||..+...+..++...
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLY-YQYMETYMGPALFAITI-EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHC-GGGCTTTTTTTHHHHHH-HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 3456778888888888887754 333333333 233332 3335889999999999988888652
Q ss_pred -------chhhhhhhhhhhhhHhhccc-------CCc---HHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHh
Q 043255 80 -------GRDLAPHLKSLMGPWWFSQF-------DSN---SEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENL 142 (1843)
Q Consensus 80 -------gK~lap~Lk~l~g~Wl~~~~-------D~~---~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~L 142 (1843)
.+.+.||++.++|.-+..+. |.+ |.+|..+...+...|+. .+...++.++...+
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---------~~~~~~~~~l~~~l 375 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---------DIVPHVLPFIKEHI 375 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---------THHHHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHh
Confidence 22345688888887654442 222 33444444444556652 12245666666555
Q ss_pred ccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhH
Q 043255 143 KLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYF 222 (1843)
Q Consensus 143 k~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~f 222 (1843)
+ +. .-|+.-+++.+++.+.+.. +.+.+.. ....++. .+
T Consensus 376 ~-------~~----------~~~~r~aal~~l~~l~~~~--------~~~~~~~--------------~l~~~~~---~l 413 (462)
T 1ibr_B 376 K-------NP----------DWRYRDAAVMAFGCILEGP--------EPSQLKP--------------LVIQAMP---TL 413 (462)
T ss_dssp T-------CS----------SHHHHHHHHHHHHHTSSSS--------CTTTTCT--------------TTTTHHH---HH
T ss_pred c-------CC----------ChHHHHHHHHHHHHHhcCC--------cHHHHHH--------------HHHHHHH---HH
Confidence 3 10 1467778888888766321 0011100 0112221 24
Q ss_pred HhhhccCChhHHHHHHHHHHHHHhcCCccc-ccchhhHHHHHHHcccC
Q 043255 223 LDFLKSQSVSIRSATYSVLKSYIKNIPHVF-NEGNLKIIATAILGAFQ 269 (1843)
Q Consensus 223 W~~~k~~~p~VR~A~y~LL~tll~~~p~~l-~~~~~k~i~~avl~~l~ 269 (1843)
-..++++.+.||.++...|..++...+..+ ...+++.+-+.++..|+
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 455677889999999999999999876544 34566777777776653
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.00 E-value=0.023 Score=56.22 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=34.7
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
-|++|--.+..- .+..+|+|.|-..|...|-+. +.++||.||.++
T Consensus 3 fC~~C~~Pi~iy------gRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVY------GRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEE------EEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred ecCccCCCeEEE------eeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence 377787766532 234589999999999999875 358999999874
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.62 E-value=14 Score=50.43 Aligned_cols=327 Identities=15% Similarity=0.098 Sum_probs=174.7
Q ss_pred ChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHhch-hhhhhhhhhhhhHh
Q 043255 19 DPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLL--DYSREVRRATHEMMTSLVITVGR-DLAPHLKSLMGPWW 95 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsi--D~~RrVRe~ah~~~~~l~~~~gK-~lap~Lk~l~g~Wl 95 (1843)
|...+-|...|...++..-.+++ +++.+.....+..- +.+.+.||++--++|.++..+.. ...|+++++|+. +
T Consensus 425 d~~~~f~~~Rd~L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~-L 500 (1023)
T 4hat_C 425 DTIQLYKSEREVLVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD-L 500 (1023)
T ss_dssp GGHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-H
Confidence 33466777777665554433322 45555554444333 36899999999999999987764 477999999997 5
Q ss_pred hccc------CCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHH
Q 043255 96 FSQF------DSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169 (1843)
Q Consensus 96 ~~~~------D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvss 169 (1843)
.++. |+...|+..+.-.+.+.-.=-++. +. +...+++++.+.+.++ +.||..+
T Consensus 501 l~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~-~L~~vl~~L~~~l~~~-----------------~~~v~~~ 559 (1023)
T 4hat_C 501 LDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WN-FLRTVILKLFEFMHET-----------------HEGVQDM 559 (1023)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HH-HHHHHHHHHHHHTTCS-----------------CHHHHHH
T ss_pred HHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HH-HHHHHHHHHHHHhhcC-----------------CHHHHHH
Confidence 5565 344445545544443210000000 11 1344555554433211 1367777
Q ss_pred HHHHHHHHHHHhhhccc-CCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC
Q 043255 170 SLLALATLLDVLVCEHF-GRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 170 SL~aL~~LL~~l~~~~~-~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~ 248 (1843)
|..++.++.+.-.. ++ ++...+. ++ .++.++.. +-.....-++.-+..+|+.++++++..
T Consensus 560 A~~al~~l~~~c~~-~l~~~~~~e~---~p------------~~~~il~~---l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 560 ACDTFIKIVQKCKY-HFVIQQPRES---EP------------FIQTIIRD---IQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHHHTH-HHHSCCTTCS---SC------------HHHHHHHT---HHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH-HhhccCCCCC---ch------------hHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 88888888766421 11 0000010 01 12233321 222233346777789999999999998
Q ss_pred CcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHH---ccCCCCCccchhh
Q 043255 249 PHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLK---NGCFGSQQVSYPA 325 (1843)
Q Consensus 249 p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr---~G~~Gsa~~~yp~ 325 (1843)
|... ........++.. ....|+.+..-.+..|+.|... ....+++..|| .-|.+.+..|+|.
T Consensus 621 ~~~~---~~~~~l~~L~~~--------~~~~~~~l~~~~~~~~~~~~d~----~~~~~l~~il~~~~~v~~~lg~~f~~~ 685 (1023)
T 4hat_C 621 RSVA---ERNRLLSDLMQL--------PNMAWDTIVEQSTANPTLLLDS----ETVKIIANIIKTNVAVCTSMGADFYPQ 685 (1023)
T ss_dssp CSHH---HHHHHHHHHTHH--------HHHHHHHHHHHHHHCTTGGGCH----HHHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CCHh---hHHHHHHHHHHh--------HHHHHHHHHHHHhcCchhhcCH----HHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 7422 122222222222 3556887776667789999643 34555666665 3455566777888
Q ss_pred HHHHhhhCCcCcCCChHHHHHHHHHH-Hh-hhcCCCCCcchHHHHHHHHHHHHHHHHhhccccCCCCcchhHHHHHHHHH
Q 043255 326 LVLFLDVVPPKAVAADKFFQDFFNSL-WA-GRNEPHSSNSDHKAFFRAFKECFLWGLLNASRYFDGVDSIFHFRVALVDD 403 (1843)
Q Consensus 326 LlplLs~iP~~vl~~~~f~~~ff~al-~~-Gl~~r~~s~s~~~a~~say~Ec~~~~l~~~~~~~~~~~s~~~~~~~ll~~ 403 (1843)
+-+....+ +.....+++..... .. |......+ .....-..-.|+++.+-.-+.+.. +. +.+...++..
T Consensus 686 ~~~i~~~~----l~~y~~~s~~i~~~~~~~g~~~~~~~--~~r~~r~ik~~il~l~~~~i~~~~---~~-~~~~~~~~~~ 755 (1023)
T 4hat_C 686 LGHIYYNM----LQLYRAVSSMISAQVAAEGLIATKTP--KVRGLRTIKKEILKLVETYISKAR---NL-DDVVKVLVEP 755 (1023)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHCGGGGGSH--HHHHHHHHHHHHHHHHHHHHHHCS---CH-HHHHHHTHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCchhhccH--HHHHHHHHHHHHHHHHHHHHhcCC---CH-HHHHHHhHHH
Confidence 77765554 33334555555432 22 43211111 123444555777777655554321 11 3444455554
Q ss_pred HHHHHHHHhhhh
Q 043255 404 ILLKLLWQDYLF 415 (1843)
Q Consensus 404 ~l~pliw~~~l~ 415 (1843)
.+-+++ .+|..
T Consensus 756 l~~~vl-~dY~~ 766 (1023)
T 4hat_C 756 LLNAVL-EDYMN 766 (1023)
T ss_dssp HHHHHH-HHHHH
T ss_pred HHHHHH-HHHHh
Confidence 444445 66663
No 91
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.52 Score=53.65 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=79.8
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchh-hhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc---hhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPII-PQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG---RDLAP 85 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iL-p~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g---K~lap 85 (1843)
.+|.++.=|.+.-+..|-..|.++++..++....+.+ ..+..++.-+. ...+.||+.+-.+++.++...+ +.+.|
T Consensus 108 ~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~~~~~~~~~l~~ 186 (249)
T 2qk1_A 108 PLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-HKTPQIRMECTQLFNASMKEEKDGYSTLQR 186 (249)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCCSCSHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 5566666555667777777788888765433222212 23456665543 3478999999999999999998 56999
Q ss_pred hh-hhhhhhHhhcccCCcHHHHHHHHHHHHh
Q 043255 86 HL-KSLMGPWWFSQFDSNSEVSQAAKRSLQA 115 (1843)
Q Consensus 86 ~L-k~l~g~Wl~~~~D~~~~VA~aA~~sf~~ 115 (1843)
|+ +.+||.-.-.+.|++++|-.+|.+++..
T Consensus 187 ~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999874
No 92
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.04 E-value=0.86 Score=56.59 Aligned_cols=257 Identities=9% Similarity=0.040 Sum_probs=142.0
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCc---c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---h
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKD---I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT---V 79 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~---l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~---~ 79 (1843)
+...++.|...|+..+..|+..|..++...+... + .+++|.-. .-|.-+.+..||..+-.+++.+... .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv---~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV---EFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHH---HTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHH---HHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4456667777889999999999999876432222 1 34444333 2232234899999999999888752 2
Q ss_pred chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhH
Q 043255 80 GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDEL 159 (1843)
Q Consensus 80 gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~ 159 (1843)
.+.+. -...+++-+..+.+++..|...|..++...-.......+.+ ....++..+.+.++.+ .
T Consensus 166 ~~~~~--~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~--~~~~~l~~L~~ll~~~---------~---- 228 (530)
T 1wa5_B 166 TKVVV--DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV--LQCNAMEPILGLFNSN---------K---- 228 (530)
T ss_dssp HHHHH--HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH--HHTTCHHHHHHGGGSC---------C----
T ss_pred HHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHH--HHcCcHHHHHHHhccC---------C----
Confidence 22221 01233444444446789999999999987765422222222 2235566666555321 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHH
Q 043255 160 EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYS 239 (1843)
Q Consensus 160 EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~ 239 (1843)
..+...++.+|..+...- .... .. .. ...++. .+-+++++.++.||..+..
T Consensus 229 ----~~v~~~a~~~L~~L~~~~---------~~~~--~~----~~-------~~~~l~---~L~~lL~~~d~~v~~~a~~ 279 (530)
T 1wa5_B 229 ----PSLIRTATWTLSNLCRGK---------KPQP--DW----SV-------VSQALP---TLAKLIYSMDTETLVDACW 279 (530)
T ss_dssp ----HHHHHHHHHHHHHHHCCS---------SSCC--CH----HH-------HGGGHH---HHHHHTTCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCC---------CCCC--cH----HH-------HHhHHH---HHHHHHcCCCHHHHHHHHH
Confidence 234555666666655210 0000 00 00 111221 2556678889999999999
Q ss_pred HHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHcc
Q 043255 240 VLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNG 314 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G 314 (1843)
.|..+....++....-.-..+.+.++..+.+.++.+......++-.+....++.-..+ ....++|.|.++|+.+
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV-INAGVLPALRLLLSSP 353 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHTTCS
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH-HHcchHHHHHHHHcCC
Confidence 9999987654322100001245666777777777777666666666665433211000 1123555555555543
No 93
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.23 E-value=6.2 Score=50.08 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=84.1
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcch
Q 043255 222 FLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQK 301 (1843)
Q Consensus 222 fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK 301 (1843)
+-+.+++++|.||+++...+..+++..|+.+.. ..+.+.+...+.|++++|....-.++-.+....|+.+ ....-.
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~ 201 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNP 201 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhccc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhccH
Confidence 556678999999999999999999988876632 2466777789999999999999999988888888753 122334
Q ss_pred hhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhh
Q 043255 302 TILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGR 355 (1843)
Q Consensus 302 ~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl 355 (1843)
..+++|.+.|... .+-.--.++-+++.+.+. .+.....+++.+..-+
T Consensus 202 ~~~~~Ll~~l~~~----~~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 202 QNINKLLTALNEC----TEWGQIFILDCLSNYNPK---DDREAQSICERVTPRL 248 (591)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCC----CchHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHH
Confidence 5677777777642 111223555666666543 2334455555554433
No 94
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.01 E-value=4.2 Score=44.20 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=135.6
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCc---c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---h
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKD---I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT---V 79 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~---l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~---~ 79 (1843)
+...++.|...|+-.+..|+..|..+....+ +. + .++++.- -++.-+.+..||+.+-.+++.+... .
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L----~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVL----VKLLTSTDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHH----HHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHH----HHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 4566777778888899999999999886542 11 1 2333332 2445577899999999999988743 2
Q ss_pred chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhH
Q 043255 80 GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDEL 159 (1843)
Q Consensus 80 gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~ 159 (1843)
++.+.. ...+++-+.-+.|++..+...|..++...-........ .+.....+..+.+.++.+ +
T Consensus 79 ~~~~~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~~l~~~-----------~-- 141 (252)
T 4hxt_A 79 IKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--AIVDAGGVEVLVKLLTST-----------D-- 141 (252)
T ss_dssp HHHHHH--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHHHHHHTTCS-----------C--
T ss_pred HHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHHHHHHHcCC-----------C--
Confidence 222211 12344444445588999999999999988743222222 233345666666555310 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHH
Q 043255 160 EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYS 239 (1843)
Q Consensus 160 EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~ 239 (1843)
.++...++.+|..+.... + ..+...+. ...+ +.+-++++++++.||.....
T Consensus 142 ----~~~~~~a~~~L~~l~~~~----------~----------~~~~~~~~--~~~i---~~L~~ll~~~~~~v~~~a~~ 192 (252)
T 4hxt_A 142 ----SEVQKEAARALANIASGP----------D----------EAIKAIVD--AGGV---EVLVKLLTSTDSEVQKEAAR 192 (252)
T ss_dssp ----HHHHHHHHHHHHHHTTSC----------H----------HHHHHHHH--TTHH---HHHHHHTTCSCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCC----------H----------HHHHHHHH--CcCH---HHHHHHHCCCCHHHHHHHHH
Confidence 245666777777654210 0 00001110 0111 23566778889999999999
Q ss_pred HHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcC
Q 043255 240 VLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRF 290 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~ 290 (1843)
.|..++...|.....-.-..+.+.++..+.+.++.+....-.++-.+....
T Consensus 193 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 193 ALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 999998754432100000113355556677777666666666666665543
No 95
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.94 E-value=1.3 Score=53.07 Aligned_cols=227 Identities=14% Similarity=0.093 Sum_probs=129.7
Q ss_pred hhhcCChhhHHHHHHHHHHHHhccCc--Ccc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh-chhhhhhhh
Q 043255 14 RLARKDPITKLKALSSLSALLKEKSG--KDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV-GRDLAPHLK 88 (1843)
Q Consensus 14 kL~KKD~tTK~KALqeL~~lv~~~~~--~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~-gK~lap~Lk 88 (1843)
-|...|+..|..|+.-|..+....+. +.+ .++++...++. .-|.+..||+.+-.+++.+.... .+.-.....
T Consensus 115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 191 (450)
T 2jdq_A 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF---SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT---TSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTG
T ss_pred HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh---cCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33445677888888888887654311 111 34555444432 22578999999999999988533 111123345
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVIS 168 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvs 168 (1843)
.++++-+..+.|.+..+...|..++...-........ .+....++..+.+.++ .+ + .++..
T Consensus 192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~ll~-~~----------~------~~v~~ 252 (450)
T 2jdq_A 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ--AVIDAGVCRRLVELLM-HN----------D------YKVVS 252 (450)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHH--HHHHTTTHHHHHHHTT-CS----------C------HHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHH--HHHHcCcHHHHHHHHC-CC----------c------hhHHH
Confidence 6666666667789999999999999877654222222 2223445555555542 11 1 25666
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC
Q 043255 169 SSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 169 sSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~ 248 (1843)
.++.+++.+.... +. .....+. ..++ +.+-+++++.++.||++....|..+....
T Consensus 253 ~a~~~L~~l~~~~----------~~----------~~~~~~~--~~~l---~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 253 PALRAVGNIVTGD----------DI----------QTQVILN--CSAL---QSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp HHHHHHHHHTTSC----------HH----------HHHHHHT--TTHH---HHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCC----------hH----------HHHHHHH--CccH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 7777777665211 00 0000110 0112 23566778889999999999999988654
Q ss_pred Ccccccchh-hHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 249 PHVFNEGNL-KIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 249 p~~l~~~~~-k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
+..... -+ ..+.+.++..+.+.++.+....-.++-.+..
T Consensus 308 ~~~~~~-~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 308 RAQIQT-VIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHH-HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 332210 00 1244555566666666555554445555544
No 96
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.17 E-value=2.8 Score=51.90 Aligned_cols=257 Identities=9% Similarity=0.051 Sum_probs=144.9
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCc---c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh---
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKD---I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV--- 79 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~---l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~--- 79 (1843)
+...++.|...|+..+..|+..|..++...+... + .+++|.-..+ |.-+++..||+.|-.+++.+....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~l---L~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQF---LTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHH---HTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 5567788888899999999999999876432122 1 3455444432 333445999999999999988632
Q ss_pred chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhH
Q 043255 80 GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDEL 159 (1843)
Q Consensus 80 gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~ 159 (1843)
++.+.. ...+++-+..+.|++..|...|..++...-.......+. +....++..+...++.++ +
T Consensus 153 ~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~--i~~~g~l~~Ll~lL~~~~--------~---- 216 (528)
T 4b8j_A 153 TKVVID--HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL--VLANGALLPLLAQLNEHT--------K---- 216 (528)
T ss_dssp HHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH--HHHTTCHHHHHHTCCTTC--------C----
T ss_pred HHHHHh--CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH--HHHCCcHHHHHHHHhcCC--------C----
Confidence 222221 135555555566789999999999988664332111111 112234444444332111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHH
Q 043255 160 EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYS 239 (1843)
Q Consensus 160 EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~ 239 (1843)
.++...++.+|..+...- .. .. ..... .++ +.+-+++++.++.||..+..
T Consensus 217 ----~~v~~~a~~~L~~L~~~~----------~~----~~--~~~~~-------~~l---~~L~~lL~~~~~~v~~~a~~ 266 (528)
T 4b8j_A 217 ----LSMLRNATWTLSNFCRGK----------PQ----PS--FEQTR-------PAL---PALARLIHSNDEEVLTDACW 266 (528)
T ss_dssp ----HHHHHHHHHHHHHHHCSS----------SC----CC--HHHHT-------THH---HHHHHHTTCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCC----------CC----Cc--HHHHH-------HHH---HHHHHHHCCCCHHHHHHHHH
Confidence 245555666666655211 00 00 00011 111 12455678889999999999
Q ss_pred HHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHHcc
Q 043255 240 VLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLKNG 314 (1843)
Q Consensus 240 LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr~G 314 (1843)
.|..+....+.....-.-..+.+.++..+.+.++.+......++-.+....++.-.. -....++|.|.++|+++
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~-~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC-IIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH-HHTTTHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH-HHHhhhHHHHHHHHcCC
Confidence 999888654322100000114556667788777777777666766666533321110 01234677777777754
No 97
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.73 E-value=9.9 Score=50.84 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=122.2
Q ss_pred HHHHHHhhhc--CChhhHHHHHHHHHHHHhcc--CcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhh
Q 043255 8 VAQHLKRLAR--KDPITKLKALSSLSALLKEK--SGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDL 83 (1843)
Q Consensus 8 v~v~lKkL~K--KD~tTK~KALqeL~~lv~~~--~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~l 83 (1843)
+...|-.+.. .++.-|..|+.-+..+..-- ..+-+..+| +.++..+ | .+||..|..++..+...+++.+
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl---~~l~~~l--~--~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAI---NLLVRGL--N--SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHH---HHHHHHH--H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHh--C--hHHHHHHHHHHHHHHHHHHHhc
Confidence 3335555552 37778888888777655421 122334344 4555555 4 7899999999999999999999
Q ss_pred hhhhhhhhhhHhhcccC--CcHHHHHHHHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhh
Q 043255 84 APHLKSLMGPWWFSQFD--SNSEVSQAAKRSLQAA---FPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDE 158 (1843)
Q Consensus 84 ap~Lk~l~g~Wl~~~~D--~~~~VA~aA~~sf~~~---Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE 158 (1843)
.||++.+|..-+...-. .+..+-..+.+++..+ .| .+++...+.-.-..++..+...++... .++++
T Consensus 579 ~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~-------~~~~~ 650 (971)
T 2x1g_F 579 KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADS-------KTPAA 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC----------CHHH
T ss_pred cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCC-------CChhh
Confidence 99999999876543333 4566666777776644 45 345555444333444444433332111 02221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHH
Q 043255 159 LEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATY 238 (1843)
Q Consensus 159 ~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y 238 (1843)
..-+..++..++.++..+.+ .......+....+.- ......+.+....++. . ..+++.|+++++
T Consensus 651 -----~~~~~~~l~~L~~~~~~l~~-~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~l~------~--~~~~~~v~e~~~ 714 (971)
T 2x1g_F 651 -----RIRTIFRLNMISTLFSSLNT-DVDEQATDQPIVQPV--LLVMQRTMPIFKRIAE------M--WVEEIDVLEAAC 714 (971)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTC--------------CC--HHHHHTTHHHHHHHHH------H--TTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhcCC-CcCcccccccCCCch--HHHHHHHHHHHHHHHH------h--ccccHHHHHHHH
Confidence 23344567777777766521 000000000000000 0000111111111111 0 124778999999
Q ss_pred HHHHHHHhcCCcccccchhhHHHHHHHcccCCCC
Q 043255 239 SVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKD 272 (1843)
Q Consensus 239 ~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d 272 (1843)
.+++.++......+.+ .+..+.+.++..+...+
T Consensus 715 ~~~~~~~~~~~~~~~p-~l~~~~~~l~~~~~~~~ 747 (971)
T 2x1g_F 715 SAMKHAITNLRSSFQP-MLQDLCLFIVASFQTRC 747 (971)
T ss_dssp HHHHHHHHHHHC--CT-HHHHHHHHHHHHCC--C
T ss_pred HHHHHHHHhhhhhccc-cHHHHHHHHHHHHhcCC
Confidence 9999977764333432 46667777776665543
No 98
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.30 E-value=1.5 Score=48.76 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhch--hhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGR--DLAPHL 87 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK--~lap~L 87 (1843)
.++++|.-+++.+|..|.+-|.+++...+ +..++| .+...+. |.+.+||+.+-..++.++...+. ...+|+
T Consensus 102 ~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~---~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 102 SLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQE---SIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHH---HHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHH---HHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 56777777888899999999999987542 333443 3444443 67899999999999999988763 467999
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
+.+++.-+..+.|+++.|..+|.+++..+
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999988743
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.72 E-value=36 Score=45.29 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHh---ccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043255 11 HLKRLARKDPITKLKALSSLSALLK---EKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL 87 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~---~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L 87 (1843)
.+-.+...++.-|..|+.-+..+.. .. .+-+..+++ .++..+ + +++||..|-.++..++..+++.+.||+
T Consensus 494 ~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~---~l~~~l--~-~~~V~~~A~~al~~l~~~~~~~l~p~~ 566 (963)
T 2x19_B 494 LIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLP---LVLHAL--G-NPELSVSSVSTLKKICRECKYDLPPYA 566 (963)
T ss_dssp HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHH---HHHHHT--T-CGGGHHHHHHHHHHHHHHTGGGCTTTH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHH---HHHHHh--C-CchHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444554456667777776665543 22 222344443 444444 2 289999999999999999999999999
Q ss_pred hhhhhhHhhccc--CCcHHHHHHHHHHHHhhCCC--hhhHHHHHHHHHHHHHHHHHHHhc
Q 043255 88 KSLMGPWWFSQF--DSNSEVSQAAKRSLQAAFPA--QEKRLDALLICATEVFIYLEENLK 143 (1843)
Q Consensus 88 k~l~g~Wl~~~~--D~~~~VA~aA~~sf~~~Fp~--~eKr~~a~~~cq~eIl~~~~d~Lk 143 (1843)
+.++..-....- +.+..+-..+.+++..+... .+++ .-+-..++..+...++
T Consensus 567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~----~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI----LKNLHSLISPYIQQLE 622 (963)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHHHH
Confidence 999987654333 34566677777777655432 2333 3344566666655553
No 100
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.61 E-value=25 Score=45.13 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=85.5
Q ss_pred HHhhhc-cCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcc
Q 043255 222 FLDFLK-SQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQ 300 (1843)
Q Consensus 222 fW~~~k-~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~k 300 (1843)
|-..++ ++++.||+...+++..++.. .|++.|...++..+.+.|......+-.++-.+..+||...
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------ 439 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------ 439 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------
Confidence 444556 88999999999998887643 4677788888888888888888888899998988887533
Q ss_pred hhhhHHHHHHHHccCCCCCccchhhHHHHhhhCCcCcCCChHHHHHHHHHH
Q 043255 301 KTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSL 351 (1843)
Q Consensus 301 K~~lprL~~~Lr~G~~Gsa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al 351 (1843)
...+.-|.++|+.++.-....++..+..++...|.- .......+++.+
T Consensus 440 ~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l 487 (621)
T 2vgl_A 440 TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEAL 487 (621)
T ss_dssp HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHH
Confidence 347888999999876657777888889888877642 122344555544
No 101
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.59 E-value=5.9 Score=50.33 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=60.7
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhhhhhhhh
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRD-LAPHLKSLMGP 93 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~-lap~Lk~l~g~ 93 (1843)
|.=+|+..|.||...+..++... ++.+.. +.|.....++.-|.+..||..|-.+++.+...-.+. ..+..+..+..
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~~-p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~ 206 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDIN-AQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 206 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHSS-CCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhhC-hhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHH
Confidence 34567778888888888877643 333221 247666666667999999999999998887644322 11111222222
Q ss_pred HhhcccCCcHHHHHHHHHHHHhhCCC
Q 043255 94 WWFSQFDSNSEVSQAAKRSLQAAFPA 119 (1843)
Q Consensus 94 Wl~~~~D~~~~VA~aA~~sf~~~Fp~ 119 (1843)
-+....|.++-+.....+.+...-|.
T Consensus 207 Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 207 LLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred HHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 22222345555555666677666554
No 102
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=89.05 E-value=6.3 Score=43.30 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=131.6
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCc---c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh-
Q 043255 6 SEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKD---I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV- 79 (1843)
Q Consensus 6 ~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~---l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~- 79 (1843)
.++--.+++|.-.|+-.+..|+..|..++... .+. + .+.+|. .-++.-+.+..||+.+-.+++.+....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~----L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPA----LVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHH----HHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHH----HHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 34566788899999999999999998766542 211 1 233332 223444677999999999999888521
Q ss_pred --chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChh
Q 043255 80 --GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALD 157 (1843)
Q Consensus 80 --gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~E 157 (1843)
++.+.. ...+++-+.-+.+++..+...|..++...-..++.+.. .+....++..+.+.++. +
T Consensus 87 ~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~lL~~-~----------- 150 (252)
T 4db8_A 87 EQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALVQLLSS-P----------- 150 (252)
T ss_dssp HHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHHHHHGGGC-S-----------
T ss_pred HHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH--HHHHCCCHHHHHHHHhC-C-----------
Confidence 222211 02444444445567899999999999887665433312 23345566666665531 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHH
Q 043255 158 ELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSAT 237 (1843)
Q Consensus 158 E~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~ 237 (1843)
..++...++.+|..+...- .+ .+...+. ...+ +.+-.+++++++.||...
T Consensus 151 -----~~~v~~~a~~~L~~l~~~~---------~~-----------~~~~~~~--~~~i---~~L~~ll~~~~~~v~~~a 200 (252)
T 4db8_A 151 -----NEQILQEALWALSNIASGG---------NE-----------QIQAVID--AGAL---PALVQLLSSPNEQILQEA 200 (252)
T ss_dssp -----CHHHHHHHHHHHHHHTTSC---------HH-----------HHHHHHH--TTCH---HHHHHGGGCSSHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCC---------hH-----------HHHHHHH--CCCH---HHHHHHHCCCCHHHHHHH
Confidence 0255666777777655210 00 0000110 0111 235566788899999999
Q ss_pred HHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHH
Q 043255 238 YSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAI 283 (1843)
Q Consensus 238 y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWeal 283 (1843)
...|..++...|+....-.-..+.+.++..+.+.++.+....-.++
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999865543211000011345555777766665544433333
No 103
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=89.03 E-value=2.7 Score=42.92 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCceEEEEec---cccEEEEEEEe-----c---CCceEEEEecCCCCCCCcceEeeccccccCHHH
Q 043255 1685 IANELSQIKKANIADENFSLTVSK---SANEVVATYTK-----D---ETKMDLIIRLPASYPLRPVDVECMRSLGISEVK 1753 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~---~~~EV~a~Y~i-----d---e~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k 1753 (1843)
..+|++.++.. | .+++.+.-.. ..+.+...... + ...+.+.|++|++||-.++.+......|++..+
T Consensus 13 ~~~EleaL~SI-Y-~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~~ 90 (128)
T 2day_A 13 LPSEVEVLESI-Y-LDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQ 90 (128)
T ss_dssp HHHHHHHHHHH-S-TTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHHH
T ss_pred HHHHHHHHHHH-C-CCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHHH
Confidence 56888888765 3 2445543211 12333333321 1 135788999999999999999887777888777
Q ss_pred HHHHHHHHHHHHHhcccc--HHHHHHHHHHhccc
Q 043255 1754 QRKWLMSMMLFVRNQNGA--LAEAIRIWKRNFDK 1785 (1843)
Q Consensus 1754 ~r~Wll~~~~~i~~qnGs--i~d~l~~~k~nv~~ 1785 (1843)
.......+.....-.-|. |.+-+..-+.++..
T Consensus 91 ~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 124 (128)
T 2day_A 91 IHTILQVLGHVAKAGLGTAMLYELIEKGKEILSG 124 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 766666665554433343 45544444555443
No 104
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=87.13 E-value=2.4 Score=45.08 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=54.3
Q ss_pred EEEEEEEecCC--ceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcc-cc--HHHHHHHHHHhcccc
Q 043255 1712 EVVATYTKDET--KMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQN-GA--LAEAIRIWKRNFDKE 1786 (1843)
Q Consensus 1712 EV~a~Y~ide~--~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qn-Gs--i~d~l~~~k~nv~~~ 1786 (1843)
+.+....+++. ++.+.|++|.+||-.++.+..... +.+......+...+..++...+ |. |...+...|.|+...
T Consensus 63 ~~~i~l~~~~~~~~i~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~ 141 (154)
T 2daw_A 63 EFVITLQIEEPKVKIDLQVTMPHSYPYLALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASY 141 (154)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSTTSSCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHH
T ss_pred EEEEEEecCCCCceEEEEEEcCCCCCCCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44444445554 689999999999999988875443 7777666666666777775443 65 777777778787766
Q ss_pred cCCC
Q 043255 1787 FEGV 1790 (1843)
Q Consensus 1787 ~~g~ 1790 (1843)
++..
T Consensus 142 l~~~ 145 (154)
T 2daw_A 142 FLNR 145 (154)
T ss_dssp HCCC
T ss_pred HhCc
Confidence 5544
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.16 E-value=3.2 Score=56.07 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=94.7
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL 87 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L 87 (1843)
+-.+|..+.-|+..-|.-|-....++++.-+++.+..+|| .++.-+....-...+..+-.+++.|+..+...++..|
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~ 173 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLP---HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM 173 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 3467888899999999999999999999888888887776 4555555555789999999999999999999999999
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhCC
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAFP 118 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp 118 (1843)
+.++|.---+|+|+.++|+.+|+.++.++..
T Consensus 174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 174 PELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred cchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986654
No 106
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.98 E-value=3.6 Score=42.00 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCCceEEEEeccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccccccCHHHHHHHH
Q 043255 1685 IANELSQIKKANIADENFSLTVSKSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWL 1758 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wl 1758 (1843)
-.+|++.++.. +. +.+.+ ++.....+......+ ...+.+.|++|++||-.++.+......|++........
T Consensus 15 q~~EleaL~sI-y~-d~~~~-~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~L~ 91 (128)
T 2ebm_A 15 QRNELEALESI-YP-DSFTV-LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDIL 91 (128)
T ss_dssp HHHHHHHHHHH-CS-SSEEE-CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHH-cc-CceEE-ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHHHH
Confidence 46788888764 32 34443 121122232222211 23678999999999999998887655688876666666
Q ss_pred HHHHHHHHhcccc--HHHHHHHHHHhc
Q 043255 1759 MSMMLFVRNQNGA--LAEAIRIWKRNF 1783 (1843)
Q Consensus 1759 l~~~~~i~~qnGs--i~d~l~~~k~nv 1783 (1843)
..+.....-.-|. |.+-+..-+.++
T Consensus 92 ~~L~~~~~e~~G~~mif~lv~~lqe~l 118 (128)
T 2ebm_A 92 KLLALQAEENLGMVMIFTLVTAVQEKL 118 (128)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEHHHHHHHHHHHH
Confidence 6665555322343 444444444443
No 107
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=84.79 E-value=2.7 Score=43.40 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=42.9
Q ss_pred CceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHhcccc
Q 043255 1722 TKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGA--LAEAIRIWKRNFDKE 1786 (1843)
Q Consensus 1722 ~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGs--i~d~l~~~k~nv~~~ 1786 (1843)
..+.+.|++|++||-.++.|...+..|++..+.......+.....-.-|. |.+-+..-+.++...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 129 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEH 129 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 35789999999999999888776666777666665555555544332343 555555556565543
No 108
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=84.61 E-value=7 Score=48.28 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=124.6
Q ss_pred cCChhhHHHHHHHHHHHHhccCc--Ccc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhh
Q 043255 17 RKDPITKLKALSSLSALLKEKSG--KDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMG 92 (1843)
Q Consensus 17 KKD~tTK~KALqeL~~lv~~~~~--~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g 92 (1843)
..|+..|..|+.-|..++...+. +.+ .++++. +..-+.-+.+..||..+-.++..|.......-......+++
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~---Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLP---LLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHH---HHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHH---HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 34566677777777666543211 011 223333 33333357899999999999988876432222234455666
Q ss_pred hHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHH
Q 043255 93 PWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLL 172 (1843)
Q Consensus 93 ~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~ 172 (1843)
+-+..+.+++..|...|..++...-.....+.+. +....++..+...|+.+ + ..+...++.
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~g~v~~Lv~lL~~~-----------~------~~v~~~a~~ 308 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA--VIEAGVCPRLVELLLHP-----------S------PSVLIPALR 308 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH--HHHTTCHHHHHHHTTCS-----------C------HHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH--HHHcCHHHHHHHHHcCC-----------C------hhHHHHHHH
Confidence 6666678999999999999998776554333222 23335555665555211 1 145666777
Q ss_pred HHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccC-ChhHHHHHHHHHHHHHhcCCcc
Q 043255 173 ALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQ-SVSIRSATYSVLKSYIKNIPHV 251 (1843)
Q Consensus 173 aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~-~p~VR~A~y~LL~tll~~~p~~ 251 (1843)
+|+.+.... + ......+. ..++ +.+-.++++. ++.||+.+...|..+....+..
T Consensus 309 ~L~nl~~~~----------~----------~~~~~~~~--~~~l---~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~ 363 (528)
T 4b8j_A 309 TVGNIVTGD----------D----------AQTQCIID--HQAL---PCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ 363 (528)
T ss_dssp HHHHHTTSC----------H----------HHHHHHHT--TTHH---HHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCC----------H----------HHHHHHHH--hhhH---HHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHH
Confidence 777665210 0 00011110 0111 2356667788 9999999999999988754322
Q ss_pred cccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 252 FNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 252 l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
+..-.-..+.+.++..+.+.++.+....-.++-.+..
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 1100000123444555555565555555555555554
No 109
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.37 E-value=10 Score=48.58 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=65.4
Q ss_pred hHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcc
Q 043255 221 YFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQ 300 (1843)
Q Consensus 221 ~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~k 300 (1843)
.+-+|+...++.+|+.+...|..++.+.+... ...-+.++..+.+...-+..+.|.++..+.+++|+ .+
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~------l~ 457 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE------MH 457 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS------TH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh------HH
Confidence 37778888999999999999999999875433 33445666667666666778899999999999885 35
Q ss_pred hhhhHHHHHHHHcc
Q 043255 301 KTILNRFWHFLKNG 314 (1843)
Q Consensus 301 K~~lprL~~~Lr~G 314 (1843)
...+++|+.+|...
T Consensus 458 ~~~v~~L~~~l~~~ 471 (618)
T 1w63_A 458 AYTVQRLYKAILGD 471 (618)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 66889999999864
No 110
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=83.73 E-value=33 Score=42.40 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=125.7
Q ss_pred HhhhcCChhhHHHHHHHHHHHHhcc-CcCc---ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 13 KRLARKDPITKLKALSSLSALLKEK-SGKD---IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~~~-~~~~---l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
+-|...|+..+..|+.-|..++... +... ..+++|.-. ++.-+.+..||..+-.+++.|.......+...+.
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~----~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~ 297 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA----KLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH----HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH----HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3344467778888999999888654 2111 234444332 3445788999999999999988533222222222
Q ss_pred -hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHH
Q 043255 89 -SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVI 167 (1843)
Q Consensus 89 -~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVv 167 (1843)
.+++.-+..+.|++..|...|..++...-......... +....++..+...|+.. . .++.
T Consensus 298 ~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~lL~~~---------~--------~~vr 358 (530)
T 1wa5_B 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV--VINAGVLPALRLLLSSP---------K--------ENIK 358 (530)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTHHHHHHHHTTCS---------C--------HHHH
T ss_pred cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHH--HHHcchHHHHHHHHcCC---------C--------HHHH
Confidence 34444445556889999999999998877554333332 23345666666555211 0 2445
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 168 SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
..++.+|+.+.... .+ .....+. ..++ +.+-.+++++++.||+.+...|..++..
T Consensus 359 ~~A~~aL~~l~~~~---------~~-----------~~~~~~~--~~~l---~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 359 KEACWTISNITAGN---------TE-----------QIQAVID--ANLI---PPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHTTSC---------HH-----------HHHHHHH--TTCH---HHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---------HH-----------HHHHHHH--CCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 55666666544210 00 0000110 0111 1244556778999999999999999876
Q ss_pred CCcccccchhhH-----HHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 248 IPHVFNEGNLKI-----IATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 248 ~p~~l~~~~~k~-----i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
.... +++.+. +-+.++..+.+.++.+....-.++-.+..
T Consensus 414 ~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 414 GLQR--PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp TTTC--THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3210 011111 23444455555565555555555555443
No 111
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=83.61 E-value=7.8 Score=49.79 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=103.5
Q ss_pred hchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhh
Q 043255 79 VGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDE 158 (1843)
Q Consensus 79 ~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE 158 (1843)
.|..+......++. .+-.++-..-+.+.-++...+.++ .+.. ..+...++. |
T Consensus 68 ~G~d~s~~~~~vvk----l~~s~~~~~Krl~YL~l~~~~~~~---~e~~--------~L~iN~l~k-------------D 119 (621)
T 2vgl_A 68 LGHDIDFGHMEAVN----LLSSNRYTEKQIGYLFISVLVNSN---SELI--------RLINNAIKN-------------D 119 (621)
T ss_dssp HSCCCCSCHHHHHH----GGGCSCHHHHHHHHHHHHHSCCCC---HHHH--------HHHHHHHHH-------------H
T ss_pred cCCCCchhHHHHHH----HhcCCCHHHHHHHHHHHHHHccCC---cHHH--------HHHHHHHHH-------------h
Confidence 57766665555555 223466777888888888777653 1222 222222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhh--ccCChhHHHH
Q 043255 159 LEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFL--KSQSVSIRSA 236 (1843)
Q Consensus 159 ~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~--k~~~p~VR~A 236 (1843)
......-+.+.||.+++.+... + ..+.+.. ..-+.+ .+.+|.||+.
T Consensus 120 l~~~n~~ir~lALr~L~~i~~~-----------e------------------~~~~l~~---~v~~~l~~~d~~~~VRK~ 167 (621)
T 2vgl_A 120 LASRNPTFMGLALHCIANVGSR-----------E------------------MAEAFAG---EIPKILVAGDTMDSVKQS 167 (621)
T ss_dssp HHSCCHHHHHHHHHHHHHHCCH-----------H------------------HHHHHTT---HHHHHHHCSSSCHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhccCCH-----------H------------------HHHHHHH---HHHHHHhCCCCCHHHHHH
Confidence 1111124567888888875310 0 1223322 255667 7899999999
Q ss_pred HHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhhHHHHHHHH
Q 043255 237 TYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTILNRFWHFLK 312 (1843)
Q Consensus 237 ~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~lprL~~~Lr 312 (1843)
+.-.+..+++..|+.+... .+...+...|+|++|+|..+.-.++..+.+..|+.|. ...|++.+.|+
T Consensus 168 A~~al~kl~~~~p~~~~~~---~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~------~~~~~~~~~L~ 234 (621)
T 2vgl_A 168 AALCLLRLYRTSPDLVPMG---DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK------TSVSLAVSRLS 234 (621)
T ss_dssp HHHHHHHHHHHCGGGCCCC---SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT------THHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcCch---hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHH
Confidence 9999999999999877531 2445555778999999999988888888888887653 35555555554
No 112
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=83.48 E-value=26 Score=39.73 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhhh-----hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC---hhhHHHHHHHH
Q 043255 59 DYSREVRRATHEMMTSLVITVGRDLAP-----HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA---QEKRLDALLIC 130 (1843)
Q Consensus 59 D~~RrVRe~ah~~~~~l~~~~gK~lap-----~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~---~eKr~~a~~~c 130 (1843)
+-..++|..+-.-+..++....+...+ .+..+.+.|--.+.|+...|...|.+++...... ..........+
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~ 99 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITL 99 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Confidence 778999999998888888766554432 3556778888888999999999999998765432 11112223344
Q ss_pred HHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhh
Q 043255 131 ATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVS 210 (1843)
Q Consensus 131 q~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~ 210 (1843)
...++..+.+- .|+|.. .++...++.++..++.....
T Consensus 100 ~~~~l~~lveK------~l~~~k----------~~~~~~a~~~l~~~~~~~~~--------------------------- 136 (278)
T 4ffb_C 100 ISTWTPLLVEK------GLTSSR----------ATTKTQSMSCILSLCGLDTS--------------------------- 136 (278)
T ss_dssp HHHHHHHHHHH------TSSCCC----------HHHHHHHHHHHHHHHHTSSS---------------------------
T ss_pred HHHHHHHHHHH------HhcCcc----------HHHHHHHHHHHHHHHHhcCc---------------------------
Confidence 45555555432 112110 36666677777666643200
Q ss_pred hhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC-Cccccc-chhhHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 211 FSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI-PHVFNE-GNLKIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 211 ~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~-p~~l~~-~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
.+.++. .+...++|+.|.||.+....|..++... +..++. ..++.+.+.+...+.++++.|-..--+++..+-+
T Consensus 137 -~~~~~e---~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 -ITQSVE---LVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp -SHHHHH---HHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHH---HHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 011111 2445678999999999999999999863 233322 1123344445577899999999988888888776
Q ss_pred cCC
Q 043255 289 RFP 291 (1843)
Q Consensus 289 ~~P 291 (1843)
...
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 553
No 113
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=83.21 E-value=7.6 Score=40.08 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=41.9
Q ss_pred CceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHhc
Q 043255 1722 TKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGA--LAEAIRIWKRNF 1783 (1843)
Q Consensus 1722 ~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGs--i~d~l~~~k~nv 1783 (1843)
..+.+.|++|++||-.++.|......|++..+.......+.....-.-|. |.+.+..-+.++
T Consensus 62 ~~~~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l 125 (138)
T 2yz0_A 62 SSITLHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKL 125 (138)
T ss_dssp CEEEEEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHH
Confidence 46789999999999999999887667888766666666665554433343 444444444443
No 114
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.40 E-value=13 Score=46.43 Aligned_cols=236 Identities=12% Similarity=0.067 Sum_probs=133.3
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCc---Ccc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc--
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSG---KDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG-- 80 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~---~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g-- 80 (1843)
+....+.+.-.|+.++..|++.|..++..... +.+ .|++|.-+++ |.-++++.++..|-.++..|+...-
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~l---L~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF---LGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHH---HTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 55677888889999999999999988753322 223 5666655553 3446778999999889888875221
Q ss_pred -hhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhh
Q 043255 81 -RDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFP-AQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDE 158 (1843)
Q Consensus 81 -K~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp-~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE 158 (1843)
+.+.. ...+|+-+.-..+++..|...|..++...=. .++-|..+ ....++..+...|+... .+.
T Consensus 155 ~~~vv~--~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i---~~~g~i~~Ll~lL~~~~---------~~~ 220 (529)
T 3tpo_A 155 TKAVVD--GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV---IKHGAIDPLLALLAVPD---------LST 220 (529)
T ss_dssp HHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH---HHTTCHHHHHHTTCSSC---------GGG
T ss_pred HHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHH---HHcCCcHHHHHHHhccc---------hhH
Confidence 22221 1244444555677889999999988876533 22223222 22334444444442110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHH
Q 043255 159 LEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATY 238 (1843)
Q Consensus 159 ~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y 238 (1843)
......|.++.+|..+.. . .+... .. . ....++. .+.++++++++.|+....
T Consensus 221 ~~~~~~~~a~~~L~nl~~---~----------~~~~~--~~---~-------~~~~~lp---~L~~LL~~~~~~v~~~a~ 272 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCR---N----------KNPAP--PL---D-------AVEQILP---TLVRLLHHNDPEVLADSC 272 (529)
T ss_dssp SCHHHHHHHHHHHHHHHC---C----------CTTCC--CH---H-------HHHHHHH---HHHHHTTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh---c----------ccchh--hH---H-------HHhhHHH---HHHHHhcCCcHHHHHHHH
Confidence 122234444444433221 0 00000 00 0 1112222 367788999999999999
Q ss_pred HHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 239 SVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 239 ~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
..|..+....++....-.-.-+.+.++..+...++.+......++-.+..
T Consensus 273 ~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 273 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 99988887543211000001134556677777787777777777766654
No 115
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.15 E-value=4 Score=41.69 Aligned_cols=98 Identities=11% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCC-CCceEEEEecc--ccEEEEEEEec-----CCceEEEEecCCCCCCCcceEeeccccccCHHHHHH
Q 043255 1685 IANELSQIKKANIA-DENFSLTVSKS--ANEVVATYTKD-----ETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRK 1756 (1843)
Q Consensus 1685 i~~el~~v~~~~~~-~~~~~Vkv~~~--~~EV~a~Y~id-----e~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~ 1756 (1843)
-.+|++.++.. +. +++|.+.-... .+.+......+ +..+.+.|++|++||-.++.+... ..|++..+...
T Consensus 12 q~~EleaL~SI-y~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~~~~~~ 89 (128)
T 2ebk_A 12 VQEELSVLAAI-FCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN-SEQLTRAQCVT 89 (128)
T ss_dssp HHHHHHHHHHH-HCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC-CSSSCHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE-hhhCCHHHHHH
Confidence 46788888764 22 23343311111 12333333322 236889999999999999888765 57888777777
Q ss_pred HHHHHHHHHHhcccc--HHHHHHHHHHhcc
Q 043255 1757 WLMSMMLFVRNQNGA--LAEAIRIWKRNFD 1784 (1843)
Q Consensus 1757 Wll~~~~~i~~qnGs--i~d~l~~~k~nv~ 1784 (1843)
....+...+.-.-|. |.+.+..-+.++.
T Consensus 90 l~~~L~~~~~e~~G~~mif~lv~~lqe~l~ 119 (128)
T 2ebk_A 90 VKEKLLEQAESLLSEPMVHELVLWIQQNLR 119 (128)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHH
Confidence 777766655433343 3443333344443
No 116
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=82.07 E-value=20 Score=41.85 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHhccC-cCcc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHH---Hhchhhh-----hhhhh
Q 043255 21 ITKLKALSSLSALLKEKS-GKDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVI---TVGRDLA-----PHLKS 89 (1843)
Q Consensus 21 tTK~KALqeL~~lv~~~~-~~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~---~~gK~la-----p~Lk~ 89 (1843)
-.|..||+.|..++.+.+ ...+ .|.+ +.+..|+.-+++..||+.|-.+++.++. .+++.+. |.|-+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l---~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGM---HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHH---HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCH---HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 378999999999997543 1122 3444 4455567678999999999999999985 3333332 33333
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvss 169 (1843)
++- .|++..|.+.|.-++...--... ...-.|.....+..+...|+. ++ .++..-
T Consensus 132 LL~------~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~~~ggi~~L~~lL~~-~d----------------~~v~~~ 186 (296)
T 1xqr_A 132 LLD------RDACDTVRVKALFAISCLVREQE--AGLLQFLRLDGFSVLMRAMQQ-QV----------------QKLKVK 186 (296)
T ss_dssp HHH------HCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHS-SC----------------HHHHHH
T ss_pred HHc------cCCCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHcC-CC----------------HHHHHH
Confidence 332 26678888888888886643211 122234445677777776642 11 245566
Q ss_pred HHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCC
Q 043255 170 SLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIP 249 (1843)
Q Consensus 170 SL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p 249 (1843)
+..++.++.... .+ .+...+.. ..+ +.+=++++++++.||..+...|..++...+
T Consensus 187 A~~aLs~L~~~~---------~~-----------~~~~vv~~--g~i---~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 187 SAFLLQNLLVGH---------PE-----------HKGTLCSM--GMV---QQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHHHC---------GG-----------GHHHHHHT--THH---HHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCC---------hH-----------HHHHHHHc--CCH---HHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 666777766431 00 01111110 111 224456788999999999999999988744
No 117
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.77 E-value=22 Score=37.99 Aligned_cols=183 Identities=17% Similarity=0.079 Sum_probs=104.7
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 9 AQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 9 ~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
...++.|.-.|+..|..|++.|..+-. . ..++ .+.. +.-|.+..||..+-.+++.+.. .
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---~----~~~~---~L~~-~l~~~~~~vr~~a~~aL~~~~~---~------- 80 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---E----RAVE---PLIK-ALKDEDAWVRRAAADALGQIGD---E------- 80 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---G----GGHH---HHHH-HTTCSCHHHHHHHHHHHHHHCC---G-------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---c----cHHH---HHHH-HHcCCCHHHHHHHHHHHHhhCC---H-------
Confidence 355566667788899999999887522 1 1222 2222 3348899999999888776531 2
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVIS 168 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvs 168 (1843)
..++.......|+++.|...|..++...=. + +.+..+.+.++ |. ..+|..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~------------~~~~~L~~~l~-------d~----------~~~vr~ 130 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-E------------RAVEPLIKALK-------DE----------DWFVRI 130 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G------------GGHHHHHHHTT-------CS----------SHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H------------HHHHHHHHHHh-------CC----------CHHHHH
Confidence 223333344579999999999999976522 1 23333333331 11 124555
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcC
Q 043255 169 SSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNI 248 (1843)
Q Consensus 169 sSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~ 248 (1843)
.++.+|+.+- .. . ++ ..+.++++++++.||.+....|..+-
T Consensus 131 ~a~~aL~~~~------------~~------~--------~~----------~~L~~~l~d~~~~vr~~a~~aL~~~~--- 171 (211)
T 3ltm_A 131 AAAFALGEIG------------DE------R--------AV----------EPLIKALKDEDGWVRQSAADALGEIG--- 171 (211)
T ss_dssp HHHHHHHHHC------------CG------G--------GH----------HHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcC------------CH------H--------HH----------HHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 6666665531 00 0 00 11344566778889988888777651
Q ss_pred CcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 249 PHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 249 p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
. +...+.+...+.+.++.+....-+++-.+...
T Consensus 172 -----~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 172 -----G---ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -----S---HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -----c---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 1 22334445666677777766666666555443
No 118
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=79.76 E-value=2.1 Score=41.19 Aligned_cols=36 Identities=31% Similarity=0.737 Sum_probs=26.2
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHH
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKW 1827 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kW 1827 (1843)
....+-|.||--. . .+. + ..|..|+..||..||.+=
T Consensus 12 ~~~D~~C~VC~~~-t-~~~-l--~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-T-AES-L--FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-C-SSC-C--SSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-c-ccc-e--eccccccccccHhhcccc
Confidence 3345689999643 2 122 2 579999999999999985
No 119
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=78.40 E-value=42 Score=35.52 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=108.6
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHhccCcC--cc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh---chhhh
Q 043255 12 LKRLARKDPITKLKALSSLSALLKEKSGK--DI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV---GRDLA 84 (1843)
Q Consensus 12 lKkL~KKD~tTK~KALqeL~~lv~~~~~~--~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~---gK~la 84 (1843)
.+=|.-.|+..+..|+..|..+....+.. .+ .+.+|.-. ++.-+++..||+.+-.+++.+.... ++.+.
T Consensus 18 ~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV----QLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH----HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH----HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 33345678889999999999987533211 11 23443322 3344678999999999999887422 22221
Q ss_pred hhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHH
Q 043255 85 PHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQ 164 (1843)
Q Consensus 85 p~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~ 164 (1843)
. ...+++-+.-+-|++..+...|..++...-...+...+. +.....+..+.+.++. + + .
T Consensus 94 ~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~-~----------~------~ 152 (210)
T 4db6_A 94 D--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSS-P----------N------E 152 (210)
T ss_dssp H--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTHHHHHHHHTTC-S----------C------H
T ss_pred H--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH--HHHcCcHHHHHHHHcC-C----------C------H
Confidence 1 124444455557788999999999998876443333222 2344566666655531 1 1 2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHH
Q 043255 165 QVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSY 244 (1843)
Q Consensus 165 RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tl 244 (1843)
++...++.+|..+.... + ..+...+. ...+ ..+-+++.++++.||+.....|..+
T Consensus 153 ~v~~~a~~aL~~l~~~~----------~----------~~~~~~~~--~g~i---~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 153 QILQEALWALSNIASGG----------N----------EQKQAVKE--AGAL---EKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHHHHHTSC----------H----------HHHHHHHH--TTHH---HHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------c----------HHHHHHHH--CCCH---HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45666777777666211 0 00111111 0111 2356677889999999999999877
Q ss_pred Hh
Q 043255 245 IK 246 (1843)
Q Consensus 245 l~ 246 (1843)
.+
T Consensus 208 ~~ 209 (210)
T 4db6_A 208 QS 209 (210)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 120
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=77.92 E-value=71 Score=42.65 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhc
Q 043255 19 DPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLL-DYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFS 97 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsi-D~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~ 97 (1843)
|-..|.-||-.|..+.+.- .+.....|+.-..+.+.+.. |+..+||..+-.+.+.+..-.++.- .|++.+++.-+.+
T Consensus 477 ~w~~~eaal~~l~~iae~~-~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHF-GGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRG 554 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 4445555555555543322 11223345554446677764 6799999999999999998877554 7889999888888
Q ss_pred ccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 043255 98 QFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLK 143 (1843)
Q Consensus 98 ~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk 143 (1843)
+ | +.|..+|..+|...-. .-...+.-+..+|++.+.+.+.
T Consensus 555 l-~--~~v~~~A~~al~~l~~---~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCR---DCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHc
Confidence 8 5 6788888888875531 1122344445566666655553
No 121
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=77.53 E-value=69 Score=34.47 Aligned_cols=186 Identities=16% Similarity=0.117 Sum_probs=106.7
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCc--Ccc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---hchhhhhhh
Q 043255 15 LARKDPITKLKALSSLSALLKEKSG--KDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT---VGRDLAPHL 87 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~--~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~---~gK~lap~L 87 (1843)
|...|+..+..|+.-|..+....+. +.+ .+.++. .-++.-+++..||+.+-.+++.+... .++.+..
T Consensus 53 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~----l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-- 126 (252)
T 4hxt_A 53 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV----LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-- 126 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH----HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--
T ss_pred HhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH----HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence 3344555666666666665543110 001 233333 33344488999999999999999842 2222221
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHH
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVI 167 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVv 167 (1843)
...++.-+....|++..+...|..++...-...+.+.. .+....++..+.+.++. + + ..+.
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~-~----------~------~~v~ 187 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--AIVDAGGVEVLVKLLTS-T----------D------SEVQ 187 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHHHHHHTTC-S----------C------HHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCcCHHHHHHHHCC-C----------C------HHHH
Confidence 12444444455688899999999999987654332222 33446677777666631 1 1 2455
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 168 SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
..++.+|..+.... + ..+...+. ...+ +.+-++++++++.+|+.....|..+...
T Consensus 188 ~~a~~~L~~l~~~~----------~----------~~~~~l~~--~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 188 KEAARALANIASGP----------T----------SAIKAIVD--AGGV---EVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHTTSB----------H----------HHHHHHHH--TTHH---HHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC----------H----------HHHHHHHH--CCCH---HHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 56666666554210 0 00111110 0111 2366678889999999999999999988
Q ss_pred CCc
Q 043255 248 IPH 250 (1843)
Q Consensus 248 ~p~ 250 (1843)
.+.
T Consensus 243 ~~~ 245 (252)
T 4hxt_A 243 GWL 245 (252)
T ss_dssp CBC
T ss_pred CCc
Confidence 754
No 122
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.49 E-value=47 Score=38.43 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=123.7
Q ss_pred HhhhcCChhhHHHHHHHHHHHHhccCcCcccch---hhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchh---hhhh
Q 043255 13 KRLARKDPITKLKALSSLSALLKEKSGKDIAPI---IPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRD---LAPH 86 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~i---Lp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~---lap~ 86 (1843)
.+|--||..-+.+|++.|.+.+.+. .+++.+. +--|..+ |+. |++..|=..+-.++..++...+.. +.+|
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~l--r~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTL--RFF-ETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHH--HTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHH--HHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3455679989999999999988764 3443222 3346643 333 899999999999999999887654 6666
Q ss_pred -hhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHH
Q 043255 87 -LKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQ 165 (1843)
Q Consensus 87 -Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~R 165 (1843)
...++|+-+.=+=|+...|-..+++.+...- . .+.-.-+++|+.+.++ .|..|
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~-------~--v~~~~~v~~~l~~g~k-----------------sKN~R 182 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS-------D--VVGPLKMTPMLLDALK-----------------SKNAR 182 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH-------H--HHCHHHHHHHHHHGGG-----------------CSCHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-------H--HCCHHHHHHHHHHHHc-----------------cCCHH
Confidence 4678888888888998888888887775321 1 1344457888876552 13469
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHH
Q 043255 166 VISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYI 245 (1843)
Q Consensus 166 VvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll 245 (1843)
+...+|..+..+++.- |.. ..+ ++. .+ +..=+++...++.||.|+-.++..++
T Consensus 183 ~R~e~l~~l~~li~~~--------G~~----~~~--------~l~-~~------~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 183 QRSECLLVIEYYITNA--------GIS----PLK--------SLS-VE------KTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHHHHHHHHH--------CSG----GGG--------GGC-HH------HHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------CCC----ccc--------ccc-ch------HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999875 111 011 110 00 11223455679999999999999999
Q ss_pred hcCCc
Q 043255 246 KNIPH 250 (1843)
Q Consensus 246 ~~~p~ 250 (1843)
.+..+
T Consensus 236 ~~~Gd 240 (266)
T 2of3_A 236 KFEGD 240 (266)
T ss_dssp HHHTT
T ss_pred HHhhH
Confidence 88643
No 123
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=76.02 E-value=2.2e+02 Score=38.06 Aligned_cols=340 Identities=10% Similarity=0.042 Sum_probs=172.2
Q ss_pred ccchhhhHHHHHHhhhc--------C-CC------HHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcc-----cCC
Q 043255 42 IAPIIPQWAFEYKRLLL--------D-YS------REVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQ-----FDS 101 (1843)
Q Consensus 42 l~~iLp~W~~lY~rLsi--------D-~~------RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~-----~D~ 101 (1843)
+...++.|..++.++.- | .+ -+||..+-.++..++.+..+.+.||++.+++.-|..+ -+.
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 44567888888776432 2 11 2688888888888999999999999999998865433 245
Q ss_pred cHHHHHHHHHHHHhhCCChhhHHHHHH--HHHHHHH-HHHHHHhccCccccCCCCCChhh-----H--HHHH-HHHHHHH
Q 043255 102 NSEVSQAAKRSLQAAFPAQEKRLDALL--ICATEVF-IYLEENLKLTPQNLSDKAIALDE-----L--EEMH-QQVISSS 170 (1843)
Q Consensus 102 ~~~VA~aA~~sf~~~Fp~~eKr~~a~~--~cq~eIl-~~~~d~Lk~Tp~TLSDks~~~EE-----~--EaKY-~RVvssS 170 (1843)
+..++..|.+-+..+-.. ++....++ -+-.+|+ ..+..++..|++....=...++| . ++-| -|..+..
T Consensus 305 ~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp SHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHH
Confidence 667888888877665432 22222222 2334455 34444454455433210111211 0 1111 1211111
Q ss_pred -HHHHHH------------HHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhcc----------------c--
Q 043255 171 -LLALAT------------LLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSD----------------H-- 219 (1843)
Q Consensus 171 -L~aL~~------------LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~----------------~-- 219 (1843)
|..++. ++..... +..+.+.. . =+.|.+++-....+... -
T Consensus 384 ~L~~l~~~~~~~v~~~~l~~i~~~l~-~~~~~~~~------~--w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 384 FLKELKEKNEVLVTNIFLAHMKGFVD-QYMSDPSK------N--WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHH-HHHC----------C--HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHH-HhccCcch------h--HHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 111111 1110000 00000000 0 12333333322121100 0
Q ss_pred ---hhHHhhhccC---ChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCC--
Q 043255 220 ---KYFLDFLKSQ---SVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFP-- 291 (1843)
Q Consensus 220 ---k~fW~~~k~~---~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~P-- 291 (1843)
...-..++.. .|.||++++.++..+....+ +++...+-+.++..+.++++.++.....|+-.|.....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 0111223444 89999999999998877542 34566677888888888888899999999988876321
Q ss_pred --Ccee----e-cCcchhhhHHHHHHHHccC---CC--CCccchhhHHHHhhhCCcCcCCChHHHHHHHHHHHhhhcCCC
Q 043255 292 --DCWT----V-LNAQKTILNRFWHFLKNGC---FG--SQQVSYPALVLFLDVVPPKAVAADKFFQDFFNSLWAGRNEPH 359 (1843)
Q Consensus 292 --d~W~----~-~n~kK~~lprL~~~Lr~G~---~G--sa~~~yp~LlplLs~iP~~vl~~~~f~~~ff~al~~Gl~~r~ 359 (1843)
.-+. . ..--...+++|.+.+.+++ .+ .....+..|--++..++.++.+ ++..++..+..=+....
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p---~~~~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP---LFPQLLAQFIEIVTIMA 607 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Confidence 0111 1 1223557777888888763 11 2234566777777777766543 22233322222111100
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHH
Q 043255 360 SSNSDHKAFFRAFKECFLWGLLNASRYFDGVDSIFHFRVALVDDILLKLL 409 (1843)
Q Consensus 360 ~s~s~~~a~~say~Ec~~~~l~~~~~~~~~~~s~~~~~~~ll~~~l~pli 409 (1843)
....+. .+....+||+--+.+..+ . +.... +.+.++|++
T Consensus 608 ~~~~~~-~~~~~~~e~l~~l~~~~~-----~----~~~~~-~~~~~~p~~ 646 (960)
T 1wa5_C 608 KNPSNP-RFTHYTFESIGAILNYTQ-----R----QNLPL-LVDSMMPTF 646 (960)
T ss_dssp TSCCCH-HHHHHHHHHHHHHHHTSC-----G----GGHHH-HHHHHHHHH
T ss_pred hCCCCc-HHHHHHHHHHHHHHhcCC-----c----chHHH-HHHHHHHHH
Confidence 011222 223457888887766522 1 21223 366777877
No 124
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.54 E-value=35 Score=36.11 Aligned_cols=89 Identities=20% Similarity=0.113 Sum_probs=61.8
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL 87 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L 87 (1843)
....++.|.-.|+..|..|++.|..+-. . ..++. +...+ -|.+..||..+..+++.+.. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~----~~~~~---L~~~l-~~~~~~vr~~a~~~L~~~~~---~------ 75 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD---E----RAVEP---LIKAL-KDEDAWVRRAAADALGQIGD---E------ 75 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC---G----GGHHH---HHHHT-TCSSHHHHHHHHHHHHHHCC---G------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC---h----hHHHH---HHHHH-cCCCHHHHHHHHHHHHhhCC---H------
Confidence 4467778888999999999999987532 1 12232 22333 48999999999888776531 2
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhC
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAF 117 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~F 117 (1843)
..++.......|+++.|...|..++...=
T Consensus 76 -~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 76 -RAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 23333344567999999999999998653
No 125
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=73.67 E-value=95 Score=39.45 Aligned_cols=269 Identities=11% Similarity=-0.005 Sum_probs=140.6
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHhccCcCc-c---cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH--hchhhhh
Q 043255 12 LKRLARKDPITKLKALSSLSALLKEKSGKD-I---APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT--VGRDLAP 85 (1843)
Q Consensus 12 lKkL~KKD~tTK~KALqeL~~lv~~~~~~~-l---~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~--~gK~lap 85 (1843)
.+-|...|+.+|.+|+..|..+....+... + .++++ .+-..|.-+.+..||..+..++..+... .++.+..
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~---~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 96 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 96 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHH---HHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHH---HHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 333445899999999999999887543111 1 23443 3444455566899999988888866532 1122221
Q ss_pred hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHHHhccC-cc-------ccCCCC-CC
Q 043255 86 HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQ-EKRLDALLICATEVFIYLEENLKLT-PQ-------NLSDKA-IA 155 (1843)
Q Consensus 86 ~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~-eKr~~a~~~cq~eIl~~~~d~Lk~T-p~-------TLSDks-~~ 155 (1843)
...+++-+.-..+++..+...|..++...-... +.+. .+....++..+.+.|+.. ++ .|..-+ ..
T Consensus 97 --~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~---~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 97 --SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM---AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp --TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH---HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred --cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH---HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 134455445556778899999998888654321 1221 233456666666666421 00 000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhh----------Hhhhcc--chhHH
Q 043255 156 LDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFS----------EKLFSD--HKYFL 223 (1843)
Q Consensus 156 ~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~----------e~lf~~--~k~fW 223 (1843)
++. |.......++..|+..+.. ... .+.++.+...+ ..+... -..+-
T Consensus 172 ~~~------~~~i~~~g~v~~Lv~lL~~-----~~~----------~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 172 QES------KLIILASGGPQALVNIMRT-----YTY----------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230 (644)
T ss_dssp HHH------HHHHHHTTHHHHHHHHHTT-----CCC----------HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHH
T ss_pred cHH------HHHHHHcCChHHHHHHHHc-----CCh----------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 100 0000111233334443311 000 11111111100 011110 12345
Q ss_pred hhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhh
Q 043255 224 DFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTI 303 (1843)
Q Consensus 224 ~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~ 303 (1843)
+++++.++.+|+....+|..++...+... ..+.+.+.++..+.+.++.+....-.++-.+....|+.-..+ .+...
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v-~~~g~ 306 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV-CQVGG 306 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTCC---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCC
Confidence 56777889999999999999988765432 235577777788888887776666666666766433221111 01235
Q ss_pred hHHHHHHHHc
Q 043255 304 LNRFWHFLKN 313 (1843)
Q Consensus 304 lprL~~~Lr~ 313 (1843)
+++|.++|++
T Consensus 307 v~~Lv~lL~~ 316 (644)
T 2z6h_A 307 IEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666664
No 126
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=73.22 E-value=1.1e+02 Score=34.02 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=43.5
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
..++-|.-.|+..|..|+..|..+-. .+ .++. + -++.-|.+..||..+..+++.+... .. .++.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~---~~----~~~~---L-~~~l~d~~~~vR~~A~~aL~~l~~~-~~----~~~~ 90 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGG---QD----AVRL---A-IEFCSDKNYIRRDIGAFILGQIKIC-KK----CEDN 90 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC---HH----HHHH---H-HHHHTCSSHHHHHHHHHHHHHSCCC-TT----THHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC---ch----HHHH---H-HHHHcCCCHHHHHHHHHHHHHhccc-cc----cchH
Confidence 34455666777788887777766421 11 1111 1 1233356666666666666555321 01 1112
Q ss_pred hhhhHh-hcccCCcHHHHHHHHHHHHhh
Q 043255 90 LMGPWW-FSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 90 l~g~Wl-~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
+++.-. ....|++..|...|..++...
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQR 118 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 222211 123456666666666666544
No 127
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=73.05 E-value=43 Score=41.52 Aligned_cols=236 Identities=12% Similarity=0.069 Sum_probs=128.9
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccC---cCcc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---h
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKS---GKDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT---V 79 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~---~~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~---~ 79 (1843)
+.-..+.+.-.|+.++++|.+.++.++.... .+.+ .|++|.-+++ |.-++++.|+..|..+++.|++. .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~l---L~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF---LGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH---HCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 5566788999999999999999999875321 2333 4566555543 34466789999999999998742 1
Q ss_pred chhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhh
Q 043255 80 GRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA-QEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDE 158 (1843)
Q Consensus 80 gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~-~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE 158 (1843)
.+.+... ..+|+-+.-+.+++..|...|..++...-.. ++-|..+ .....+..+...++. ++ .+.
T Consensus 136 ~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v---~~~G~i~~Ll~lL~~-~~--------~~~ 201 (510)
T 3ul1_B 136 TKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV---IKHGAIDPLLALLAV-PD--------LST 201 (510)
T ss_dssp HHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH---HHTTCHHHHHHHTCS-SC--------GGG
T ss_pred HHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH---HHcCChHHHHHHHHh-cc--------chh
Confidence 2222210 1233333344678899999999998866432 2222222 223344444444421 10 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHH
Q 043255 159 LEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATY 238 (1843)
Q Consensus 159 ~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y 238 (1843)
......|..+.+|.-+.. . .+... .. . ....++. .+.++++++++.||....
T Consensus 202 ~~~~~~~~a~~~L~nl~~---~----------~~~~~--~~---~-------~~~~~lp---~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCR---N----------KNPAP--PL---D-------AVEQILP---TLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp SCHHHHHHHHHHHHHHHC---C----------CSSCC--CH---H-------HHHHHHH---HHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh---c----------ccchh--HH---H-------HHHhHHH---HHHHHHhcCCHHHHHHHH
Confidence 112233444433332221 0 00000 00 0 0112222 366778899999999999
Q ss_pred HHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHh
Q 043255 239 SVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSK 288 (1843)
Q Consensus 239 ~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k 288 (1843)
..|..+....++....-.-.-+.+.++..+...++.+......++-.+..
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence 99988876543211000001134555566776776666666666655543
No 128
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=72.97 E-value=1.1e+02 Score=41.14 Aligned_cols=123 Identities=11% Similarity=-0.023 Sum_probs=79.4
Q ss_pred CChhhHHHHHHHHHHHHhccC-----cC---cccchhhhHH-HHHHhhhcCC---CHHHHHHHHHHHHHHHHHhchhhhh
Q 043255 18 KDPITKLKALSSLSALLKEKS-----GK---DIAPIIPQWA-FEYKRLLLDY---SREVRRATHEMMTSLVITVGRDLAP 85 (1843)
Q Consensus 18 KD~tTK~KALqeL~~lv~~~~-----~~---~l~~iLp~W~-~lY~rLsiD~---~RrVRe~ah~~~~~l~~~~gK~lap 85 (1843)
.|-.-|.=||-.|..+..... .. ....+.+... .+.|-+. |+ .+.||..+-.+.+.+..-..+ .
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~-~~~~~~p~vr~~a~~~lg~~~~~~~~---~ 492 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-SNNIPHIILRVDAIKYIYTFRNQLTK---A 492 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-CSSCSCHHHHHHHHHHHHHTGGGSCH---H
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc-CCCCCCceehHHHHHHHHHHHhhCCH---H
Confidence 344556667777777643210 11 0112333333 3556553 44 899999999999988875432 3
Q ss_pred hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChh-------h-HHHHHHHHHHHHHHHHHHHhcc
Q 043255 86 HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQE-------K-RLDALLICATEVFIYLEENLKL 144 (1843)
Q Consensus 86 ~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e-------K-r~~a~~~cq~eIl~~~~d~Lk~ 144 (1843)
|++.+++.=+.++.|++.+|..+|..||..+....+ . ..+.+.-+...|+..+...+.+
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 788888888888899999999999999998654210 0 1133456667788877777654
No 129
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=72.32 E-value=56 Score=34.59 Aligned_cols=190 Identities=9% Similarity=0.050 Sum_probs=105.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh-hhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHH
Q 043255 53 YKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK-SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICA 131 (1843)
Q Consensus 53 Y~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk-~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq 131 (1843)
..++.-+.+..||+.+-.+++.+...........++ ..+++-+.-+.+++..+...|..++...-..++...+. +..
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~ 94 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA--VID 94 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH--HHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH--HHH
Confidence 344556889999999999999988432221111111 34445455556789999999999999876432222222 224
Q ss_pred HHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhh
Q 043255 132 TEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSF 211 (1843)
Q Consensus 132 ~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~ 211 (1843)
...+..+.+.|+.. + .++...++.+|..+.... + ..+...+.
T Consensus 95 ~g~i~~L~~lL~~~-----------~------~~v~~~a~~~L~~l~~~~----------~----------~~~~~~~~- 136 (210)
T 4db6_A 95 AGALPALVQLLSSP-----------N------EQILQEALWALSNIASGG----------N----------EQIQAVID- 136 (210)
T ss_dssp TTCHHHHHHHTTCS-----------C------HHHHHHHHHHHHHHTTSC----------H----------HHHHHHHH-
T ss_pred CCCHHHHHHHHcCC-----------c------HHHHHHHHHHHHHHHcCC----------H----------HHHHHHHH-
Confidence 45566666555211 1 245556666666654210 0 00001110
Q ss_pred hHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHH
Q 043255 212 SEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLL 286 (1843)
Q Consensus 212 ~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l 286 (1843)
...+ +.+-++++++++.+|+.....|..++...++....-.-....+.++..+.+.++.+....-.++-.+
T Consensus 137 -~~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 137 -AGAL---PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp -TTHH---HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -cCcH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0111 2355667788999999999999999986543210000011334555667766666665555554443
No 130
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=70.16 E-value=2.2 Score=39.33 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=33.8
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcC--CCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--HKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--~~stCPlCR~ 1841 (1843)
...|.||... + .+ +.|..|...||..|+...+..- +.=.||.|+.
T Consensus 12 ~~~C~vC~~~---~--~l--l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDG---T--DV--LRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCC---T--TC--EECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCCC---C--eE--EECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 4579999642 2 23 7899999999999998777643 2348999975
No 131
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=69.29 E-value=51 Score=35.93 Aligned_cols=187 Identities=12% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHhccCc--Ccc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 11 HLKRLARKDPITKLKALSSLSALLKEKSG--KDI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 11 ~lKkL~KKD~tTK~KALqeL~~lv~~~~~--~~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
.++-|...|+..+..|+.-|..+....+. ..+ .+.+|.- -++.-+++..||+.+-.+++.|......+....
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L----~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL----VQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH----HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH----HHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 34445556777888888888887653211 111 2333322 234456889999999999998875332221111
Q ss_pred h-hhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHH
Q 043255 87 L-KSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQ 165 (1843)
Q Consensus 87 L-k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~R 165 (1843)
+ ...+++-+.-+.|++..|...|..++...-..+..+... +....++..+.+.++. + . ..
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~-~--------~--------~~ 195 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSS-P--------N--------EQ 195 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTCHHHHHHGGGC-S--------S--------HH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH--HHHCCCHHHHHHHHCC-C--------C--------HH
Confidence 1 124444455557789999999999999877643333222 2334556666655531 1 0 24
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHH
Q 043255 166 VISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYI 245 (1843)
Q Consensus 166 VvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll 245 (1843)
+...++.+|..+...- + ..+...+. ...+ +.+-++++++++.||+.....|..+.
T Consensus 196 v~~~a~~~L~~l~~~~----------~----------~~~~~~~~--~g~i---~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 196 ILQEALWALSNIASGG----------N----------EQKQAVKE--AGAL---EKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHHHHHTTSC----------H----------HHHHHHHH--TTHH---HHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC----------H----------HHHHHHHH--CCcH---HHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 5566777777665210 0 00111111 0111 23556678889999999888887654
No 132
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=68.45 E-value=3e+02 Score=36.41 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=55.1
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHhc-hhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLL--DYSREVRRATHEMMTSLVITVG-RDLAPH 86 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsi--D~~RrVRe~ah~~~~~l~~~~g-K~lap~ 86 (1843)
..++.| +|+..+..|...|..++++. .+.+.++++.-...+-.+.- +.++++|+..-.+.+.++..++ ....||
T Consensus 533 ~l~~~l--~~~~V~~~A~~al~~l~~~~-~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 533 LVLHAL--GNPELSVSSVSTLKKICREC-KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHHT--TCGGGHHHHHHHHHHHHHHT-GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHh--CCchHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 455555 34677888888888888653 33333333333332323222 4689999999999999998886 788899
Q ss_pred hhhhhhh
Q 043255 87 LKSLMGP 93 (1843)
Q Consensus 87 Lk~l~g~ 93 (1843)
+..+|++
T Consensus 610 ~~~l~~~ 616 (963)
T 2x19_B 610 LHSLISP 616 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 133
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=65.70 E-value=2.4e+02 Score=34.14 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=140.0
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHhccCcC-cc---cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH--hchhhhh
Q 043255 12 LKRLARKDPITKLKALSSLSALLKEKSGK-DI---APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT--VGRDLAP 85 (1843)
Q Consensus 12 lKkL~KKD~tTK~KALqeL~~lv~~~~~~-~l---~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~--~gK~lap 85 (1843)
.+-|...|+..|.+|+.-|..+....+.. .+ .+.+ +.+-..|.-+++..+|+.+..++..+... .++.+..
T Consensus 23 v~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i---~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 99 (529)
T 1jdh_A 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV---SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchH---HHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 34444688999999999999987643211 11 1333 34444555567899999998888887532 1222222
Q ss_pred hhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHHHHHHHHhccCc-c-------ccCCCCCCh
Q 043255 86 HLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA-QEKRLDALLICATEVFIYLEENLKLTP-Q-------NLSDKAIAL 156 (1843)
Q Consensus 86 ~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~-~eKr~~a~~~cq~eIl~~~~d~Lk~Tp-~-------TLSDks~~~ 156 (1843)
. ..+++-+.-..+++..+...|..++...-.. ++.+. .+....++..+.+.++... + .|..-....
T Consensus 100 ~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 100 S--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM---AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp T--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH---HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred c--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH---HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 1 3444445556678889999998888865432 11221 2334556666666654210 0 000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhh----------hHhhhc--cchhHHh
Q 043255 157 DELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSF----------SEKLFS--DHKYFLD 224 (1843)
Q Consensus 157 EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~----------~e~lf~--~~k~fW~ 224 (1843)
++ +.+.+. .-.++..+++.+... .. ...++.+... -..+.. .-+.+-+
T Consensus 175 ~~----~~~~i~-~~~~i~~L~~ll~~~-----~~----------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ 234 (529)
T 1jdh_A 175 QE----SKLIIL-ASGGPQALVNIMRTY-----TY----------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234 (529)
T ss_dssp HH----HHHHHH-HTTHHHHHHHHHHHC-----CC----------HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred HH----HHHHHH-HCCCHHHHHHHHHhC-----Ch----------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 00 001111 112233333333110 00 0011111000 000110 0112455
Q ss_pred hhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcchhhh
Q 043255 225 FLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQKTIL 304 (1843)
Q Consensus 225 ~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~kK~~l 304 (1843)
++++.++.+|+.....+..++...+... ....+.+.++..+.+.++.+....-.++-.+....|+.-..+ .+...+
T Consensus 235 ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~v 310 (529)
T 1jdh_A 235 HLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV-CQVGGI 310 (529)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH-HHTTHH
T ss_pred HHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHcCCh
Confidence 6677889999999999999887765432 234567777788888887777666666666665433222111 023366
Q ss_pred HHHHHHHHcc
Q 043255 305 NRFWHFLKNG 314 (1843)
Q Consensus 305 prL~~~Lr~G 314 (1843)
|+|.++|++.
T Consensus 311 ~~L~~ll~~~ 320 (529)
T 1jdh_A 311 EALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 7777777654
No 134
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=65.13 E-value=16 Score=38.51 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+.... +-.+..+++. -+ .....+.|.+|++||..++.|.+...
T Consensus 8 RL~kEl~~l~~~--~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 8 RIQKELQDLGRD--PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp HHHHHHHHHHHS--CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence 467788888753 34566666532 2344555554 22 23578999999999999999988643
No 135
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=64.69 E-value=8.5 Score=40.21 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccCCCCceEEE---EeccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1683 PLIANELSQIKKANIADENFSLT---VSKSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vk---v~~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
.-+.+|++++++. ....+.|. ...+-.+..++..-. .....+.|.+|++||..+++|.+..++
T Consensus 25 ~RL~kEl~~l~~~--~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 96 (136)
T 2a7l_A 25 KRLQKELLALQND--PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGEN 96 (136)
T ss_dssp HHHHHHHHHHHHS--CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSC
T ss_pred HHHHHHHHHHHhC--CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 3456788887653 12233322 112234555555422 235789999999999999999987654
No 136
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=63.75 E-value=15 Score=38.60 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec--cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK--SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~--~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.+.... +-.+..++..- + +....+.|.+|++||..++.|.+...
T Consensus 5 RL~~El~~l~~~--~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (149)
T 1fxt_A 5 RIMKEIQAVKDD--PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 73 (149)
T ss_dssp HHHHHHHHHHHC--GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 466788888753 23456666532 34566666552 1 24578999999999999999988653
No 137
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=63.09 E-value=43 Score=35.12 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=39.9
Q ss_pred ceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhcc-cc--HHHHHHHHHHhcccccCCC
Q 043255 1723 KMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQN-GA--LAEAIRIWKRNFDKEFEGV 1790 (1843)
Q Consensus 1723 ~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qn-Gs--i~d~l~~~k~nv~~~~~g~ 1790 (1843)
.+.|.|++|++||-.++.+..... ..+..+...+...+..++.-+| |. |...+..-+.++...+...
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~ 143 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRD 143 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999888765432 3455444444444555553222 22 4555555566665554433
No 138
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=62.56 E-value=24 Score=38.14 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhccCCCCceEEEEe--ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1682 PPLIANELSQIKKANIADENFSLTVS--KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1682 p~li~~el~~v~~~~~~~~~~~Vkv~--~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-..+++|++++++. ....+.+... .+-.+..+++.-- .....+.|+||++||..+++|.+...
T Consensus 19 ~~rL~kEl~~l~~~--~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 19 SLLLRRQLAELNKN--PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp HHHHHHHHHHHHHS--CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC
Confidence 34677899888763 3456676642 2445666666522 23578999999999999999988654
No 139
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=62.39 E-value=26 Score=35.84 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
-+.+|++++++. ....+.|.... +-.+..+++.- + +....+.|.+|++||..+++|.+..++
T Consensus 10 RL~kEl~~l~~~--~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i 78 (125)
T 2fo3_A 10 RIQKELHNFLNN--PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP 78 (125)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCC
Confidence 466788888753 24467776642 34666666652 2 235789999999999999999987653
No 140
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=61.22 E-value=23 Score=37.63 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
.-+.+|++.+++. ....+.+.... +-.+..++..- + +....+.|.||++||..++.|.+...+
T Consensus 12 ~RL~kEl~~l~~~--~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 81 (156)
T 2e2c_A 12 KRLQQELRTLLMS--GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC 81 (156)
T ss_dssp HHHHHHHHHHHHH--CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred HHHHHHHHHHHhC--CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCc
Confidence 3467788888753 23456655432 34556666552 2 345789999999999999999886543
No 141
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=60.96 E-value=24 Score=38.01 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVS-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
.-|.+|++.+++. ....+.|... .+-.+..+++. -+ .....+.|.||++||..++.|.+..++
T Consensus 24 ~RL~kEl~~l~~~--~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 93 (166)
T 2ayv_A 24 KRINKELNDLSKD--PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKI 93 (166)
T ss_dssp HHHHHHHHHHHHS--CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred HHHHHHHHHHHhC--CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCC
Confidence 3567788888753 3456666653 23466666665 22 235789999999999999999886543
No 142
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=60.83 E-value=1.3e+02 Score=40.94 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=133.8
Q ss_pred cCChhhHHHHHHHHHHHHhccCcCc---------ccchhhhHHHHHHhhhcCCC-----HHHHHHHHH--HHHHHHHHhc
Q 043255 17 RKDPITKLKALSSLSALLKEKSGKD---------IAPIIPQWAFEYKRLLLDYS-----REVRRATHE--MMTSLVITVG 80 (1843)
Q Consensus 17 KKD~tTK~KALqeL~~lv~~~~~~~---------l~~iLp~W~~lY~rLsiD~~-----RrVRe~ah~--~~~~l~~~~g 80 (1843)
|=++-.+..+.+.+..+++..+.+. +......|-++-.+.+.|++ -.++++++- +...+.+.+|
T Consensus 600 ~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg 679 (1023)
T 4hat_C 600 DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1023)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888899999998765332 23345667777765555544 457777764 4456777888
Q ss_pred hhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHH--HHHHHHHHHHHHHHHHHhccCcc--ccCCCCCCh
Q 043255 81 RDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRL--DALLICATEVFIYLEENLKLTPQ--NLSDKAIAL 156 (1843)
Q Consensus 81 K~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~--~a~~~cq~eIl~~~~d~Lk~Tp~--TLSDks~~~ 156 (1843)
..+.||+..+++-= ...|. ..++.-.++...-=+...|.. ..+.-.+.+|+..+...+..+++ ..+..-++|
T Consensus 680 ~~f~~~~~~i~~~~-l~~y~---~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~ 755 (1023)
T 4hat_C 680 ADFYPQLGHIYYNM-LQLYR---AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP 755 (1023)
T ss_dssp GGGHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence 88888888776653 34444 444444443331100011222 23556678888888877743321 111110111
Q ss_pred --hhHHHHHHHHH-----HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccC
Q 043255 157 --DELEEMHQQVI-----SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQ 229 (1843)
Q Consensus 157 --EE~EaKY~RVv-----ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~ 229 (1843)
+-.-.-|.|-+ +..|.+++.+++++.. .. .......++.+|...-..-+---.+
T Consensus 756 l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~---------~~----------~~~~~~il~~vf~~Tl~mi~~~~~~ 816 (1023)
T 4hat_C 756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH---------MI----------PQGVILILQSVFECTLDMINKDFTE 816 (1023)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG---------GC----------HHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH---------hh----------hhhhHHHHHHHHHHHHHHHhccccc
Confidence 22222344432 4567777777777621 00 0111113344443111111111246
Q ss_pred ChhHHHHHHHHHHHHHhcCCccc-c--cchhhHHHHHHHcccCCCCCcchHHHHHHHHHHH
Q 043255 230 SVSIRSATYSVLKSYIKNIPHVF-N--EGNLKIIATAILGAFQEKDPVCHSSMWDAILLLS 287 (1843)
Q Consensus 230 ~p~VR~A~y~LL~tll~~~p~~l-~--~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~ 287 (1843)
-|-.|-.+|.|+++++++.|..+ . +...+.+-.+++-+++-+.+.+...-++.++.+.
T Consensus 817 ~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll 877 (1023)
T 4hat_C 817 YPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLV 877 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 89999999999999999987643 2 2234444455555555555554444444444443
No 143
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=60.71 E-value=25 Score=37.07 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+.... +-.+..+++.-- +....+.|.||++||..++.|.+...
T Consensus 8 RL~~E~~~l~~~--~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 8 RLMRDFKRLQQD--PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 456788888753 23456665432 234445555432 24579999999999999999988643
No 144
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=59.99 E-value=27 Score=37.08 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.|... .+-.+..++..-- +....+.|.||++||..+++|.+...
T Consensus 17 RL~kEl~~l~~~--~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 17 LVYKEVTTLTAD--PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence 456788887753 2456666653 2345666666522 23478999999999999999988654
No 145
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=59.88 E-value=22 Score=37.99 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec------cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK------SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~------~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
.-+.+|++.+++. ....+.+.... +-.+..+++.-- .....+.|.||++||..++.|.+..+
T Consensus 10 ~RL~kE~~~l~~~--~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 10 SRLAQERKAWRKD--HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp HHHHHHHHHHHHS--CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhC--CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 3567788888753 23455555432 233445554421 23578999999999999999988643
No 146
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=59.49 E-value=28 Score=36.13 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK-SANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
.-+.+|+.++++. ....+.|.... +-.+..+++. -+ +....+.|.||++||..++.|.+..++
T Consensus 23 ~RL~kEl~~l~~~--~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i 92 (136)
T 2h2y_A 23 YRIQKELNNFLKN--PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKP 92 (136)
T ss_dssp HHHHHHHHHHHHS--CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC
T ss_pred HHHHHHHHHHHhC--CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCC
Confidence 3466788888753 23456666542 3466666665 22 245789999999999999999987653
No 147
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=58.37 E-value=26 Score=37.63 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec------cccEEEEEEEecC------CceEEEEecCCCCCCCcceEeecc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK------SANEVVATYTKDE------TKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~------~~~EV~a~Y~ide------~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
-+.+|+.++++. ....+.+.... +-.+..++..--+ ....+.|.||++||..+++|.+..
T Consensus 14 RL~kEl~~l~~~--~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 14 RLQEERKQWRRD--HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp HHHHHHHHHHHS--CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHHhC--CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 356788888753 23456665432 3345555555322 347899999999999999998764
No 148
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=58.16 E-value=27 Score=36.79 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1685 IANELSQIKKANIADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
+.+|+.++++. ....+.+.... +-.+..+++.- + .....+.|.||++||..+++|.+...
T Consensus 6 L~kEl~~l~~~--~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 6 ITKETQNLANE--PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp HHHHHHHHHHS--CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHhC--CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence 56788888753 34566666532 23455555542 2 23578999999999999999988654
No 149
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=57.81 E-value=31 Score=36.46 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.+... .+-.+..++..- + .....+.|.||++||..+++|.+..+
T Consensus 9 RL~kEl~~l~~~--~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 9 RIIKETQRLLAE--PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 457788888763 3456666653 234566666652 2 23479999999999999999988654
No 150
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=57.79 E-value=20 Score=38.07 Aligned_cols=63 Identities=17% Similarity=0.392 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcc-CCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKAN-IADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~-~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++++++.. .....+.+.... +-.+..++..- + .....+.|.+|++||..++.|.+...
T Consensus 12 RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 82 (159)
T 2bep_A 12 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 82 (159)
T ss_dssp HHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence 4567888886521 124456666532 34566666552 2 24578999999999999999988653
No 151
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=57.52 E-value=2.3e+02 Score=37.10 Aligned_cols=244 Identities=11% Similarity=0.005 Sum_probs=124.1
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcCc-c---cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH--hchhhhhhhh
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGKD-I---APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVIT--VGRDLAPHLK 88 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~~-l---~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~--~gK~lap~Lk 88 (1843)
|...|+..|.+|+.-|..+....+... + .+++ ..+...|.-+.+..||+.+..++..|... .++.+.. .
T Consensus 159 L~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i---~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~ 233 (780)
T 2z6g_A 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV---SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--S 233 (780)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--T
T ss_pred HCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH---HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--c
Confidence 345788899999999988775321111 1 1333 34445555567999999999999886531 1222222 1
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHHHHHHHHhccCcc--------ccCCCCCChhhH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA-QEKRLDALLICATEVFIYLEENLKLTPQ--------NLSDKAIALDEL 159 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~-~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~--------TLSDks~~~EE~ 159 (1843)
..+++-+.-.-+++..|...|..++...-.. ++.+.. +....++..+.+.|+.... .|..-....+|.
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~---v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA---VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH---HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH---HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH
Confidence 3455555555677888888888888765322 122222 2233455555555532100 000000000100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhh----------hHhhhcc--chhHHhhhc
Q 043255 160 EEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSF----------SEKLFSD--HKYFLDFLK 227 (1843)
Q Consensus 160 EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~----------~e~lf~~--~k~fW~~~k 227 (1843)
|.....-.++..|+..+.. +.. ...++.+... ...+... -..+-.+++
T Consensus 311 -----~~~i~~~~~i~~Lv~lL~~------~~~---------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~ 370 (780)
T 2z6g_A 311 -----KLIILASGGPQALVNIMRT------YTY---------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370 (780)
T ss_dssp -----HHHHHTTTHHHHHHHHHTT------CCC---------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTT
T ss_pred -----HHHHHHcCCHHHHHHHHhc------CCH---------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHc
Confidence 0000111223333333311 000 0000000000 0011110 023455667
Q ss_pred cCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 228 SQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 228 ~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
+.++.+++.....|..++...+... ....+.+.++..+...++.+....-.++-.+...
T Consensus 371 ~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 371 DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 7788888888888888887765432 2345667777888877777666655566666553
No 152
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=57.44 E-value=27 Score=36.25 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-c---ccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-S---ANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~---~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
-+.+|++++++.. ....+.+.... . -.+..+++. -+ +....+.|++|++||..+++|.+..++
T Consensus 10 RL~kEl~~l~~~~-~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 82 (138)
T 1jat_B 10 RLLEELEKGEKGF-GPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI 82 (138)
T ss_dssp HHHHHHHHHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred HHHHHHHHHHhcC-CCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccc
Confidence 4567888886531 24456666632 1 346666655 22 245799999999999999999887654
No 153
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=56.75 E-value=28 Score=36.91 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK-SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
.-+.+|+..+++. ....+.+.... +-.+..++..-- +....+.|.||++||..++.|.+...
T Consensus 8 ~RL~kE~~~l~~~--~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 8 KRIIKETEKLVSD--PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp HHHHHHHHHHHHS--CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHHhC--CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence 3467788888753 34566666533 234455555421 23578999999999999999987643
No 154
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=56.57 E-value=32 Score=37.00 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.+.... +-.+..++..- + .....+.|.||++||..+++|.+...
T Consensus 8 RL~kEl~~l~~~--~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 8 RLKRELHMLATE--PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence 466788888753 34567776543 34566666553 2 23579999999999999999988654
No 155
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=56.48 E-value=29 Score=37.21 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEE-ecC-----CceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYT-KDE-----TKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~-ide-----~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+... .+-.+..+++. -++ ....+.|.||++||..++.|.+..+
T Consensus 23 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 23 RIHKELNDLARD--PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp HHHHHHHHHHSS--CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 456788888653 3455666653 23456666665 222 3478999999999999999988654
No 156
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=56.28 E-value=28 Score=36.97 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec------cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK------SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~------~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
-|.+|+..+++. ....+.+.... +-.+..++..- + .....+.|.||++||..++.|.+..
T Consensus 8 RL~kE~~~l~~~--~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 8 RLQEERKKWRKD--HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp HHHHHHHHHHHC--CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred HHHHHHHHHHhC--CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 466788888753 23455555432 23344444442 2 2347899999999999999998764
No 157
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=55.66 E-value=31 Score=38.74 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeecccc---ccC---
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRSL---GIS--- 1750 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~v---gvs--- 1750 (1843)
-|.+|+..+++. ....+.+... .+-.+..++..-- .....+.|.||++||..+++|.+..++ .|.
T Consensus 27 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~ 104 (216)
T 2pwq_A 27 RLQKELKDIENE--NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQT 104 (216)
T ss_dssp HHHHHHHHHHHS--CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTT
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCC
Confidence 466788888753 2345666653 2345666666522 235799999999999999999885432 121
Q ss_pred --------HHHH------HHHHHHHHHHHHhcccc---HHHHHHHHHHh
Q 043255 1751 --------EVKQ------RKWLMSMMLFVRNQNGA---LAEAIRIWKRN 1782 (1843)
Q Consensus 1751 --------e~k~------r~Wll~~~~~i~~qnGs---i~d~l~~~k~n 1782 (1843)
.++| +.-+++++.++...|-. -.++-.+|++|
T Consensus 105 G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d 153 (216)
T 2pwq_A 105 GAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKEN 153 (216)
T ss_dssp CBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHC
T ss_pred CEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence 1223 34567777777665432 23444555544
No 158
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=55.56 E-value=35 Score=36.48 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe--ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS--KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~--~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+... .+-.+..+...-- +....+.|.||++||..+++|.+...
T Consensus 8 RL~kEl~~l~~~--~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 8 RLLKELQQLIKD--SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 467788888753 3445666543 2345556655422 23578999999999999999988654
No 159
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=55.56 E-value=25 Score=38.31 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhccCCCCceEEE-Eec-cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLT-VSK-SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vk-v~~-~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.+. ++. +-.+..++..-- ...+.+.|.||++||..+++|.+...
T Consensus 11 RL~kEl~~l~~~--~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 11 ALLLELKGLQEE--PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence 577888888753 24457766 332 345666666522 23478999999999999999988654
No 160
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=55.54 E-value=25 Score=37.48 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-c-cccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-K-SANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~-~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.+... . +-.+..++.. -+ .....+.|.||++||..+++|.+...
T Consensus 7 RL~kEl~~l~~~--~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 7 RLMAEYKQLTLN--PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence 467788888753 3445666542 2 3456666665 22 23478999999999999999987643
No 161
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=55.43 E-value=34 Score=36.09 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+... .+-.+..++.. -+ .....+.|.+|++||..++.|.+..+
T Consensus 8 RL~kEl~~l~~~--~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 8 RIQKELREIQQD--PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence 356788888753 2345666653 23456666665 22 24578999999999999999987654
No 162
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=53.95 E-value=36 Score=36.02 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhccCCCCceEE-EEe-ccccEEEEEEEecC-----CceEEEEecCCCCCCCcceEeeccc
Q 043255 1682 PPLIANELSQIKKANIADENFSL-TVS-KSANEVVATYTKDE-----TKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1682 p~li~~el~~v~~~~~~~~~~~V-kv~-~~~~EV~a~Y~ide-----~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-.-+.+|++.+++. ....+.+ ... .+-.+..+++.-++ ....+.|.||++||..++.|.+...
T Consensus 6 ~~RL~kEl~~l~~~--~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 6 SMRVVKELEDLQKK--PPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp HHHHHHHHHHHHHS--CCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence 34567889888763 2345666 332 23456666665222 2368999999999999999988654
No 163
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.48 E-value=10 Score=38.16 Aligned_cols=37 Identities=24% Similarity=0.652 Sum_probs=26.3
Q ss_pred cCCCcccccccccccc----cCcccccccccccCCccCHhhHH
Q 043255 1787 FEGVEECPICYSVIHT----ANHSLPRLACKTCKHKFHSACLY 1825 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~----~d~~lP~~~C~~C~h~FH~~CL~ 1825 (1843)
......|.+|...=.. ....| +.|..|++.||..||.
T Consensus 2 v~p~~~C~~C~~~~~~~~~g~~~~L--l~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 2 MEPIPICSFCLGTKEQNREKKPEEL--ISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCCSSBTTTCCCTTCCTTSCCCCC--EECTTTCCEECHHHHT
T ss_pred CccCccccccCCchhhCcCCCchhc--eEhhhcCCCCCCchhc
Confidence 3456689999875321 11223 6899999999999995
No 164
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=53.12 E-value=36 Score=37.59 Aligned_cols=61 Identities=23% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-|..|+..++.. ....+.+... .+-.+..+++.-- ...+.+.|.||++||..++.|.+..+
T Consensus 52 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 52 RIQKELADITLD--PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC
Confidence 456788888653 2345666543 2345566655421 34579999999999999999988654
No 165
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=53.08 E-value=39 Score=36.43 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEec------CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTKD------ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~id------e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|++.+++. ....+.+.... +-.+..+++.-- .....+.|.||++||..+++|.+..+
T Consensus 8 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 8 RLMRDFKRMKED--APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC
Confidence 456788888753 23456665442 234444554421 23478999999999999999988653
No 166
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=53.02 E-value=28 Score=37.55 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+..|+..+++. ....+.+... .+-.+..+++. -+ ...+.+.|.||++||..+++|.+..+
T Consensus 27 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 27 LLHRDFCDLKEN--NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp HHHHHHHHHHHH--CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence 456778777653 2345555543 33456666665 22 24579999999999999999988653
No 167
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=52.32 E-value=42 Score=35.73 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec----cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK----SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~----~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
-+.+|++.+++.. ....+.+.... +-.+..+++.- + .....+.|+||++||..+++|.+..++
T Consensus 25 RL~kEl~~l~~~~-~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 25 RLLDELERGQKGN-VSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp HHHHHHHHHHCC--CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred HHHHHHHHHHhCC-CCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 4567888777531 24566666532 13566666652 2 235799999999999999999887553
No 168
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=52.03 E-value=36 Score=37.08 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
-+.+|+..+++. ....+.+.... +-.+..+++.- + ...+.+.|.||++||..++.|.+...+
T Consensus 34 RL~kEl~~l~~~--~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 102 (179)
T 1i7k_A 34 RLQQELMTLMMS--GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC 102 (179)
T ss_dssp HHHHHHHHHHHH--CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC
Confidence 456677777653 23456655432 23444455442 1 235789999999999999999886543
No 169
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.78 E-value=21 Score=34.79 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=41.2
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
...|-||-+.+.....--|-..|+.|+-.....|..-=.+ .++..||-|..++
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrY 68 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRY 68 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCcc
Confidence 3589999999876444447789999999999999854333 4678999998764
No 170
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.04 E-value=4.7 Score=34.87 Aligned_cols=46 Identities=28% Similarity=0.701 Sum_probs=30.7
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhc--CCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~~stCPlCR~ 1841 (1843)
.|.||...=.. ..+ +.|..|...||..|+..=+.. .+.=.||.|+.
T Consensus 2 ~C~vC~~~~~~--~~l--l~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED--DKL--ILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC--SCC--EECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC--CCE--EECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765321 222 679999999999999532221 12336999986
No 171
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=50.80 E-value=32 Score=37.56 Aligned_cols=58 Identities=16% Similarity=0.352 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccCCCCceEEEEeccccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSKSANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+.+++.. .+.|....+-.+..+++.- + .....+.|.||++||..++.|.+..+
T Consensus 29 RL~kEl~~l~~~-----g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 29 RMDTDVIKLIES-----KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp HHHHHHHHHHHS-----SSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHhcCcC-----CCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 345677766542 2334333334566665542 2 23578999999999999999988653
No 172
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=50.72 E-value=6.3 Score=36.24 Aligned_cols=33 Identities=27% Similarity=0.764 Sum_probs=25.3
Q ss_pred CCcccccccccccccCccccccccc-ccCCccCHhhH
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACK-TCKHKFHSACL 1824 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~-~C~h~FH~~CL 1824 (1843)
....|++|...+.. +. .-..|. .|+.-||..|+
T Consensus 7 ~~~~C~~C~~p~~~-~~--~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVND-DQ--DAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCT-TS--CEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCC-CC--CeEecccCccccCchhcc
Confidence 45689999998764 32 236899 99999999997
No 173
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=50.59 E-value=1.6e+02 Score=39.98 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=44.4
Q ss_pred hhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCc
Q 043255 45 IIPQWAFEYKRLLL-DYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSN 102 (1843)
Q Consensus 45 iLp~W~~lY~rLsi-D~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~ 102 (1843)
+.+.|.-+-.-+.. ..+..||+.+-.++..++...|..+.|+|++++..++ ..|++.
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-~~~~~~ 754 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-NSIDMN 754 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-HHCCTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-hcCCHH
Confidence 34444444444442 5789999999999999999999999999999999999 445544
No 174
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=49.81 E-value=37 Score=37.23 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhccCCCCceEEEEec-cccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1683 PLIANELSQIKKANIADENFSLTVSK-SANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1683 ~li~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
.-+.+|+..+++. ....+.+.... +-.+..++.. -+ +....+.|.||++||..++.|.+..
T Consensus 17 ~RL~kEl~~l~~~--~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T 84 (187)
T 2f4w_A 17 QRLKQDYLRIKKD--PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 84 (187)
T ss_dssp HHHHHHHHHHHHS--CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred HHHHHHHHHHHhC--CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccC
Confidence 3567788888753 23456665432 2344445544 12 3457899999999999999998754
No 175
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.62 E-value=3.1 Score=41.70 Aligned_cols=27 Identities=30% Similarity=0.743 Sum_probs=18.9
Q ss_pred ccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1810 LACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1810 ~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+|..||+.| ..+ ....+.||-|++.+
T Consensus 68 ~~C~~CG~~F----~~~---~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVF----KAE---INIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBC----CCC---SSCCSSCSSSCCCC
T ss_pred cChhhCcCee----ccc---CCCCCCCcCCCCCc
Confidence 4799999999 111 11247899999863
No 176
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=49.15 E-value=1.8e+02 Score=33.73 Aligned_cols=187 Identities=12% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHh--chhhhhhhhhhhhhHhh-cccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHH
Q 043255 64 VRRATHEMMTSLVITV--GRDLAPHLKSLMGPWWF-SQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEE 140 (1843)
Q Consensus 64 VRe~ah~~~~~l~~~~--gK~lap~Lk~l~g~Wl~-~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d 140 (1843)
-|..|-..+..++... +..+.. -..+++++. -...+++.|...|..++..+-..+.+..+.+. ....+..+..
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~--~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv--~~g~l~~Ll~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQ--LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL--GLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHH--cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH--HCCCHHHHHH
Confidence 4555555555555321 222211 123445555 55678999999999999877655444444332 2356666666
Q ss_pred HhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccch
Q 043255 141 NLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHK 220 (1843)
Q Consensus 141 ~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k 220 (1843)
.|+..+. ..+...++.+|+.+...-++ ....++. . ..+ .
T Consensus 132 LL~~~~~----------------~~v~~~A~~ALsnl~~~~~~--------------------~~~~~~~-~-ggi---~ 170 (296)
T 1xqr_A 132 LLDRDAC----------------DTVRVKALFAISCLVREQEA--------------------GLLQFLR-L-DGF---S 170 (296)
T ss_dssp HHHHCSC----------------HHHHHHHHHHHHHHHTTCHH--------------------HHHHHHH-T-THH---H
T ss_pred HHccCCC----------------HHHHHHHHHHHHHHHcCCcH--------------------HHHHHHH-C-CCH---H
Confidence 6642221 12344566666665521100 0000110 0 111 1
Q ss_pred hHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCcee
Q 043255 221 YFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWT 295 (1843)
Q Consensus 221 ~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~ 295 (1843)
.+-.+++++++.||+.+..+|..++...|+....-.-.-+.+.++..|..+++.+....-.++-.+.+..|+.+.
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~ 245 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHH
Confidence 245567788999999999999999987654321000012456666778888999999999999888877555553
No 177
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=49.10 E-value=38 Score=37.37 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccC-----------CCCceEEEEec-cccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1684 LIANELSQIKKANI-----------ADENFSLTVSK-SANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1684 li~~el~~v~~~~~-----------~~~~~~Vkv~~-~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
-|.+|++.+++... .+..+.|.... +-.+..++..- + ...+.+.|.||++||..++.|.+..
T Consensus 36 RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 115 (193)
T 2f4z_A 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT 115 (193)
T ss_dssp HHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEec
Confidence 45567777765321 12456666532 23444555442 2 2357899999999999999998865
Q ss_pred c
Q 043255 1746 S 1746 (1843)
Q Consensus 1746 ~ 1746 (1843)
.
T Consensus 116 ~ 116 (193)
T 2f4z_A 116 K 116 (193)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=48.99 E-value=6.5e+02 Score=34.05 Aligned_cols=274 Identities=13% Similarity=0.074 Sum_probs=136.2
Q ss_pred HHHHHHHHhhhc------CChhhHHHHHHHHHHHH---hccCcCcccchhhhHHHHHH-hhhcCCCHHHHHHHHHHHHHH
Q 043255 6 SEVAQHLKRLAR------KDPITKLKALSSLSALL---KEKSGKDIAPIIPQWAFEYK-RLLLDYSREVRRATHEMMTSL 75 (1843)
Q Consensus 6 ~ev~v~lKkL~K------KD~tTK~KALqeL~~lv---~~~~~~~l~~iLp~W~~lY~-rLsiD~~RrVRe~ah~~~~~l 75 (1843)
|.+...+-+|.+ .-+..+.-+++-+..|. ..+ ++-+..+|+. +.. |-..|++.+||..|-.++..+
T Consensus 489 p~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~---ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 489 TVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEY---FVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp CHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHH---HTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHH---HhccccccCCChhHHHHHHHHHHHH
Confidence 345555555532 23445555666665543 332 2334444432 222 244578899999999999999
Q ss_pred HHHhchhhhhhhhhhhhhH---hhcccCCc----------HHH-----------HHHHHHHHHhhCC-ChhhHHHHHHHH
Q 043255 76 VITVGRDLAPHLKSLMGPW---WFSQFDSN----------SEV-----------SQAAKRSLQAAFP-AQEKRLDALLIC 130 (1843)
Q Consensus 76 ~~~~gK~lap~Lk~l~g~W---l~~~~D~~----------~~V-----------A~aA~~sf~~~Fp-~~eKr~~a~~~c 130 (1843)
++.+++.+.||+..++..- +...+.+. ..+ --.|-..+-.+-+ +.+++.+.+.--
T Consensus 565 ~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~l 644 (980)
T 3ibv_A 565 VKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSL 644 (980)
T ss_dssp HHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999887543 33223221 111 1112222233333 245665554433
Q ss_pred HHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhh
Q 043255 131 ATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVS 210 (1843)
Q Consensus 131 q~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~ 210 (1843)
-..++.-+...+...+ ..+++ .+ -+...+.+++.+.+.+.+. . . ...+ .... -+.
T Consensus 645 l~pl~~~l~~~l~~~~-------~~~~~-~~----~i~~~i~al~~lakgf~~~--~-----~-~~~p-~~~~-f~~--- 699 (980)
T 3ibv_A 645 INALIGKANAALSSDL-------SALEN-II----SVYCSLMAIGNFAKGFPAR--G-----S-EEVA-WLAS-FNK--- 699 (980)
T ss_dssp HHHHHHHHHHHHTTSC-------C--CH-HH----HHHHHHHHHHHHHHTSCSC--C-------CCCS-HHHH-HHH---
T ss_pred HHHHHHHHHHHHhhcc-------cCccH-HH----HHHHHHHHHHHHhccCCcc--c-----C-CCCc-HHHH-HHH---
Confidence 3444444444442211 11122 12 2334566677666554210 0 0 0001 0000 000
Q ss_pred hhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcC
Q 043255 211 FSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRF 290 (1843)
Q Consensus 211 ~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~ 290 (1843)
..+.++. .+=+ -.++..||.++..+++.++......+.+ .++.+...++..+. +.-+.++...+=.+..+|
T Consensus 700 ~~~~il~---~l~~--~~~~~~irea~~~~~~r~i~~lg~~~~p-~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~f 770 (980)
T 3ibv_A 700 ASDEIFL---ILDR--MGFNEDIRGAVRFTSGRIINVVGPDMLP-KVPQLISILLNSID---MNELVDVLSFISQLIHIY 770 (980)
T ss_dssp HHHHHHH---HHHH--SCCSHHHHHHHHHHHHHHTTTTHHHHTT-THHHHHHHHHHHCC---TTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---HHHh--cCCcHHHHHHHHHHHHHHHHHccHhHHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHH
Confidence 1111111 0101 1467899999999999999887555543 45666666664333 444566666655566666
Q ss_pred CCc-eeec-CcchhhhHHHHHHHHccCCC
Q 043255 291 PDC-WTVL-NAQKTILNRFWHFLKNGCFG 317 (1843)
Q Consensus 291 Pd~-W~~~-n~kK~~lprL~~~Lr~G~~G 317 (1843)
.+- .... +.-.+++.|..++|..+..|
T Consensus 771 ~~~~~~~l~~ll~~l~~~if~~l~~~~~~ 799 (980)
T 3ibv_A 771 KDNMMEITNRMLPTLLMRIFSSLSAAPQG 799 (980)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 543 2111 22344556666666665544
No 179
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=48.81 E-value=4 Score=38.13 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=32.2
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhcC--CCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--HKSSCPLCQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--~~stCPlCR~ 1841 (1843)
..|+||-..-.. .. -+.|..|..-||..|+.--.... +.-.||.|+.
T Consensus 19 ~~C~~C~~~~~~--~~--mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 19 WICPGCNKPDDG--SP--MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp ECBTTTTBCCSS--CC--EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred cCCCCCCCCCCC--CC--EEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 359999876431 12 26899999999999996433221 2347999964
No 180
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=48.74 E-value=4.2 Score=36.74 Aligned_cols=46 Identities=33% Similarity=0.774 Sum_probs=32.3
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhc--CCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SHKSSCPLCQSP 1842 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~~stCPlCR~~ 1842 (1843)
...|.||... + .+ +.|..|...||..|+..=+.. .+.=.||.|+..
T Consensus 9 ~~~C~vC~~~---g--~l--l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG---G--EL--LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC---S--SC--BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC---C--CE--EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4569999752 2 23 689999999999999743332 123469999864
No 181
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=47.23 E-value=6e+02 Score=33.25 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=66.5
Q ss_pred CHHHHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhc-hhh
Q 043255 5 DSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVG-RDL 83 (1843)
Q Consensus 5 D~ev~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~g-K~l 83 (1843)
+|.+...+++|..-+.--|..|++.+. +... ..+ .-..|+.+..-|. +.+..||+.|-.+++.|...-. +..
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~-~~~~---~~i--~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLIN-YQDD---AEL--ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ------------CCSCHHHHHHHHHHH-HHHH---HHH--HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHH-hhhH---HHH--HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 445566777887777777777777765 3322 122 1345555555444 7899999999999999875321 111
Q ss_pred hhhhhhhhhhHhhccc-CCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHh
Q 043255 84 APHLKSLMGPWWFSQF-DSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENL 142 (1843)
Q Consensus 84 ap~Lk~l~g~Wl~~~~-D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~L 142 (1843)
....+.++++-+-.+. +.+..+.+.|..++...-..++.+ ..+....++..+.+.|
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~---~~i~~~g~I~~Lv~lL 243 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL---LAIFKSGGIPALVNML 243 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH---HHHHHTTHHHHHHHHT
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH---HHHHHcCCHHHHHHHH
Confidence 1112234444333333 358888888888888754332222 2233345666666665
No 182
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=46.93 E-value=58 Score=34.86 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCCCCceEEEE-ecc---ccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1684 LIANELSQIKKANIADENFSLTV-SKS---ANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv-~~~---~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
-+.+|++++++.. .+..+.+.. +.+ -.+..++..- + .....+.|+||++||..+++|.+..++
T Consensus 29 RL~kEl~~l~~~~-~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 101 (160)
T 2a4d_A 29 RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101 (160)
T ss_dssp HHHHHHHHHHSCC-TTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred HHHHHHHHHHhCC-CCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence 4567888887531 122355554 222 3466666652 2 235799999999999999999887654
No 183
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=45.73 E-value=1.6e+02 Score=39.89 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=47.9
Q ss_pred cCChhhHHHHHHHHHHHHhccCc-Cc----c----cchhhhHHHHHHhhhcC-----CCHHHHHHHH--HHHHHHHHHhc
Q 043255 17 RKDPITKLKALSSLSALLKEKSG-KD----I----APIIPQWAFEYKRLLLD-----YSREVRRATH--EMMTSLVITVG 80 (1843)
Q Consensus 17 KKD~tTK~KALqeL~~lv~~~~~-~~----l----~~iLp~W~~lY~rLsiD-----~~RrVRe~ah--~~~~~l~~~~g 80 (1843)
+-|.-.....++.+..++...+. +. + ..++..|..+-...... ....+++.+. .+...++.+.|
T Consensus 600 ~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 600 DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33555666777888887765542 21 2 33555687765543321 1234555543 35667788999
Q ss_pred hhhhhhhhhhhhhHh
Q 043255 81 RDLAPHLKSLMGPWW 95 (1843)
Q Consensus 81 K~lap~Lk~l~g~Wl 95 (1843)
+.+.|++..++..-+
T Consensus 680 ~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 680 ADFYPQLGHIYYNML 694 (1049)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776543
No 184
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=45.15 E-value=5 Score=36.24 Aligned_cols=46 Identities=28% Similarity=0.715 Sum_probs=33.0
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhc--CCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~~stCPlCR~ 1841 (1843)
....|.||... + .+ +.|..|...||..|+..=+.. .+.=.||.|+.
T Consensus 10 ~~~~C~vC~~~---g--~l--l~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---G--EI--ILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---S--SE--EECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---C--cE--EECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34579999862 2 23 679999999999999864332 23447999975
No 185
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.90 E-value=7.3 Score=35.36 Aligned_cols=51 Identities=22% Similarity=0.543 Sum_probs=35.0
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHh-----cCCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFS-----TSHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~-----~s~~stCPlCR~ 1841 (1843)
+...|.||.......+..| +.|..|...||..|+..=+. ..+.=.||.|+.
T Consensus 5 ~~~~C~vC~~~~~~~~~~l--l~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEM--VICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCE--EECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCE--EECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 4567999997654333444 78999999999999875322 123446887753
No 186
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.33 E-value=4.6 Score=37.77 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=34.7
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQ 1840 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR 1840 (1843)
.......|.||...-...+..+ +.|..|...||..|+.-=..-.+.=.||.|+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~l--l~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVI--LFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCE--EECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCE--EECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 3445678999987532222333 7899999999999996422222334688775
No 187
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=43.04 E-value=49 Score=35.40 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEe--ccccEEEEEEEec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTVS--KSANEVVATYTKD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~--~~~~EV~a~Y~id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+..+++. ....+.|... .+-.+..+..--. .....+.|.||++||..++.|.+...
T Consensus 18 RL~kEl~~l~~~--~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 18 LLVKEVAELEAN--LPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp HHHHHHHHHGGG--SCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred HHHHHHHHHHhC--CCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence 367788888753 2345666532 1233444444322 23578999999999999999987643
No 188
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.02 E-value=6.7 Score=39.26 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=31.8
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhc--CCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SHKSSCPLCQ 1840 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~~stCPlCR 1840 (1843)
....|.||...=.. . +-+.|..|.+.||..||...... .+.=.||-|+
T Consensus 6 ~~~~C~~C~~~g~~--~--~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL--L--DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT--T--TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC--c--CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35679999875221 1 22689999999999999876542 1233455543
No 189
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=41.13 E-value=15 Score=36.74 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
..++-|.-.|+..|..|..-|..+-. ...++.-. ++.-|.+..||..+-..++.+- .+...|.|..
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a~~~L~----~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~ 111 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLI----KLLEDDSGFVRSGAARSLEQIG---GERVRAAMEK 111 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHH----HHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCC-------HHHHHHHH----HHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHH
Confidence 33444445566666666665544311 11122111 1223777888888777766553 1222232222
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
..-|++..|..+|..++.
T Consensus 112 -------~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 112 -------LAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -------HTTSCCTHHHHHHHHHGG
T ss_pred -------HHhCCCHHHHHHHHHHHH
Confidence 234777778777777764
No 190
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=41.02 E-value=1.9e+02 Score=35.84 Aligned_cols=190 Identities=11% Similarity=0.146 Sum_probs=109.8
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcC--cc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh-hh
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGK--DI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL-KS 89 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~--~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L-k~ 89 (1843)
|.-.|+..+..|+.-|..++...+.. .+ .++++.... +.-+++..||+.+-.+++.|...........+ ..
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~----LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS----LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH----HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHH----HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 44566778888888888876532211 11 445555443 44588999999999998888753322222211 23
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQAAFP--AQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVI 167 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp--~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVv 167 (1843)
++++.+.-+.+.+..|...|..++..+-. +++ ....++...++..+.+.|. +++ .+++
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~---~~~~l~~~g~i~~L~~LL~-~~d----------------~~i~ 437 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLS-AKD----------------TKII 437 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHGGG-CSC----------------HHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH---HHHHHHHCcCHHHHHHHhc-CCC----------------HHHH
Confidence 66666666678888888888888875432 221 2223445556666665552 111 2577
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 168 SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
..+|.+|..+++... +. ...++ .. ..+. .. ..-+.+-.+..|++..|+...+.+|-.+...
T Consensus 438 ~~~L~aL~nil~~~~--~~--------~~~~~----~~-~~ie---e~-ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 438 QVILDAISNIFQAAE--KL--------GETEK----LS-IMIE---EC-GGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHHHH--TT--------TCHHH----HH-HHHH---HT-TCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhH--hc--------cChHH----HH-HHHH---HC-CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 778888888886531 11 00011 00 0111 10 1112344556789999999999999888754
No 191
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=40.82 E-value=52 Score=36.30 Aligned_cols=101 Identities=19% Similarity=0.328 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcc-CCCCceEEEEe-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecccc---ccC-
Q 043255 1683 PLIANELSQIKKAN-IADENFSLTVS-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSL---GIS- 1750 (1843)
Q Consensus 1683 ~li~~el~~v~~~~-~~~~~~~Vkv~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~v---gvs- 1750 (1843)
.=|.+|+.++++.. .....+.+... .+-.+..++.. -+ .....+.|.||++||..+++|.+..++ .|+
T Consensus 8 ~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 87 (201)
T 3k9o_A 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 87 (201)
T ss_dssp HHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcC
Confidence 34678888886521 11345666653 33466666665 22 234789999999999999999876432 111
Q ss_pred ----------HHH------HHHHHHHHHHHHHhcccc---HHHHHHHHHHhc
Q 043255 1751 ----------EVK------QRKWLMSMMLFVRNQNGA---LAEAIRIWKRNF 1783 (1843)
Q Consensus 1751 ----------e~k------~r~Wll~~~~~i~~qnGs---i~d~l~~~k~nv 1783 (1843)
.++ .++.+++++.++...|-. -.++-.+|+.|-
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~ 139 (201)
T 3k9o_A 88 VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP 139 (201)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred CCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCH
Confidence 122 335667777777665432 244555555543
No 192
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.31 E-value=13 Score=36.18 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.2
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHH
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKW 1827 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kW 1827 (1843)
-.|+||.+.+.. -|.+.|.+|+|.|-..|+..+
T Consensus 4 ~~C~~C~~~~~~----~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQ----DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCC----BCCEEETTTTEEECHHHHHHH
T ss_pred CCCcCCCCCCCC----CceEECCcCChHHhHHHCHHH
Confidence 479999975321 156789999999999999983
No 193
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=39.20 E-value=46 Score=36.46 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcc-CCCCceEEEEe-ccccEEEEEEEe--cC----------------CceEEEEecCCCCCCCcceEee
Q 043255 1684 LIANELSQIKKAN-IADENFSLTVS-KSANEVVATYTK--DE----------------TKMDLIIRLPASYPLRPVDVEC 1743 (1843)
Q Consensus 1684 li~~el~~v~~~~-~~~~~~~Vkv~-~~~~EV~a~Y~i--de----------------~~~el~I~lP~~YPL~~v~V~~ 1743 (1843)
-+.+|+..+++.. .....+.+... .+-.+..++..- .+ ..+.+.|.||++||..++.|.+
T Consensus 31 RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f 110 (186)
T 1zuo_A 31 RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRV 110 (186)
T ss_dssp HHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEE
Confidence 4566777776421 01344666533 233444555442 11 3578999999999999999976
Q ss_pred cc
Q 043255 1744 MR 1745 (1843)
Q Consensus 1744 ~~ 1745 (1843)
..
T Consensus 111 ~t 112 (186)
T 1zuo_A 111 VL 112 (186)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 194
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=39.02 E-value=44 Score=38.38 Aligned_cols=100 Identities=19% Similarity=0.327 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcc-CCCCceEEEEe-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecccc---ccC--
Q 043255 1684 LIANELSQIKKAN-IADENFSLTVS-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSL---GIS-- 1750 (1843)
Q Consensus 1684 li~~el~~v~~~~-~~~~~~~Vkv~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~v---gvs-- 1750 (1843)
-|..|+.+++... .....+.|... .+-.+..+++. -+ ...+.+.|.||++||..++.|.+..++ .|+
T Consensus 61 RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~ 140 (253)
T 3e46_A 61 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 140 (253)
T ss_dssp HHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCC
Confidence 4677888886521 12345666653 34566666665 22 234789999999999999999875432 111
Q ss_pred ---------HH------HHHHHHHHHHHHHHhcccc---HHHHHHHHHHhc
Q 043255 1751 ---------EV------KQRKWLMSMMLFVRNQNGA---LAEAIRIWKRNF 1783 (1843)
Q Consensus 1751 ---------e~------k~r~Wll~~~~~i~~qnGs---i~d~l~~~k~nv 1783 (1843)
.+ ..++-+++++.++...|-. -.|+-.+|+.|-
T Consensus 141 ~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~ 191 (253)
T 3e46_A 141 TGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP 191 (253)
T ss_dssp TCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred CCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCH
Confidence 12 2345667777777665432 245555665554
No 195
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=39.01 E-value=1.3e+02 Score=37.27 Aligned_cols=190 Identities=11% Similarity=0.160 Sum_probs=108.9
Q ss_pred hhcCChhhHHHHHHHHHHHHhccCcCc--c--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh-hh
Q 043255 15 LARKDPITKLKALSSLSALLKEKSGKD--I--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL-KS 89 (1843)
Q Consensus 15 L~KKD~tTK~KALqeL~~lv~~~~~~~--l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L-k~ 89 (1843)
|...++..+..|+..|..++...+... + .++++. +.++.-+++..||+.+-.+++.|............ ..
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~----L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g 358 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV----FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG----CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred hcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHH----HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC
Confidence 344566677778887777764321111 1 334433 23445588999999999999888753322222211 24
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQAAFP--AQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVI 167 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp--~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVv 167 (1843)
++++.+..+.+.+..|.+.|..++..+-. +.+ ....+++..++..+.+.|+ +++ .+++
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~---~~~~L~~~g~i~~L~~LL~-~~d----------------~~i~ 418 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLS-AKD----------------TKII 418 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHTTCHHHHHHGGG-CSC----------------HHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHH---HHHHHHHCCCHHHHHHHhc-CCC----------------HHHH
Confidence 66777777778889999988888875432 221 2223445566666665553 111 2577
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHHhc
Q 043255 168 SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN 247 (1843)
Q Consensus 168 ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~ 247 (1843)
..+|.+|..+++... +.+ ..++ .+ ..+. .. ..-+.+=.+-.|++..|++..+.+|-.++..
T Consensus 419 ~~~L~aL~nil~~~~--~~~--------~~~~----~~-~~ie---e~-ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 419 QVILDAISNIFQAAE--KLG--------ETEK----LS-IMIE---EC-GGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHHHHHHHHHHH--TTT--------CHHH----HH-HHHH---HT-THHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhH--hcc--------chHH----HH-HHHH---Hc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 778888888886531 111 0011 00 0111 10 1112344556789999999999999888753
No 196
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.71 E-value=6.4 Score=38.20 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=34.5
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQS 1841 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~ 1841 (1843)
.+....|.||...-...+..| +.|..|...||..|+.-=..-.+.=-||.|+.
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~l--l~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVI--LFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEE--EECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCE--EECCCCCchhhcccCCCCccCCCceECccccC
Confidence 345568999987532122233 78999999999999964222223446887753
No 197
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.87 E-value=4.5e+02 Score=28.98 Aligned_cols=52 Identities=12% Similarity=-0.138 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCC
Q 043255 58 LDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPA 119 (1843)
Q Consensus 58 iD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~ 119 (1843)
-|++..||..+...++.+. .. ..+++-.....|++..|...|..++...-..
T Consensus 33 ~~~~~~vr~~A~~~L~~~~---~~-------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRG---GQ-------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHC---CH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HcCCHHHHHHHHHHHHccC---Cc-------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4889999999988887664 22 2333334445789999999999999877644
No 198
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=37.48 E-value=1.7e+02 Score=35.08 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=86.1
Q ss_pred HhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhhhhh
Q 043255 13 KRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKSLMG 92 (1843)
Q Consensus 13 KkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~l~g 92 (1843)
|-|+-+++.-|--||.-|..... ..+++.-.+...+...|.++-||..|--+-..+......-+..++..+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~-------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l-- 181 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITD-------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA-- 181 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCC-------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH--
T ss_pred hhcCCCcHhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH--
Confidence 45556667777777766666532 225556667778888899999999987776655543332222222211
Q ss_pred hHhhcccCCcHHHHHHHHHHHHhhCCChh----hHHHHH-------HHHHHHHHHHHHHHhccCccccCCCCCChhhHHH
Q 043255 93 PWWFSQFDSNSEVSQAAKRSLQAAFPAQE----KRLDAL-------LICATEVFIYLEENLKLTPQNLSDKAIALDELEE 161 (1843)
Q Consensus 93 ~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e----Kr~~a~-------~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~Ea 161 (1843)
--..+|+++.|...|..++...=..+. |....+ -+.|-+++.++.....++ .+++++.
T Consensus 182 --~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d---------~~~~~~~ 250 (355)
T 3tjz_B 182 --QEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE---------DGSRDSP 250 (355)
T ss_dssp --HHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------
T ss_pred --HHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc---------chhhHHH
Confidence 223678898888888887776543221 001110 122333444432111111 0122333
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCC
Q 043255 162 MHQQVI-----------SSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQS 230 (1843)
Q Consensus 162 KY~RVv-----------ssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~ 230 (1843)
.++++. ..+..++..+-. . +.. .+. .. ...+-.|+++++
T Consensus 251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~--------~~~-----------~~~-------~a---~~~L~~fLss~d 300 (355)
T 3tjz_B 251 LFDFIESCLRNKHEMVVYEAASAIVNLPG-C--------SAK-----------ELA-------PA---VSVLQLFCSSPK 300 (355)
T ss_dssp ------CCCCCSSHHHHHHHHHHHTC--------------------------------------C---CCTHHHHHHSSS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccC-C--------CHH-----------HHH-------HH---HHHHHHHHcCCC
Confidence 333332 222222222110 0 000 000 00 123556788899
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhc
Q 043255 231 VSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289 (1843)
Q Consensus 231 p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~ 289 (1843)
|.+|=++-..|..+.++.|+.+...+. -+...+.|++.+.+.- |+..|+|+
T Consensus 301 ~niryvaLr~L~~l~~~~P~~v~~~n~-----~ie~li~d~n~sI~t~---Aittllkt 351 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPSAVTACNL-----DLENLVTDANRSIATL---AITTLLKT 351 (355)
T ss_dssp SSSHHHHHHCC------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcHHHHHHHH-----HHHHHccCCcHhHHHH---HHHHhhhc
Confidence 999999999999999999988764322 3347777777665553 44444443
No 199
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=37.00 E-value=36 Score=38.18 Aligned_cols=60 Identities=18% Similarity=0.365 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEecc--ccEEEEEEEe--c----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1684 LIANELSQIKKANIADENFSLTVSKS--ANEVVATYTK--D----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv~~~--~~EV~a~Y~i--d----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
-|..|+..+++. ....+.+..... -.+..++..- + .....+.|.||++||..+++|.+..
T Consensus 6 RL~kEl~~l~~~--~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T 73 (215)
T 1tte_A 6 RIMKEIQAVKDD--PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 73 (215)
T ss_dssp HHHHHHHHHHTT--TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccC
Confidence 456788888652 223344433221 1233443321 1 2357899999999999999998754
No 200
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.88 E-value=11 Score=37.62 Aligned_cols=49 Identities=27% Similarity=0.622 Sum_probs=32.6
Q ss_pred CcccccccccccccCccccccccc-ccCCccCHhhHHHH------H--hcCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACK-TCKHKFHSACLYKW------F--STSHKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~-~C~h~FH~~CL~kW------f--~~s~~stCPlCR~ 1841 (1843)
...|+||...+.. +..+ +.|- .|..-||..|+.-= + +...+-.||.|+.
T Consensus 3 ~~~C~iC~~p~~~-~~~m--i~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVND-DQDA--ILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCT-TSCE--EECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCC-CCCE--EEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 3579999998863 3332 6787 99999999998310 1 0012347998864
No 201
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=36.29 E-value=1.1e+02 Score=32.85 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcc----------CCCCceEEEEe-ccccEEEEEEEec--------CCceEEEEecCCCCCCCcceEeecc
Q 043255 1685 IANELSQIKKAN----------IADENFSLTVS-KSANEVVATYTKD--------ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1685 i~~el~~v~~~~----------~~~~~~~Vkv~-~~~~EV~a~Y~id--------e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
|..|+..+++.. .....+.+... .+-.+..+++.-. .....+.|.||++||..++.|.+..
T Consensus 13 L~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t 92 (167)
T 4ds2_A 13 IIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVT 92 (167)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 566777775421 01345666654 3456666666522 3557899999999999999998865
Q ss_pred cc
Q 043255 1746 SL 1747 (1843)
Q Consensus 1746 ~v 1747 (1843)
.+
T Consensus 93 ~i 94 (167)
T 4ds2_A 93 PV 94 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 202
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=36.28 E-value=87 Score=33.78 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHHHhccCCCCceEEEEeccccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1685 IANELSQIKKANIADENFSLTVSKSANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
+..|+..+++... .|....+-.+..+++.- + .....+.|.||++||..+++|.+..
T Consensus 17 L~~El~~l~~~~~-----~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t 78 (171)
T 1yf9_A 17 REMDYMRLCNSTR-----KVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN 78 (171)
T ss_dssp HHHHHHHHHSSSS-----CEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHhCCC-----CCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeec
Confidence 4567777765321 23344455666666652 2 2357899999999999999998764
No 203
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.12 E-value=3.8 Score=36.29 Aligned_cols=49 Identities=31% Similarity=0.618 Sum_probs=33.4
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcC--CCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS--HKSSCPLCQSP 1842 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s--~~stCPlCR~~ 1842 (1843)
......|.||... + .+ +.|..|...||..|+..=+... +.=.||.|+++
T Consensus 6 ~~~~~~C~vC~~~---g--~l--l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~q 56 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G--QL--LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56 (56)
T ss_dssp CSSCCSCSSSCCS---S--CC--EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHCC
T ss_pred CCCCCCCccCCCC---C--eE--EEcCCCCcceECccCCCCcCCCCCCceEChhhhCc
Confidence 3445679999863 2 23 6899999999999997433321 23368888753
No 204
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.60 E-value=12 Score=33.83 Aligned_cols=50 Identities=20% Similarity=0.528 Sum_probs=34.3
Q ss_pred CCcccccccccccccCcccccccccccCCccCHhhHHHHHhc---CCCCCCCCCCC
Q 043255 1789 GVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST---SHKSSCPLCQS 1841 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~---s~~stCPlCR~ 1841 (1843)
+...|+||...... +.. -..|..|..-||..|+.---.. -.+-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~-~~~--mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAA-DEF--WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCS-SSC--EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCC-CCC--EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34579999887642 222 3689999999999998542211 13457999975
No 205
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.01 E-value=44 Score=35.20 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhh--HHHHHHhhh--------cCCCHHHHHHHHHHHHHHH
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQ--WAFEYKRLL--------LDYSREVRRATHEMMTSLV 76 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~--W~~lY~rLs--------iD~~RrVRe~ah~~~~~l~ 76 (1843)
.++|+|.+|++--|.|||+=|.-+|...++..+..+-.. -++...-.. -|...+||+.|..+...|-
T Consensus 53 ~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 53 FILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 789999999999999999999888876543221111000 011111111 1334899999999887764
No 206
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.58 E-value=1.5e+02 Score=31.11 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043255 9 AQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLK 88 (1843)
Q Consensus 9 ~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk 88 (1843)
...++.|.-.|+..|..|+..|..+-. .+ .++... ++.-|++..||..+-.+++.+.. ..
T Consensus 48 ~~L~~~l~~~~~~vr~~a~~~L~~~~~---~~----~~~~L~----~~l~d~~~~vr~~a~~aL~~~~~---~~------ 107 (201)
T 3ltj_A 48 EPLIKALKDEDAWVRRAAADALGQIGD---ER----AVEPLI----KALKDEDGWVRQSAAVALGQIGD---ER------ 107 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GG----GHHHHH----HHTTCSSHHHHHHHHHHHHHHCC---GG------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC---HH----HHHHHH----HHHcCCCHHHHHHHHHHHHHhCc---HH------
Confidence 344555556777788888887776521 11 111111 23346777777777666655421 11
Q ss_pred hhhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 89 SLMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 89 ~l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
.++.......|++..|...|..++.
T Consensus 108 -~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 108 -AVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp -GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222222334666666666655553
No 207
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=34.56 E-value=9.1 Score=37.78 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=30.0
Q ss_pred cccccccccccccCcccccccccccCCccCHhhHHHHHhc-CCCCCCCCCCC
Q 043255 1791 EECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST-SHKSSCPLCQS 1841 (1843)
Q Consensus 1791 eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~-s~~stCPlCR~ 1841 (1843)
..| ||-..... .. -+.|..|..-||..|+.-=... ...-.||.|+.
T Consensus 29 vrC-iC~~~~~~--~~--mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDD--GY--MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCS--SC--EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCC--Cc--EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 78765432 32 3789999999999998531111 01238999974
No 208
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=34.44 E-value=1.4e+02 Score=41.23 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=68.8
Q ss_pred hcCChhhHHHHHHHHHHH---HhccCcCcccchhhhHHHHHHhhhc---C--------CCHHHHHHHHHHHHHHHHHhch
Q 043255 16 ARKDPITKLKALSSLSAL---LKEKSGKDIAPIIPQWAFEYKRLLL---D--------YSREVRRATHEMMTSLVITVGR 81 (1843)
Q Consensus 16 ~KKD~tTK~KALqeL~~l---v~~~~~~~l~~iLp~W~~lY~rLsi---D--------~~RrVRe~ah~~~~~l~~~~gK 81 (1843)
.-.||..+.+++.-+.+| +..+ ++- +.+...+++..+.. | ..++||.+|..++..|...++.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~~-p~~---L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTYR-PEF---LPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGTC-GGG---HHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcC-chH---HHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346999988998865544 4433 222 33445677766542 1 4579999999999999999999
Q ss_pred hhhhhhhhhhhhHhh--cccC----CcHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043255 82 DLAPHLKSLMGPWWF--SQFD----SNSEVSQAAKRSLQAAFPAQEKRLDALL 128 (1843)
Q Consensus 82 ~lap~Lk~l~g~Wl~--~~~D----~~~~VA~aA~~sf~~~Fp~~eKr~~a~~ 128 (1843)
.+.||++.|...--. +.+. ..+-.--.|.-.+...|++.+++...+.
T Consensus 618 ~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~ 670 (1204)
T 3a6p_A 618 LVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670 (1204)
T ss_dssp HHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999999988875432 2222 1222222233333445777666655443
No 209
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.47 E-value=22 Score=37.12 Aligned_cols=50 Identities=20% Similarity=0.565 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhH
Q 043255 1771 ALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACL 1824 (1843)
Q Consensus 1771 si~d~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL 1824 (1843)
.+.+-|...++++.+ .+...|++|...+.-.+. +...|..|+|.+...|=
T Consensus 38 kL~~~l~~~k~~~~~--~~~~~C~~C~~~~g~l~~--~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 38 RLVDRLETMRKNVAG--DGVNRCILCGEQLGMLGS--ASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp HHHHHHHHHHHTCCS--CSSSBCSSSCCBCSTTSC--CEEECTTTCCEEETTSE
T ss_pred HHHHHHHHHHHHhcc--CCCccccccCCCcccccC--CCCCCCCCCcccccccC
Confidence 455666667777654 466789999999842221 35689999999988884
No 210
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=33.20 E-value=72 Score=34.44 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccCCCCceEEEE-ecc---ccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeecccc
Q 043255 1685 IANELSQIKKANIADENFSLTV-SKS---ANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRSL 1747 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv-~~~---~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~v 1747 (1843)
+.+|++.+++.. .+..+.+.. +.+ -.+..+++.- + .....+.|.||++||..+++|.+..++
T Consensus 40 L~kEl~~l~~~~-~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 111 (170)
T 2hlw_A 40 LLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111 (170)
T ss_dssp HHHHHHHHHHCC-GGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred HHHHHHHHHhCC-CCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence 455777776421 111244443 221 2355555542 2 234789999999999999999887554
No 211
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.12 E-value=11 Score=35.74 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=30.8
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHh---cCCCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFS---TSHKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~---~s~~stCPlCR~~ 1842 (1843)
-| ||-..... +. .-..|..|..-||..|+.-=-. ....-.||.|+..
T Consensus 14 ~C-~C~~~~d~-~~--~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 14 YC-LCRQPYNV-NH--FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CS-TTSCSCCS-SS--CEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred EE-EcCCccCC-CC--ceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 46 88776531 22 3378999999999999942111 1124589999863
No 212
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=32.77 E-value=85 Score=38.25 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccCCCCceEEEEec-cccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeeccccc---cC----
Q 043255 1685 IANELSQIKKANIADENFSLTVSK-SANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMRSLG---IS---- 1750 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~Vkv~~-~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~~vg---vs---- 1750 (1843)
+.+|+..+++. ....+.+.... +-.+..+++. -+ .....+.|.+|++||..+++|.+..++. |+
T Consensus 8 L~kEl~~l~~~--~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 85 (399)
T 4ddg_A 8 IHKELNDLARD--PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS 85 (399)
T ss_dssp HHHHHHHHHHS--CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred HHHHHHHHHhC--CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCe
Confidence 56788888753 23456665432 2344455554 22 2347899999999999999998754321 11
Q ss_pred ------HH------HHHHHHHHHHHHHHhcc
Q 043255 1751 ------EV------KQRKWLMSMMLFVRNQN 1769 (1843)
Q Consensus 1751 ------e~------k~r~Wll~~~~~i~~qn 1769 (1843)
.+ ..++-+++++.++...|
T Consensus 86 iCl~il~~~W~p~~~i~~vL~~i~~ll~~pn 116 (399)
T 4ddg_A 86 ISLDILRSQWSPALTISKVLLSICSLLCDPN 116 (399)
T ss_dssp BCCGGGTTSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred EeCcccccCCCccccHHHHHHHHHHHHcCCC
Confidence 11 23466777777777654
No 213
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.24 E-value=17 Score=36.95 Aligned_cols=27 Identities=33% Similarity=0.752 Sum_probs=19.3
Q ss_pred ccccccccCCccCHhhHHHHHhcCCCC-CCCCCCCC
Q 043255 1808 PRLACKTCKHKFHSACLYKWFSTSHKS-SCPLCQSP 1842 (1843)
Q Consensus 1808 P~~~C~~C~h~FH~~CL~kWf~~s~~s-tCPlCR~~ 1842 (1843)
+..+|..|||.|... .... .||.|.++
T Consensus 72 ~~~~C~~CG~~~e~~--------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN--------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC--------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC--------CCCCCcCccccCC
Confidence 356899999988862 2345 79999875
No 214
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=31.70 E-value=1.7e+02 Score=37.65 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=68.6
Q ss_pred hhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCCCChhhHHHHHHHH
Q 043255 87 LKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQV 166 (1843)
Q Consensus 87 Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RV 166 (1843)
|..++++-+.|.-|.|..|..+|-+++.-+. .+++.. .+++.+=+.|..- +.| +.+
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~--------~LL~iLWd~L~~L-DDL---SAS----------- 352 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD--------LVLEKCWKNIESE-ELI---SVS----------- 352 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH--------HHHHHHHHHHHTC-CSC---CTT-----------
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH--------HHHHHHHHHhhhh-ccc---chh-----------
Confidence 7888999999999999999999999998665 223333 4444455555211 112 111
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhHHHHHHHHHHHHH
Q 043255 167 ISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSIRSATYSVLKSYI 245 (1843)
Q Consensus 167 vssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll 245 (1843)
.++-+.+|+.|++.- . .....+ .+. .++|.|++|..+.||+|+.+.+.+++
T Consensus 353 TgSVMdLLAkL~s~p-~---------~a~~dp---------------~LV---PRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 353 KTSNLSLLTKIYREN-P---------ELSIPP---------------ERL---KDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHHHHHC-T---------TCCCCS---------------GGG---GGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHHHcCC-c---------ccccCh---------------HHH---HHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 234455666665432 0 000000 122 35999999999999999999987776
No 215
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.61 E-value=78 Score=33.66 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
..++.|...|+..|..|++.|..+-. .+ .++.... +.-|++..||..+-..++.+.. ....|.|.
T Consensus 54 ~L~~~l~~~~~~vr~~a~~aL~~~~~---~~----~~~~L~~----~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~- 118 (211)
T 3ltm_A 54 PLIKALKDEDAWVRRAAADALGQIGD---ER----AVEPLIK----ALKDEDGWVRQSAAVALGQIGD---ERAVEPLI- 118 (211)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCC---GG----GHHHHHH----HTTCSSHHHHHHHHHHHHHHCC---GGGHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhCC---HH----HHHHHHH----HHcCCCHHHHHHHHHHHHHhCc---HHHHHHHH-
Confidence 44455556677788888877776532 11 2222221 2246666777766666655421 11222222
Q ss_pred hhhhHhhcccCCcHHHHHHHHHHHH
Q 043255 90 LMGPWWFSQFDSNSEVSQAAKRSLQ 114 (1843)
Q Consensus 90 l~g~Wl~~~~D~~~~VA~aA~~sf~ 114 (1843)
....|++..|...|..++.
T Consensus 119 ------~~l~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 119 ------KALKDEDWFVRIAAAFALG 137 (211)
T ss_dssp ------HHTTCSSHHHHHHHHHHHH
T ss_pred ------HHHhCCCHHHHHHHHHHHH
Confidence 2224666666666555553
No 216
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=31.42 E-value=1.2e+03 Score=32.10 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=72.2
Q ss_pred ChhhHHHHHHHHHHHHhccC-cCc---ccchh-hhHH-HHHHhhh-cC------CCHHHHHHHHHHHHHHH----HHhch
Q 043255 19 DPITKLKALSSLSALLKEKS-GKD---IAPII-PQWA-FEYKRLL-LD------YSREVRRATHEMMTSLV----ITVGR 81 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~-~~~---l~~iL-p~W~-~lY~rLs-iD------~~RrVRe~ah~~~~~l~----~~~gK 81 (1843)
|+-.+..|++-|.+++..+. .++ +..++ +.+. ++|..+. .| .+-.+++..-+++..+. ....|
T Consensus 260 ~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~ 339 (1204)
T 3a6p_A 260 EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGA 339 (1204)
T ss_dssp CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788999999999997542 222 22222 2332 5677643 12 23334443333333333 22222
Q ss_pred ----hhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChh-hHHHHHHHHHHHHHHHHHHHh
Q 043255 82 ----DLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQE-KRLDALLICATEVFIYLEENL 142 (1843)
Q Consensus 82 ----~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~e-Kr~~a~~~cq~eIl~~~~d~L 142 (1843)
...+++..+++.-+.-+.+++..|+..+.+-|...+.... .+.+.+.-....+++.+...+
T Consensus 340 ~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l 405 (1204)
T 3a6p_A 340 DSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNL 405 (1204)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 3557888899998877778899999999998886654421 112334444455555554434
No 217
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=31.34 E-value=1.3e+02 Score=41.46 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=115.1
Q ss_pred hhhhHHHHHHh------hhcCCCHHHHHHHHHHH--HHHHHHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhh
Q 043255 45 IIPQWAFEYKR------LLLDYSREVRRATHEMM--TSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAA 116 (1843)
Q Consensus 45 iLp~W~~lY~r------LsiD~~RrVRe~ah~~~--~~l~~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~ 116 (1843)
.+..|-.+-.+ +..|++ .++++++-+- ..+.+.+|..+.|++..+.+ .+..-|+-++..-.++...-
T Consensus 663 ~~~~w~~l~~~~~~~~~~~~d~~-~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~----~~l~~y~~~s~~i~~~v~~~ 737 (1073)
T 3gjx_A 663 PNQVWDSIIQQATKNVDILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGRIYL----DMLNVYKCLSENISAAIQAN 737 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHH-HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCchhccChH-HHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhC
Confidence 34567666543 222554 4788777644 34566777777777766644 45555666666555555421
Q ss_pred CCChhhHH--HHHHHHHHHHHHHHHHHhccCc--cccCCCCCCh--hhHHHHHHHHH-----HHHHHHHHHHHHHhhhcc
Q 043255 117 FPAQEKRL--DALLICATEVFIYLEENLKLTP--QNLSDKAIAL--DELEEMHQQVI-----SSSLLALATLLDVLVCEH 185 (1843)
Q Consensus 117 Fp~~eKr~--~a~~~cq~eIl~~~~d~Lk~Tp--~TLSDks~~~--EE~EaKY~RVv-----ssSL~aL~~LL~~l~~~~ 185 (1843)
=+...|+. ..+.-++.||+..+...+..++ +..+..-++| |-.-.-|.|-+ +..|.+++.+++++..
T Consensus 738 g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~-- 815 (1073)
T 3gjx_A 738 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG-- 815 (1073)
T ss_dssp CGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG--
T ss_pred CchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHh--
Confidence 11112322 3356778999999988874332 1111111111 22233466632 5567788888887721
Q ss_pred cCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhc---cCChhHHHHHHHHHHHHHhcCCccc-c--cchhhH
Q 043255 186 FGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLK---SQSVSIRSATYSVLKSYIKNIPHVF-N--EGNLKI 259 (1843)
Q Consensus 186 ~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k---~~~p~VR~A~y~LL~tll~~~p~~l-~--~~~~k~ 259 (1843)
.+. +. ....++.+|... -..++ .+-|-.|-.+|.|++++.++.+..+ . +...+.
T Consensus 816 -------~~~--~~--------~~~il~~vf~~T---l~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~ 875 (1073)
T 3gjx_A 816 -------HIT--AE--------IPQIFDAVFECT---LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL 875 (1073)
T ss_dssp -------GTG--GG--------HHHHHHHHHHHH---HHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH
T ss_pred -------hcc--hh--------HHHHHHHHHHHH---HHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH
Confidence 000 00 111344444321 12232 5689999999999999999987643 2 223344
Q ss_pred HHHHHHcccCCCCCcchHHHHHHHHHHH
Q 043255 260 IATAILGAFQEKDPVCHSSMWDAILLLS 287 (1843)
Q Consensus 260 i~~avl~~l~e~d~~~~~~lWealL~l~ 287 (1843)
+-.+++-+++-+.+.+...-...++.+.
T Consensus 876 ~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 876 VLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 5555555555444444444333333333
No 218
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.30 E-value=9 Score=43.35 Aligned_cols=47 Identities=30% Similarity=0.653 Sum_probs=27.6
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhc--CC-CCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SH-KSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~-~stCPlCR~~ 1842 (1843)
.|.+|...=.. ..+ +.|..|...||..|+..=+.. .+ .=.||.|+..
T Consensus 176 ~C~vC~~~~~~--~~l--L~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDP--DKQ--LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC----CC--EECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCC--CCe--EEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 57777653221 223 689999999999999743332 12 2369999864
No 219
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=31.26 E-value=8.6 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=30.1
Q ss_pred ccccccccccccCccccccccc-ccCCccCHhhHHHHHh--cCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACK-TCKHKFHSACLYKWFS--TSHKSSCPLCQ 1840 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~-~C~h~FH~~CL~kWf~--~s~~stCPlCR 1840 (1843)
.|.||...... +.. -..|. .|..-||..|+.-=-. ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~-~~~--mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-KVD--WVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-TCC--EEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-CCc--EEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57888877642 222 26899 8999999999752111 01356899986
No 220
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=31.16 E-value=6e+02 Score=30.50 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=52.1
Q ss_pred ChhhHHHHHHHHHHHHhccCcC-cc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh---chhhhhhhhhhhh
Q 043255 19 DPITKLKALSSLSALLKEKSGK-DI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITV---GRDLAPHLKSLMG 92 (1843)
Q Consensus 19 D~tTK~KALqeL~~lv~~~~~~-~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~---gK~lap~Lk~l~g 92 (1843)
|+-++..|...|..+....+.. .+ .+.+|.-.+ +.-+++..||..+-.++..+...- ++.+.. ...++
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~ 146 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK----MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQ 146 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH--HTHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHH----HHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH--cCCHH
Confidence 6777778887777765432110 11 234444333 344678999999999999998652 122210 12233
Q ss_pred hHhhcccCCcHHHHHHHHHHHHh
Q 043255 93 PWWFSQFDSNSEVSQAAKRSLQA 115 (1843)
Q Consensus 93 ~Wl~~~~D~~~~VA~aA~~sf~~ 115 (1843)
+-+.-..+++..+...|..++..
T Consensus 147 ~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 147 KMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 33333345677777777666653
No 221
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.79 E-value=1.7e+02 Score=33.54 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHhhhc-CChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 8 VAQHLKRLAR-KDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 8 v~v~lKkL~K-KD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
++..+..... -| -.|+..|...++++-.++++-+..+++ .+.+ +..|++..||...-...+...+ .-.-+
T Consensus 17 v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~---~il~-~~~~~~~~vrk~~~~Fi~e~~~----~k~~l 87 (257)
T 3gs3_A 17 VVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLE---SVLS-LAHDSNMEVRKQVVAFVEQVCK----VKVEL 87 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHH---HHHG-GGGCSCHHHHHHHHHHHHHHHH----HCGGG
T ss_pred HHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHH---HHHH-hccCChHHHHHHHHHHHHHHHH----HHHHH
Confidence 3444554444 34 488889999988776655443333332 2222 6779999999988777766652 22347
Q ss_pred hhhhhhhHhhcccCCcHHHHHHHHHHHHhhCC
Q 043255 87 LKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFP 118 (1843)
Q Consensus 87 Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp 118 (1843)
++++++.-..-.-|.|..|.+.|-.++..+||
T Consensus 88 ~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 88 LPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 77777776566679999999999999998887
No 222
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=30.28 E-value=6.8e+02 Score=28.82 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhh-cCChhhHHHHHHHHHHHHhccCcCc----ccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHH---
Q 043255 5 DSEVAQHLKRLA-RKDPITKLKALSSLSALLKEKSGKD----IAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLV--- 76 (1843)
Q Consensus 5 D~ev~v~lKkL~-KKD~tTK~KALqeL~~lv~~~~~~~----l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~--- 76 (1843)
+.+....+..|. -||+++|.+||+-|.++++..+... ++.+||.... +.-+.+.||=--|..++..|+
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~----llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFIN----ALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----TCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH----HHhccchhHHHHHHHHHHHHHcCC
Q ss_pred ---HHhchhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHhccCccccCCCC
Q 043255 77 ---ITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKA 153 (1843)
Q Consensus 77 ---~~~gK~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eIl~~~~d~Lk~Tp~TLSDks 153 (1843)
...-.+++.-|+.++- +++....--|-+.+...=++.-=+ .+.+++..-+ .+++
T Consensus 107 pL~~~~y~Kl~~aL~dlik-------~~~~il~~eaae~Lgklkv~~~~~---------~V~~~l~sLl-~Skd------ 163 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLLE-------SPDDMMRIETIDVLSKLQPLEDSK---------LVRTYINELV-VSPD------ 163 (265)
T ss_dssp CBCHHHHHHHHHHHHHHTT-------SCCHHHHHHHHHHHHHCCBSCCCH---------HHHHHHHHHH-TCSS------
T ss_pred CCCHHHHHHHHHHHHHHhc-------CCCchHHHHHHHHhCcCCcccchH---------HHHHHHHHHH-hCCC------
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHhhhccchhHHhhhccCChhH
Q 043255 154 IALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQSVSI 233 (1843)
Q Consensus 154 ~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~lf~~~k~fW~~~k~~~p~V 233 (1843)
-|+-+.+|.++..+.... ++-. ..+.+|.+ .-.+++|+||.+
T Consensus 164 ----------~~vK~agl~~L~eia~~S--------~D~~-----------------i~~~I~~e---I~elL~~eD~~l 205 (265)
T 3b2a_A 164 ----------LYTKVAGFCLFLNMLNSS--------ADSG-----------------HLTLILDE---IPSLLQNDNEFI 205 (265)
T ss_dssp ----------HHHHHHHHHHHHHHGGGC--------SSCC-----------------CGGGTTTT---HHHHHTCSCHHH
T ss_pred ----------hhHHHHHHHHHHHhhccc--------CCHH-----------------HHHHHHHH---HHHHHcCCCHHH
Q ss_pred HHHHHHHHHHHHhc
Q 043255 234 RSATYSVLKSYIKN 247 (1843)
Q Consensus 234 R~A~y~LL~tll~~ 247 (1843)
+.-....+--++.+
T Consensus 206 ~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 206 VELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcC
No 223
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.00 E-value=10 Score=38.29 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=24.9
Q ss_pred ccccccccccccc---CcccccccccccCCccCHhhHHHH
Q 043255 1791 EECPICYSVIHTA---NHSLPRLACKTCKHKFHSACLYKW 1827 (1843)
Q Consensus 1791 eeCaICys~~~~~---d~~lP~~~C~~C~h~FH~~CL~kW 1827 (1843)
.-|.||...-... ...-+-+.|..|+..||..||...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 3699998754210 001123789999999999999754
No 224
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.92 E-value=32 Score=36.28 Aligned_cols=45 Identities=22% Similarity=0.686 Sum_probs=33.9
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHh---------cCCCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFS---------TSHKSSCPLCQS 1841 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~---------~s~~stCPlCR~ 1841 (1843)
.+.|.||-.- + .| .-|.+|-..||..||..=+. ..+.=.||+|+.
T Consensus 63 ~d~C~vC~~G---G--~L--lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG---G--NL--ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC---S--SE--EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC---C--cE--EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4579999863 2 23 57889999999999996553 345568999985
No 225
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=29.38 E-value=10 Score=35.30 Aligned_cols=33 Identities=36% Similarity=0.761 Sum_probs=24.1
Q ss_pred ccccccCCccCHhhHHHHHhc--CC-CCCCCCCCCC
Q 043255 1810 LACKTCKHKFHSACLYKWFST--SH-KSSCPLCQSP 1842 (1843)
Q Consensus 1810 ~~C~~C~h~FH~~CL~kWf~~--s~-~stCPlCR~~ 1842 (1843)
+.|..|...||..||..=+.. .+ .=.||.|+..
T Consensus 34 l~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 34 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp EECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred EEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 679999999999999732222 12 3479999864
No 226
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=26.96 E-value=52 Score=31.77 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=36.3
Q ss_pred ccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCC
Q 043255 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPL 1838 (1843)
Q Consensus 1786 ~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPl 1838 (1843)
.+.....|.+|-..... ...++..+|.=|+-..|..|..+. ...|++
T Consensus 34 Nl~~~s~C~vC~k~c~s-~~~L~g~rC~WCq~~VH~~C~~~~-----~~eC~l 80 (84)
T 1r79_A 34 NLPVSAKCTVCDKTCGS-VLRLQDWRCLWCKAMVHTSCKESL-----LTKCSG 80 (84)
T ss_dssp CCCTTCBCSSSCCBCCC-TTTCCCEEESSSCCEECHHHHHHC-----CSCBCC
T ss_pred CCCCCCEeCCCCCEeCC-ccCCCCCCCcccChhHHHHHHHhc-----cCcCCC
Confidence 34344689999988774 346788999999999999999875 346765
No 227
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.66 E-value=65 Score=38.72 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=58.9
Q ss_pred hHHhhhccCChhHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcCCCceeecCcc
Q 043255 221 YFLDFLKSQSVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRFPDCWTVLNAQ 300 (1843)
Q Consensus 221 ~fW~~~k~~~p~VR~A~y~LL~tll~~~p~~l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~Pd~W~~~n~k 300 (1843)
.+.+.+.|++|.||+++--....++...|+.+. .+...+-..+.+++|++..+-..++-.+.+. .
T Consensus 143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~----------d 207 (355)
T 3tjz_B 143 YMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN----------D 207 (355)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT----------C
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh----------c
Confidence 367778999999999999999999998888652 2445555778999999987766655555542 2
Q ss_pred hhhhHHHHHHHHcc
Q 043255 301 KTILNRFWHFLKNG 314 (1843)
Q Consensus 301 K~~lprL~~~Lr~G 314 (1843)
+..+.+|.+-+.+|
T Consensus 208 ~~a~~kLv~~l~~~ 221 (355)
T 3tjz_B 208 RLAVSKMISKFTRH 221 (355)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHhcC
Confidence 45777887777665
No 228
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.32 E-value=11 Score=35.88 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=30.0
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhc--CC-CCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SH-KSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~-~stCPlCR~ 1841 (1843)
.|.||...=. ...| +.|..|...||..||..=+.. .+ .=.||.|+.
T Consensus 28 ~C~vC~~~~~--~~~l--l~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE--PNMQ--LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC--STTE--EECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC--CCCE--EEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 5777775322 1223 679999999999999732222 12 337999975
No 229
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=26.07 E-value=1.1e+03 Score=29.71 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=57.1
Q ss_pred HHHhhhc-CChhhHHHHHHHHHHHHhccCcC-cc--cchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 043255 11 HLKRLAR-KDPITKLKALSSLSALLKEKSGK-DI--APIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPH 86 (1843)
Q Consensus 11 ~lKkL~K-KD~tTK~KALqeL~~lv~~~~~~-~l--~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~ 86 (1843)
..+.|.. .|+.++..|...|..+....+.. .+ .+.+|.-.. +.-+++..||+.+-.++..+...........
T Consensus 61 Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~----lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK----MLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHH----HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHH----HHhCCCHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 3444443 37788888888888766532111 11 234444333 4456789999999999999987532111111
Q ss_pred h-hhhhhhHhhcccCCcHHHHHHHHHHHHh
Q 043255 87 L-KSLMGPWWFSQFDSNSEVSQAAKRSLQA 115 (1843)
Q Consensus 87 L-k~l~g~Wl~~~~D~~~~VA~aA~~sf~~ 115 (1843)
. ...++.-+.-..+.+..+..+|..++..
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 1 1233333333445566666666666654
No 230
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=25.68 E-value=47 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCCCCcceEeecc
Q 043255 1722 TKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1722 ~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
....+.|.+|++||..++.|.+..
T Consensus 46 g~f~~~i~fp~~YP~~pP~v~f~t 69 (152)
T 2onu_A 46 GIWKVHVTLPDDYPFASPSIGFMN 69 (152)
T ss_dssp CEEEEEEECCTTTTTSCCEEEESS
T ss_pred eEEEEEEcCcccCCCCCCeEEEec
Confidence 357899999999999999998764
No 231
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=25.41 E-value=47 Score=35.02 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCCCCceEE-EEe-ccccEEEEEEEec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1685 IANELSQIKKANIADENFSL-TVS-KSANEVVATYTKD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1685 i~~el~~v~~~~~~~~~~~V-kv~-~~~~EV~a~Y~id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
+.+|+..+++. ....+.+ .+. .+-.+..++..-+ +....+.|.+|++||..++.|.+...
T Consensus 7 L~kEl~~l~~~--~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 7 LMKELEEIRKC--GMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp HHHHHTTCSSS--CCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHhC--CCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence 56677776542 1223332 211 2334555554322 23578999999999999999988654
No 232
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=25.38 E-value=47 Score=35.42 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEE-e-ccccEEEEEEEecC-----CceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTV-S-KSANEVVATYTKDE-----TKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv-~-~~~~EV~a~Y~ide-----~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+.+|+++++ ....+.+.. . .+-.+..++.--++ ....+.|.||++||..+++|.+...
T Consensus 10 RL~kEl~~l~----~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 10 RIQKDINELN----LPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp HHHHHHHTCC----CCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHhcC----CCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence 4566777662 234455552 2 23345555443222 3478999999999999999988654
No 233
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=25.28 E-value=28 Score=27.34 Aligned_cols=17 Identities=29% Similarity=0.854 Sum_probs=13.6
Q ss_pred CCcccccccccccccCc
Q 043255 1789 GVEECPICYSVIHTANH 1805 (1843)
Q Consensus 1789 g~eeCaICys~~~~~d~ 1805 (1843)
...||+.||++-.+++.
T Consensus 8 pfhecalcysitdpger 24 (36)
T 2jyp_A 8 PFHECALCYSITDPGER 24 (36)
T ss_dssp TTTCCSSSTTTTTTTCT
T ss_pred ccchheeEEeecCcchh
Confidence 45699999999887654
No 234
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=24.84 E-value=1e+02 Score=32.92 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCCceEEEEeccccE--EEEEEEec--CCceEEEEecCCCCCCCcceEeecccccc
Q 043255 1698 ADENFSLTVSKSANE--VVATYTKD--ETKMDLIIRLPASYPLRPVDVECMRSLGI 1749 (1843)
Q Consensus 1698 ~~~~~~Vkv~~~~~E--V~a~Y~id--e~~~el~I~lP~~YPL~~v~V~~~~~vgv 1749 (1843)
+.+=+.+..++.+-- =.+=|--+ .-.+++.|.+|.+||+.+++|......|.
T Consensus 57 d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 57 DSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred cCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 455577777765322 22223322 33578999999999999999988765443
No 235
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=24.80 E-value=1.8e+02 Score=33.69 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 043255 10 QHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHLKS 89 (1843)
Q Consensus 10 v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~Lk~ 89 (1843)
.++.-+.-|.+-||.-.|+++..+++..... -...++.- ..-.++.-|.|..||.+|-+++..+-..+|.++=+|+..
T Consensus 171 ~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~~l~~~-~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 171 MLLDALKSKNARQRSECLLVIEYYITNAGIS-PLKSLSVE-KTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-GGGGGCHH-HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-ccccccch-HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3455667789999999999999999876322 22233110 334567779999999999999999999999887766643
No 236
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.33 E-value=20 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.531 Sum_probs=33.1
Q ss_pred CcccccccccccccCcccccccccccCCccCHhhHHHHHhc------CCCCCCCCCC
Q 043255 1790 VEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST------SHKSSCPLCQ 1840 (1843)
Q Consensus 1790 ~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~------s~~stCPlCR 1840 (1843)
...|.||...-...+..| +.|..|...||..|+..=+.. .+.=.||.|+
T Consensus 16 ~~~C~vC~~~~~~~~~~l--l~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQL--VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp CCSCSSSCCCCCCTTCCE--EECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CCcCCCCCCCCCCCCCce--EECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 457999998643222333 789999999999999754321 2334687775
No 237
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=23.97 E-value=51 Score=35.54 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcc-CC-----CC---ceEEEE-e-ccccEEEEEEE-ec-----CCceEEEEecCCCCCCCcceEeecc
Q 043255 1684 LIANELSQIKKAN-IA-----DE---NFSLTV-S-KSANEVVATYT-KD-----ETKMDLIIRLPASYPLRPVDVECMR 1745 (1843)
Q Consensus 1684 li~~el~~v~~~~-~~-----~~---~~~Vkv-~-~~~~EV~a~Y~-id-----e~~~el~I~lP~~YPL~~v~V~~~~ 1745 (1843)
-|.+|++.+++.. .. .+ .+.+.. . .+-.+..+++. -+ +....+.|.||++||..+++|.+..
T Consensus 10 RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 88 (172)
T 2y9m_A 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQ 88 (172)
T ss_dssp HHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECT
T ss_pred HHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEee
Confidence 4567888887521 11 11 123322 2 23456666655 22 2357899999999999999998875
No 238
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.88 E-value=8.3 Score=37.05 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=30.5
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCP 1837 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCP 1837 (1843)
=||=|-..+... ...+.+.|+.|++.|...|-..|=+.+...+|.
T Consensus 27 wCP~C~~~~~~~-~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~ 71 (86)
T 2ct7_A 27 WCAQCSFGFIYE-REQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE 71 (86)
T ss_dssp CCSSSCCCEECC-CSCSCEECTTTCCEECSSSCSBCCTTTTTSCHH
T ss_pred ECcCCCchheec-CCCCceEeCCCCCccccccCCchhhcCCCCChH
Confidence 488887766533 334668899999999998888873333334553
No 239
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=23.74 E-value=52 Score=35.85 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCCCCceEEEE-e-ccccEEEEEEEec-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTV-S-KSANEVVATYTKD-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv-~-~~~~EV~a~Y~id-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+..|+.+++ ....+.+.. . .+-.+..++.--+ +....+.|.||++||..++.|.+...
T Consensus 30 RL~kEl~~l~----~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 30 RIQKDINELN----LPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp HHHHHHHTCC----CCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHhcC----CCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 3455666552 223455542 1 2234444444222 23478999999999999999988653
No 240
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=23.44 E-value=1.9e+02 Score=34.44 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=51.1
Q ss_pred cCChhHHHHHHHHHHHHHhcCCcc---cccchhhHHHHHHHcccCCCCCcchHHHHHHHHHHHhcC
Q 043255 228 SQSVSIRSATYSVLKSYIKNIPHV---FNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKRF 290 (1843)
Q Consensus 228 ~~~p~VR~A~y~LL~tll~~~p~~---l~~~~~k~i~~avl~~l~e~d~~~~~~lWealL~l~k~~ 290 (1843)
++-|-.|..+|.||+++..+.... +.++..+.+.-+++=+++-+++.++..=++.++.+.++.
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 578999999999999999986544 244556778888888888888888888888888887765
No 241
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.19 E-value=7.8e+02 Score=32.75 Aligned_cols=218 Identities=10% Similarity=0.067 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-----hhhhhhhhhhhhhHhhcccCCcHHHHHHHHHHHHhhCCChhhHHHHHHHHHHHH
Q 043255 60 YSREVRRATHEMMTSLVITVG-----RDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAAFPAQEKRLDALLICATEV 134 (1843)
Q Consensus 60 ~~RrVRe~ah~~~~~l~~~~g-----K~lap~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp~~eKr~~a~~~cq~eI 134 (1843)
....+|..+.-++..+....+ ..+......++-.|+......+. -.|-.++...||.+-.+ ....+.....
T Consensus 216 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~alt~i~~g~~~~-~~~~~~~~G~ 291 (810)
T 3now_A 216 ITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESK---VRVTVAITALLNGPLDV-GNQVVAREGI 291 (810)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHSSSHHH-HHHHHHTTTH
T ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhH---HHHHHHHHHHhcCCHHH-HHHHHhccch
Confidence 367888888888888886554 33444555666677766444333 44567788899986444 4455677777
Q ss_pred HHHHHHHhccCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccCcchhhhHHHHHhhhhHh
Q 043255 135 FIYLEENLKLTPQNLSDKAIALDELEEMHQQVISSSLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEK 214 (1843)
Q Consensus 135 l~~~~d~Lk~Tp~TLSDks~~~EE~EaKY~RVvssSL~aL~~LL~~l~~~~~~~~~~e~~~~e~~~~sk~~~~~i~~~e~ 214 (1843)
+..+...+. ++ ++... ..++.++..... + ...|...+..
T Consensus 292 v~~li~Ll~-s~----------~~~~q------~~A~~al~~aa~------------~---------~~~R~~I~~~--- 330 (810)
T 3now_A 292 LQMILAMAT-TD----------DELQQ------RVACECLIAASS------------K---------KDKAKALCEQ--- 330 (810)
T ss_dssp HHHHHHHHH-SS----------CHHHH------HHHHHHHHHHTT------------S---------HHHHHTTHHH---
T ss_pred HHHHHHHhC-CC----------CHHHH------HHHHHHHHHHcC------------C---------cHHHHHHHHc---
Confidence 777776662 11 11111 122333333110 0 0112222211
Q ss_pred hhccchhHHhhhccCChhHHHHHHHHHHHHHhc---CC--cccccchhhHHHHHHHcccCCC--CCcchHHHHHHHHHHH
Q 043255 215 LFSDHKYFLDFLKSQSVSIRSATYSVLKSYIKN---IP--HVFNEGNLKIIATAILGAFQEK--DPVCHSSMWDAILLLS 287 (1843)
Q Consensus 215 lf~~~k~fW~~~k~~~p~VR~A~y~LL~tll~~---~p--~~l~~~~~k~i~~avl~~l~e~--d~~~~~~lWealL~l~ 287 (1843)
. -..+..+++.+++.||.-.-..|..+-.. .| ..+....+..+.+.+.+.|... ++.+...--+++..++
T Consensus 331 --g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 331 --G-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp --H-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred --C-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 1 13466677778888877443333333211 11 2233344566778777776666 8888888888888888
Q ss_pred hcCCCceeecCcchhhhHHHHHHHHccCCCCCccchhhHHHH
Q 043255 288 KRFPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLF 329 (1843)
Q Consensus 288 k~~Pd~W~~~n~kK~~lprL~~~Lr~G~~Gsa~~~yp~Llpl 329 (1843)
...+..+..+ ....++|+|.++|+++ .....|+.+--|
T Consensus 408 ~~~~vk~~lv-~d~g~Ip~LV~LL~s~---d~~i~~~al~~L 445 (810)
T 3now_A 408 LDAECKEKLI-EDKASIHALMDLARGG---NQSCLYGVVTTF 445 (810)
T ss_dssp TSHHHHHHHH-HCHHHHHHHHHHHHTT---CGGGHHHHHHHH
T ss_pred CCcHHHHHHH-HccchHHHHHHHhCCC---ChHHHHHHHHHH
Confidence 7644444332 2467999999999863 455556555443
No 242
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.07 E-value=19 Score=38.40 Aligned_cols=26 Identities=35% Similarity=0.755 Sum_probs=16.8
Q ss_pred cccccccCCccCHhhHHHHHhcCCCCCCCCCCCC
Q 043255 1809 RLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSP 1842 (1843)
Q Consensus 1809 ~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~ 1842 (1843)
..+|..|||.|-.. . ....||.|.++
T Consensus 132 ~y~C~~Cg~~~~~~-------~-~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL-------P-PGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC-------C-GGGBCTTTCCB
T ss_pred EEECCCCCCcccCC-------C-CCCcCCCCCCc
Confidence 46788888888643 1 12478888764
No 243
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=22.99 E-value=1.5e+03 Score=30.36 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=49.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchhhh--------hhhhhhhhhHhhcccCCcHHHHHHHHHHHHhh---CCChhhHHH
Q 043255 58 LDYSREVRRATHEMMTSLVITVGRDLA--------PHLKSLMGPWWFSQFDSNSEVSQAAKRSLQAA---FPAQEKRLD 125 (1843)
Q Consensus 58 iD~~RrVRe~ah~~~~~l~~~~gK~la--------p~Lk~l~g~Wl~~~~D~~~~VA~aA~~sf~~~---Fp~~eKr~~ 125 (1843)
.|++++||..|..++..++..+++.+. ||++.++..-.....+.+..-.....+|+..+ -|..+++..
T Consensus 550 ~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~ 628 (1049)
T 3m1i_C 550 HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNR 628 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 477899999999999999999999886 99999998876555555554455566665533 443344444
No 244
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=22.64 E-value=56 Score=35.86 Aligned_cols=59 Identities=17% Similarity=0.429 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEE----e-cccc---EEEEEEEecC-----CceEEEEecCCCCCCCcceEeeccc
Q 043255 1684 LIANELSQIKKANIADENFSLTV----S-KSAN---EVVATYTKDE-----TKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1684 li~~el~~v~~~~~~~~~~~Vkv----~-~~~~---EV~a~Y~ide-----~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
-+..|+.+++ ....+.+.+ . .+-. +..++..-.+ ....+.|.||++||..++.|.+..+
T Consensus 33 RL~kEl~~l~----~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 33 RLKRDLDSLD----LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp HHHHHHHTCC----CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHhcc----CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 4667777766 234566652 1 2234 6666655332 3478999999999999999987543
No 245
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.80 E-value=3.3e+02 Score=33.11 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=70.8
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhccCcCcccchhhhHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043255 8 VAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSREVRRATHEMMTSLVITVGRDLAPHL 87 (1843)
Q Consensus 8 v~v~lKkL~KKD~tTK~KALqeL~~lv~~~~~~~l~~iLp~W~~lY~rLsiD~~RrVRe~ah~~~~~l~~~~gK~lap~L 87 (1843)
++..|+.....-.-.|+.-|...++++-.++++-+..+|+.-. -+..|.+-.||...-...+...++ -.-++
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il----~f~~d~~~~vRk~~a~FieEa~~~----~~el~ 98 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEII----AFQADKSIEVRKFVIGFIEEACKR----DIELL 98 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHH----GGGGCSCHHHHHHHHHHHHHHHHH----CGGGH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH----HhccCCcHHHHHHHHHHHHHHHHH----HHHHH
Confidence 4444554443122378889999998766666654555554332 466799999999988777666542 23346
Q ss_pred hhhhhhHhhcccCCcHHHHHHHHHHHHhhCC
Q 043255 88 KSLMGPWWFSQFDSNSEVSQAAKRSLQAAFP 118 (1843)
Q Consensus 88 k~l~g~Wl~~~~D~~~~VA~aA~~sf~~~Fp 118 (1843)
..+++.-..-..|.|..|.+.|-.++..+||
T Consensus 99 ~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 99 LKLIANLNMLLRDENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6677766666679999999999999998885
No 246
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.69 E-value=23 Score=35.58 Aligned_cols=47 Identities=21% Similarity=0.576 Sum_probs=31.1
Q ss_pred ccccccccccccCcccccccccccCCccCHhhHHHHHhc--CCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFST--SHKSSCPLCQS 1841 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~--s~~stCPlCR~ 1841 (1843)
.|.||...-. .+..+ +.|..|.+.||..|+..=+.. .+.=.||.||.
T Consensus 63 ~C~vC~~~~~-~~~~l--l~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGK-NADNM--LFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCC-TTCCC--EECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCC-Cccce--EEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777775321 11233 689999999999999644432 12348999986
No 247
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=21.42 E-value=2e+02 Score=34.29 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCC--CCceEEEEe-ccccEEEEEEEe-c-----CCceEEEEecCCCCCCCcceEeeccc
Q 043255 1685 IANELSQIKKANIA--DENFSLTVS-KSANEVVATYTK-D-----ETKMDLIIRLPASYPLRPVDVECMRS 1746 (1843)
Q Consensus 1685 i~~el~~v~~~~~~--~~~~~Vkv~-~~~~EV~a~Y~i-d-----e~~~el~I~lP~~YPL~~v~V~~~~~ 1746 (1843)
|..|+..+++.... ...+.|... .+-.+..++..- + ...+.+.|.||++||..++.|.+...
T Consensus 81 L~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 81 LAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp HHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred HHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 45677777642111 113344433 234555665542 2 23478999999999999999988654
No 248
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.55 E-value=28 Score=34.15 Aligned_cols=43 Identities=33% Similarity=0.777 Sum_probs=29.6
Q ss_pred ccccccccccccCcccccccccc--cC-CccCHhhHHHHHhcC--CCCCCCCCCCC
Q 043255 1792 ECPICYSVIHTANHSLPRLACKT--CK-HKFHSACLYKWFSTS--HKSSCPLCQSP 1842 (1843)
Q Consensus 1792 eCaICys~~~~~d~~lP~~~C~~--C~-h~FH~~CL~kWf~~s--~~stCPlCR~~ 1842 (1843)
-| ||-.... + .| +.|.. |. .-||..|+. +... ++-.||.|+..
T Consensus 38 yC-iC~~~~~-g--~M--I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 38 YC-LCHQVSY-G--EM--IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CS-TTCCBCC-S--CC--CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred EE-ECCCCCC-C--CE--eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 47 9987643 2 22 67888 76 789999997 3321 34579999863
No 249
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=20.15 E-value=16 Score=34.62 Aligned_cols=32 Identities=34% Similarity=0.752 Sum_probs=23.4
Q ss_pred ccccccCCccCHhhHHHHHhcC--CC-CCCCCCCC
Q 043255 1810 LACKTCKHKFHSACLYKWFSTS--HK-SSCPLCQS 1841 (1843)
Q Consensus 1810 ~~C~~C~h~FH~~CL~kWf~~s--~~-stCPlCR~ 1841 (1843)
+.|..|...||..|+..=+..- +. =.||.|++
T Consensus 42 l~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 42 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp EECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred eEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6799999999999997544321 22 37999986
Done!