BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043256
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 33/242 (13%)
Query: 11 SSKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL--HRDPSS---SI 65
+++ + +++ YP QGHINPL +K L +G +T V T + K L R P +
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 66 SIALETISDGYD--KGGSAQAESDQAYVDRFWQIGLQTLTELVERMND------VDCIVF 117
E+I DG +G ++ + L+ EL+ R+N V C+V
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 118 DSFLPWALDVAKKFGLTGAAFLTQS-CAVAAIYH---HVNKGLIKLPLIGDEVXXXXXXX 173
D + + + A++F L + + S C++ + H V +G+I DE
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPF---KDESYLTNGCL 181
Query: 174 XXX------------QDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKE 221
+D FI + + + ++K IL NTF ELE +
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFI-EVADRVNKDTTILLNTFNELESD 240
Query: 222 VI 223
VI
Sbjct: 241 VI 242
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 86/231 (37%), Gaps = 28/231 (12%)
Query: 12 SKLANCLVLSYPAQGHINPLLLFSKRL-ERKGIKVTIVTTYFISKS------LHRDPSSS 64
SK + ++ P GH+ PL+ F+KRL G+ VT V S L PSS
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSI 63
Query: 65 ISIALETISDGYDKGGSAQAESDQAY-VDRFWQIGLQTLTELVERMNDVDCIVFDSFLPW 123
S+ L + D D S + ES + V R + VE +V D F
Sbjct: 64 SSVFLPPV-DLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTD 122
Query: 124 ALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLIGDEVXXXXXXXXXXQDTPSFI 183
A DVA +F + F + V + + H LP + + V P +
Sbjct: 123 AFDVAVEFHVPPYIFYPTTANVLSFFLH-------LPKLDETVSCEFRELTEPLMLPGCV 175
Query: 184 NDSASYPAFFDMIVTRQ----------VSNIDKADWILCNTFYELEKEVIK 224
+ F D R+ +A+ IL NTF+ELE IK
Sbjct: 176 PVAGK--DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 26 GHINPLLLFSKRLERKGIKVTIVTTYFIS------------KSLHRDPSSSISIALETIS 73
GHINP + F L RK +++ Y I+ K+ + P + +++
Sbjct: 121 GHINPAVTFGLFLARK-VELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 74 DGYDKGGSAQAESDQAYV 91
GY+KG + AE +V
Sbjct: 180 LGYNKGTALGAEIIGTFV 197
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 26 GHINPLLLFSKRLERKGIKVTIVTTYFIS------------KSLHRDPSSSISIALETIS 73
GHINP + F L RK +++ Y I+ K+ + P + +++
Sbjct: 117 GHINPAVTFGLFLARK-VELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 74 DGYDKGGSAQAESDQAYV 91
GY+KG + AE +V
Sbjct: 176 LGYNKGTALGAEIIGTFV 193
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 73 SDGYDKGGSAQAESDQAYVDRFWQIG--LQTLTELVERMNDV 112
SD YD G+A + AYV F+Q G L L ++ R D
Sbjct: 76 SDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDT 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,032,983
Number of Sequences: 62578
Number of extensions: 213880
Number of successful extensions: 407
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 11
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)