Query 043256
Match_columns 224
No_of_seqs 235 out of 1486
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 2.9E-41 6.3E-46 300.2 22.5 215 7-224 1-231 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 2.2E-40 4.8E-45 292.4 21.9 204 13-224 4-211 (449)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.5E-39 5.4E-44 288.2 20.6 210 12-224 7-232 (477)
4 PLN02152 indole-3-acetate beta 100.0 2.6E-38 5.6E-43 279.7 20.9 203 14-224 3-214 (455)
5 PLN02562 UDP-glycosyltransfera 100.0 6.1E-38 1.3E-42 277.9 22.0 206 13-223 5-222 (448)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.8E-37 3.9E-42 274.6 21.9 204 13-224 6-221 (451)
7 PLN02670 transferase, transfer 100.0 1.3E-37 2.8E-42 276.2 19.7 206 13-224 5-231 (472)
8 PLN02992 coniferyl-alcohol glu 100.0 1.6E-37 3.6E-42 275.8 19.8 204 13-224 4-218 (481)
9 PLN00164 glucosyltransferase; 100.0 1.7E-37 3.6E-42 277.1 19.8 206 13-224 2-224 (480)
10 PLN02534 UDP-glycosyltransfera 100.0 2.4E-37 5.1E-42 275.7 20.7 206 13-224 7-233 (491)
11 PLN02210 UDP-glucosyl transfer 100.0 5.4E-37 1.2E-41 272.2 21.8 212 7-224 1-217 (456)
12 PLN03004 UDP-glycosyltransfera 100.0 2E-36 4.3E-41 267.4 20.7 207 14-224 3-226 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 3.7E-36 7.9E-41 266.1 21.1 207 14-224 3-222 (470)
14 PLN02764 glycosyltransferase f 100.0 1.4E-35 3E-40 261.6 20.0 200 13-224 4-217 (453)
15 PLN02448 UDP-glycosyltransfera 100.0 3.6E-35 7.8E-40 261.4 22.1 208 12-224 8-226 (459)
16 PLN02554 UDP-glycosyltransfera 100.0 4.2E-35 9E-40 262.2 21.1 203 14-223 2-227 (481)
17 PLN02208 glycosyltransferase f 100.0 5.5E-35 1.2E-39 258.2 20.4 197 12-224 2-211 (442)
18 PLN02207 UDP-glycosyltransfera 100.0 7.1E-35 1.5E-39 258.4 21.0 205 14-223 3-228 (468)
19 PLN02167 UDP-glycosyltransfera 100.0 6.8E-35 1.5E-39 260.4 19.9 206 13-224 2-233 (475)
20 PLN00414 glycosyltransferase f 100.0 1.7E-34 3.6E-39 255.4 18.6 193 13-224 3-210 (446)
21 PLN03007 UDP-glucosyltransfera 100.0 9E-33 1.9E-37 247.3 20.7 204 13-223 4-234 (482)
22 cd03784 GT1_Gtf_like This fami 99.6 3.1E-15 6.7E-20 131.1 8.9 124 15-143 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 3E-14 6.5E-19 124.8 10.9 117 20-141 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.4 4.3E-14 9.4E-19 127.2 0.2 139 14-154 5-158 (496)
25 PF03033 Glyco_transf_28: Glyc 99.2 1.3E-11 2.7E-16 92.6 3.4 120 17-142 1-131 (139)
26 PF00201 UDPGT: UDP-glucoronos 98.7 2E-09 4.3E-14 97.2 -1.8 120 16-140 2-148 (500)
27 PHA03392 egt ecdysteroid UDP-g 98.6 2.4E-07 5.2E-12 84.0 10.9 125 15-142 21-168 (507)
28 PF13528 Glyco_trans_1_3: Glyc 98.3 1E-05 2.3E-10 68.6 12.2 117 16-144 2-126 (318)
29 COG1819 Glycosyl transferases, 98.2 2E-06 4.3E-11 76.0 5.5 54 15-73 2-55 (406)
30 TIGR00661 MJ1255 conserved hyp 98.2 2.2E-05 4.7E-10 67.1 10.7 112 19-141 5-122 (321)
31 PRK12446 undecaprenyldiphospho 97.8 0.00036 7.7E-09 60.6 12.6 119 16-143 3-125 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.5 0.003 6.4E-08 55.0 13.5 119 17-142 3-124 (357)
33 cd03785 GT1_MurG MurG is an N- 97.3 0.0063 1.4E-07 52.0 12.4 116 16-138 1-118 (350)
34 TIGR01133 murG undecaprenyldip 96.9 0.023 5.1E-07 48.5 12.6 115 16-138 2-119 (348)
35 PRK00726 murG undecaprenyldiph 96.8 0.028 6.2E-07 48.3 12.6 116 15-138 2-120 (357)
36 cd03818 GT1_ExpC_like This fam 96.2 0.13 2.8E-06 45.0 12.8 101 30-139 12-116 (396)
37 TIGR00215 lpxB lipid-A-disacch 96.0 0.055 1.2E-06 47.6 9.6 111 15-138 6-119 (385)
38 TIGR03590 PseG pseudaminic aci 95.8 0.093 2E-06 44.0 9.5 93 23-138 12-109 (279)
39 cd03816 GT1_ALG1_like This fam 95.5 0.4 8.7E-06 42.4 12.8 119 15-138 4-127 (415)
40 cd03823 GT1_ExpE7_like This fa 95.4 0.39 8.4E-06 40.2 12.2 110 25-139 15-127 (359)
41 cd03800 GT1_Sucrose_synthase T 94.6 0.33 7.2E-06 41.8 9.8 106 26-138 22-130 (398)
42 PRK00025 lpxB lipid-A-disaccha 94.6 0.32 7E-06 42.1 9.6 113 15-140 2-117 (380)
43 COG4671 Predicted glycosyl tra 94.3 0.39 8.4E-06 41.5 8.9 102 13-123 8-118 (400)
44 PF13579 Glyco_trans_4_4: Glyc 94.0 0.11 2.4E-06 38.4 4.7 92 31-138 7-102 (160)
45 PRK10307 putative glycosyl tra 93.8 1.5 3.4E-05 38.4 12.5 22 31-52 21-42 (412)
46 cd03794 GT1_wbuB_like This fam 93.6 1.2 2.6E-05 37.4 11.1 110 25-140 14-132 (394)
47 cd04962 GT1_like_5 This family 93.5 1.4 2.9E-05 37.6 11.3 37 16-52 2-39 (371)
48 PLN00142 sucrose synthase 93.2 1.3 2.8E-05 42.7 11.4 103 33-138 319-437 (815)
49 PLN02871 UDP-sulfoquinovose:DA 93.1 0.98 2.1E-05 40.5 10.1 109 12-137 56-173 (465)
50 PF13477 Glyco_trans_4_2: Glyc 92.9 2.7 5.8E-05 30.6 11.3 100 16-137 1-104 (139)
51 TIGR02470 sucr_synth sucrose s 92.8 5.1 0.00011 38.7 14.6 122 15-139 256-416 (784)
52 cd03805 GT1_ALG2_like This fam 92.3 3.2 6.8E-05 35.8 12.0 36 16-51 2-39 (392)
53 TIGR03449 mycothiol_MshA UDP-N 92.3 3.2 6.8E-05 36.2 12.0 110 25-140 20-132 (405)
54 cd03808 GT1_cap1E_like This fa 91.5 5.5 0.00012 32.9 12.2 108 16-139 1-110 (359)
55 PF04007 DUF354: Protein of un 88.1 5 0.00011 34.7 9.4 105 26-145 11-116 (335)
56 cd03802 GT1_AviGT4_like This f 87.3 10 0.00022 31.5 10.9 27 26-52 20-46 (335)
57 cd03796 GT1_PIG-A_like This fa 86.7 13 0.00028 32.4 11.4 101 26-138 15-119 (398)
58 TIGR02472 sucr_P_syn_N sucrose 86.6 11 0.00024 33.5 11.1 105 28-139 29-144 (439)
59 PF12000 Glyco_trans_4_3: Gkyc 86.0 14 0.00031 28.7 10.9 92 40-140 1-96 (171)
60 TIGR02468 sucrsPsyn_pln sucros 85.9 15 0.00033 36.6 12.2 125 12-137 167-338 (1050)
61 cd03814 GT1_like_2 This family 85.5 1.5 3.2E-05 36.7 4.8 99 25-140 14-115 (364)
62 cd03801 GT1_YqgM_like This fam 84.4 15 0.00032 30.2 10.3 102 25-141 14-117 (374)
63 PF13439 Glyco_transf_4: Glyco 83.5 1.5 3.2E-05 32.7 3.5 99 26-143 13-112 (177)
64 cd03820 GT1_amsD_like This fam 83.2 15 0.00033 30.0 9.8 30 25-54 13-42 (348)
65 cd02067 B12-binding B12 bindin 82.9 2.4 5.1E-05 30.4 4.2 38 16-53 1-38 (119)
66 cd03819 GT1_WavL_like This fam 82.4 13 0.00029 31.1 9.4 101 21-140 5-109 (355)
67 PRK02261 methylaspartate mutas 82.2 3.3 7.1E-05 30.9 4.8 45 13-57 2-46 (137)
68 PRK13609 diacylglycerol glucos 80.9 2.6 5.7E-05 36.5 4.6 39 13-51 3-42 (380)
69 cd03817 GT1_UGDG_like This fam 80.9 2.8 6E-05 35.0 4.6 33 21-53 10-42 (374)
70 COG3980 spsG Spore coat polysa 80.7 1.8 4E-05 36.3 3.2 39 16-54 2-44 (318)
71 cd03798 GT1_wlbH_like This fam 77.8 27 0.00058 28.8 9.7 31 24-54 13-43 (377)
72 PRK05749 3-deoxy-D-manno-octul 77.7 20 0.00043 31.6 9.2 99 16-139 51-154 (425)
73 cd04951 GT1_WbdM_like This fam 77.3 3.2 6.8E-05 35.0 3.8 27 25-51 12-38 (360)
74 cd03806 GT1_ALG11_like This fa 74.6 61 0.0013 28.7 11.4 105 29-140 18-137 (419)
75 cd03821 GT1_Bme6_like This fam 72.8 6 0.00013 32.9 4.4 31 24-54 13-43 (375)
76 cd03825 GT1_wcfI_like This fam 70.7 7.5 0.00016 32.7 4.6 38 16-53 2-41 (365)
77 PF02310 B12-binding: B12 bind 70.2 13 0.00027 26.4 5.1 37 16-52 2-38 (121)
78 TIGR02370 pyl_corrinoid methyl 68.0 10 0.00023 30.0 4.5 45 13-57 83-127 (197)
79 cd02070 corrinoid_protein_B12- 67.8 10 0.00022 30.1 4.4 43 14-56 82-124 (201)
80 cd01635 Glycosyltransferase_GT 67.2 9.1 0.0002 29.4 4.1 26 24-49 12-37 (229)
81 PLN02275 transferase, transfer 66.5 85 0.0019 27.1 14.2 120 13-140 5-134 (371)
82 cd03811 GT1_WabH_like This fam 66.3 12 0.00025 30.7 4.8 31 24-54 11-41 (353)
83 cd03795 GT1_like_4 This family 64.5 11 0.00024 31.5 4.4 31 24-54 13-43 (357)
84 PF02441 Flavoprotein: Flavopr 63.5 19 0.00042 26.2 4.9 41 16-57 2-42 (129)
85 PLN02846 digalactosyldiacylgly 61.6 15 0.00033 33.2 4.8 40 13-52 3-47 (462)
86 TIGR03492 conserved hypothetic 61.5 70 0.0015 28.2 8.9 100 29-140 11-121 (396)
87 COG1484 DnaC DNA replication p 61.4 10 0.00022 31.4 3.4 45 15-59 106-150 (254)
88 cd02069 methionine_synthase_B1 61.0 19 0.00042 28.9 4.9 45 13-57 87-131 (213)
89 COG0299 PurN Folate-dependent 59.9 14 0.00031 29.3 3.8 32 111-142 29-60 (200)
90 COG1703 ArgK Putative periplas 59.8 20 0.00044 30.6 4.9 43 14-56 50-93 (323)
91 cd04955 GT1_like_6 This family 59.7 15 0.00031 31.0 4.2 45 26-73 16-60 (363)
92 cd02071 MM_CoA_mut_B12_BD meth 59.6 20 0.00044 25.8 4.4 41 16-56 1-41 (122)
93 PF06925 MGDG_synth: Monogalac 59.4 33 0.00071 26.1 5.8 48 93-141 72-125 (169)
94 PF04244 DPRP: Deoxyribodipyri 59.2 10 0.00023 30.8 3.1 27 26-52 46-72 (224)
95 PRK00654 glgA glycogen synthas 58.8 17 0.00037 32.6 4.7 32 20-51 11-43 (466)
96 PRK08305 spoVFB dipicolinate s 55.7 19 0.00041 28.6 3.9 38 16-54 7-45 (196)
97 cd03791 GT1_Glycogen_synthase_ 53.3 12 0.00026 33.4 2.8 23 29-51 20-42 (476)
98 PF04127 DFP: DNA / pantothena 53.2 16 0.00034 28.7 3.1 21 32-52 33-53 (185)
99 PF08323 Glyco_transf_5: Starc 52.8 13 0.00029 30.4 2.8 23 29-51 20-42 (245)
100 COG0162 TyrS Tyrosyl-tRNA synt 52.7 16 0.00035 32.4 3.4 26 26-52 49-74 (401)
101 PF09314 DUF1972: Domain of un 52.0 31 0.00068 27.1 4.6 45 26-73 17-62 (185)
102 PF12146 Hydrolase_4: Putative 50.5 40 0.00086 22.3 4.4 33 15-47 16-48 (79)
103 cd01018 ZntC Metal binding pro 50.1 67 0.0014 26.5 6.6 39 111-149 217-257 (266)
104 PLN02316 synthase/transferase 49.5 21 0.00046 35.6 4.0 41 13-53 586-632 (1036)
105 TIGR02853 spore_dpaA dipicolin 47.8 85 0.0018 26.4 6.9 20 32-51 14-33 (287)
106 PF00070 Pyr_redox: Pyridine n 47.3 31 0.00067 22.5 3.5 25 30-54 10-34 (80)
107 cd03786 GT1_UDP-GlcNAc_2-Epime 47.0 67 0.0014 27.2 6.4 38 101-139 79-119 (363)
108 cd03812 GT1_CapH_like This fam 45.9 25 0.00053 29.5 3.5 102 19-139 5-110 (358)
109 PF07894 DUF1669: Protein of u 45.8 36 0.00078 28.7 4.2 44 99-142 136-184 (284)
110 COG2185 Sbm Methylmalonyl-CoA 45.1 41 0.0009 25.3 4.1 38 13-50 11-48 (143)
111 PF06506 PrpR_N: Propionate ca 44.7 41 0.00089 25.9 4.3 42 100-144 112-155 (176)
112 PRK14089 ipid-A-disaccharide s 44.3 87 0.0019 27.2 6.6 35 110-144 75-114 (347)
113 cd01981 Pchlide_reductase_B Pc 44.2 41 0.00088 30.0 4.7 26 111-139 370-395 (430)
114 cd03799 GT1_amsK_like This is 44.0 42 0.00092 27.9 4.6 26 27-52 13-38 (355)
115 TIGR02095 glgA glycogen/starch 43.7 21 0.00046 32.0 2.8 24 29-52 21-44 (473)
116 cd00861 ProRS_anticodon_short 42.9 61 0.0013 21.5 4.5 36 15-50 2-39 (94)
117 PF13450 NAD_binding_8: NAD(P) 42.8 34 0.00075 21.8 3.0 20 32-51 9-28 (68)
118 cd01425 RPS2 Ribosomal protein 42.7 1.2E+02 0.0026 23.8 6.7 32 111-142 127-160 (193)
119 COG1817 Uncharacterized protei 42.6 2.3E+02 0.0049 24.6 9.4 105 26-145 11-117 (346)
120 TIGR00234 tyrS tyrosyl-tRNA sy 42.5 25 0.00053 31.0 2.9 25 26-51 47-71 (377)
121 TIGR02015 BchY chlorophyllide 42.4 1.1E+02 0.0024 27.3 7.1 94 15-138 286-379 (422)
122 COG2099 CobK Precorrin-6x redu 41.1 58 0.0013 27.0 4.7 81 31-140 14-101 (257)
123 PLN02605 monogalactosyldiacylg 39.7 1E+02 0.0022 26.7 6.5 33 18-50 3-38 (382)
124 TIGR03568 NeuC_NnaA UDP-N-acet 39.3 81 0.0018 27.4 5.7 107 24-140 9-125 (365)
125 PF00391 PEP-utilizers: PEP-ut 39.2 51 0.0011 21.8 3.5 29 111-139 30-60 (80)
126 PF00448 SRP54: SRP54-type pro 39.1 66 0.0014 25.4 4.7 38 17-54 4-41 (196)
127 COG0052 RpsB Ribosomal protein 38.8 65 0.0014 26.7 4.6 30 112-141 157-188 (252)
128 TIGR02113 coaC_strep phosphopa 38.7 53 0.0012 25.5 4.0 38 20-57 5-42 (177)
129 PF07355 GRDB: Glycine/sarcosi 38.2 96 0.0021 27.0 5.7 39 99-138 69-117 (349)
130 cd02034 CooC The accessory pro 38.1 81 0.0018 22.5 4.7 37 16-52 1-37 (116)
131 PF01975 SurE: Survival protei 37.9 38 0.00082 26.9 3.1 105 31-143 16-136 (196)
132 PF01555 N6_N4_Mtase: DNA meth 37.8 53 0.0011 25.7 4.0 42 101-142 180-223 (231)
133 TIGR00236 wecB UDP-N-acetylglu 37.8 97 0.0021 26.5 6.0 102 23-138 8-116 (365)
134 COG1618 Predicted nucleotide k 37.7 2E+02 0.0043 22.5 8.8 100 14-121 5-110 (179)
135 PF02951 GSH-S_N: Prokaryotic 37.4 95 0.0021 22.5 4.9 26 29-54 18-43 (119)
136 CHL00076 chlB photochlorophyll 37.4 58 0.0013 29.9 4.7 33 103-139 367-399 (513)
137 cd03807 GT1_WbnK_like This fam 37.1 61 0.0013 26.6 4.5 30 24-53 11-40 (365)
138 PF03720 UDPG_MGDP_dh_C: UDP-g 37.0 47 0.001 23.2 3.2 23 29-51 17-39 (106)
139 PRK09620 hypothetical protein; 37.0 39 0.00084 27.5 3.1 30 20-51 23-52 (229)
140 PF08026 Antimicrobial_5: Bee 36.8 5.1 0.00011 22.3 -1.4 23 20-42 16-38 (39)
141 cd03822 GT1_ecORF704_like This 36.8 61 0.0013 26.9 4.5 28 26-53 14-41 (366)
142 cd02065 B12-binding_like B12 b 36.5 76 0.0016 22.3 4.4 35 17-51 2-36 (125)
143 PRK06732 phosphopantothenate-- 36.4 41 0.00089 27.2 3.2 31 19-51 19-49 (229)
144 PRK09444 pntB pyridine nucleot 36.3 61 0.0013 29.3 4.4 41 15-58 307-352 (462)
145 PTZ00445 p36-lilke protein; Pr 36.0 44 0.00095 27.0 3.2 28 26-53 74-102 (219)
146 TIGR01278 DPOR_BchB light-inde 35.9 66 0.0014 29.5 4.8 25 111-138 364-388 (511)
147 COG0467 RAD55 RecA-superfamily 35.6 58 0.0012 26.7 4.0 44 14-57 23-66 (260)
148 COG4081 Uncharacterized protei 35.3 71 0.0015 23.7 3.9 38 17-54 6-44 (148)
149 PLN02331 phosphoribosylglycina 34.9 59 0.0013 26.0 3.8 30 111-140 28-57 (207)
150 PRK05920 aromatic acid decarbo 34.9 62 0.0013 25.9 3.9 39 16-55 5-43 (204)
151 PF03853 YjeF_N: YjeF-related 34.8 48 0.001 25.4 3.2 36 13-50 24-60 (169)
152 COG1255 Uncharacterized protei 34.7 44 0.00094 24.4 2.7 19 31-49 25-43 (129)
153 PRK12342 hypothetical protein; 34.3 81 0.0018 26.2 4.6 99 26-140 31-144 (254)
154 PRK02910 light-independent pro 34.3 76 0.0016 29.2 4.9 25 111-138 362-386 (519)
155 PRK08057 cobalt-precorrin-6x r 34.2 95 0.0021 25.6 5.0 33 15-52 3-35 (248)
156 PRK07313 phosphopantothenoylcy 34.2 66 0.0014 25.1 3.9 40 16-56 3-42 (182)
157 PRK01021 lpxB lipid-A-disaccha 34.2 1.2E+02 0.0026 28.6 6.1 34 111-144 310-348 (608)
158 cd00860 ThrRS_anticodon ThrRS 33.8 1E+02 0.0022 20.1 4.5 34 16-50 3-36 (91)
159 COG2910 Putative NADH-flavin r 33.8 43 0.00093 26.6 2.7 33 16-52 2-34 (211)
160 TIGR02852 spore_dpaB dipicolin 33.6 72 0.0016 25.1 4.1 31 23-53 8-39 (187)
161 cd03115 SRP The signal recogni 33.5 94 0.002 23.4 4.7 38 17-54 3-40 (173)
162 PRK13609 diacylglycerol glucos 33.4 1.2E+02 0.0027 26.0 6.0 40 100-140 94-135 (380)
163 PRK05986 cob(I)alamin adenolsy 33.3 78 0.0017 25.1 4.2 101 13-121 21-125 (191)
164 PF02233 PNTB: NAD(P) transhyd 33.2 73 0.0016 28.9 4.4 35 15-51 308-347 (463)
165 COG4088 Predicted nucleotide k 33.1 52 0.0011 26.8 3.1 113 16-154 3-122 (261)
166 PRK00771 signal recognition pa 32.9 97 0.0021 27.9 5.2 40 15-54 96-135 (437)
167 PRK03359 putative electron tra 32.6 91 0.002 25.9 4.7 100 26-141 32-148 (256)
168 PF01380 SIS: SIS domain SIS d 32.2 98 0.0021 21.8 4.4 32 23-54 61-92 (131)
169 PF08897 DUF1841: Domain of un 32.0 32 0.0007 25.7 1.7 18 23-40 57-74 (137)
170 PRK13608 diacylglycerol glucos 31.9 81 0.0018 27.5 4.6 34 15-48 6-43 (391)
171 PF02350 Epimerase_2: UDP-N-ac 31.9 94 0.002 26.9 4.9 42 99-141 56-100 (346)
172 TIGR03087 stp1 sugar transfera 31.4 42 0.00091 29.2 2.7 32 20-52 8-40 (397)
173 TIGR00064 ftsY signal recognit 31.1 1.2E+02 0.0026 25.3 5.2 38 16-53 74-111 (272)
174 TIGR02699 archaeo_AfpA archaeo 31.1 78 0.0017 24.7 3.8 34 21-54 5-40 (174)
175 PF02603 Hpr_kinase_N: HPr Ser 30.8 72 0.0016 23.2 3.4 40 100-140 72-113 (127)
176 TIGR00421 ubiX_pad polyprenyl 30.7 62 0.0013 25.3 3.2 27 31-57 15-41 (181)
177 PF09001 DUF1890: Domain of un 30.7 51 0.0011 24.6 2.5 30 29-58 14-43 (139)
178 TIGR02700 flavo_MJ0208 archaeo 30.2 83 0.0018 25.6 4.0 36 19-54 3-41 (234)
179 KOG2941 Beta-1,4-mannosyltrans 30.0 2E+02 0.0044 25.4 6.3 59 12-74 10-70 (444)
180 PRK13011 formyltetrahydrofolat 29.9 68 0.0015 27.1 3.6 38 100-139 101-144 (286)
181 cd00395 Tyr_Trp_RS_core cataly 29.9 53 0.0011 27.5 2.9 25 26-51 16-40 (273)
182 PRK14478 nitrogenase molybdenu 29.9 77 0.0017 28.8 4.1 24 111-137 393-416 (475)
183 cd03466 Nitrogenase_NifN_2 Nit 29.5 1.1E+02 0.0023 27.4 4.9 24 111-137 372-395 (429)
184 PF13460 NAD_binding_10: NADH( 29.4 61 0.0013 24.4 3.0 22 32-53 12-33 (183)
185 COG2085 Predicted dinucleotide 29.1 51 0.0011 26.6 2.5 23 32-54 14-36 (211)
186 PF02142 MGS: MGS-like domain 28.9 57 0.0012 22.3 2.5 83 31-136 2-94 (95)
187 PRK05562 precorrin-2 dehydroge 28.4 1.2E+02 0.0026 24.6 4.6 36 13-53 24-59 (223)
188 TIGR00347 bioD dethiobiotin sy 28.4 1.3E+02 0.0029 22.4 4.7 26 23-48 7-32 (166)
189 cd02067 B12-binding B12 bindin 28.4 1.1E+02 0.0023 21.6 3.9 39 13-51 49-88 (119)
190 KOG2585 Uncharacterized conser 28.3 1.2E+02 0.0027 27.2 4.9 36 13-51 265-302 (453)
191 COG0300 DltE Short-chain dehyd 28.3 63 0.0014 27.0 3.0 20 32-51 20-39 (265)
192 KOG2144 Tyrosyl-tRNA synthetas 28.2 63 0.0014 27.5 3.0 24 28-52 52-75 (360)
193 PF04493 Endonuclease_5: Endon 28.2 76 0.0016 25.4 3.4 39 100-138 77-123 (206)
194 cd00805 TyrRS_core catalytic c 28.1 71 0.0015 26.6 3.3 27 26-53 17-43 (269)
195 TIGR01425 SRP54_euk signal rec 28.0 1.2E+02 0.0026 27.3 4.9 39 16-54 102-140 (429)
196 PF00919 UPF0004: Uncharacteri 27.9 37 0.00081 23.6 1.4 16 204-219 34-49 (98)
197 PF05728 UPF0227: Uncharacteri 27.8 1.2E+02 0.0025 23.9 4.3 46 101-146 48-95 (187)
198 TIGR01675 plant-AP plant acid 27.8 74 0.0016 26.0 3.3 27 28-54 122-148 (229)
199 PF02780 Transketolase_C: Tran 27.7 1.4E+02 0.003 21.2 4.5 37 14-52 9-45 (124)
200 PLN02939 transferase, transfer 27.7 1.4E+02 0.003 29.9 5.5 41 12-52 479-525 (977)
201 TIGR03264 met_CoM_red_C methyl 27.5 86 0.0019 24.6 3.4 34 16-49 35-69 (194)
202 PLN02828 formyltetrahydrofolat 27.3 1.1E+02 0.0023 25.7 4.2 41 100-140 82-131 (268)
203 PF01695 IstB_IS21: IstB-like 27.3 92 0.002 24.1 3.7 45 14-58 47-91 (178)
204 TIGR00640 acid_CoA_mut_C methy 27.3 92 0.002 22.9 3.5 39 12-50 51-90 (132)
205 PF00289 CPSase_L_chain: Carba 27.3 59 0.0013 23.1 2.4 29 20-50 77-105 (110)
206 TIGR03088 stp2 sugar transfera 27.2 95 0.0021 26.4 4.1 103 15-137 2-108 (374)
207 PF12695 Abhydrolase_5: Alpha/ 27.0 1.7E+02 0.0037 20.6 5.0 25 24-48 8-32 (145)
208 TIGR01285 nifN nitrogenase mol 26.9 1.1E+02 0.0024 27.4 4.6 20 29-48 181-200 (432)
209 PRK13354 tyrosyl-tRNA syntheta 26.9 75 0.0016 28.3 3.5 34 19-53 40-76 (410)
210 PF01316 Arg_repressor: Argini 26.7 35 0.00077 22.3 1.0 21 31-51 22-42 (70)
211 cd01983 Fer4_NifH The Fer4_Nif 26.5 1.7E+02 0.0037 18.7 4.6 33 17-49 2-34 (99)
212 PRK13604 luxD acyl transferase 26.5 1.6E+02 0.0035 25.1 5.3 33 16-48 38-70 (307)
213 PLN02695 GDP-D-mannose-3',5'-e 26.3 1.4E+02 0.003 25.9 5.0 34 13-50 20-53 (370)
214 TIGR02193 heptsyl_trn_I lipopo 26.2 98 0.0021 26.0 4.0 43 16-58 1-45 (319)
215 PF01497 Peripla_BP_2: Peripla 26.1 1E+02 0.0022 24.3 3.9 40 101-142 52-93 (238)
216 PF02558 ApbA: Ketopantoate re 26.0 73 0.0016 23.3 2.8 20 33-52 12-31 (151)
217 TIGR01917 gly_red_sel_B glycin 25.9 1.9E+02 0.0041 26.0 5.6 39 100-139 66-114 (431)
218 TIGR01918 various_sel_PB selen 25.8 1.9E+02 0.0042 25.9 5.7 39 100-139 66-114 (431)
219 PF01210 NAD_Gly3P_dh_N: NAD-d 25.8 66 0.0014 24.2 2.6 20 33-52 13-32 (157)
220 PRK13982 bifunctional SbtC-lik 25.8 68 0.0015 29.3 3.0 38 15-52 257-306 (475)
221 PRK08277 D-mannonate oxidoredu 25.6 1.6E+02 0.0035 23.9 5.1 42 6-50 1-42 (278)
222 PLN00141 Tic62-NAD(P)-related 25.5 1.9E+02 0.0041 23.2 5.4 33 14-50 17-49 (251)
223 cd01452 VWA_26S_proteasome_sub 25.4 2.2E+02 0.0048 22.4 5.5 35 17-51 111-145 (187)
224 cd01141 TroA_d Periplasmic bin 25.4 1.3E+02 0.0029 22.8 4.3 38 100-139 60-99 (186)
225 cd01147 HemV-2 Metal binding p 25.0 1.3E+02 0.0028 24.2 4.3 40 100-141 65-107 (262)
226 PRK08558 adenine phosphoribosy 25.0 1.5E+02 0.0033 24.2 4.7 28 111-138 111-140 (238)
227 cd01965 Nitrogenase_MoFe_beta_ 24.9 1.3E+02 0.0029 26.7 4.7 25 111-138 371-395 (428)
228 PF10657 RC-P840_PscD: Photosy 24.9 1.1E+02 0.0025 22.3 3.4 41 14-54 46-86 (144)
229 TIGR02114 coaB_strep phosphopa 24.8 76 0.0016 25.7 2.9 18 32-49 29-46 (227)
230 PF03767 Acid_phosphat_B: HAD 24.7 67 0.0015 26.0 2.6 25 30-54 119-143 (229)
231 PLN02211 methyl indole-3-aceta 24.6 1.8E+02 0.0039 23.9 5.2 40 13-53 17-56 (273)
232 COG0332 FabH 3-oxoacyl-[acyl-c 24.6 2.3E+02 0.005 24.4 5.9 51 101-151 59-119 (323)
233 PF01297 TroA: Periplasmic sol 24.6 1.5E+02 0.0032 24.1 4.7 31 111-141 199-231 (256)
234 PRK10867 signal recognition pa 24.5 1.3E+02 0.0028 27.1 4.5 40 16-55 102-142 (433)
235 COG0313 Predicted methyltransf 24.3 3.1E+02 0.0067 23.1 6.4 48 103-151 71-125 (275)
236 COG3433 Aryl carrier domain [S 24.2 41 0.00088 22.2 0.9 22 29-50 32-53 (74)
237 TIGR00715 precor6x_red precorr 24.1 1.6E+02 0.0035 24.3 4.7 24 31-54 12-35 (256)
238 cd01976 Nitrogenase_MoFe_alpha 24.0 1.2E+02 0.0026 27.1 4.2 31 104-138 363-393 (421)
239 PF04413 Glycos_transf_N: 3-De 24.0 3.3E+02 0.0072 21.1 6.3 100 16-140 22-126 (186)
240 TIGR00176 mobB molybdopterin-g 23.9 1.6E+02 0.0036 22.1 4.5 35 17-51 2-36 (155)
241 PF02571 CbiJ: Precorrin-6x re 23.9 1.6E+02 0.0036 24.2 4.7 22 32-54 13-34 (249)
242 COG0569 TrkA K+ transport syst 23.9 72 0.0016 25.7 2.6 22 32-53 13-34 (225)
243 PRK14974 cell division protein 23.7 1.9E+02 0.0041 25.1 5.2 39 15-53 141-179 (336)
244 TIGR02329 propionate_PrpR prop 23.7 1.6E+02 0.0035 27.2 5.1 39 100-141 132-172 (526)
245 PF02684 LpxB: Lipid-A-disacch 23.5 2.8E+02 0.006 24.4 6.3 30 111-140 82-116 (373)
246 KOG1014 17 beta-hydroxysteroid 23.3 82 0.0018 27.0 2.8 19 32-50 63-81 (312)
247 PF07881 Fucose_iso_N1: L-fuco 23.3 2.7E+02 0.0059 21.6 5.4 67 67-140 6-84 (171)
248 PLN03050 pyridoxine (pyridoxam 23.1 88 0.0019 25.8 3.0 34 15-50 61-95 (246)
249 PRK14106 murD UDP-N-acetylmura 23.1 1.4E+02 0.003 26.5 4.5 31 16-51 7-37 (450)
250 TIGR01283 nifE nitrogenase mol 23.0 1.4E+02 0.0031 26.8 4.6 25 111-138 395-419 (456)
251 COG1090 Predicted nucleoside-d 23.0 86 0.0019 26.6 2.8 22 32-53 12-33 (297)
252 cd01017 AdcA Metal binding pro 22.9 1.9E+02 0.0042 24.0 5.1 29 111-139 220-250 (282)
253 PRK04148 hypothetical protein; 22.9 92 0.002 23.2 2.7 32 14-51 17-48 (134)
254 TIGR00745 apbA_panE 2-dehydrop 22.6 72 0.0016 26.3 2.4 25 33-57 5-29 (293)
255 KOG4589 Cell division protein 22.6 95 0.0021 24.8 2.9 21 103-123 126-148 (232)
256 PRK09361 radB DNA repair and r 22.6 1.9E+02 0.0042 22.8 4.9 35 17-51 26-60 (225)
257 PF05724 TPMT: Thiopurine S-me 22.5 89 0.0019 25.2 2.8 26 17-48 40-65 (218)
258 cd01974 Nitrogenase_MoFe_beta 22.4 1.8E+02 0.0038 26.0 5.0 18 31-48 176-193 (435)
259 PRK06719 precorrin-2 dehydroge 22.4 99 0.0021 23.4 3.0 31 15-50 14-44 (157)
260 cd05014 SIS_Kpsf KpsF-like pro 22.3 2.2E+02 0.0047 20.0 4.7 33 22-54 54-86 (128)
261 TIGR00288 conserved hypothetic 22.3 1.2E+02 0.0027 23.2 3.4 33 15-52 107-139 (160)
262 cd03809 GT1_mtfB_like This fam 22.2 81 0.0018 26.1 2.7 29 26-54 16-44 (365)
263 PF01738 DLH: Dienelactone hyd 22.1 2.2E+02 0.0047 22.2 5.1 33 14-47 14-46 (218)
264 cd00859 HisRS_anticodon HisRS 22.1 1.9E+02 0.004 18.5 4.1 34 16-50 3-36 (91)
265 COG3150 Predicted esterase [Ge 22.1 1.4E+02 0.0031 23.3 3.7 49 100-148 47-97 (191)
266 COG0503 Apt Adenine/guanine ph 22.0 3E+02 0.0064 21.3 5.6 28 111-138 53-82 (179)
267 PLN02778 3,5-epimerase/4-reduc 22.0 1.6E+02 0.0034 24.7 4.4 34 12-49 7-40 (298)
268 PLN00016 RNA-binding protein; 22.0 85 0.0018 27.2 2.9 36 15-52 53-90 (378)
269 PRK12404 stage V sporulation p 22.0 3.7E+02 0.0081 23.3 6.5 44 99-142 59-109 (334)
270 PRK08939 primosomal protein Dn 21.9 1.2E+02 0.0027 25.7 3.8 43 15-57 157-199 (306)
271 TIGR01862 N2-ase-Ialpha nitrog 21.9 1.2E+02 0.0026 27.3 3.8 24 111-137 387-410 (443)
272 cd02069 methionine_synthase_B1 21.9 1.4E+02 0.003 24.0 3.8 40 12-51 137-176 (213)
273 TIGR00679 hpr-ser Hpr(Ser) kin 21.8 3.4E+02 0.0073 23.3 6.2 43 101-144 74-118 (304)
274 KOG3062 RNA polymerase II elon 21.7 1.8E+02 0.0039 24.1 4.3 30 15-44 2-31 (281)
275 PRK11889 flhF flagellar biosyn 21.6 2.1E+02 0.0046 25.8 5.1 40 15-54 242-281 (436)
276 cd00806 TrpRS_core catalytic c 21.6 98 0.0021 25.9 3.0 27 26-52 15-41 (280)
277 PF10588 NADH-G_4Fe-4S_3: NADH 21.4 37 0.00081 19.5 0.3 35 101-136 4-39 (41)
278 cd00561 CobA_CobO_BtuR ATP:cor 21.3 3.8E+02 0.0082 20.4 10.1 98 16-121 4-105 (159)
279 TIGR00521 coaBC_dfp phosphopan 21.3 1.3E+02 0.0028 26.6 3.8 37 16-53 5-41 (390)
280 PF03205 MobB: Molybdopterin g 21.2 2.2E+02 0.0048 21.0 4.6 35 16-50 2-36 (140)
281 TIGR01680 Veg_Stor_Prot vegeta 21.1 1.2E+02 0.0027 25.4 3.5 28 27-54 146-173 (275)
282 PF03446 NAD_binding_2: NAD bi 21.0 1.1E+02 0.0024 23.0 3.0 19 32-50 14-32 (163)
283 PRK06222 ferredoxin-NADP(+) re 21.0 1.1E+02 0.0024 25.4 3.3 38 15-54 99-136 (281)
284 PF07015 VirC1: VirC1 protein; 20.8 1.5E+02 0.0033 24.2 3.9 35 23-57 11-45 (231)
285 TIGR00655 PurU formyltetrahydr 20.7 1.2E+02 0.0027 25.4 3.4 39 100-140 96-140 (280)
286 PRK09219 xanthine phosphoribos 20.6 2.5E+02 0.0055 22.0 5.0 30 111-140 50-81 (189)
287 TIGR01286 nifK nitrogenase mol 20.6 1.8E+02 0.0039 26.8 4.7 33 14-49 220-254 (515)
288 COG3046 Uncharacterized protei 20.6 1.2E+02 0.0026 27.2 3.3 26 27-52 51-76 (505)
289 PF08384 NPP: Pro-opiomelanoco 20.6 28 0.0006 20.7 -0.3 10 22-31 35-44 (45)
290 PRK10964 ADP-heptose:LPS hepto 20.5 1.5E+02 0.0033 24.9 4.1 43 16-58 2-46 (322)
291 PF13167 GTP-bdg_N: GTP-bindin 20.5 2.8E+02 0.0061 19.2 4.6 35 101-136 48-84 (95)
292 smart00851 MGS MGS-like domain 20.3 98 0.0021 20.7 2.3 79 31-136 2-89 (90)
293 PF10087 DUF2325: Uncharacteri 20.2 2.1E+02 0.0046 19.4 4.1 36 111-146 48-89 (97)
294 cd01968 Nitrogenase_NifE_I Nit 20.2 1.5E+02 0.0033 26.1 4.1 23 111-136 356-378 (410)
295 PF09334 tRNA-synt_1g: tRNA sy 20.1 1E+02 0.0023 27.2 3.0 29 26-54 17-48 (391)
296 PF03308 ArgK: ArgK protein; 20.1 2.8E+02 0.0061 23.2 5.3 42 14-55 28-70 (266)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.9e-41 Score=300.17 Aligned_cols=215 Identities=35% Similarity=0.602 Sum_probs=164.8
Q ss_pred cccCCCCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-C----C--CC--CCCeEEEEecCCCC
Q 043256 7 KASASSKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-D----P--SS--SISIALETISDGYD 77 (224)
Q Consensus 7 m~~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~----~--~~--~~~i~~~~l~~~~~ 77 (224)
|.++ +.++|||++|||+|||+|||++|||+|++||+.|||++|+.+..++.+ . . .. ...++|..+|+|+
T Consensus 1 ~~~~-~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdgl- 78 (480)
T PLN02555 1 MESE-SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGW- 78 (480)
T ss_pred CCCC-CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCC-
Confidence 5565 356899999999999999999999999999999999999987765431 0 0 11 1127777788888
Q ss_pred CCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhc---C-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhh
Q 043256 78 KGGSAQAESDQAYVDRFWQIGLQTLTELVERM---N-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVN 153 (224)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~ 153 (224)
|++.+...+...++..+...+.++++++++++ . +++|||+|+|++|+.+||+++|||+++|||++|+++++++++.
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 44443333444455555555678888888864 2 4599999999999999999999999999999999999999986
Q ss_pred hCCCCCCC---CCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 154 KGLIKLPL---IGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 154 ~~~~~~~~---~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.+.++.+. .+..+.+||+|+++.+|||.++...+..+..++.+. ++.++..+|+|||+|||+|||+++++
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAIL-GQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHH-HHHHhcccCCEEEEEchHHHhHHHHH
Confidence 65332221 123467999999999999987754333344556666 77778889999999999999999863
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.2e-40 Score=292.41 Aligned_cols=204 Identities=41% Similarity=0.720 Sum_probs=159.6
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVD 92 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (224)
+++|||++|||+|||++||++|||+|+++|++|||++|+.+.+++.....+ +|+++.+|+|+++.+.+..++...++.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~--~i~~~~ipdglp~~~~~~~~~~~~~~~ 81 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSS--PISIATISDGYDQGGFSSAGSVPEYLQ 81 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCC--CEEEEEcCCCCCCcccccccCHHHHHH
Confidence 457999999999999999999999999999999999999887665421112 499999999884323333344555666
Q ss_pred HHHHHhHHHHHHHHHhcC----CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCCCCCCCceeC
Q 043256 93 RFWQIGLQTLTELVERMN----DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLIGDEVLL 168 (224)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~----~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (224)
.+...+.+.++++++++. +++|||+|+|++|+.+||+++|||+++||+++++.++++++.... . ++..+.+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~---~--~~~~~~~ 156 (449)
T PLN02173 82 NFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYIN---N--GSLTLPI 156 (449)
T ss_pred HHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhc---c--CCccCCC
Confidence 666567789999988742 359999999999999999999999999999999988877654211 0 1123558
Q ss_pred CCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 169 PGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 169 Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
||+|+++.+|||.++...+..+..++.+. +..++..+|+|||+|||+|||+++++
T Consensus 157 pg~p~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 211 (449)
T PLN02173 157 KDLPLLELQDLPTFVTPTGSHLAYFEMVL-QQFTNFDKADFVLVNSFHDLDLHENE 211 (449)
T ss_pred CCCCCCChhhCChhhcCCCCchHHHHHHH-HHHhhhccCCEEEEeCHHHhhHHHHH
Confidence 99999999999987754333334555566 67778899999999999999998763
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-39 Score=288.25 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=155.3
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEec----CCCCCCCCCCcCC
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETIS----DGYDKGGSAQAES 86 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l~----~~~~~~~~~~~~~ 86 (224)
..++|||++|||+|||+|||++|||+|++||++|||++|+.+++++.+ ..... +|+++.+| +++ |+|.++.++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~-~i~~~~lp~P~~~~l-PdG~~~~~~ 84 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHP-SIETLVLPFPSHPSI-PSGVENVKD 84 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCC-CeeEEeCCCCCcCCC-CCCCcChhh
Confidence 457899999999999999999999999999999999999999877654 11111 48888765 255 555544333
Q ss_pred HH-H---HHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCC--
Q 043256 87 DQ-A---YVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKL-- 159 (224)
Q Consensus 87 ~~-~---~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~-- 159 (224)
+. . .+......+.+.+++++++.. +++|||+|+|++|+.+||+++|||+++|||++|+++++|+++..+....
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~ 164 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKIN 164 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccc
Confidence 21 1 122222235677778887753 6799999999999999999999999999999999999999986543211
Q ss_pred -CCCCCce---eCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 160 -PLIGDEV---LLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 160 -~~~~~~~---~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.+.++.+ .+||+|.++.+|+|.+++.....+...+.+. +..+...+++|||+|||+|||+++++
T Consensus 165 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 232 (477)
T PLN02863 165 PDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIK-DSFRANIASWGLVVNSFTELEGIYLE 232 (477)
T ss_pred ccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHH-HHHhhhccCCEEEEecHHHHHHHHHH
Confidence 1111222 4899999999999987753322233445555 55566778899999999999999874
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.6e-38 Score=279.66 Aligned_cols=203 Identities=29% Similarity=0.479 Sum_probs=153.2
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHh-CCCEEEEEecccc-ccccccCCCCCCCeEEEEecCCCCCCCCCC-cCCHHHH
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLER-KGIKVTIVTTYFI-SKSLHRDPSSSISIALETISDGYDKGGSAQ-AESDQAY 90 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~-~G~~VT~~~t~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~ 90 (224)
++||+++|||+|||+|||++|||+|++ +|+.|||++|+.+ ..++.+......+|+|+.+++|+ |++.+. .++....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dgl-p~g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGF-DDGVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCC-CCccccccccHHHH
Confidence 469999999999999999999999996 7999999999965 33222111111149999999888 554322 3344444
Q ss_pred HHHHHHHhHHHHHHHHHhcC----CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCCCCCCCce
Q 043256 91 VDRFWQIGLQTLTELVERMN----DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLIGDEV 166 (224)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~~~----~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 166 (224)
+..+...+.+.++++++++. +++|||+|++++|+.+||+++|||++.|||++|+++++++++..+. +..+
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~~ 155 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSVF 155 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCee
Confidence 44455557788888888741 5699999999999999999999999999999999999998876432 1245
Q ss_pred eCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhccc--CCCEEEEcChhhhhHhhhC
Q 043256 167 LLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNID--KADWILCNTFYELEKEVIK 224 (224)
Q Consensus 167 ~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~ilvNTf~eLE~~~l~ 224 (224)
.+||+|+++.+|||.++...+..+.+.+.+. +..+... +++|||+|||+|||+++++
T Consensus 156 ~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 214 (455)
T PLN02152 156 EFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQ-ELMEFLKEESNPKILVNTFDSLEPEFLT 214 (455)
T ss_pred ecCCCCCCchHHCchhhcCCCCchhHHHHHH-HHHHHhhhccCCEEEEeChHHhhHHHHH
Confidence 7999999999999997754333333445555 5555443 3679999999999999874
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.1e-38 Score=277.88 Aligned_cols=206 Identities=24% Similarity=0.450 Sum_probs=157.2
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccC-CCCCCCeEEEEecCCCCCCCCCCcCCHHHHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRD-PSSSISIALETISDGYDKGGSAQAESDQAYV 91 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (224)
.++|||++|||+|||+|||++|||+|++||++|||+||+.+.+++.+. .... +|+++.+|+++ +++.. .++..+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~-~i~~v~lp~g~-~~~~~--~~~~~l~ 80 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKL-GITFMSISDGQ-DDDPP--RDFFSIE 80 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCC-CEEEEECCCCC-CCCcc--ccHHHHH
Confidence 457999999999999999999999999999999999999887665431 1111 49999999876 33321 2333344
Q ss_pred HHHHHHhHHHHHHHHHhcC---CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh----CCCCCC---C
Q 043256 92 DRFWQIGLQTLTELVERMN---DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK----GLIKLP---L 161 (224)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~---~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~----~~~~~~---~ 161 (224)
..+...+.+.++++++++. +++|||+|+|++|+.++|+++|||+++||+++++.+++++++.. +.++.. .
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPR 160 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccc
Confidence 4444456788999998763 46899999999999999999999999999999999998887632 222211 1
Q ss_pred CCCce-eCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhh
Q 043256 162 IGDEV-LLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVI 223 (224)
Q Consensus 162 ~~~~~-~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l 223 (224)
..+.+ .+||+|+++.+|+|.++.........++.+. +..+...+++|||+|||+|||++++
T Consensus 161 ~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~ 222 (448)
T PLN02562 161 QLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWT-RTLERTKSLRWILMNSFKDEEYDDV 222 (448)
T ss_pred cccccccCCCCCCCChhhCcchhcCCCcchHHHHHHH-HHHhccccCCEEEEcChhhhCHHHH
Confidence 11223 6899999999999987654322233456666 7778888999999999999999865
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-37 Score=274.63 Aligned_cols=204 Identities=22% Similarity=0.323 Sum_probs=150.1
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVD 92 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (224)
+++|||++|||+|||+|||++|||+|++||++|||++|+.+..+... ... +|+++.+|+++++.+.+.. ....++.
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~-~~~--~i~~~~ip~glp~~~~~~~-~~~~~~~ 81 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD-DFT--DFQFVTIPESLPESDFKNL-GPIEFLH 81 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc-CCC--CeEEEeCCCCCCccccccc-CHHHHHH
Confidence 56799999999999999999999999999999999999987632111 112 4999999998843233322 2224444
Q ss_pred HHHHHhHHHHHHHHHhc----C-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh----CC-CCCCC-
Q 043256 93 RFWQIGLQTLTELVERM----N-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK----GL-IKLPL- 161 (224)
Q Consensus 93 ~~~~~~~~~l~~ll~~~----~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~----~~-~~~~~- 161 (224)
.+...+.+.++++++++ . +++|||+|+|++|+.++|+++|||+++||+++|+++++++++.. +. .+...
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEP 161 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccc
Confidence 45545667788887764 1 57999999999999999999999999999999999999887532 11 12111
Q ss_pred -CCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 162 -IGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 162 -~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
++....+||+|+++.+|+|...... .......+. .. ....+|+|||+|||+|||+++++
T Consensus 162 ~~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~-~~-~~~~~~~~vlvNTf~eLE~~~~~ 221 (451)
T PLN02410 162 KGQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYR-NT-VDKRTASSVIINTASCLESSSLS 221 (451)
T ss_pred ccCccccCCCCCCCChHHCcchhcCC--cHHHHHHHH-HH-hhcccCCEEEEeChHHhhHHHHH
Confidence 1223468999999999999754322 122333333 33 34678999999999999999874
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-37 Score=276.15 Aligned_cols=206 Identities=20% Similarity=0.293 Sum_probs=150.1
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-C-CCCCCCeEEEEec----CCCCCCCCCCcCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-D-PSSSISIALETIS----DGYDKGGSAQAES 86 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~-~~~~~~i~~~~l~----~~~~~~~~~~~~~ 86 (224)
.++|||++|||+|||++||++|||+|++||++|||++|+.+..++.+ . .... +|+++.+| +|+ |++.+..++
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~-~i~~~~lp~p~~dgl-p~~~~~~~~ 82 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSS-SITLVSFPLPSVPGL-PSSAESSTD 82 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCC-CeeEEECCCCccCCC-CCCcccccc
Confidence 45799999999999999999999999999999999999998866553 1 1112 49999997 577 444433333
Q ss_pred HH----HHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhh----hCCCC
Q 043256 87 DQ----AYVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVN----KGLIK 158 (224)
Q Consensus 87 ~~----~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~----~~~~~ 158 (224)
+. .++....+.+.+.+++++++. +++|||+|+|++|+.+||+++|||+++||++++++++++++.. .|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS-KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC-CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 32 233334445678889999887 7899999999999999999999999999999999999987552 23222
Q ss_pred CCCCCCce-eCCCCCC------CCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 159 LPLIGDEV-LLPGLPP------LDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 159 ~~~~~~~~-~~Pglp~------~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.. ++.+ .+||++| ++..|+|.++...+........+. +......+|+|||+|||+|||+++++
T Consensus 162 ~~--~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 162 ST--AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred Cc--cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 21 1122 3566422 566799987643222222233344 55566788999999999999999874
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-37 Score=275.82 Aligned_cols=204 Identities=21% Similarity=0.256 Sum_probs=152.3
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHH-hCCCEEEEEecccccccccc-CCCCCCCeEEEEecC----CCCCCCCCCcCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLE-RKGIKVTIVTTYFISKSLHR-DPSSSISIALETISD----GYDKGGSAQAES 86 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La-~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l~~----~~~~~~~~~~~~ 86 (224)
.++|||++|||+|||++||++|||+|+ +||++|||++|+.+..++.+ ..... +|+++.+|+ ++++++. +
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~-~i~~~~lp~p~~~glp~~~~----~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNST-GVDIVGLPSPDISGLVDPSA----H 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCC-CceEEECCCccccCCCCCCc----c
Confidence 458999999999999999999999998 79999999999988765532 11111 489999874 4422221 2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh--CCCCCC--C
Q 043256 87 DQAYVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK--GLIKLP--L 161 (224)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~--~~~~~~--~ 161 (224)
....+..+...+.+.++++++++. +++|||+|+|++|+.+||+++|||+++||+++|+++++++++.. ...... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTV 158 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccccc
Confidence 222222233345688899988754 78999999999999999999999999999999999998887643 111110 0
Q ss_pred CCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 162 IGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 162 ~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.++.+.+||+|+++..|+|..+...+ ...+..+. +..+...+|+|||+|||+|||+++++
T Consensus 159 ~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~l~ 218 (481)
T PLN02992 159 QRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFV-RHGLAYPKADGILVNTWEEMEPKSLK 218 (481)
T ss_pred CCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHH
Confidence 11245799999999999997554432 23455666 67778889999999999999998874
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=277.09 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=153.9
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCC----CEEEEEecccccc----cccc--C--CCCCCCeEEEEecCCCCCCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKG----IKVTIVTTYFISK----SLHR--D--PSSSISIALETISDGYDKGG 80 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G----~~VT~~~t~~~~~----~~~~--~--~~~~~~i~~~~l~~~~~~~~ 80 (224)
.++|||++|||+|||++||++|||+|++|| +.|||++|+.+.. ++.+ . ...+.+|+++++|++..|++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 357999999999999999999999999996 8999999986532 2221 0 01111399999997643444
Q ss_pred CCCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhC--CC
Q 043256 81 SAQAESDQAYVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKG--LI 157 (224)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~--~~ 157 (224)
.+ +...++..+...+.+.++++++++. +++|||+|+|++|+.+||+++|||++.|||++|+++++++++... ..
T Consensus 82 ~e---~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 158 (480)
T PLN00164 82 AA---GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEV 158 (480)
T ss_pred cc---cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccc
Confidence 32 2334444445557788999888764 579999999999999999999999999999999999999987532 11
Q ss_pred C--CCCCCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 158 K--LPLIGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 158 ~--~~~~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
+ .+..++.+.+||+|+++.+|||..+...+. ..++.+. ...++..+|+|||+|||+|||+++++
T Consensus 159 ~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 224 (480)
T PLN00164 159 AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFV-YHGRRFMEAAGIIVNTAAELEPGVLA 224 (480)
T ss_pred cCcccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHH-HHHHhhhhcCEEEEechHHhhHHHHH
Confidence 1 111113457999999999999987654321 2234455 56677889999999999999998863
No 10
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-37 Score=275.65 Aligned_cols=206 Identities=21% Similarity=0.358 Sum_probs=149.1
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-C---CCCCCCeEEEEec-----CCCCCCCCCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-D---PSSSISIALETIS-----DGYDKGGSAQ 83 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~---~~~~~~i~~~~l~-----~~~~~~~~~~ 83 (224)
++.||+++|||+|||+|||++|||+|++||+.|||++|+.+..++.+ . ...+..|+|+.+| +++ |++.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PIGCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CCCccc
Confidence 45799999999999999999999999999999999999988765543 1 1111138999997 577 455443
Q ss_pred cCCHH--HHHHHH---HHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh--C
Q 043256 84 AESDQ--AYVDRF---WQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK--G 155 (224)
Q Consensus 84 ~~~~~--~~~~~~---~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~--~ 155 (224)
..++. .+...+ ...+.+.+++++++.. +++|||+|+|++|+.+||+++|||+++|||++++++++++++.. +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 32221 223222 2235688888888643 78999999999999999999999999999999999988776532 2
Q ss_pred CCCCCCCCCceeCCCCCC---CCCCCCCCCcCCCCCchHHHHHHHHHHh-hcccCCCEEEEcChhhhhHhhhC
Q 043256 156 LIKLPLIGDEVLLPGLPP---LDPQDTPSFINDSASYPAFFDMIVTRQV-SNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 156 ~~~~~~~~~~~~~Pglp~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
......++..+.+||+|+ ++.+|||..+..... . +.+. ... +..++|+|||+|||+|||+++++
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~---~-~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD---L-DDVR-NKMREAESTAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChhhcCccc---H-HHHH-HHHHhhcccCCEEEEecHHHhhHHHHH
Confidence 112222234577999984 899999986533221 1 2222 233 33457889999999999998863
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.4e-37 Score=272.24 Aligned_cols=212 Identities=26% Similarity=0.460 Sum_probs=156.9
Q ss_pred cccCCCCCceEEEEeCCCccchHHHHHHHHH--HHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCc
Q 043256 7 KASASSKLANCLVLSYPAQGHINPLLLFSKR--LERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQA 84 (224)
Q Consensus 7 m~~~~~~~~hvl~~p~p~~GH~~P~l~La~~--La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 84 (224)
|++....+.|||++|||+|||+|||++|||+ |++||++|||++|+.+.+++.+.......+++..+|+++ |++.+
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~gl-p~~~~-- 77 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGL-PKDDP-- 77 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCC-CCCcc--
Confidence 3333345689999999999999999999999 558999999999998877664311111137888888888 44432
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh--CCCCCCCC
Q 043256 85 ESDQAYVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK--GLIKLPLI 162 (224)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~--~~~~~~~~ 162 (224)
.+...++..+...+.+.+++++++. ++||||+|.+++|+.++|+++|||+++||+++++++++++++.. +.++...+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 78 RAPETLLKSLNKVGAKNLSKIIEEK-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHhcC-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 2333455555555667888888877 79999999999999999999999999999999999999887643 22221111
Q ss_pred -CCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 163 -GDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 163 -~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
++.+.+||+|+++.+|+|..+.+... ..+...+. +..+...+++||++|||+|||+++++
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 217 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMA-EFADCLRYVKWVLVNSFYELESEIIE 217 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHH-HHHHhcccCCEEEEeCHHHHhHHHHH
Confidence 13357999999999999987654321 22222333 44456678999999999999999874
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2e-36 Score=267.41 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=148.5
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCC--CEEE--EEeccccccccc----c-CCCCCCCeEEEEecCCCCC-CCCCC
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKG--IKVT--IVTTYFISKSLH----R-DPSSSISIALETISDGYDK-GGSAQ 83 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~VT--~~~t~~~~~~~~----~-~~~~~~~i~~~~l~~~~~~-~~~~~ 83 (224)
+.|||++|||+|||+|||++|||+|++|| +.|| ++++..+...+. . ..... +|+|+.+|++.++ ++.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFP-SITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCC-CeEEEEcCCCCCCCCcccc
Confidence 35999999999999999999999999998 4455 455555433221 1 00111 4999999976532 22121
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCC--CC
Q 043256 84 AESDQAYVDRFWQIGLQTLTELVERMN---DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGL--IK 158 (224)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~--~~ 158 (224)
..+....+..+...+.+.++++++++. +++|||+|+|++|+.++|+++|||+++|||++|+++++++++.... .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 122222332333446678888888752 5699999999999999999999999999999999999999875321 11
Q ss_pred CC--CCCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 159 LP--LIGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 159 ~~--~~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.. .+...+.+||+|+++.+|||.++++.+ +..++.+. +..+...+|+|||+|||+|||+++++
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~~~~vl~NTf~eLE~~~l~ 226 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFI-MFGKQLSKSSGIIINTFDALENRAIK 226 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHH-HHHHhhcccCeeeeeeHHHhHHHHHH
Confidence 11 111346799999999999998775433 23455666 67777889999999999999998874
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.7e-36 Score=266.06 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=150.6
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhC-CCEEEEEeccccccccc--c--CCC-CCCCeEEEEecCCCCCCCC-CCcCC
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERK-GIKVTIVTTYFISKSLH--R--DPS-SSISIALETISDGYDKGGS-AQAES 86 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~-G~~VT~~~t~~~~~~~~--~--~~~-~~~~i~~~~l~~~~~~~~~-~~~~~ 86 (224)
++||+++|||+|||+|||++|||+|+++ |+.|||++|..+..++. . ... ...+|+++.+|++. .++. +...+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCCCcc
Confidence 5799999999999999999999999987 99999999887664431 1 001 11149999998532 2222 11012
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCc-eEEechhhHHHHHHHHHhhh--CCCCC--C
Q 043256 87 DQAYVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLT-GAAFLTQSCAVAAIYHHVNK--GLIKL--P 160 (224)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP-~v~f~t~~a~~~~~~~~~~~--~~~~~--~ 160 (224)
....+......+.+.++++++++. +++|||+|+|++|+.+||+++||| +++|++++++.++++++++. +.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~ 161 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYV 161 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccC
Confidence 222222233357789999998764 689999999999999999999999 69999999999988888742 21111 0
Q ss_pred CCCCceeCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 161 LIGDEVLLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 161 ~~~~~~~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
+.++.+.+||+|+++.+|+|..+.+.. ...+..+. +..++..+|+|||+|||+|||+++++
T Consensus 162 ~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~ 222 (470)
T PLN03015 162 DIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLA 222 (470)
T ss_pred CCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHH
Confidence 112346799999999999998665433 22234455 56667899999999999999998874
No 14
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-35 Score=261.56 Aligned_cols=200 Identities=23% Similarity=0.324 Sum_probs=144.8
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCC-CCCeEEEEec--CCCCCCCCCCcCCHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSS-SISIALETIS--DGYDKGGSAQAESDQ 88 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~-~~~i~~~~l~--~~~~~~~~~~~~~~~ 88 (224)
.++|||++|||+|||++||++|||+|++||++|||++|+.+..++.+ ...+ +..++++.+| +|+ |++.+.+.++.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~gl-p~g~e~~~~~~ 82 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGL-PVGTETVSEIP 82 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCC-CCcccccccCC
Confidence 56899999999999999999999999999999999999988765543 1111 1126777777 677 55544332222
Q ss_pred -H---HHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCCCCCCC
Q 043256 89 -A---YVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLIGD 164 (224)
Q Consensus 89 -~---~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~~~~~~ 164 (224)
. .+......+.+.+++++++. +++|||+|+ ++|+.++|+++|||++.||+++|+.++++++ ..+.+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~~-~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~------- 152 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRAV-EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL------- 152 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHhC-CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC-------
Confidence 1 12222234568899999887 789999995 8999999999999999999999999999864 21111
Q ss_pred ceeCCCCCC----CCCCCCCCCcC--CCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 165 EVLLPGLPP----LDPQDTPSFIN--DSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 165 ~~~~Pglp~----~~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
...+||+|. ++.+|+|.+.. .....+.+..++. +..+...+++|||+|||+|||+++++
T Consensus 153 ~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 153 GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLE-RVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHH-HHHHhhccCCEEEEeccHHhhHHHHH
Confidence 123489983 78888887422 1111122333444 55467788999999999999999874
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-35 Score=261.41 Aligned_cols=208 Identities=25% Similarity=0.441 Sum_probs=158.6
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhC--CCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHH
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERK--GIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQA 89 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 89 (224)
..++||+++|||++||++||++||++|++| |++|||++|+.+.+++.+..... +|+|+.+|+++ |++.+...+...
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~-gi~fv~lp~~~-p~~~~~~~~~~~ 85 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPD-NIRFATIPNVI-PSELVRAADFPG 85 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCC-CEEEEECCCCC-CCccccccCHHH
Confidence 457899999999999999999999999999 99999999998887765411112 49999999876 444322234444
Q ss_pred HHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhh----CCCCCCC---
Q 043256 90 YVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK----GLIKLPL--- 161 (224)
Q Consensus 90 ~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~----~~~~~~~--- 161 (224)
++..+...+.+.++++++++. ++||||+|++++|+.++|+++|||++.||+++++.+++++++.. +..+...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSES 165 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccc
Confidence 444444446778888888763 68999999999999999999999999999999999998887642 2211111
Q ss_pred CCCce-eCCCCCCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 162 IGDEV-LLPGLPPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 162 ~~~~~-~~Pglp~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.++.+ .+||+++++..|+|.++.+.+ ...++.+. +...+..++++||+|||+|||+++++
T Consensus 166 ~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 226 (459)
T PLN02448 166 GEERVDYIPGLSSTRLSDLPPIFHGNS--RRVLKRIL-EAFSWVPKAQYLLFTSFYELEAQAID 226 (459)
T ss_pred cCCccccCCCCCCCChHHCchhhcCCc--hHHHHHHH-HHHhhcccCCEEEEccHHHhhHHHHH
Confidence 11223 489999999999998765432 33455566 66777888999999999999998763
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.2e-35 Score=262.15 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=147.8
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCC--CEEEEEecccccccc-------cc-CCCCCCCeEEEEecCCCCCCCCCC
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKG--IKVTIVTTYFISKSL-------HR-DPSSSISIALETISDGYDKGGSAQ 83 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~VT~~~t~~~~~~~-------~~-~~~~~~~i~~~~l~~~~~~~~~~~ 83 (224)
|.|||++|||+|||++||++|||+|++|| ++|||++|+.+..++ .+ ......+|+++.+|++.+++. ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-ED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-cc
Confidence 57999999999999999999999999998 999999999876532 11 000111499999997653221 11
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhc---C--CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCC--
Q 043256 84 AESDQAYVDRFWQIGLQTLTELVERM---N--DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGL-- 156 (224)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~---~--~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~-- 156 (224)
..+...+..+...+.+.+++++++. . +++|||+|+|++|+.+||+++|||+++|||++|+++++++++....
T Consensus 81 -~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 81 -PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 1222233333334455556555431 1 3589999999999999999999999999999999999999885321
Q ss_pred --CCCC---CCCCceeCCCCC-CCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhh
Q 043256 157 --IKLP---LIGDEVLLPGLP-PLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVI 223 (224)
Q Consensus 157 --~~~~---~~~~~~~~Pglp-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l 223 (224)
.+.+ +.++.+.+||++ +++.+|+|..+.+. .+++.+. +..+...+|+|||+|||+|||++++
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~-~~~~~~~~~~gvlvNt~~eLe~~~~ 227 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFL-AQARRFREMKGILVNTVAELEPQAL 227 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHH-HHHHhcccCCEEEEechHHHhHHHH
Confidence 1111 111346799995 89999999876432 3455666 7777889999999999999999875
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.5e-35 Score=258.20 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=140.9
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEe--c--CCCCCCCCCCcCC
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETI--S--DGYDKGGSAQAES 86 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l--~--~~~~~~~~~~~~~ 86 (224)
+.++|||++|||++||++||++|||+|++||++|||+||+.+..++.+ ...+. ++++..+ | +++ |++.+..++
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~-~i~~~~l~~p~~dgL-p~g~~~~~~ 79 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPD-SIVFHPLTIPPVNGL-PAGAETTSD 79 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCC-ceEEEEeCCCCccCC-CCCcccccc
Confidence 356899999999999999999999999999999999999987776654 11112 3777765 3 466 455443333
Q ss_pred HHH----HHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCCCCC
Q 043256 87 DQA----YVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLI 162 (224)
Q Consensus 87 ~~~----~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~~~~ 162 (224)
+.. .+......+.+.++++++++ ++||||+| +++|+.++|+++|||+++||+++|++++ ++++..+...
T Consensus 80 l~~~l~~~~~~~~~~~~~~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~---- 152 (442)
T PLN02208 80 IPISMDNLLSEALDLTRDQVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLG---- 152 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccC----
Confidence 321 12222334567888888877 78999999 5899999999999999999999998765 5554432111
Q ss_pred CCceeCCCCCC----CCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 163 GDEVLLPGLPP----LDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 163 ~~~~~~Pglp~----~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
..+||+|. ++.+|+|.+ .. .+..++.+..+..+...+|+|||+|||+|||+++++
T Consensus 153 ---~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~ 211 (442)
T PLN02208 153 ---VPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCD 211 (442)
T ss_pred ---CCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHH
Confidence 23588884 578889964 11 122334443033356778999999999999999874
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7.1e-35 Score=258.40 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=145.4
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCC--CEEEEEecccccc-cccc--C--CCCCCCeEEEEecCCCCCCCCCCcCC
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKG--IKVTIVTTYFISK-SLHR--D--PSSSISIALETISDGYDKGGSAQAES 86 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~VT~~~t~~~~~-~~~~--~--~~~~~~i~~~~l~~~~~~~~~~~~~~ 86 (224)
++||+++|||+|||+|||++|||+|++|| +.|||++|+.+.. .+.. . .....+|+|+.+|++...+......+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 47999999999999999999999999998 9999999997752 2211 0 01101499999996431111011223
Q ss_pred HHHHHHHHHHHh----HHHHHHHHHhcC----CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCC-
Q 043256 87 DQAYVDRFWQIG----LQTLTELVERMN----DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLI- 157 (224)
Q Consensus 87 ~~~~~~~~~~~~----~~~l~~ll~~~~----~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~- 157 (224)
....+..+...+ ++.+++++++.. +++|||+|+|++|+.+||+++|||+++|||++|+++++++++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~ 162 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSK 162 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcccc
Confidence 332222222223 456677766531 45899999999999999999999999999999999999988743211
Q ss_pred ----CCCCCCCceeCCCC-CCCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhh
Q 043256 158 ----KLPLIGDEVLLPGL-PPLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVI 223 (224)
Q Consensus 158 ----~~~~~~~~~~~Pgl-p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l 223 (224)
..+..+..+.+||+ |+++.+|+|.++...+ . +..+. +..+..++++++|+|||+|||+.++
T Consensus 163 ~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~--~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 163 DTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--G--YDAYV-KLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred ccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--c--HHHHH-HHHHhcccCCEEEEEchHHHhHHHH
Confidence 11111234679999 6899999998774332 1 33444 5666788999999999999999865
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.8e-35 Score=260.43 Aligned_cols=206 Identities=22% Similarity=0.282 Sum_probs=140.9
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCC---EEEEEecccccc-----cccc-CCCCCCCeEEEEecCCCCCCCCCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGI---KVTIVTTYFISK-----SLHR-DPSSSISIALETISDGYDKGGSAQ 83 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~---~VT~~~t~~~~~-----~~~~-~~~~~~~i~~~~l~~~~~~~~~~~ 83 (224)
+++||+++|||+|||+|||++|||+|++||. .||+++|..+.. .+.+ ..... +|+|+.+|++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~-~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEP-RIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCC-CeEEEECCCCCCCccccc
Confidence 5689999999999999999999999999994 567776654322 1111 00111 499999986542222111
Q ss_pred -cCCHHHHHHHHHHHhHHHHHHHHHhc--------C-CCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhh
Q 043256 84 -AESDQAYVDRFWQIGLQTLTELVERM--------N-DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVN 153 (224)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~l~~ll~~~--------~-~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~ 153 (224)
.......+..+...+.+.++++++++ . +++|||+|+|++|+.+||+++|||+++|||++|+++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11111122222223444555555432 1 4599999999999999999999999999999999999998874
Q ss_pred hC--CCC----CCCCCCceeCCCCC-CCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 154 KG--LIK----LPLIGDEVLLPGLP-PLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 154 ~~--~~~----~~~~~~~~~~Pglp-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
.+ ... ....++.+.+||+| +++..|+|..+++.. .++.+. +..++..+|+|||+|||+|||+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWV-EIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHH-HHHHhhcccCEeeeccHHHHHHHHHH
Confidence 32 111 11112346799994 799999997664432 133455 66677889999999999999998863
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.7e-34 Score=255.43 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=137.0
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEe--c--CCCCCCCCCCcCCH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETI--S--DGYDKGGSAQAESD 87 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l--~--~~~~~~~~~~~~~~ 87 (224)
.++|||++|||+|||+|||++|||+|++||++|||++|+.+..++.+ ..... +|+|+.+ | +++ |++.+...++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~-~i~~~~i~lP~~dGL-P~g~e~~~~l 80 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPD-SIVFEPLTLPPVDGL-PFGAETASDL 80 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCC-ceEEEEecCCCcCCC-CCcccccccc
Confidence 45899999999999999999999999999999999999988766643 11111 3888655 3 566 4443333233
Q ss_pred HH----HHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHHHhhhCCCCCCCCC
Q 043256 88 QA----YVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYHHVNKGLIKLPLIG 163 (224)
Q Consensus 88 ~~----~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~~~~~~ 163 (224)
.. .+......+.+.++++++.. +++|||+|+ ++|+.+||+++|||++.||++++++++++++.... . +
T Consensus 81 ~~~~~~~~~~a~~~l~~~l~~~L~~~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~-----~ 152 (446)
T PLN00414 81 PNSTKKPIFDAMDLLRDQIEAKVRAL-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-L-----G 152 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-c-----C
Confidence 21 12122223556777777765 789999995 89999999999999999999999999998773211 0 1
Q ss_pred CceeCCCCCC----CCCCCC--CCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhhC
Q 043256 164 DEVLLPGLPP----LDPQDT--PSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVIK 224 (224)
Q Consensus 164 ~~~~~Pglp~----~~~~dl--p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l~ 224 (224)
..+||+|. ++..|+ |.++.. ....+. +..+...+|+|||+|||+|||+++++
T Consensus 153 --~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 153 --FPPPDYPLSKVALRGHDANVCSLFAN------SHELFG-LITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred --CCCCCCCCCcCcCchhhcccchhhcc------cHHHHH-HHHHhhccCCEEEEechHHHHHHHHH
Confidence 22477764 444443 333321 112344 55567788999999999999999874
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9e-33 Score=247.30 Aligned_cols=204 Identities=23% Similarity=0.362 Sum_probs=142.0
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc--CC----CCCC--CeEEEEec---CCCCCCCC
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR--DP----SSSI--SIALETIS---DGYDKGGS 81 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~--~~----~~~~--~i~~~~l~---~~~~~~~~ 81 (224)
++.|||++|||+|||+|||++|||+|++||++|||++|+.+..++.+ .. .++. .+....+| +++ |++.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~gl-P~g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGL-PEGC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCC-CCCc
Confidence 45799999999999999999999999999999999999988765543 10 1110 24445555 456 4444
Q ss_pred CCcC--------CHHHHHHHHH---HHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHHHHHHH
Q 043256 82 AQAE--------SDQAYVDRFW---QIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAVAAIYH 150 (224)
Q Consensus 82 ~~~~--------~~~~~~~~~~---~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~ 150 (224)
+... ....+...+. ..+.+.+++++++. ++||||+|.+++|+.++|+++|||+++|||++++.+++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 3221 1112232222 23456667776655 7899999999999999999999999999999999998887
Q ss_pred HhhhCC-C-CCCCCCCceeCCCCC---CCCCCCCCCCcCCCCCchHHHHHHHHHHhhcccCCCEEEEcChhhhhHhhh
Q 043256 151 HVNKGL-I-KLPLIGDEVLLPGLP---PLDPQDTPSFINDSASYPAFFDMIVTRQVSNIDKADWILCNTFYELEKEVI 223 (224)
Q Consensus 151 ~~~~~~-~-~~~~~~~~~~~Pglp---~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ilvNTf~eLE~~~l 223 (224)
++.... . .....+..+.+||+| .++..++|.. + ....+.+++. ...+...++++|++|||+|||++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMK-EVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHH-HHHhhcccCCEEEEECHHHHHHHHH
Confidence 664211 1 111112235689997 3566677742 1 1233445555 5556788999999999999999865
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.60 E-value=3.1e-15 Score=131.12 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=86.8
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCC--CCCCC--------c
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDK--GGSAQ--------A 84 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~--~~~~~--------~ 84 (224)
+||+++++|++||++|++.||++|++|||+|||++++.....+.+ . +++|+.+++..+. ..... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---A--GLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---c--CCceeeCCCCHHHHHhhhhhcccccccch
Confidence 489999999999999999999999999999999999976655543 2 3778877643210 00000 0
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEeCCCcccHHHHHHHcCCceEEechhhH
Q 043256 85 ESDQAYVDRFWQIGLQTLTELVERMN--DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSC 143 (224)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a 143 (224)
.........+.......++++++... ++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 01111222233333444455554432 899999999999999999999999999887663
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.55 E-value=3e-14 Score=124.78 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=81.3
Q ss_pred EeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCC-CCCC-c-CCHHHHHHHHHH
Q 043256 20 LSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKG-GSAQ-A-ESDQAYVDRFWQ 96 (224)
Q Consensus 20 ~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~-~-~~~~~~~~~~~~ 96 (224)
+.+|++||++|++.||++|.+|||+|||++++.+.+.+.+ . ++.++.+++..... ..+. . .+.......+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~---~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA---A--GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLD 75 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH---c--CCEEEecCCcCccccccccccCcchHHHHHHHHH
Confidence 3578999999999999999999999999999988877764 2 37888887543211 1110 0 122223333333
Q ss_pred HhHHHHHHHHHhcC--CCcEEEeCCCcccHHHHHHHcCCceEEechh
Q 043256 97 IGLQTLTELVERMN--DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 97 ~~~~~l~~ll~~~~--~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~ 141 (224)
.+...+.++++... ++||||+|.++.|+..+|+++|||++.+++.
T Consensus 76 ~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 76 EAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 23333333333222 7999999999999999999999999988654
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.39 E-value=4.3e-14 Score=127.18 Aligned_cols=139 Identities=27% Similarity=0.328 Sum_probs=88.6
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEE---e-----cCCCCCCCCCCcC
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALET---I-----SDGYDKGGSAQAE 85 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~---l-----~~~~~~~~~~~~~ 85 (224)
+.|++++|+|++||++|+++||++|+++||+||++++..+....... .....+.... + ++++ +.+.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGL-PEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhh-ccchHHHH
Confidence 57999999999999999999999999999999999998766543210 1000011111 1 1122 11111100
Q ss_pred -CHHHHHHHHHHHhHHHHHHHHHhc---C--CCcEEEeCCCcccHHHHHHHcC-CceEEechhhHHHHHHHHHhhh
Q 043256 86 -SDQAYVDRFWQIGLQTLTELVERM---N--DVDCIVFDSFLPWALDVAKKFG-LTGAAFLTQSCAVAAIYHHVNK 154 (224)
Q Consensus 86 -~~~~~~~~~~~~~~~~l~~ll~~~---~--~~~~iI~D~~~~~~~~vA~~lg-iP~v~f~t~~a~~~~~~~~~~~ 154 (224)
........+...+...+++..... . ++||+|+|.++.|...+|.+.+ |+...+++.++...++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 111112223333344444433221 1 4999999999999999998875 9999999999988877655443
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.19 E-value=1.3e-11 Score=92.60 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=75.0
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCC--CCCCCCCCcCCHHHHHHH-
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDG--YDKGGSAQAESDQAYVDR- 93 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~~~~~~~~~~~~~~~- 93 (224)
|++...++.||++|++.||++|.+|||+|++.+.+...+.+.+ . +++|+.++.. + +........+......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---~--Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---A--GLEFVPIPGDSRL-PRSLEPLANLRRLARLI 74 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---T--T-EEEESSSCGGG-GHHHHHHHHHHCHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---c--CceEEEecCCcCc-CcccchhhhhhhHHHHh
Confidence 6889999999999999999999999999999999988877753 2 4899988643 1 0000000011111111
Q ss_pred -HHHHhHHHHHHHHHhc----C---CCcEEEeCCCcccHHHHHHHcCCceEEechhh
Q 043256 94 -FWQIGLQTLTELVERM----N---DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 94 -~~~~~~~~l~~ll~~~----~---~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~ 142 (224)
........+++...+. . ..++++.+.....+..+|+++|||++.....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 75 RGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 0001112222222211 1 46778888877788899999999999876654
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.67 E-value=2e-09 Score=97.23 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=54.1
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCC-cCCHH-HHH--
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQ-AESDQ-AYV-- 91 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~-~~~-- 91 (224)
+|+++|+ +.||+++|..+++.|++|||+||++++.... .+...... .++++.++.+.+..+... ..+.. ..+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSKPS--NIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------S---CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccccc--ceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 6888985 8899999999999999999999999886432 22210112 367777765442222111 11110 000
Q ss_pred --------HHHH----------HHhH-----HHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEech
Q 043256 92 --------DRFW----------QIGL-----QTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 92 --------~~~~----------~~~~-----~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t 140 (224)
..+. ..|. +.+.+.+++. ++|++|+|.+..|+..+|+.+|+|.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-KFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-HHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-ccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 0000 0010 0111112222 578888888777777788888888775433
No 27
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.64 E-value=2.4e-07 Score=83.99 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=74.9
Q ss_pred ceEEEE-eCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecC---CC----CCCCC-CCcC
Q 043256 15 ANCLVL-SYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISD---GY----DKGGS-AQAE 85 (224)
Q Consensus 15 ~hvl~~-p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~---~~----~~~~~-~~~~ 85 (224)
.+|+++ |.++.+|++-+..+++.|++|||+||++++.... ........ .++...++. .. ...+. ....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASHLCG--NITEIDASLSVEYFKKLVKSSAVFRKRG 97 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccCCCC--CEEEEEcCCChHHHHHHHhhhhHHHhhh
Confidence 468754 9999999999999999999999999999775321 11100012 255554431 00 00000 0000
Q ss_pred ---CH-H---HHHHHHHHHh-----HHHHHHHHHhcC-CCcEEEeCCCcccHHHHHHHc-CCceEEechhh
Q 043256 86 ---SD-Q---AYVDRFWQIG-----LQTLTELVERMN-DVDCIVFDSFLPWALDVAKKF-GLTGAAFLTQS 142 (224)
Q Consensus 86 ---~~-~---~~~~~~~~~~-----~~~l~~ll~~~~-~~~~iI~D~~~~~~~~vA~~l-giP~v~f~t~~ 142 (224)
+. . .....+...+ .+.+.++|++.. ++|+||+|.+..++..+|+.+ |+|.+.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 98 VVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 00 0 0111111111 355567776212 799999999888888899999 99987776644
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.32 E-value=1e-05 Score=68.59 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=68.1
Q ss_pred eEEEEeCC-CccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCC-CcCCHHH---H
Q 043256 16 NCLVLSYP-AQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSA-QAESDQA---Y 90 (224)
Q Consensus 16 hvl~~p~p-~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~---~ 90 (224)
||++.... |.||+.-.+.|+++| |||+|+|++.....+.+.. .+....+++ +...... ..+.... .
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP------RFPVREIPG-LGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc------ccCEEEccC-ceEeccCCccchHHHHHHH
Confidence 56644444 889999999999999 6999999998755433322 133444432 1111110 1111111 1
Q ss_pred HH---HHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHH
Q 043256 91 VD---RFWQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCA 144 (224)
Q Consensus 91 ~~---~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~ 144 (224)
.. .+.... ..+.+.++.. +||+||+|. .+.+...|+..|||++.+......
T Consensus 73 ~~~~~~~~~~~-~~~~~~l~~~-~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 73 IRWLARLARRI-RREIRWLREF-RPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHhhHHHHHHH-HHHHHHHHhc-CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 11 111111 2223344444 899999995 445678899999999987665543
No 29
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.21 E-value=2e-06 Score=75.97 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=46.6
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEec
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETIS 73 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~ 73 (224)
.+|+++..|..||++|.+.||+.|.++||+|+|++++...+.+.+ . ++.|..++
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~--a---g~~f~~~~ 55 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA--A---GLAFVAYP 55 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH--h---Ccceeecc
Confidence 589999999999999999999999999999999999988887764 1 25566654
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.16 E-value=2.2e-05 Score=67.14 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=65.3
Q ss_pred EEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeE-EEEecC-CCC-CCCCCCcCCHHHHHH--H
Q 043256 19 VLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIA-LETISD-GYD-KGGSAQAESDQAYVD--R 93 (224)
Q Consensus 19 ~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~-~~~l~~-~~~-~~~~~~~~~~~~~~~--~ 93 (224)
.+.-.|.||+.|.+.++++|.+ ||+|+++++......+.. . ++. +...|. .+. +.+ ..+....... .
T Consensus 5 ~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~--~---~~~~~~~~p~~~~~~~~~--~~~~~~~l~~~~~ 76 (321)
T TIGR00661 5 SVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK--Y---GFKVFETFPGIKLKGEDG--KVNIVKTLRNKEY 76 (321)
T ss_pred EEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh--h---cCcceeccCCceEeecCC--cCcHHHHHHhhcc
Confidence 4566778999999999999999 999999987653222221 1 122 222221 000 111 0111111110 1
Q ss_pred H-HHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechh
Q 043256 94 F-WQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 94 ~-~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~ 141 (224)
+ ...+ ....+++++. +||+||+| +-+.+..+|+.+|||++.+.-+
T Consensus 77 ~~~~~~-~~~~~~l~~~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 77 SPKKAI-RREINIIREY-NPDLIISD-FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred ccHHHH-HHHHHHHHhc-CCCEEEEC-CchHHHHHHHhcCCCEEEEecc
Confidence 1 0111 1223455666 89999999 5666788999999999966543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.85 E-value=0.00036 Score=60.60 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=70.3
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccc-cccCCCCCCCeEEEEecC-CCCCCCCCCcCCHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKS-LHRDPSSSISIALETISD-GYDKGGSAQAESDQAYVDR 93 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~-~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~ 93 (224)
+|++..-..-||+.|.+.+|+.|.++||+|+|+.+..-.+. +-. .. ++.+..++. ++ . +......+...+..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~---~~-g~~~~~~~~~~l-~-~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE---KE-NIPYYSISSGKL-R-RYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc---cc-CCcEEEEeccCc-C-CCchHHHHHHHHHH
Confidence 45555554559999999999999999999999997644321 111 11 377777753 22 1 11011111111111
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEeCCCccc--HHHHHHHcCCceEEechhhH
Q 043256 94 FWQIGLQTLTELVERMNDVDCIVFDSFLPW--ALDVAKKFGLTGAAFLTQSC 143 (224)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~--~~~vA~~lgiP~v~f~t~~a 143 (224)
... .-....++++. +||+||....... +...|+.+|+|+++.-....
T Consensus 77 ~~~--~~~~~~i~~~~-kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~ 125 (352)
T PRK12446 77 MKG--VMDAYVRIRKL-KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT 125 (352)
T ss_pred HHH--HHHHHHHHHhc-CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC
Confidence 111 11223456666 8999999654332 35788889999988666443
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.003 Score=54.97 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCC-EEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHH
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGI-KVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFW 95 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~-~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (224)
|++.--.+-||+.|.+.|++.|.++|+ +|.++.+....+.... ... ++.+..++.+- ..+..........+..+.
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--~~~-~~~~~~I~~~~-~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--KQY-GIEFELIPSGG-LRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--ccc-CceEEEEeccc-ccccCcHHHHHHHHHHHH
Confidence 555555566999999999999999999 5777755544433221 111 37777776432 111111111212222222
Q ss_pred HHhHHHHHHHHHhcCCCcEEEeCCCcc--cHHHHHHHcCCceEEechhh
Q 043256 96 QIGLQTLTELVERMNDVDCIVFDSFLP--WALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 96 ~~~~~~l~~ll~~~~~~~~iI~D~~~~--~~~~vA~~lgiP~v~f~t~~ 142 (224)
. ....+.++++. +||+||.=.... .+...|..+|||.+.--+-.
T Consensus 79 ~--~~~a~~il~~~-kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~ 124 (357)
T COG0707 79 G--VLQARKILKKL-KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA 124 (357)
T ss_pred H--HHHHHHHHHHc-CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC
Confidence 2 23456678888 899999954443 34567778999999855533
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.26 E-value=0.0063 Score=52.01 Aligned_cols=116 Identities=20% Similarity=0.164 Sum_probs=66.9
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFW 95 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (224)
+|++..--.-||......|++.|.++||+|++++...... ..... .. ++++..++..- ..+......+...+....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLVP-KA-GIPLHTIPVGG-LRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhccc-cc-CCceEEEEecC-cCCCChHHHHHHHHHHHH
Confidence 3555555556999999999999999999999998764321 11100 11 36666665211 111000111111111111
Q ss_pred HHhHHHHHHHHHhcCCCcEEEeCCCc-cc-HHHHHHHcCCceEEe
Q 043256 96 QIGLQTLTELVERMNDVDCIVFDSFL-PW-ALDVAKKFGLTGAAF 138 (224)
Q Consensus 96 ~~~~~~l~~ll~~~~~~~~iI~D~~~-~~-~~~vA~~lgiP~v~f 138 (224)
....+..++++. +||+|++.... .+ +...|+..|+|.+..
T Consensus 77 --~~~~~~~~i~~~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 77 --GVLQARKILKKF-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred --HHHHHHHHHHhc-CCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 112455666766 79999987532 33 456788889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.91 E-value=0.023 Score=48.46 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=66.7
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccc-ccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISK-SLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
+|+++.--..||+....+|++.|.++||+|++++.+.... .+. .. . +++++.++-.- ..+......+.......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~--~~-~-g~~~~~i~~~~-~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV--PK-A-GIEFYFIPVGG-LRRKGSFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc--cc-C-CCceEEEeccC-cCCCChHHHHHHHHHHH
Confidence 6777777777999977899999999999999997643211 110 01 1 36666665211 11100000111111111
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEeCCCcc-c-HHHHHHHcCCceEEe
Q 043256 95 WQIGLQTLTELVERMNDVDCIVFDSFLP-W-ALDVAKKFGLTGAAF 138 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~D~~~~-~-~~~vA~~lgiP~v~f 138 (224)
. ....+.+++++. +||+|++..... + +..+++..|+|.+.+
T Consensus 77 ~--~~~~l~~~i~~~-~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 77 K--AVFQARRILKKF-KPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred H--HHHHHHHHHHhc-CCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1 112455667766 799999975432 2 344677789999763
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.85 E-value=0.028 Score=48.33 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=68.1
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecC-CCCCCCCCCcCCHHHHHHH
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISD-GYDKGGSAQAESDQAYVDR 93 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~ 93 (224)
++|+++.-..-||..-++.|++.|.++||+|++++......... .. .. +++++.++. +. . +......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~-~~-~~-g~~~~~~~~~~~-~-~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARL-VP-KA-GIEFHFIPSGGL-R-RKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc-cc-cC-CCcEEEEeccCc-C-CCChHHHHHHHHHH
Confidence 36777776566999999999999999999999998764221111 00 11 366666652 22 1 11000011111111
Q ss_pred HHHHhHHHHHHHHHhcCCCcEEEeCCC-cccH-HHHHHHcCCceEEe
Q 043256 94 FWQIGLQTLTELVERMNDVDCIVFDSF-LPWA-LDVAKKFGLTGAAF 138 (224)
Q Consensus 94 ~~~~~~~~l~~ll~~~~~~~~iI~D~~-~~~~-~~vA~~lgiP~v~f 138 (224)
+.. -..+.+++++. +||+|++... ..|. ..+++..++|.+..
T Consensus 77 ~~~--~~~~~~~ik~~-~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 77 LKG--VLQARKILKRF-KPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHH--HHHHHHHHHhc-CCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 111 12345566666 7999999863 3444 35567789999865
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.21 E-value=0.13 Score=45.02 Aligned_cols=101 Identities=10% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHH--HhHHHHHHHH-
Q 043256 30 PLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQ--IGLQTLTELV- 106 (224)
Q Consensus 30 P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll- 106 (224)
++.+||+.|+++||+|++++....... +. +++.+.++..-.... ....-...+...... .+...+..+.
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~------~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPP------PG-GVRVVRYRPPRGPTS-GTHPYLREFEEAVLRGQAVARALLALRA 83 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCC------CC-CeeEEEecCCCCCCC-CCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999987754321 11 377777753211111 111111111111111 1112222221
Q ss_pred HhcCCCcEEEeCCCcccHHHHHHHc-CCceEEec
Q 043256 107 ERMNDVDCIVFDSFLPWALDVAKKF-GLTGAAFL 139 (224)
Q Consensus 107 ~~~~~~~~iI~D~~~~~~~~vA~~l-giP~v~f~ 139 (224)
+.. +||.|++-..++++..+.+.+ ++|.+.++
T Consensus 84 ~~~-~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 84 KGF-RPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred cCC-CCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 112 799999987666666777775 58887743
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.04 E-value=0.055 Score=47.56 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=64.3
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
++|++..--..||+.|- .|++.|.++|.+|+|+..... .+++..... .+++..++ ..|.. ..+..+.. +
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~-~~~~~~l~----v~G~~--~~l~~~~~-~ 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEV-LYSMEELS----VMGLR--EVLGRLGR-L 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCcc-ccChHHhh----hccHH--HHHHHHHH-H
Confidence 57777777777999999 999999999999999886532 232200111 12333222 11110 01111111 1
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEe-CCCc-ccH-HHHHHHcCCceEEe
Q 043256 95 WQIGLQTLTELVERMNDVDCIVF-DSFL-PWA-LDVAKKFGLTGAAF 138 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~-D~~~-~~~-~~vA~~lgiP~v~f 138 (224)
.. ......+++++. +||+||. |.-. ++. ...|+.+|||.+.+
T Consensus 75 ~~-~~~~~~~~l~~~-kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 75 LK-IRKEVVQLAKQA-KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HH-HHHHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 11 122445566666 7998877 7522 222 34788899999987
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.76 E-value=0.093 Score=44.00 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCccchHHHHHHHHHHHhCCCEEEEEecccccc---ccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhH
Q 043256 23 PAQGHINPLLLFSKRLERKGIKVTIVTTYFISK---SLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGL 99 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~---~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (224)
-|.||+.=.+.||+.|.++|++|+|++...... .+.. . ++.+..+++.. +. ..+ .
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~---~--g~~v~~~~~~~---~~--~~d------------~ 69 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS---A--GFPVYELPDES---SR--YDD------------A 69 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---c--CCeEEEecCCC---ch--hhh------------H
Confidence 478999999999999999999999999874332 2221 1 26666665421 10 001 1
Q ss_pred HHHHHHHHhcCCCcEEEeCCCcccH--HHHHHHcCCceEEe
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPWA--LDVAKKFGLTGAAF 138 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~~--~~vA~~lgiP~v~f 138 (224)
..+.+++++. ++|+||+|....-. ....+..+.+.+++
T Consensus 70 ~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i 109 (279)
T TIGR03590 70 LELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVI 109 (279)
T ss_pred HHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEE
Confidence 1244555555 67888888764222 22333445554544
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.47 E-value=0.4 Score=42.43 Aligned_cols=119 Identities=12% Similarity=-0.086 Sum_probs=61.2
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
.+|+++...-.|+-.=+..+|+.|+++||+||+++.......-... ... ++.++.++.. +................
T Consensus 4 ~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~-~~~-~v~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (415)
T cd03816 4 KRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL-SNP-NITIHPLPPP--PQRLNKLPFLLFAPLKV 79 (415)
T ss_pred cEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh-cCC-CEEEEECCCC--ccccccchHHHHHHHHH
Confidence 4566666666677677788999999999999999865322111100 111 4777776521 10011100111111111
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEeCC-C--c-ccHH-HHHHHcCCceEEe
Q 043256 95 WQIGLQTLTELVERMNDVDCIVFDS-F--L-PWAL-DVAKKFGLTGAAF 138 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~D~-~--~-~~~~-~vA~~lgiP~v~f 138 (224)
.......+..+++.. ++|+|++-. . . .+.. ..++..|+|.++-
T Consensus 80 ~~~~~~~~~~l~~~~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~ 127 (415)
T cd03816 80 LWQFFSLLWLLYKLR-PADYILIQNPPSIPTLLIAWLYCLLRRTKLIID 127 (415)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEE
Confidence 111112233344443 799988732 1 1 2323 3455679998863
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.42 E-value=0.39 Score=40.22 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=59.1
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTE 104 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (224)
-|+-.-...|++.|+++||+|+++++......... .... ............... ...................+..
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK-EVIG--VVVYGRPIDEVLRSA-LPRDLFHLSDYDNPAVVAEFAR 90 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc-cccc--ceeeccccccccCCC-chhhhhHHHhccCHHHHHHHHH
Confidence 47888899999999999999999988654422211 0000 111111100000000 0000011111111122345566
Q ss_pred HHHhcCCCcEEEeCCCcccH---HHHHHHcCCceEEec
Q 043256 105 LVERMNDVDCIVFDSFLPWA---LDVAKKFGLTGAAFL 139 (224)
Q Consensus 105 ll~~~~~~~~iI~D~~~~~~---~~vA~~lgiP~v~f~ 139 (224)
+++.. ++|+|++.....+. ...+++.++|.+...
T Consensus 91 ~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 91 LLEDF-RPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred HHHHc-CCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 67666 78999887755443 246778899988744
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.64 E-value=0.33 Score=41.76 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHH
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTEL 105 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (224)
|+-..+.+|++.|+++||+|+++++.............+ ++.+..++.. +...............+. ..+...
T Consensus 22 G~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~ 94 (398)
T cd03800 22 GQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAP-GVRVVRVPAG--PAEYLPKEELWPYLDEFA----DDLLRF 94 (398)
T ss_pred ceeehHHHHHHHHhccCceEEEEEecCCcccCCcccccc-ceEEEecccc--cccCCChhhcchhHHHHH----HHHHHH
Confidence 788899999999999999999998754432211000111 3666655421 111000000101111111 112223
Q ss_pred HHhcC-CCcEEEeCCCc-cc-HHHHHHHcCCceEEe
Q 043256 106 VERMN-DVDCIVFDSFL-PW-ALDVAKKFGLTGAAF 138 (224)
Q Consensus 106 l~~~~-~~~~iI~D~~~-~~-~~~vA~~lgiP~v~f 138 (224)
++... ++|+|++.... .+ +..+++.+|+|.+..
T Consensus 95 ~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 95 LRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHhcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 33322 68999887533 33 456788899998753
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.59 E-value=0.32 Score=42.12 Aligned_cols=113 Identities=11% Similarity=0.006 Sum_probs=61.5
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
.+|++..--..||+.|-. +++.|.++++++.++..... .+.....+. .+.+..++ -.+. ...+.......
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~----~~g~--~~~~~~~~~~~ 71 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCES-LFDMEELA----VMGL--VEVLPRLPRLL 71 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCcc-ccCHHHhh----hccH--HHHHHHHHHHH
Confidence 367777766679999998 99999998777777664332 122200111 12222222 1111 00111111111
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEe-CCCcccH--HHHHHHcCCceEEech
Q 043256 95 WQIGLQTLTELVERMNDVDCIVF-DSFLPWA--LDVAKKFGLTGAAFLT 140 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~-D~~~~~~--~~vA~~lgiP~v~f~t 140 (224)
. ....+.+++++. +||+|+. +.-..|. ...|++.|||.+.+..
T Consensus 72 ~--~~~~~~~~l~~~-kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 72 K--IRRRLKRRLLAE-PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred H--HHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 1 123556677777 7999766 5322354 3457788999887643
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.26 E-value=0.39 Score=41.50 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCceEEEEeC--CCccchHHHHHHHHHHHhC--CCEEEEEeccccccccccCCCCCCCeEEEEecCCCC-CCCC----CC
Q 043256 13 KLANCLVLSY--PAQGHINPLLLFSKRLERK--GIKVTIVTTYFISKSLHRDPSSSISIALETISDGYD-KGGS----AQ 83 (224)
Q Consensus 13 ~~~hvl~~p~--p~~GH~~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~~~----~~ 83 (224)
+.++|+++.- .|-||+-=.+.+|+.|+.. |++|++++......-... +. +++++.+|.-.. ..|. +.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---~~-gVd~V~LPsl~k~~~G~~~~~d~ 83 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---PA-GVDFVKLPSLIKGDNGEYGLVDL 83 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---cc-cCceEecCceEecCCCceeeeec
Confidence 4568998885 4669999999999999996 999999998755533321 11 599999984210 1111 11
Q ss_pred cCCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCccc
Q 043256 84 AESDQAYVDRFWQIGLQTLTELVERMNDVDCIVFDSFLPW 123 (224)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~ 123 (224)
..+..++.+ .+. +.+..-.+.. +||.+|+|.+=..
T Consensus 84 ~~~l~e~~~-~Rs---~lil~t~~~f-kPDi~IVd~~P~G 118 (400)
T COG4671 84 DGDLEETKK-LRS---QLILSTAETF-KPDIFIVDKFPFG 118 (400)
T ss_pred CCCHHHHHH-HHH---HHHHHHHHhc-CCCEEEEeccccc
Confidence 112222221 111 1223333444 8999999987433
No 44
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.98 E-value=0.11 Score=38.36 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHH--Hh
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTELV--ER 108 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll--~~ 108 (224)
+.+|++.|+++||+||+++.......-.. ... ++++..++-.- ... ... ..... ..+..++ ++
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~--~~~~~~~~~~~--~~~-~~~-~~~~~--------~~~~~~l~~~~ 71 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEE-EED--GVRVHRLPLPR--RPW-PLR-LLRFL--------RRLRRLLAARR 71 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SE-EET--TEEEEEE--S---SSS-GGG-HCCHH--------HHHHHHCHHCT
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCccccc-ccC--CceEEeccCCc--cch-hhh-hHHHH--------HHHHHHHhhhc
Confidence 67899999999999999996544332111 011 37777776211 110 000 00011 1233344 22
Q ss_pred cCCCcEEEeCCCcc-cHHHHHH-HcCCceEEe
Q 043256 109 MNDVDCIVFDSFLP-WALDVAK-KFGLTGAAF 138 (224)
Q Consensus 109 ~~~~~~iI~D~~~~-~~~~vA~-~lgiP~v~f 138 (224)
. ++|+|.+-.... +...+++ ..++|.+.-
T Consensus 72 ~-~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 72 E-RPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp ----SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred c-CCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 3 899988765432 3345555 788998763
No 45
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.85 E-value=1.5 Score=38.36 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCEEEEEeccc
Q 043256 31 LLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~ 52 (224)
+.+|++.|.++||+|+++++..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999763
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.62 E-value=1.2 Score=37.36 Aligned_cols=110 Identities=16% Similarity=0.051 Sum_probs=57.9
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccccccccC-----CCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhH
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRD-----PSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGL 99 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (224)
.|+-.-+..+++.|+++||+|++++........... .... ++++..++... ... ............ ...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~~~~~~~~~-~~~ 87 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVD-GVRVHRVPLPP-YKK---NGLLKRLLNYLS-FAL 87 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecC-CeEEEEEecCC-CCc---cchHHHHHhhhH-HHH
Confidence 599999999999999999999999876443322100 0011 36666655321 110 001111111111 011
Q ss_pred HHHHHHHHhcCCCcEEEeCCCc-cc---HHHHHHHcCCceEEech
Q 043256 100 QTLTELVERMNDVDCIVFDSFL-PW---ALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~-~~---~~~vA~~lgiP~v~f~t 140 (224)
.....+.....++|+|++.... .+ +..+++..++|.+....
T Consensus 88 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h 132 (394)
T cd03794 88 SALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVR 132 (394)
T ss_pred HHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEeh
Confidence 1222222122279999998622 11 23456667999887543
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.53 E-value=1.4 Score=37.63 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.8
Q ss_pred eEEEEeCCCc-cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 16 NCLVLSYPAQ-GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 16 hvl~~p~p~~-GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
+|+++.+|.. |.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5676666655 777889999999999999999998753
No 48
>PLN00142 sucrose synthase
Probab=93.24 E-value=1.3 Score=42.67 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCEEE----EEecccccc-------cccc-CCCCCCCeEEEEecCCCCCCCC-CCcCCHHHHHHHHHHHhH
Q 043256 33 LFSKRLERKGIKVT----IVTTYFISK-------SLHR-DPSSSISIALETISDGYDKGGS-AQAESDQAYVDRFWQIGL 99 (224)
Q Consensus 33 ~La~~La~~G~~VT----~~~t~~~~~-------~~~~-~~~~~~~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 99 (224)
+|+++|+++||.|+ ++|--.... +++. .... +.+++.+|-+- ..+. ...-.-.+++..+.....
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~--~~~I~rvP~g~-~~~~l~~~i~ke~l~p~L~~f~~ 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTE--HSHILRVPFRT-EKGILRKWISRFDVWPYLETFAE 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCC--ceEEEecCCCC-CccccccccCHHHHHHHHHHHHH
Confidence 35578888999775 666422111 1111 0111 36777777432 1111 110000122333322222
Q ss_pred HHHHHHHHhcC-CCcEEEeCCCcc-cH-HHHHHHcCCceEEe
Q 043256 100 QTLTELVERMN-DVDCIVFDSFLP-WA-LDVAKKFGLTGAAF 138 (224)
Q Consensus 100 ~~l~~ll~~~~-~~~~iI~D~~~~-~~-~~vA~~lgiP~v~f 138 (224)
...+.+.+... +||+|.+-+..+ ++ ..+|+++|||.+..
T Consensus 396 ~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T 437 (815)
T PLN00142 396 DAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTI 437 (815)
T ss_pred HHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEE
Confidence 22334434443 699999987654 55 47999999998853
No 49
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=93.13 E-value=0.98 Score=40.55 Aligned_cols=109 Identities=17% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCCceEEEEeCC----Cc-cchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecC-CCCCCCCCCcC
Q 043256 12 SKLANCLVLSYP----AQ-GHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISD-GYDKGGSAQAE 85 (224)
Q Consensus 12 ~~~~hvl~~p~p----~~-GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~ 85 (224)
+++.||+++-.+ .. |=-+=+.+|++.|.++||+|+++++...... . .. ++++..+.. .. +. . .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~--~~--g~~v~~~~~~~~-~~-~---~ 124 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--E--FH--GAKVIGSWSFPC-PF-Y---Q 124 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--c--cc--CceeeccCCcCC-cc-C---C
Confidence 457799977322 22 3335678999999999999999997643211 0 11 233332211 01 00 0 0
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCC--cccH-HHHHHHcCCceEE
Q 043256 86 SDQAYVDRFWQIGLQTLTELVERMNDVDCIVFDSF--LPWA-LDVAKKFGLTGAA 137 (224)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~--~~~~-~~vA~~lgiP~v~ 137 (224)
... .. + .....+..++++. ++|+|.+-.. ..|+ ..+|+..|+|.++
T Consensus 125 ~~~--~~-~--~~~~~l~~~i~~~-kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~ 173 (465)
T PLN02871 125 KVP--LS-L--ALSPRIISEVARF-KPDLIHASSPGIMVFGALFYAKLLCVPLVM 173 (465)
T ss_pred Cce--ee-c--cCCHHHHHHHHhC-CCCEEEECCCchhHHHHHHHHHHhCCCEEE
Confidence 000 00 0 0111344556666 7998866432 2233 3578889999886
No 50
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.93 E-value=2.7 Score=30.59 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=58.7
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFW 95 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (224)
+|+++.--...| ..++++.|.++|++|++++.......... .. ++++..++.+. ......+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--~~--~i~~~~~~~~~--------k~~~~~~~--- 62 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--IE--GIKVIRLPSPR--------KSPLNYIK--- 62 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--hC--CeEEEEecCCC--------CccHHHHH---
Confidence 366666555566 56889999999999999999544322111 12 47777775221 01111121
Q ss_pred HHhHHHHHHHHHhcCCCcEEEeCCCcc-cH-H-HHHHHcC-CceEE
Q 043256 96 QIGLQTLTELVERMNDVDCIVFDSFLP-WA-L-DVAKKFG-LTGAA 137 (224)
Q Consensus 96 ~~~~~~l~~ll~~~~~~~~iI~D~~~~-~~-~-~vA~~lg-iP~v~ 137 (224)
.. .+..++++. +||.|.+-...+ +. . ..++..| +|.+.
T Consensus 63 --~~-~l~k~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 63 --YF-RLRKIIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred --HH-HHHHHhccC-CCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 12 456777777 799997766554 22 2 2445566 66664
No 51
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=92.76 E-value=5.1 Score=38.67 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=65.4
Q ss_pred ceEEEEeCCC-------------ccchHHHHHHHHH--------HHhCCC----EEEEEecccccc-------cccc-CC
Q 043256 15 ANCLVLSYPA-------------QGHINPLLLFSKR--------LERKGI----KVTIVTTYFISK-------SLHR-DP 61 (224)
Q Consensus 15 ~hvl~~p~p~-------------~GH~~P~l~La~~--------La~~G~----~VT~~~t~~~~~-------~~~~-~~ 61 (224)
.+|+++..-+ -|+..=.++||++ |+++|| +|+++|-..... +++. ..
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 4677765555 3666677888886 568999 777888643221 1111 11
Q ss_pred CCCCCeEEEEecCCCCCCC--CCCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEEeCCCcc-cH-HHHHHHcCCceE
Q 043256 62 SSSISIALETISDGYDKGG--SAQAESDQAYVDRFWQIGLQTLTELVERMN-DVDCIVFDSFLP-WA-LDVAKKFGLTGA 136 (224)
Q Consensus 62 ~~~~~i~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~iI~D~~~~-~~-~~vA~~lgiP~v 136 (224)
.+ +.+++.+|-+- ..+ ...--.-.+++..+........+.+.+... +||+|++-...+ ++ ..+|+++|||.+
T Consensus 336 ~~--~~~I~rvp~g~-~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v 412 (784)
T TIGR02470 336 TE--HAWILRVPFRT-ENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQC 412 (784)
T ss_pred CC--ceEEEEecCCC-CcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEE
Confidence 12 47777777432 111 111000112333333222222333443433 799999977553 54 479999999944
Q ss_pred -Eec
Q 043256 137 -AFL 139 (224)
Q Consensus 137 -~f~ 139 (224)
+++
T Consensus 413 ~t~H 416 (784)
T TIGR02470 413 TIAH 416 (784)
T ss_pred EECC
Confidence 444
No 52
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=92.29 E-value=3.2 Score=35.80 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=26.1
Q ss_pred eEE-EEeCCCccc-hHHHHHHHHHHHhCCCEEEEEecc
Q 043256 16 NCL-VLSYPAQGH-INPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 16 hvl-~~p~p~~GH-~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+|+ +.|....|= -.-+..||+.|+++||+||++++.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 455 444444433 345689999999999999999874
No 53
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=92.29 E-value=3.2 Score=36.15 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTE 104 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (224)
-|.-.=..+||+.|+++||+||++++......-......+ ++++..++..- -.+. ........+..+ ....++.
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~ 93 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAP-GVRVRNVVAGP-YEGL-DKEDLPTQLCAF---TGGVLRA 93 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCC-CcEEEEecCCC-cccC-CHHHHHHHHHHH---HHHHHHH
Confidence 4666889999999999999999999764321111100011 37777664211 0110 000111111111 1123334
Q ss_pred HHHhcC-CCcEEEeCCC-ccc-HHHHHHHcCCceEEech
Q 043256 105 LVERMN-DVDCIVFDSF-LPW-ALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 105 ll~~~~-~~~~iI~D~~-~~~-~~~vA~~lgiP~v~f~t 140 (224)
+++... ++|.|-+-.. ..| +..+++.+++|.+..+-
T Consensus 94 ~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 94 EARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 444332 6898866542 233 34567788999876443
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=91.47 E-value=5.5 Score=32.89 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=61.7
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFW 95 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (224)
+|+++.....|+..-+.++++.|.++||+|+++++......... .. +++...++... . .. .... ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~--~~~~~~~~~~~-~-~~---~~~~-~~~~-- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE--AL--GVKVIPIPLDR-R-GI---NPFK-DLKA-- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc--cC--CceEEeccccc-c-cc---ChHh-HHHH--
Confidence 35655555778889999999999999999999998755432111 11 36666655221 0 10 0111 1111
Q ss_pred HHhHHHHHHHHHhcCCCcEEEeCCCccc-HH-HHHHHcCCceEEec
Q 043256 96 QIGLQTLTELVERMNDVDCIVFDSFLPW-AL-DVAKKFGLTGAAFL 139 (224)
Q Consensus 96 ~~~~~~l~~ll~~~~~~~~iI~D~~~~~-~~-~vA~~lgiP~v~f~ 139 (224)
...+..+++.. ++|.|++.....+ .. ..++..+.|.+++.
T Consensus 69 ---~~~~~~~~~~~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 69 ---LLRLYRLLRKE-RPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred ---HHHHHHHHHhc-CCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 11344555555 7899888765443 23 34443666655544
No 55
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.12 E-value=5 Score=34.68 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=61.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccc-cccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFIS-KSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTE 104 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (224)
-|+.=+-.+.++|-++||+|.+.+-.... ..+.. .- ++.+..+.. .+ .+ ..........+ .-.+-.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~--~y--g~~y~~iG~----~g-~~--~~~Kl~~~~~R--~~~l~~ 77 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLD--LY--GIDYIVIGK----HG-DS--LYGKLLESIER--QYKLLK 77 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH--Hc--CCCeEEEcC----CC-CC--HHHHHHHHHHH--HHHHHH
Confidence 48888999999999999999877654322 11111 11 366666532 11 11 11112222211 123344
Q ss_pred HHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHH
Q 043256 105 LVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAV 145 (224)
Q Consensus 105 ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~ 145 (224)
++++. +||++|+ .....+..+|.-+|+|++.|.=+.-+.
T Consensus 78 ~~~~~-~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 78 LIKKF-KPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHHhh-CCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchhh
Confidence 45555 7899996 223456679999999999998865443
No 56
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=87.34 E-value=10 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
|--.-+..|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 445678999999999999999999754
No 57
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=86.70 E-value=13 Score=32.41 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHH
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTEL 105 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (224)
|--.-..+|++.|+++||+|+++++.......... ... ++++..+|........ .+..... ....++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-~~~-~i~v~~~p~~~~~~~~----~~~~~~~-----~~~~l~~~ 83 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY-LTN-GLKVYYLPFVVFYNQS----TLPTFFG-----TFPLLRNI 83 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc-ccC-ceeEEEecceeccCCc----cccchhh-----hHHHHHHH
Confidence 45567899999999999999999975322111100 011 3666666521101110 0101111 11234445
Q ss_pred HHhcCCCcEEEeCC-Cccc---HHHHHHHcCCceEEe
Q 043256 106 VERMNDVDCIVFDS-FLPW---ALDVAKKFGLTGAAF 138 (224)
Q Consensus 106 l~~~~~~~~iI~D~-~~~~---~~~vA~~lgiP~v~f 138 (224)
++.. ++|.|-+=. ...+ +..+++.+|+|.+..
T Consensus 84 ~~~~-~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 84 LIRE-RITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHhc-CCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 5555 789886643 3233 345678899998753
No 58
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=86.62 E-value=11 Score=33.48 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhCCC--EEEEEeccccccc----cc-c-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhH
Q 043256 28 INPLLLFSKRLERKGI--KVTIVTTYFISKS----LH-R-DPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGL 99 (224)
Q Consensus 28 ~~P~l~La~~La~~G~--~VT~~~t~~~~~~----~~-~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (224)
-.=+.+|++.|+++|| +|+++|....... .. . ..... +++++.++.+ +..... .......+.. +.
T Consensus 29 ~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~-gv~v~r~~~~--~~~~~~---~~~~~~~~~~-~~ 101 (439)
T TIGR02472 29 TKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAP-GARIVRLPFG--PRRYLR---KELLWPYLDE-LA 101 (439)
T ss_pred chHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCC-CcEEEEecCC--CCCCcC---hhhhhhhHHH-HH
Confidence 3457899999999997 9999996422110 00 0 00011 3777766532 111101 1111111111 22
Q ss_pred HHHHHHHHhcC-CCcEEEeCCCc-ccH-HHHHHHcCCceEEec
Q 043256 100 QTLTELVERMN-DVDCIVFDSFL-PWA-LDVAKKFGLTGAAFL 139 (224)
Q Consensus 100 ~~l~~ll~~~~-~~~~iI~D~~~-~~~-~~vA~~lgiP~v~f~ 139 (224)
..+..++++.. ++|+|-+-... .+. ..+++.+|+|++.-.
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 33444555432 68999886532 333 456778999986643
No 59
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=86.01 E-value=14 Score=28.66 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=49.6
Q ss_pred hCCCEEEEEeccccccccccCCCCCCCeEEEEecC--CCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC-CCcEEE
Q 043256 40 RKGIKVTIVTTYFISKSLHRDPSSSISIALETISD--GYDKGGSAQAESDQAYVDRFWQIGLQTLTELVERMN-DVDCIV 116 (224)
Q Consensus 40 ~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~iI 116 (224)
++||+|++++........ + +++.+.+.. +-.+....-..+.......-. .+...+.+|.++ . .||+||
T Consensus 1 q~gh~v~fl~~~~~~~~~-----~--GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~-Gf~PDvI~ 71 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----P--GVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQ-GFVPDVII 71 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----C--CcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHc-CCCCCEEE
Confidence 479999999955333211 1 377777642 111111111112211111111 122233333333 3 789999
Q ss_pred eCCCcccHHHHHHHc-CCceEEech
Q 043256 117 FDSFLPWALDVAKKF-GLTGAAFLT 140 (224)
Q Consensus 117 ~D~~~~~~~~vA~~l-giP~v~f~t 140 (224)
.-.-++.+.-+-..+ ++|.+.|+=
T Consensus 72 ~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 72 AHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EcCCcchhhhHHHhCCCCcEEEEEE
Confidence 998877778888888 899888643
No 60
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=85.92 E-value=15 Score=36.63 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=66.7
Q ss_pred CCCceEEEEeCCCc---------------cchHHHHHHHHHHHhCC--CEEEEEeccccccccc--------c-CC----
Q 043256 12 SKLANCLVLSYPAQ---------------GHINPLLLFSKRLERKG--IKVTIVTTYFISKSLH--------R-DP---- 61 (224)
Q Consensus 12 ~~~~hvl~~p~p~~---------------GH~~P~l~La~~La~~G--~~VT~~~t~~~~~~~~--------~-~~---- 61 (224)
.++..|+++..-|- |+..=.++||+.|+++| |+|.++|-....+.+. . ..
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 34677777764332 45566799999999998 8999999654322110 0 00
Q ss_pred ----C--CCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHH----HHHHhc---C--CCcEEEeCCCc-ccH-
Q 043256 62 ----S--SSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLT----ELVERM---N--DVDCIVFDSFL-PWA- 124 (224)
Q Consensus 62 ----~--~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~---~--~~~~iI~D~~~-~~~- 124 (224)
. ...+.+++.+|.|- .+..-....+-..+..|...+...+. .+.++. . .||+|-+-... +++
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP-~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGP-RDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred cccccccCCCCeEEEEeccCC-CCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 0 01147788887541 21111111222223333322222221 122222 1 48988886543 444
Q ss_pred HHHHHHcCCceEE
Q 043256 125 LDVAKKFGLTGAA 137 (224)
Q Consensus 125 ~~vA~~lgiP~v~ 137 (224)
..+++.+|||.+.
T Consensus 326 ~~L~~~lgVP~V~ 338 (1050)
T TIGR02468 326 ALLSGALNVPMVL 338 (1050)
T ss_pred HHHHHhhCCCEEE
Confidence 5788899999775
No 61
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.54 E-value=1.5 Score=36.74 Aligned_cols=99 Identities=14% Similarity=0.228 Sum_probs=55.3
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTE 104 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (224)
-|+-..+..|++.|+++||+|+++++......-.. .. .+.+...+ . + ..... .. ... ....+..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~--~~~~~~~~--~-~-~~~~~-~~--~~~-----~~~~~~~ 77 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP--AR--VVPVPSVP--L-P-GYPEI-RL--ALP-----PRRRVRR 77 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC--CC--ceeecccc--c-C-cccce-Ee--ccc-----chhhHHH
Confidence 59999999999999999999999998644321110 01 12221111 0 0 00000 00 000 0122344
Q ss_pred HHHhcCCCcEEEeCCCcc--c-HHHHHHHcCCceEEech
Q 043256 105 LVERMNDVDCIVFDSFLP--W-ALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 105 ll~~~~~~~~iI~D~~~~--~-~~~vA~~lgiP~v~f~t 140 (224)
.++.. ++|+|++..... | +..++++.++|.+....
T Consensus 78 ~~~~~-~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 115 (364)
T cd03814 78 LLDAF-APDVVHIATPGPLGLAALRAARRLGIPVVTSYH 115 (364)
T ss_pred HHHhc-CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEe
Confidence 44555 799998764332 3 34678889999887544
No 62
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=84.44 E-value=15 Score=30.23 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=56.9
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHH
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTE 104 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (224)
-|+-.-+..|++.|.+.||+|++++.......... .... ...... . ... ........ ......+..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~-~~~~--~~~~~~---~-~~~-----~~~~~~~~--~~~~~~~~~ 79 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEE-EVGG--IVVVRP---P-PLL-----RVRRLLLL--LLLALRLRR 79 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee-eecC--cceecC---C-ccc-----ccchhHHH--HHHHHHHHH
Confidence 68999999999999999999999998744422111 0000 000000 0 000 00000000 011223444
Q ss_pred HHHhcCCCcEEEeCCCcccHH--HHHHHcCCceEEechh
Q 043256 105 LVERMNDVDCIVFDSFLPWAL--DVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 105 ll~~~~~~~~iI~D~~~~~~~--~vA~~lgiP~v~f~t~ 141 (224)
+++.. ++|.|++.....+.. ..+...++|.+...-.
T Consensus 80 ~~~~~-~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 80 LLRRE-RFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred Hhhhc-CCcEEEEechhHHHHHHHHHHhcCCcEEEEecc
Confidence 55555 789998877665443 5788889998875543
No 63
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=83.47 E-value=1.5 Score=32.70 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHH
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTEL 105 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (224)
|=-.-+.+|++.|+++||+||+++......... . ............. ......... ...+..+
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~ 75 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-------E-LVKIFVKIPYPIR----KRFLRSFFF-----MRRLRRL 75 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-------T-EEEE---TT-SST----SS--HHHHH-----HHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-------h-ccceeeeeecccc----cccchhHHH-----HHHHHHH
Confidence 556778999999999999999997664332111 1 0111110000000 011111111 1245666
Q ss_pred HHhcCCCcEEEeCCCc-ccHHHHHHHcCCceEEechhhH
Q 043256 106 VERMNDVDCIVFDSFL-PWALDVAKKFGLTGAAFLTQSC 143 (224)
Q Consensus 106 l~~~~~~~~iI~D~~~-~~~~~vA~~lgiP~v~f~t~~a 143 (224)
+++. ++|+|-+-... .|....+.. ++|.+...-...
T Consensus 76 i~~~-~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 76 IKKE-KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHH-T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHc-CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 6666 79988444433 344444444 999887655443
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=83.19 E-value=15 Score=30.04 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
-|...-+..|++.|+++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 355577889999999999999999886544
No 65
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=82.87 E-value=2.4 Score=30.45 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=33.1
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+|++.+.++-.|-..+.-++..|..+|++|+++-....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 47889999999999999999999999999988765433
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=82.43 E-value=13 Score=31.11 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=57.2
Q ss_pred eCCCc-cchHHHHHHHHHHHhCCCEEEEEeccccccc-cccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHh
Q 043256 21 SYPAQ-GHINPLLLFSKRLERKGIKVTIVTTYFISKS-LHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIG 98 (224)
Q Consensus 21 p~p~~-GH~~P~l~La~~La~~G~~VT~~~t~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (224)
|.... |--.-..+||+.|+++||+|++++....... +.. . +++++.++.. .. ........+
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---~--~~~~~~~~~~--~~------~~~~~~~~~---- 67 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRLVAELEA---E--GSRHIKLPFI--SK------NPLRILLNV---- 67 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh---c--CCeEEEcccc--cc------chhhhHHHH----
Confidence 44443 4446788999999999999999986532211 111 1 2555554311 00 011111111
Q ss_pred HHHHHHHHHhcCCCcEEEeCCC-cccHH-HHHHHcCCceEEech
Q 043256 99 LQTLTELVERMNDVDCIVFDSF-LPWAL-DVAKKFGLTGAAFLT 140 (224)
Q Consensus 99 ~~~l~~ll~~~~~~~~iI~D~~-~~~~~-~vA~~lgiP~v~f~t 140 (224)
..+..+++.. ++|+|++... ..|.. ..++..|+|.+..+.
T Consensus 68 -~~l~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 68 -ARLRRLIREE-KVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred -HHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 1234455555 7999988653 34554 456778999886544
No 67
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.18 E-value=3.3 Score=30.90 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
++++||+...++-+|-.-..-++..|.++|++|+++-..-..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 467899999999999999999999999999999999876554443
No 68
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=80.94 E-value=2.6 Score=36.48 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCceEEEEeCC-CccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 13 KLANCLVLSYP-AQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 13 ~~~hvl~~p~p-~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+..+|+++..- |.||..+...|++.|.++|++|.++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 44578877655 4499999999999999999986666543
No 69
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.92 E-value=2.8 Score=35.03 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=27.9
Q ss_pred eCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 21 SYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 21 p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 334569999999999999999999999987644
No 70
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.73 E-value=1.8 Score=36.35 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=32.1
Q ss_pred eEEEEe----CCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 16 NCLVLS----YPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 16 hvl~~p----~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
||++++ --|.||+.=++.||+.|.++|+.++|++.+...
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e 44 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIE 44 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchh
Confidence 455543 347799999999999999999999999987643
No 71
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=77.81 E-value=27 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=27.1
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688888999999999999999999987544
No 72
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=77.67 E-value=20 Score=31.55 Aligned_cols=99 Identities=7% Similarity=0.057 Sum_probs=57.2
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCC--EEEEEecccc-ccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGI--KVTIVTTYFI-SKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVD 92 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~--~VT~~~t~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (224)
.++-+--.+.|.+.-...|+++|.+++. +|.+.++... .+...+ ..+. ++..+.+|-.. +
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~-~~~~-~~~~~~~P~d~-~-------------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQA-LFGD-DVEHRYLPYDL-P-------------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH-hcCC-CceEEEecCCc-H--------------
Confidence 4566666778999999999999998764 4433322111 111111 0111 24444444211 0
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEeCCCcccH--HHHHHHcCCceEEec
Q 043256 93 RFWQIGLQTLTELVERMNDVDCIVFDSFLPWA--LDVAKKFGLTGAAFL 139 (224)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~--~~vA~~lgiP~v~f~ 139 (224)
..++.+++.. +||+++.-..-.|. ...+++.|+|.+...
T Consensus 114 -------~~~~~~l~~~-~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 -------GAVRRFLRFW-RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -------HHHHHHHHhh-CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 1345556777 78988754333354 456788999998764
No 73
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=77.28 E-value=3.2 Score=34.97 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 25 QGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 25 ~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
-|+-.....|++.|.++||+|++++..
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 488899999999999999999999864
No 74
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=74.59 E-value=61 Score=28.66 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhC--CCEEEEEeccccccc---c---cc-C--CCCCCCeEEEEec---CCCCCCCCCCcCCHHHHHHHH
Q 043256 29 NPLLLFSKRLERK--GIKVTIVTTYFISKS---L---HR-D--PSSSISIALETIS---DGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 29 ~P~l~La~~La~~--G~~VT~~~t~~~~~~---~---~~-~--~~~~~~i~~~~l~---~~~~~~~~~~~~~~~~~~~~~ 94 (224)
--+.+.++.|.++ ||+|+++|+...+.. + .+ - ...+ +++++.+. ..+++..... +....+.+
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~ 93 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDR-PRIVFFLLKYRKLVEASTYPR---FTLLGQAL 93 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCC-CceEEEEecceeeeccccCCc---eeeHHHHH
Confidence 3467778888887 899999998755432 1 11 0 0111 35655442 2221211111 11112222
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHH-cCCceEEech
Q 043256 95 WQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKK-FGLTGAAFLT 140 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~-lgiP~v~f~t 140 (224)
.. +...++.+. .. +||++|.+..++.+..+++. .++|.+.+.-
T Consensus 94 ~~-~~~~~~~~~-~~-~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 94 GS-MILGLEALL-KL-VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred HH-HHHHHHHHH-hc-CCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 11 111223222 22 68999988877777777775 4788777554
No 75
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=72.79 E-value=6 Score=32.92 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=27.0
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.-|+..-...|++.|+++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4499999999999999999999999876443
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=70.65 E-value=7.5 Score=32.71 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred eEEEEeCC-C-ccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 16 NCLVLSYP-A-QGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 16 hvl~~p~p-~-~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+|+++... + -|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56655433 4 48889999999999999999999997654
No 77
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.25 E-value=13 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=33.2
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
++++...+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6889999999999999999999999999999885543
No 78
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.96 E-value=10 Score=29.98 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=38.8
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
.+.+|++.+.++-.|-+...-++..|.++|++|+++-.....+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 457999999999999999999999999999999999876554443
No 79
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.81 E-value=10 Score=30.10 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=36.8
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKS 56 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~ 56 (224)
+.+|++.+.++-.|-+...-++..|..+|++|+++-.....+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~ 124 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEE 124 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 5799999999999999999999999999999988775544433
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=67.17 E-value=9.1 Score=29.45 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=24.4
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEe
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~ 49 (224)
.-||-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 81
>PLN02275 transferase, transferring glycosyl groups
Probab=66.55 E-value=85 Score=27.08 Aligned_cols=120 Identities=13% Similarity=-0.108 Sum_probs=61.0
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCC-EEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGI-KVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYV 91 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (224)
.+.||+++ +-.|.---|..+++.|+++|+ +||+++-............. ++++..++. . +. ..........+
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~--~v~v~r~~~-~-~~-~~~~~~~~~~~ 77 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHP--SIHIHLMVQ-P-RL-LQRLPRVLYAL 77 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCC--cEEEEECCC-c-cc-ccccccchHHH
Confidence 34566665 567777888999999999885 79999764332111111111 377877753 1 11 00111111111
Q ss_pred HHHHH---HhHHHHHHH-HHhcCCCcEEEeCC-Cccc---H-HHHHHHcCCceEEech
Q 043256 92 DRFWQ---IGLQTLTEL-VERMNDVDCIVFDS-FLPW---A-LDVAKKFGLTGAAFLT 140 (224)
Q Consensus 92 ~~~~~---~~~~~l~~l-l~~~~~~~~iI~D~-~~~~---~-~~vA~~lgiP~v~f~t 140 (224)
..+.. .....+.-+ .+.. ++|.|++-. ...+ . ..+++..++|.++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 78 ALLLKVAIQFLMLLWFLCVKIP-RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 11111 111111222 2223 789988743 2222 2 2456678999987554
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=66.26 E-value=12 Score=30.71 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.8
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.-|+-.-+..|++.|.++||+|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 5688889999999999999999999876544
No 83
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.53 E-value=11 Score=31.51 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.4
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.-|.-.-..+|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4488888899999999999999999986543
No 84
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.53 E-value=19 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=29.6
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
||++.-. |.++..-..++.++|.++|++|+++.|+.-.+.+
T Consensus 2 ~i~l~vt-Gs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVT-GSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE--SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEE-CHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 4554443 4455555999999999999999999998655433
No 85
>PLN02846 digalactosyldiacylglycerol synthase
Probab=61.58 E-value=15 Score=33.24 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCceEEEEeCCC---c-cchHHHHHHHHHHHhCC-CEEEEEeccc
Q 043256 13 KLANCLVLSYPA---Q-GHINPLLLFSKRLERKG-IKVTIVTTYF 52 (224)
Q Consensus 13 ~~~hvl~~p~p~---~-GH~~P~l~La~~La~~G-~~VT~~~t~~ 52 (224)
++.||++|.-.. . |=..-.+.++..|+++| |+||++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 457888876433 2 66566777888999999 7999998753
No 86
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=61.52 E-value=70 Score=28.21 Aligned_cols=100 Identities=19% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHh--CCCEEE---EEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHH-HhHHHH
Q 043256 29 NPLLLFSKRLER--KGIKVT---IVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQ-IGLQTL 102 (224)
Q Consensus 29 ~P~l~La~~La~--~G~~VT---~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 102 (224)
.--+.++++|.+ +|++|. ++.+..-.++- ..+..+ .+..+|. .+... ......+....+ .....+
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~---~ip~~g-~~~~~~s----gg~~~-~~~~~~~~~~~~gl~~~~~ 81 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQNL---GIPIIG-PTKELPS----GGFSY-QSLRGLLRDLRAGLVGLTL 81 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhC---CCceeC-CCCCCCC----CCccC-CCHHHHHHHHHhhHHHHHH
Confidence 456788999988 699999 88776433210 011101 2333332 22211 112222221111 111111
Q ss_pred --HHHHHhcC-CCcEEEe--CCCcccHHHHHHHcCCceEEech
Q 043256 103 --TELVERMN-DVDCIVF--DSFLPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 103 --~~ll~~~~-~~~~iI~--D~~~~~~~~vA~~lgiP~v~f~t 140 (224)
..++++.. ++|+||. |+. ....|...|+|.+++-|
T Consensus 82 ~~~~~~~~~~~~p~~v~~~Gg~v---~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVGDIV---PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECcHH---HHHHHHHcCCCceEEEe
Confidence 22344443 6788776 444 66788889999998433
No 87
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=61.41 E-value=10 Score=31.40 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=38.2
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR 59 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~ 59 (224)
..++++--||.|=-.=...+|..|..+|+.|+|++++.....+..
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 468899999988887888999999988999999999977766643
No 88
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=61.02 E-value=19 Score=28.89 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=38.6
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
.+.+|++...++-.|-+...-++-.|.++|++|+++-.....+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 457999999999999999999999999999999998876544443
No 89
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=59.87 E-value=14 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEechhh
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~ 142 (224)
.+.+||+|---..+..-|++.|||.+++..-.
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 57899999877788999999999999877644
No 90
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.79 E-value=20 Score=30.58 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=36.8
Q ss_pred CceEE-EEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccc
Q 043256 14 LANCL-VLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKS 56 (224)
Q Consensus 14 ~~hvl-~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~ 56 (224)
++|++ +--.||.|--.-.-.|.++|..+||+|-++..+...+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 45666 99999999999999999999999999999987755543
No 91
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.67 E-value=15 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEec
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETIS 73 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~ 73 (224)
|=-.=..+|++.|.++||+|++++.......... ... +++++.++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~-~~~--~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKET-EYN--GVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCccc-ccC--CceEEEcC
Confidence 3345678999999999999999997643322111 112 37777665
No 92
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.64 E-value=20 Score=25.82 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=35.2
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKS 56 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~ 56 (224)
||++...++-.|-.-..-++..|..+|++|.+.......+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~ 41 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEE 41 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 58899999999999999999999999999999887644433
No 93
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=59.35 E-value=33 Score=26.12 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEeCCCcccHH--H-HH--HHc-CCceEEechh
Q 043256 93 RFWQIGLQTLTELVERMNDVDCIVFDSFLPWAL--D-VA--KKF-GLTGAAFLTQ 141 (224)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~--~-vA--~~l-giP~v~f~t~ 141 (224)
.+...+.+.+.+++++. +||+||+-..+.-.. . +. ..+ ++|.+.+.|=
T Consensus 72 ~~~~~~~~~l~~~l~~~-~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREF-QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 33444556788888887 899999987663322 2 21 224 5787776663
No 94
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=59.17 E-value=10 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
-|+..|.+.|..|.++|++|+++..+.
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 467899999999999999999999874
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=58.77 E-value=17 Score=32.64 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=24.5
Q ss_pred EeCCCc-cchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 20 LSYPAQ-GHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 20 ~p~p~~-GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
.|+.-. |.-.-.-.|++.|+++||+|+++++.
T Consensus 11 ~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 11 APLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred ccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 344434 44456789999999999999999975
No 96
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=55.68 E-value=19 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=29.9
Q ss_pred eEEEEeCCCccchHH-HHHHHHHHHhCCCEEEEEeccccc
Q 043256 16 NCLVLSYPAQGHINP-LLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 16 hvl~~p~p~~GH~~P-~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+| ++...|.+...- ..+|+++|.++|++|+++.|+.-.
T Consensus 7 ~I-llgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RI-GFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EE-EEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 44 455557777777 699999999999999999987544
No 97
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=53.32 E-value=12 Score=33.39 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~ 51 (224)
.-+-.|++.|+++||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 44578999999999999999964
No 98
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=53.18 E-value=16 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCEEEEEeccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~ 52 (224)
..||+.+..||++||++..+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 567899999999999999884
No 99
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=52.82 E-value=13 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~ 51 (224)
.-.-.|++.|+++||+|+++++.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 45678999999999999999985
No 100
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.71 E-value=16 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
||+.|++.|. +|...||+|+++..+.
T Consensus 49 Ghlv~l~kL~-~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 49 GHLVPLMKLR-RFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhHHHHHHHH-HHHHCCCeEEEEeccc
Confidence 9999999885 7789999999998763
No 101
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=52.00 E-value=31 Score=27.13 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=29.7
Q ss_pred cch-HHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEec
Q 043256 26 GHI-NPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETIS 73 (224)
Q Consensus 26 GH~-~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~ 73 (224)
|=+ .-.-+|+.+|+++|++||+.+.....+.-.. ... +++.+.+|
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-~y~--gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-EYN--GVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-ccC--CeEEEEeC
Confidence 444 3355789999999999999987655432221 112 48888776
No 102
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=50.46 E-value=40 Score=22.34 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.8
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEE
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTI 47 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~ 47 (224)
.-+|++--....|..=+-++|+.|+++|+.|..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345566666679999999999999999998764
No 103
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.13 E-value=67 Score=26.53 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.3
Q ss_pred CCcEEEeCCCccc--HHHHHHHcCCceEEechhhHHHHHHH
Q 043256 111 DVDCIVFDSFLPW--ALDVAKKFGLTGAAFLTQSCAVAAIY 149 (224)
Q Consensus 111 ~~~~iI~D~~~~~--~~~vA~~lgiP~v~f~t~~a~~~~~~ 149 (224)
++.||+++....- +..+|++.|++.+.+-+.+...+..+
T Consensus 217 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m 257 (266)
T cd01018 217 GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENL 257 (266)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHH
Confidence 7899999987653 45899999999988877664444333
No 104
>PLN02316 synthase/transferase
Probab=49.51 E-value=21 Score=35.63 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCceEEEEe-----CCCccchH-HHHHHHHHHHhCCCEEEEEecccc
Q 043256 13 KLANCLVLS-----YPAQGHIN-PLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 13 ~~~hvl~~p-----~p~~GH~~-P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
.++||+++. +.-.|-+. -.-.|++.|+++||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 357888765 33345554 457899999999999999998643
No 105
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=47.76 E-value=85 Score=26.42 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCEEEEEecc
Q 043256 32 LLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~ 51 (224)
+.+++.|+++|++|+.+-.+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 57899999999999998765
No 106
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.25 E-value=31 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccc
Q 043256 30 PLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 30 P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.-+++|..|+++|.+||++......
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccchh
Confidence 3478999999999999999876443
No 107
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=47.00 E-value=67 Score=27.25 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCcEEEeC--CCccc-HHHHHHHcCCceEEec
Q 043256 101 TLTELVERMNDVDCIVFD--SFLPW-ALDVAKKFGLTGAAFL 139 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D--~~~~~-~~~vA~~lgiP~v~f~ 139 (224)
.+.+.+++. +||+|++= ....+ +...|+..|||++...
T Consensus 79 ~l~~~l~~~-~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 79 GLEAVLLEE-KPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 344455555 78988773 33334 4568888999988753
No 108
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=45.85 E-value=25 Score=29.51 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=56.0
Q ss_pred EEeCC-CccchHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHH
Q 043256 19 VLSYP-AQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQ 96 (224)
Q Consensus 19 ~~p~p-~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (224)
+.+.. .-|.-.-+..+++.|.++||+|++++.......... .... ++.+..++... ... ...+.
T Consensus 5 ~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~---~~~~~- 70 (358)
T cd03812 5 IVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKL--GGKIYYIPARK--------KNP---LKYFK- 70 (358)
T ss_pred EeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHc--CCeEEEecCCC--------ccH---HHHHH-
Confidence 44443 448888899999999999999999997644321111 0001 24443332110 011 11111
Q ss_pred HhHHHHHHHHHhcCCCcEEEeCCC-ccc-HHHHHHHcCCceEEec
Q 043256 97 IGLQTLTELVERMNDVDCIVFDSF-LPW-ALDVAKKFGLTGAAFL 139 (224)
Q Consensus 97 ~~~~~l~~ll~~~~~~~~iI~D~~-~~~-~~~vA~~lgiP~v~f~ 139 (224)
.+..+++.. ++|+|.+-.. ..+ ...+++.+++|.++++
T Consensus 71 ----~~~~~~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~ 110 (358)
T cd03812 71 ----KLYKLIKKN-KYDIVHVHGSSASGFILLAAKKAGVKVRIAH 110 (358)
T ss_pred ----HHHHHHhcC-CCCEEEEeCcchhHHHHHHHhhCCCCeEEEE
Confidence 223345555 7898877543 233 3356667888886643
No 109
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=45.78 E-value=36 Score=28.74 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCccc-----HHHHHHHcCCceEEechhh
Q 043256 99 LQTLTELVERMNDVDCIVFDSFLPW-----ALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 99 ~~~l~~ll~~~~~~~~iI~D~~~~~-----~~~vA~~lgiP~v~f~t~~ 142 (224)
++.++.++++..++-+||-|.|.-- ..+.|.+.+||+|++.--.
T Consensus 136 KE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 136 KEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred HHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 3445555555558889999998642 3467779999999987643
No 110
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.12 E-value=41 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
++++|++.+...-||=.=.--+++.|++.|++|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 57899999988779999999999999999999986544
No 111
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.67 E-value=41 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=27.8
Q ss_pred HHHHHHHHhcC--CCcEEEeCCCcccHHHHHHHcCCceEEechhhHH
Q 043256 100 QTLTELVERMN--DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCA 144 (224)
Q Consensus 100 ~~l~~ll~~~~--~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~ 144 (224)
..++..++++. .+++||.+.. +...|+++|+|++.+.++--+
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 45555555432 7999999974 579999999999988874433
No 112
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=44.35 E-value=87 Score=27.24 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=23.3
Q ss_pred CCCcEEEe-CC--CcccHHHHHHHc--CCceEEechhhHH
Q 043256 110 NDVDCIVF-DS--FLPWALDVAKKF--GLTGAAFLTQSCA 144 (224)
Q Consensus 110 ~~~~~iI~-D~--~~~~~~~vA~~l--giP~v~f~t~~a~ 144 (224)
.+|||+|. |+ |......-+++. |||.+.|.+-..+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvW 114 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVW 114 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 47888655 87 333455677777 7998887765543
No 113
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.17 E-value=41 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=19.8
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEec
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAFL 139 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f~ 139 (224)
+||++|.+. +...+|+++|+|.+.+.
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 688888876 45667899999987653
No 114
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=44.05 E-value=42 Score=27.93 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 27 HINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 27 H~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
--.-+.++++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 33557899999999999999998754
No 115
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=43.66 E-value=21 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
.-+-.|++.|+++||+|.++++..
T Consensus 21 ~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC
Confidence 456889999999999999999753
No 116
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.89 E-value=61 Score=21.55 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=27.5
Q ss_pred ceEEEEeCCCc--cchHHHHHHHHHHHhCCCEEEEEec
Q 043256 15 ANCLVLSYPAQ--GHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 15 ~hvl~~p~p~~--GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
-.|+++|.... .+..-.+.+++.|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36888997653 5666788899999999999987543
No 117
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=42.82 E-value=34 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCEEEEEecc
Q 043256 32 LLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~ 51 (224)
+..|..|+++|++||++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 55688999999999988654
No 118
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=42.65 E-value=1.2e+02 Score=23.82 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=23.2
Q ss_pred CCcEE-EeCCCcc-cHHHHHHHcCCceEEechhh
Q 043256 111 DVDCI-VFDSFLP-WALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 111 ~~~~i-I~D~~~~-~~~~vA~~lgiP~v~f~t~~ 142 (224)
.||+| |.|.-.. .+..=|.++|||.+.+.-+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 57875 5576553 56688999999999975533
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.56 E-value=2.3e+02 Score=24.57 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccc-cccccCCCCCCCeEEEEecCCCCCCCCCCcCCHH-HHHHHHHHHhHHHHH
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFIS-KSLHRDPSSSISIALETISDGYDKGGSAQAESDQ-AYVDRFWQIGLQTLT 103 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 103 (224)
-|+-=+-.+-+.|..+||+|-+.+-+.-. ..+.. .. ++.+..+.. .+. ..+. .+.....+. -.|.
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd-~y---gf~~~~Igk----~g~---~tl~~Kl~~~~eR~--~~L~ 77 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD-LY---GFPYKSIGK----HGG---VTLKEKLLESAERV--YKLS 77 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH-Hh---CCCeEeecc----cCC---ccHHHHHHHHHHHH--HHHH
Confidence 45556778899999999998765544222 11111 11 255555431 110 1122 122222221 2456
Q ss_pred HHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEechhhHHH
Q 043256 104 ELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFLTQSCAV 145 (224)
Q Consensus 104 ~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~ 145 (224)
++..+. +||+.|. ....-+..+|.-+|+|++.|.-..-+.
T Consensus 78 ki~~~~-kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 78 KIIAEF-KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred HHHhhc-CCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 666666 8899998 666778899999999999998765443
No 120
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=42.46 E-value=25 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
||+.|++.| ++|...||++.++..+
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 999997765 6888899999998765
No 121
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=42.38 E-value=1.1e+02 Score=27.31 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=53.3
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
.++.++..|+. ...+++.|..-|.+|..+.|......... .. ... + +.+.. ......++ .+
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~---~~--~~~--~-~~~~~-~v~~~~dl---~~-- 346 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA---ED--KRW--L-EMLGV-EVKYRASL---ED-- 346 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH---HH--HHH--H-HhcCC-CceeccCH---HH--
Confidence 37788887777 78888999999999998876632211110 00 000 0 01100 01000111 11
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 95 WQIGLQTLTELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
.+ +.+++. ++|++|... -...+|+++|||.+.+
T Consensus 347 ------~~-~~l~~~-~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 347 ------DM-EAVLEF-EPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred ------HH-HHHhhC-CCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 11 233555 899999874 3567899999998873
No 122
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=41.06 E-value=58 Score=27.04 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTELVERMN 110 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 110 (224)
-..|+++|...+..+++.++......... .... ..+- |. - -.+.+.+++++.
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~-~~~~-----~~~~-G~--l------------------~~e~l~~~l~e~- 65 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAE-QIGP-----VRVG-GF--L------------------GAEGLAAFLREE- 65 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchh-ccCC-----eeec-Cc--C------------------CHHHHHHHHHHc-
Confidence 36789999998877777666544433221 0010 1110 10 0 123445566665
Q ss_pred CCcEEEeCCCcccH-------HHHHHHcCCceEEech
Q 043256 111 DVDCIVFDSFLPWA-------LDVAKKFGLTGAAFLT 140 (224)
Q Consensus 111 ~~~~iI~D~~~~~~-------~~vA~~lgiP~v~f~t 140 (224)
++ ++|.|...+.+ ..+|++.|||++.|--
T Consensus 66 ~i-~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 66 GI-DLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred CC-CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 44 36667777664 2467778888777644
No 123
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=39.75 E-value=1e+02 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred EEEeCCCccchHHHHHHHHHHHhC-C--CEEEEEec
Q 043256 18 LVLSYPAQGHINPLLLFSKRLERK-G--IKVTIVTT 50 (224)
Q Consensus 18 l~~p~p~~GH~~P~l~La~~La~~-G--~~VT~~~t 50 (224)
++-..-|.||.-..-.|.+.|.++ | .+|+++-.
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~ 38 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDL 38 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEeh
Confidence 345566889999999999999864 4 45666533
No 124
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=39.28 E-value=81 Score=27.41 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=55.6
Q ss_pred CccchHHHHHHHHHHHhC-CCEEEEEeccccccc-----cccCCCCCCCeEEEEecC-CCCCCCCCCcCCHHHHHHHHHH
Q 043256 24 AQGHINPLLLFSKRLERK-GIKVTIVTTYFISKS-----LHRDPSSSISIALETISD-GYDKGGSAQAESDQAYVDRFWQ 96 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~-G~~VT~~~t~~~~~~-----~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (224)
..--++=|..+.++|.++ ++++.++.|...... +..- ... ++... ++ .+...+ .....+......
T Consensus 9 tRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~-~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~~~--- 80 (365)
T TIGR03568 9 TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEI-EKD-GFDID--EKIEILLDS-DSNAGMAKSMGL--- 80 (365)
T ss_pred cChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHH-HHc-CCCCC--CccccccCC-CCCCCHHHHHHH---
Confidence 445566677778888774 789888877644321 1100 000 11111 11 010000 001122222211
Q ss_pred HhHHHHHHHHHhcCCCcEEEe--CCCccc-HHHHHHHcCCceEEech
Q 043256 97 IGLQTLTELVERMNDVDCIVF--DSFLPW-ALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 97 ~~~~~l~~ll~~~~~~~~iI~--D~~~~~-~~~vA~~lgiP~v~f~t 140 (224)
+...+.+++++. +||+|++ |.+..- +..+|..+|||++.+..
T Consensus 81 -~~~~~~~~~~~~-~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 81 -TIIGFSDAFERL-KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHG 125 (365)
T ss_pred -HHHHHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEEC
Confidence 234567777777 7898876 555543 46789999999996544
No 125
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=39.22 E-value=51 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=21.5
Q ss_pred CCcEEEeCCCc--ccHHHHHHHcCCceEEec
Q 043256 111 DVDCIVFDSFL--PWALDVAKKFGLTGAAFL 139 (224)
Q Consensus 111 ~~~~iI~D~~~--~~~~~vA~~lgiP~v~f~ 139 (224)
++..||++.-- .-+.-+|+++|||.++=.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 56788887654 456789999999999844
No 126
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.05 E-value=66 Score=25.37 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
|+++-..|.|=..-...||.++..+|.+|.+++++.+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 55888889999999999999999999999999998654
No 127
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.76 E-value=65 Score=26.66 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred CcEE-EeCCCcc-cHHHHHHHcCCceEEechh
Q 043256 112 VDCI-VFDSFLP-WALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 112 ~~~i-I~D~~~~-~~~~vA~~lgiP~v~f~t~ 141 (224)
||+| |.|.-.- -|..=|+++|||++.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 7765 6687654 4567899999999986553
No 128
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.65 E-value=53 Score=25.55 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=28.8
Q ss_pred EeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 20 LSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 20 ~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
+...|.+...-..+|.+.|.++|++|.++.|+.-.+.+
T Consensus 5 lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 5 LAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 34446666677789999999999999999988554433
No 129
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.17 E-value=96 Score=27.03 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCccc------H----HHHHHHcCCceEEe
Q 043256 99 LQTLTELVERMNDVDCIVFDSFLPW------A----LDVAKKFGLTGAAF 138 (224)
Q Consensus 99 ~~~l~~ll~~~~~~~~iI~D~~~~~------~----~~vA~~lgiP~v~f 138 (224)
...+.++++.. ++|++|+-..+.. + ..|.+++|||.++-
T Consensus 69 ~~~i~~mv~~~-~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 69 LKKILEMVKKL-KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHhc-CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34455666666 8999999987653 1 23666899999863
No 130
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.11 E-value=81 Score=22.52 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=32.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
||++..-++.|=-.....|++.|+++|.+|-++-++.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888875
No 131
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.93 E-value=38 Score=26.89 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEecCCCCCCCCCC--cCCHHHHHHHHHHHhHHHHHHHHH
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETISDGYDKGGSAQ--AESDQAYVDRFWQIGLQTLTELVE 107 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ll~ 107 (224)
+..|++.|.+.||+|+++.+....+-... ..... .+++.....+..+.+... .+..+ .+... -.+..++.
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~-pl~~~~~~~~~~~~~~~~~~v~GTP--aDcv~----~al~~~~~ 88 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGTGHSITLHK-PLRVTEVEPGHDPGGVEAYAVSGTP--ADCVK----LALDGLLP 88 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSS-EEEEEEEE-TTCCSTTEEEEESS-H--HHHHH----HHHHCTST
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCC-CeEEEEEEecccCCCCCEEEEcCcH--HHHHH----HHHHhhhc
Confidence 67789999777899999999877543321 01111 255533321111122111 11111 11111 11233333
Q ss_pred hcCCCcEEEeCC----------Cccc---HHHHHHHcCCceEEechhhH
Q 043256 108 RMNDVDCIVFDS----------FLPW---ALDVAKKFGLTGAAFLTQSC 143 (224)
Q Consensus 108 ~~~~~~~iI~D~----------~~~~---~~~vA~~lgiP~v~f~t~~a 143 (224)
.. +||+||+-. +.+. ++.-|...|||.+.|+...-
T Consensus 89 ~~-~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 89 DK-KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp TS-S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred cC-CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 33 589999853 2222 23455678999999887443
No 132
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=37.82 E-value=53 Score=25.67 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCcEEEeCCCcccH--HHHHHHcCCceEEechhh
Q 043256 101 TLTELVERMNDVDCIVFDSFLPWA--LDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D~~~~~~--~~vA~~lgiP~v~f~t~~ 142 (224)
.++.+++...++.-||.|.|++.+ ..+|.++|--++.+=...
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 446666665567789999999753 678889998887764433
No 133
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=37.78 E-value=97 Score=26.50 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=56.5
Q ss_pred CCccchHHHHHHHHHHHhC-CCEEEEEecccccccccc-C-CCCCCCeEE-EEecCCCCCCCCCCcCCHHHHHHHHHHHh
Q 043256 23 PAQGHINPLLLFSKRLERK-GIKVTIVTTYFISKSLHR-D-PSSSISIAL-ETISDGYDKGGSAQAESDQAYVDRFWQIG 98 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~~-G~~VT~~~t~~~~~~~~~-~-~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (224)
....|+.=+..+.++|.++ ++++.++.|......... . .. +|.. +.+. +...+ ........ . +
T Consensus 8 gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~---~i~~~~~~~--~~~~~----~~~~~~~~---~-~ 74 (365)
T TIGR00236 8 GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF---HLPPDYDLN--IMSPG----QTLGEITS---N-M 74 (365)
T ss_pred ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc---CCCCCeeee--cCCCC----CCHHHHHH---H-H
Confidence 4557888888889999886 677777776544322211 0 01 1221 1111 10011 12211111 1 1
Q ss_pred HHHHHHHHHhcCCCcEEEe--CCCccc-HHHHHHHcCCceEEe
Q 043256 99 LQTLTELVERMNDVDCIVF--DSFLPW-ALDVAKKFGLTGAAF 138 (224)
Q Consensus 99 ~~~l~~ll~~~~~~~~iI~--D~~~~~-~~~vA~~lgiP~v~f 138 (224)
...+.+++++. +||+|++ |..... +..+|+.+|||++..
T Consensus 75 ~~~l~~~l~~~-~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 75 LEGLEELLLEE-KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHc-CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 24567777777 7899877 555444 567889999999854
No 134
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.71 E-value=2e+02 Score=22.49 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=59.1
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCC----CCCCCC--CCcCCH
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDG----YDKGGS--AQAESD 87 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~----~~~~~~--~~~~~~ 87 (224)
..+|.+---||.|--.-.+.++..|..+|++|-=+.|+....-= ...+++++.+..+ +...+. ......
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gG-----kR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGG-----KRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCC-----eEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 46899999999999999999999999999998865555443110 0013677776522 101111 011111
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCc
Q 043256 88 QAYVDRFWQIGLQTLTELVERMNDVDCIVFDSFL 121 (224)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~ 121 (224)
.-..+.+.....+.++..++. .|+||.|-.-
T Consensus 80 ~V~v~~le~i~~~al~rA~~~---aDvIIIDEIG 110 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEE---ADVIIIDEIG 110 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhc---CCEEEEeccc
Confidence 112233333344455555554 5999999753
No 135
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=37.42 E-value=95 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
...+.|+++-.+|||+|.++......
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 45778889999999999999876443
No 136
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.40 E-value=58 Score=29.92 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEec
Q 043256 103 TELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAFL 139 (224)
Q Consensus 103 ~~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f~ 139 (224)
++.+++. +||+||.+. |...+|+++|||.+...
T Consensus 367 ~~~I~~~-~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 367 GDMIARV-EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHhc-CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3344444 799999887 56678999999997644
No 137
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=37.09 E-value=61 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.9
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
.-|+-..+..|++.|.++|++|.+++....
T Consensus 11 ~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 11 VGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred CccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 358999999999999999999999987543
No 138
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=37.04 E-value=47 Score=23.24 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~ 51 (224)
.|.+.|++.|.++|.+|.+.=+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 58899999999999998876554
No 139
>PRK09620 hypothetical protein; Provisional
Probab=37.03 E-value=39 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=21.7
Q ss_pred EeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 20 LSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 20 ~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+.-.+.|.+= ..||+.|..+|++||++...
T Consensus 23 itN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 23 HTNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred ecCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 3334444443 67899999999999999754
No 140
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=36.84 E-value=5.1 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=14.9
Q ss_pred EeCCCccchHHHHHHHHHHHhCC
Q 043256 20 LSYPAQGHINPLLLFSKRLERKG 42 (224)
Q Consensus 20 ~p~p~~GH~~P~l~La~~La~~G 42 (224)
=.||+||-+||-+++---|-+.|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 45789999988766544443333
No 141
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=36.81 E-value=61 Score=26.89 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
|--.-...|++.|+++||.|++++....
T Consensus 14 G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 14 GIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred cHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 6667789999999999999999987543
No 142
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.48 E-value=76 Score=22.31 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=30.4
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
++....++..|-.-..-++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 56677788899999999999999999999988654
No 143
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=36.39 E-value=41 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 19 VLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 19 ~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
++.-.+.|-+= ..||+.|+++|++||++...
T Consensus 19 ~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 44444444332 46789999999999998743
No 144
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=36.30 E-value=61 Score=29.26 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=31.7
Q ss_pred ceEEEEeCCCccch-----HHHHHHHHHHHhCCCEEEEEeccccccccc
Q 043256 15 ANCLVLSYPAQGHI-----NPLLLFSKRLERKGIKVTIVTTYFISKSLH 58 (224)
Q Consensus 15 ~hvl~~p~p~~GH~-----~P~l~La~~La~~G~~VT~~~t~~~~~~~~ 58 (224)
.+|+++| ++|=. ....+|+++|.+||.+|.|...| ...|++
T Consensus 307 ~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHP-VAGRMP 352 (462)
T PRK09444 307 HSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHP-VAGRLP 352 (462)
T ss_pred CcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc-ccccCC
Confidence 4788888 66643 57899999999999999998876 333443
No 145
>PTZ00445 p36-lilke protein; Provisional
Probab=36.03 E-value=44 Score=27.04 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.3
Q ss_pred cchHH-HHHHHHHHHhCCCEEEEEecccc
Q 043256 26 GHINP-LLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 26 GH~~P-~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+|..| +..|.++|.+.|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999986533
No 146
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.93 E-value=66 Score=29.52 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=21.1
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
+||+||.+. +...+|+++|||.+.+
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 689998887 5678899999999865
No 147
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=35.56 E-value=58 Score=26.67 Aligned_cols=44 Identities=25% Similarity=0.162 Sum_probs=38.3
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
..-+++.-.|+.|..+=.++++...+++|..|-++++......+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 34677999999999999999999999999999999998665544
No 148
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.30 E-value=71 Score=23.69 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=27.6
Q ss_pred EEEEeCCCc-cchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 17 CLVLSYPAQ-GHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 17 vl~~p~p~~-GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+|++-.|-. -.+...+-++.+|-.+|++||+..++.-.
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 345555544 44555788999999999999999887443
No 149
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=34.86 E-value=59 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=23.5
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEech
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t 140 (224)
.+.+||+|-=..-+...|++.|||+..+-.
T Consensus 28 ~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 28 DVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 567899996545567899999999987644
No 150
>PRK05920 aromatic acid decarboxylase; Validated
Probab=34.86 E-value=62 Score=25.88 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=29.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISK 55 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~ 55 (224)
+|+ +...|.....=..++.++|.+.|++|+++.|..-..
T Consensus 5 rIl-lgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~ 43 (204)
T PRK05920 5 RIV-LAITGASGAIYGVRLLECLLAADYEVHLVISKAAQK 43 (204)
T ss_pred EEE-EEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 444 334566666788999999999999999999885543
No 151
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.78 E-value=48 Score=25.39 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCccch-HHHHHHHHHHHhCCCEEEEEec
Q 043256 13 KLANCLVLSYPAQGHI-NPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~-~P~l~La~~La~~G~~VT~~~t 50 (224)
+..+|+++.-+ |+- -=-+.+||.|+++|++|+++..
T Consensus 24 ~~~~v~il~G~--GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGP--GNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-S--SHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECC--CCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 45788888844 433 2367889999999999999554
No 152
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.74 E-value=44 Score=24.36 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 043256 31 LLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~ 49 (224)
++..|++|+.||++|+.+-
T Consensus 25 ~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 25 FLDVAKRLAERGFDVLATD 43 (129)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 6789999999998887543
No 153
>PRK12342 hypothetical protein; Provisional
Probab=34.29 E-value=81 Score=26.16 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=53.8
Q ss_pred cchHHH----HHHHHHHHhCCCEEEEEeccccc--cc-c-cc-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHH
Q 043256 26 GHINPL----LLFSKRLERKGIKVTIVTTYFIS--KS-L-HR-DPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQ 96 (224)
Q Consensus 26 GH~~P~----l~La~~La~~G~~VT~~~t~~~~--~~-~-~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (224)
.=+||+ ++.|-+|..+|-+||+++..... .. + +. .+-+- =+-+.+.|.- ..+. +....
T Consensus 31 ~~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGa--D~avli~d~~-~~g~----D~~at------ 97 (254)
T PRK12342 31 AKISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGP--HSLYLVQDAQ-LEHA----LPLDT------ 97 (254)
T ss_pred ccCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCC--CEEEEEecCc-cCCC----CHHHH------
Confidence 345664 66777777679999999876433 22 2 21 11110 0223333221 1121 11100
Q ss_pred HhHHHHHHHHHhcCCCcEEEeCCCc-----cc-HHHHHHHcCCceEEech
Q 043256 97 IGLQTLTELVERMNDVDCIVFDSFL-----PW-ALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 97 ~~~~~l~~ll~~~~~~~~iI~D~~~-----~~-~~~vA~~lgiP~v~f~t 140 (224)
...|...++.. .+|+|++---. +- +..+|+.||+|++.+..
T Consensus 98 --a~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 98 --AKALAAAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred --HHHHHHHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 12334455555 69999985433 22 46899999999998765
No 154
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.26 E-value=76 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.4
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
+||+||.+. +...+|+++|||++.+
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 688888776 5677999999998765
No 155
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=34.25 E-value=95 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=21.8
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
.+|+++.--+-| .+||+.|..+|+.|++-++..
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccC
Confidence 356666644444 367889988998877655443
No 156
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=34.23 E-value=66 Score=25.12 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=28.6
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKS 56 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~ 56 (224)
+|++.- -|..-..-..++.+.|.++|++|.++.|+.-.+.
T Consensus 3 ~Ill~v-tGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 3 NILLAV-SGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred EEEEEE-eChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 444443 3444455589999999999999999998855433
No 157
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.17 E-value=1.2e+02 Score=28.55 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=23.1
Q ss_pred CCcEEEe-CCC-cc-cHHHHHHHcCC--ceEEechhhHH
Q 043256 111 DVDCIVF-DSF-LP-WALDVAKKFGL--TGAAFLTQSCA 144 (224)
Q Consensus 111 ~~~~iI~-D~~-~~-~~~~vA~~lgi--P~v~f~t~~a~ 144 (224)
+|||+|. |.- ++ ..+.-+++.|+ |.+.|.+-+.+
T Consensus 310 kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVW 348 (608)
T PRK01021 310 NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIW 348 (608)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 7898765 873 23 35678888996 88777664443
No 158
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.84 E-value=1e+02 Score=20.15 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=26.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
+|++++. ..++..-.+.+++.|.+.|++|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5667775 567888899999999999999887443
No 159
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=33.79 E-value=43 Score=26.65 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=21.9
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
+|.++. +.|+.- -.+.++...|||+||-++-..
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 455555 334432 256888889999999887543
No 160
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=33.65 E-value=72 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=23.1
Q ss_pred CCccchHHH-HHHHHHHHhCCCEEEEEecccc
Q 043256 23 PAQGHINPL-LLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 23 p~~GH~~P~-l~La~~La~~G~~VT~~~t~~~ 53 (224)
.|.+-..-- +++.++|.+.|++|+++.|+.-
T Consensus 8 TGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 8 TGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred ecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 344333444 5999999999999999988754
No 161
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=33.55 E-value=94 Score=23.44 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=33.3
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+++.-.||.|=-.....|++.|+.+|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 46778889999999999999999999999999987554
No 162
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=33.37 E-value=1.2e+02 Score=25.95 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCcEEEeCCCcccHHHH--HHHcCCceEEech
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPWALDV--AKKFGLTGAAFLT 140 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~~~~v--A~~lgiP~v~f~t 140 (224)
..+.+++++. +||+||++.-......+ +..+++|.+...|
T Consensus 94 ~~l~~~l~~~-~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 94 KRLKLLLQAE-KPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHHHh-CcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 3455666666 89999997543322222 2346789875443
No 163
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.26 E-value=78 Score=25.08 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=57.8
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc---ccccc-CCCCCCCeEEEEecCCCCCCCCCCcCCHH
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS---KSLHR-DPSSSISIALETISDGYDKGGSAQAESDQ 88 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~---~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 88 (224)
.+.-|.++.-++.|=....+.+|-+.+.+|.+|.++---... ..... ...+ ++++.....+..-. . .+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~--~v~~~~~g~~~~~~---~-~~~~ 94 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG--GVEFHVMGTGFTWE---T-QDRE 94 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC--CcEEEECCCCCccc---C-CCcH
Confidence 456788999999999999999999999999999887432111 11110 0112 37777665432101 1 1111
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCcEEEeCCCc
Q 043256 89 AYVDRFWQIGLQTLTELVERMNDVDCIVFDSFL 121 (224)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~ 121 (224)
+........ -...++.+.+- ++|.||.|-+.
T Consensus 95 e~~~~~~~~-~~~a~~~l~~~-~ydlvVLDEi~ 125 (191)
T PRK05986 95 RDIAAAREG-WEEAKRMLADE-SYDLVVLDELT 125 (191)
T ss_pred HHHHHHHHH-HHHHHHHHhCC-CCCEEEEehhh
Confidence 112222111 12234444443 79999999865
No 164
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=33.19 E-value=73 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=27.9
Q ss_pred ceEEEEeCCCccc-----hHHHHHHHHHHHhCCCEEEEEecc
Q 043256 15 ANCLVLSYPAQGH-----INPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 15 ~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
.+|+++| |+|= ..+..+|++.|.+||.+|.|...|
T Consensus 308 ~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 347 (463)
T PF02233_consen 308 KKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHP 347 (463)
T ss_dssp SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 4899998 6664 358999999999999999998876
No 165
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.11 E-value=52 Score=26.82 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=64.4
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFW 95 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (224)
=|++--+|+.|-..=.-+|||.|.+++++|..++.+... .++ .|...|-. -..+.+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-------------~i~--~DEslpi~------ke~yres~~ 61 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-------------GIL--WDESLPIL------KEVYRESFL 61 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-------------hee--cccccchH------HHHHHHHHH
Confidence 367888999999999999999999999987655443111 111 01100100 001222222
Q ss_pred HHhHHHHHHHH-HhcCCCcEEEeCCCccc------HHHHHHHcCCceEEechhhHHHHHHHHHhhh
Q 043256 96 QIGLQTLTELV-ERMNDVDCIVFDSFLPW------ALDVAKKFGLTGAAFLTQSCAVAAIYHHVNK 154 (224)
Q Consensus 96 ~~~~~~l~~ll-~~~~~~~~iI~D~~~~~------~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~ 154 (224)
. ....++ .++ +-.+||+|....- ..-.|+++..++.+.++-..--.++-.....
T Consensus 62 k----s~~rlldSal-kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 62 K----SVERLLDSAL-KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred H----HHHHHHHHHh-cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 2 111122 223 2348999987543 2357888999988887766555554444433
No 166
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.92 E-value=97 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=35.3
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.-|+++..+|.|=..-...||+.|.++|++|.+++.+...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 3566899999999999999999999999999999987654
No 167
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=32.55 E-value=91 Score=25.90 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=53.7
Q ss_pred cchHHH----HHHHHHHHhC-C-CEEEEEeccccc----ccccc-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHH
Q 043256 26 GHINPL----LLFSKRLERK-G-IKVTIVTTYFIS----KSLHR-DPSSSISIALETISDGYDKGGSAQAESDQAYVDRF 94 (224)
Q Consensus 26 GH~~P~----l~La~~La~~-G-~~VT~~~t~~~~----~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (224)
.=+||+ ++.|-+|..+ | .+||+++..... ..++. .+-+- =+-+.+.+.- ..+. +....
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGa--D~avli~d~~-~~g~----D~~~t---- 100 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGP--DELIVVIDDQ-FEQA----LPQQT---- 100 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCC--CEEEEEecCc-ccCc----CHHHH----
Confidence 346664 6777788775 3 799999876433 11332 11111 0223333211 1121 11101
Q ss_pred HHHhHHHHHHHHHhcCCCcEEEeCCCc-----c-cHHHHHHHcCCceEEechh
Q 043256 95 WQIGLQTLTELVERMNDVDCIVFDSFL-----P-WALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 95 ~~~~~~~l~~ll~~~~~~~~iI~D~~~-----~-~~~~vA~~lgiP~v~f~t~ 141 (224)
...|...+++. .+|+|++-.-. + -...+|+.||+|++.+.+.
T Consensus 101 ----A~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 101 ----ASALAAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred ----HHHHHHHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 12334455555 69999985433 2 2357999999999987763
No 168
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.23 E-value=98 Score=21.78 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 23 PAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
...|+-..+++..+.+.++|..|..+|.....
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 36788899999999999999999777765443
No 169
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=32.03 E-value=32 Score=25.66 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 043256 23 PAQGHINPLLLFSKRLER 40 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~ 40 (224)
|-+|-.||+|+|+-.|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 578999999999998874
No 170
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=31.91 E-value=81 Score=27.52 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=25.9
Q ss_pred ceEEEEeCC-CccchHHHHHHHHHHHhCC---CEEEEE
Q 043256 15 ANCLVLSYP-AQGHINPLLLFSKRLERKG---IKVTIV 48 (224)
Q Consensus 15 ~hvl~~p~p-~~GH~~P~l~La~~La~~G---~~VT~~ 48 (224)
.+|++++.- |.||.-..-.|.+.|..+| .+|.++
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 478866644 6699999999999999876 345544
No 171
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=31.86 E-value=94 Score=26.85 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCcEEEe--CCCccc-HHHHHHHcCCceEEechh
Q 043256 99 LQTLTELVERMNDVDCIVF--DSFLPW-ALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 99 ~~~l~~ll~~~~~~~~iI~--D~~~~~-~~~vA~~lgiP~v~f~t~ 141 (224)
...+.+++++. +||+||+ |-+..- ++.+|..++||.+..-..
T Consensus 56 ~~~~~~~~~~~-~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 56 IIELADVLERE-KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHH-T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHhc-CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 34667777777 7898766 776554 467889999998887765
No 172
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=31.35 E-value=42 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=27.2
Q ss_pred EeCCCc-cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 20 LSYPAQ-GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 20 ~p~p~~-GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
+|||.. |.-+=+.++++.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 688876 9999999999999775 8999998653
No 173
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.13 E-value=1.2e+02 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=33.5
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
-|+++..+|.|=-.-...||..|+.+|.+|.++..+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45578888999999999999999999999999998854
No 174
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.06 E-value=78 Score=24.65 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=26.7
Q ss_pred eCCCccchHH-HHHHHHHHHh-CCCEEEEEeccccc
Q 043256 21 SYPAQGHINP-LLLFSKRLER-KGIKVTIVTTYFIS 54 (224)
Q Consensus 21 p~p~~GH~~P-~l~La~~La~-~G~~VT~~~t~~~~ 54 (224)
..-|.||... ..++.+.|.+ +|++|.++.|+.-.
T Consensus 5 gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 5 GITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 3345688876 8899999985 69999999998554
No 175
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=30.83 E-value=72 Score=23.24 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCcEEEeCCCcc--cHHHHHHHcCCceEEech
Q 043256 100 QTLTELVERMNDVDCIVFDSFLP--WALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~--~~~~vA~~lgiP~v~f~t 140 (224)
+.++++++.. .|.+||++-+.. +...+|++.|+|.....-
T Consensus 72 ~~l~~l~~~~-~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 72 ERLEKLFSYN-PPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp CHHHHHCTTT--S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHhCCC-CCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3455555543 678889988763 567999999999887544
No 176
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=30.71 E-value=62 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCEEEEEecccccccc
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
..+|.++|.++|++|.++.|+.-...+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 478999999999999999998555433
No 177
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.65 E-value=51 Score=24.63 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccc
Q 043256 29 NPLLLFSKRLERKGIKVTIVTTYFISKSLH 58 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t~~~~~~~~ 58 (224)
--.+-|+.+|-.+|++|++..++.-.+.++
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 346889999999999999999986665543
No 178
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=30.19 E-value=83 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred EEeCCCccch-HHHHHHHHHHHhC--CCEEEEEeccccc
Q 043256 19 VLSYPAQGHI-NPLLLFSKRLERK--GIKVTIVTTYFIS 54 (224)
Q Consensus 19 ~~p~p~~GH~-~P~l~La~~La~~--G~~VT~~~t~~~~ 54 (224)
++...|.|+. .=..+|.+.|.++ |++|.++.|+.-.
T Consensus 3 ~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~ 41 (234)
T TIGR02700 3 GWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGE 41 (234)
T ss_pred EEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHH
Confidence 3444566677 4789999999998 9999999987543
No 179
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=2e+02 Score=25.36 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=43.6
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc--cccccCCCCCCCeEEEEecC
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS--KSLHRDPSSSISIALETISD 74 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~--~~~~~~~~~~~~i~~~~l~~ 74 (224)
.++.|++++-..-.||--=|.-=|.-|+..|++|+++.-.... +.+- +.+ +|+++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~--~hp--rI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL--NHP--RIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh--cCC--ceEEEeCCC
Confidence 4567888888778899988999999999999999987644322 2222 234 499999873
No 180
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.92 E-value=68 Score=27.07 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHhcC------CCcEEEeCCCcccHHHHHHHcCCceEEec
Q 043256 100 QTLTELVERMN------DVDCIVFDSFLPWALDVAKKFGLTGAAFL 139 (224)
Q Consensus 100 ~~l~~ll~~~~------~~~~iI~D~~~~~~~~vA~~lgiP~v~f~ 139 (224)
..++.++.... .+.+||+|- .-+..+|+++|||++.+-
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 45666765421 567888974 346677999999999863
No 181
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=29.92 E-value=53 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
||+.| +...+.|...||++.++..+
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 77777888889999887654
No 182
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.91 E-value=77 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.4
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEE
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAA 137 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~ 137 (224)
++|++|.. .+...+|+++|||.+.
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEE
Confidence 68999986 6778999999999983
No 183
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.54 E-value=1.1e+02 Score=27.40 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=17.1
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEE
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAA 137 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~ 137 (224)
++|++|.+.. ...+|+++|||.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~ 395 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIR 395 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEE
Confidence 5777777653 56788888888764
No 184
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.40 E-value=61 Score=24.45 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCEEEEEecccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~~ 53 (224)
..+++.|.++||+|+.++-...
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHCCCEEEEEecCch
Confidence 3579999999999999886533
No 185
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.10 E-value=51 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCEEEEEeccccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~~~ 54 (224)
-.||++|++.||+|++.++....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 45789999999999999877554
No 186
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=28.93 E-value=57 Score=22.26 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCC-CCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhc
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYD-KGGSAQAESDQAYVDRFWQIGLQTLTELVERM 109 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 109 (224)
++++|++|.+.|++ ++.|....+.+.+ . +|....+..... ++.. . .+. .+.+++++.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~---~--Gi~~~~v~~~~~~~~~~-~-g~~-------------~i~~~i~~~ 59 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE---H--GIEVTEVVNKIGEGESP-D-GRV-------------QIMDLIKNG 59 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH---T--T--EEECCEEHSTG-GG-T-HCH-------------HHHHHHHTT
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH---c--CCCceeeeeecccCccC-C-chh-------------HHHHHHHcC
Confidence 57899999999976 5577766666653 1 266444421110 1000 0 011 345556655
Q ss_pred CCCcEEEeCCCcc---------cHHHHHHHcCCceE
Q 043256 110 NDVDCIVFDSFLP---------WALDVAKKFGLTGA 136 (224)
Q Consensus 110 ~~~~~iI~D~~~~---------~~~~vA~~lgiP~v 136 (224)
++|+||.-.--. .....|.+.+||.+
T Consensus 60 -~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 60 -KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 788887754321 11357778888875
No 187
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=28.43 E-value=1.2e+02 Score=24.60 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+..+||++ |-|.+- ..=++.|...|.+||++++...
T Consensus 24 ~~~~VLVV---GGG~VA--~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLII---GGGKAA--FIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCCEEEEE---CCCHHH--HHHHHHHHhCCCEEEEEcCCCC
Confidence 34577777 455554 4446778889999999987643
No 188
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.38 E-value=1.3e+02 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCccchHHHHHHHHHHHhCCCEEEEE
Q 043256 23 PAQGHINPLLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~~G~~VT~~ 48 (224)
++.|--.-.+.|++.|+++|.+|-++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 45677888899999999999999885
No 189
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.37 E-value=1.1e+02 Score=21.64 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCC-EEEEEecc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGI-KVTIVTTY 51 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~VT~~~t~ 51 (224)
.++.++.+......|.....++++.+.+++. ++.++...
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 4678888888878888888888888888876 66655543
No 190
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.35 E-value=1.2e+02 Score=27.22 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCc--cchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 13 KLANCLVLSYPAQ--GHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 13 ~~~hvl~~p~p~~--GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
..++|++++-|+- |--+- .||+|+..|+.++++...
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 3578999998876 33322 899999999998887764
No 191
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=28.30 E-value=63 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEecc
Q 043256 32 LLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~ 51 (224)
.++|++|++||++|..+.-.
T Consensus 20 ~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 20 AELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCc
Confidence 67899999999999887653
No 192
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=28.18 E-value=63 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 28 INPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 28 ~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
+.||+.+++.| +.|++||+...+-
T Consensus 52 ~vpm~kiadfl-kAGC~VtIl~AD~ 75 (360)
T KOG2144|consen 52 FVPMMKIADFL-KAGCEVTILFADL 75 (360)
T ss_pred eeehhHHHHHH-hcCCeEEEEehHH
Confidence 56799998766 7799999998873
No 193
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=28.16 E-value=76 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHhcC-CCcEEEeCCCcc-------cHHHHHHHcCCceEEe
Q 043256 100 QTLTELVERMN-DVDCIVFDSFLP-------WALDVAKKFGLTGAAF 138 (224)
Q Consensus 100 ~~l~~ll~~~~-~~~~iI~D~~~~-------~~~~vA~~lgiP~v~f 138 (224)
+.+.++++.+. ++|+|++|.... .|..++-.+++|++..
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 44556667765 789999998532 2445666677888763
No 194
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=28.07 E-value=71 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
||+.|++ ..+.|...|+++.++..+..
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D~~ 43 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGDAT 43 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECCCe
Confidence 9999986 67777778999998887633
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.96 E-value=1.2e+02 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=34.7
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
-|+++-.+|.|=..-...||..|..+|.+|.+++++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 456888899999999999999999999999999998655
No 196
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=27.95 E-value=37 Score=23.64 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=12.5
Q ss_pred ccCCCEEEEcChhhhh
Q 043256 204 IDKADWILCNTFYELE 219 (224)
Q Consensus 204 ~~~a~~ilvNTf~eLE 219 (224)
..+||-+++|||-=.|
T Consensus 34 ~e~AD~iiiNTC~V~~ 49 (98)
T PF00919_consen 34 PEEADVIIINTCTVRE 49 (98)
T ss_pred cccCCEEEEEcCCCCc
Confidence 4689999999996443
No 197
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.83 E-value=1.2e+02 Score=23.87 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHhcC-CCcEEEeCCCcc-cHHHHHHHcCCceEEechhhHHHH
Q 043256 101 TLTELVERMN-DVDCIVFDSFLP-WALDVAKKFGLTGAAFLTQSCAVA 146 (224)
Q Consensus 101 ~l~~ll~~~~-~~~~iI~D~~~~-~~~~vA~~lgiP~v~f~t~~a~~~ 146 (224)
.+++++++.. +..++|--.+-+ |+..+|+++|+|.+.+.++-....
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYE 95 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHH
Confidence 4456666653 223566666554 677899999999999887654443
No 198
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.81 E-value=74 Score=25.98 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 28 INPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 28 ~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+-+++++.+.|.++|+.|.++|.....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 347899999999999999999987543
No 199
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.68 E-value=1.4e+02 Score=21.23 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.9
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
...|+++.+...- ...++.++.|.+.|.+++++....
T Consensus 9 g~di~iia~G~~~--~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 9 GADITIIAYGSMV--EEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSEEEEEETTHH--HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEeehHHH--HHHHHHHHHHHHcCCceeEEeeEE
Confidence 3567788765553 457889999999999999887653
No 200
>PLN02939 transferase, transferring glycosyl groups
Probab=27.67 E-value=1.4e+02 Score=29.91 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCceEEEE-----eCCCccch-HHHHHHHHHHHhCCCEEEEEeccc
Q 043256 12 SKLANCLVL-----SYPAQGHI-NPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 12 ~~~~hvl~~-----p~p~~GH~-~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
++..||+++ |+.-.|-+ .-.-.|.+.|+.+||+|.++++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 346788865 55555666 456789999999999999999854
No 201
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=27.52 E-value=86 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=28.7
Q ss_pred eEEEEeCCCccch-HHHHHHHHHHHhCCCEEEEEe
Q 043256 16 NCLVLSYPAQGHI-NPLLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 16 hvl~~p~p~~GH~-~P~l~La~~La~~G~~VT~~~ 49 (224)
=+++-|.|+.=|+ -|.-+++..|.+.|.++..+.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3558899999999 699999999999998866554
No 202
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.31 E-value=1.1e+02 Score=25.70 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHHHhcC------CCcEEEeCCC---cccHHHHHHHcCCceEEech
Q 043256 100 QTLTELVERMN------DVDCIVFDSF---LPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 100 ~~l~~ll~~~~------~~~~iI~D~~---~~~~~~vA~~lgiP~v~f~t 140 (224)
..+++++.+.. .+.+||++-- ..-....|+++|||++.+..
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 45666666532 4678898862 22456899999999986644
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.30 E-value=92 Score=24.06 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=34.5
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccccccc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSLH 58 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~~ 58 (224)
...++++--+|.|=-.=...+++++..+|+.|-|++.......+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457889999999877778899999999999999999876655544
No 204
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.27 E-value=92 Score=22.91 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCC-EEEEEec
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGI-KVTIVTT 50 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~VT~~~t 50 (224)
+..++++.++....+|.--+-.+.++|.++|. .+.++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 34688999999999999999999999999887 5666554
No 205
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.27 E-value=59 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=22.7
Q ss_pred EeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 20 LSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 20 ~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
.-+||+|+++=-.+|++++.+.|. +|+-+
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 346899999999999999998775 45544
No 206
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.18 E-value=95 Score=26.42 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=57.6
Q ss_pred ceEE-EEeCCCccc-hHHHHHHHHHHHhCCCEEEEEecccccccccc-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHH
Q 043256 15 ANCL-VLSYPAQGH-INPLLLFSKRLERKGIKVTIVTTYFISKSLHR-DPSSSISIALETISDGYDKGGSAQAESDQAYV 91 (224)
Q Consensus 15 ~hvl-~~p~p~~GH-~~P~l~La~~La~~G~~VT~~~t~~~~~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (224)
++|+ +++....|- -.-++.|++.|..+|+++++++..... .+.. .... ++.++.++.. + . ..+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~--~i~~~~~~~~--~-~----~~~~--- 68 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQRP--DVAFYALHKQ--P-G----KDVA--- 68 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHHhc--CceEEEeCCC--C-C----CChH---
Confidence 3555 566666544 488999999999999999888753221 1111 0011 3677666421 1 1 1111
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEeCCCcc-cHHHHHHHcCCceEE
Q 043256 92 DRFWQIGLQTLTELVERMNDVDCIVFDSFLP-WALDVAKKFGLTGAA 137 (224)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~-~~~~vA~~lgiP~v~ 137 (224)
.+ ..+..++++. ++|+|-+-.... ++..++...|+|..+
T Consensus 69 -~~-----~~l~~~l~~~-~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 69 -VY-----PQLYRLLRQL-RPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred -HH-----HHHHHHHHHh-CCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 11 1234455555 789887644332 334566778888643
No 207
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.05 E-value=1.7e+02 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=19.7
Q ss_pred CccchHHHHHHHHHHHhCCCEEEEE
Q 043256 24 AQGHINPLLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 24 ~~GH~~P~l~La~~La~~G~~VT~~ 48 (224)
..|.-.-+..+++.|+++|+.|..+
T Consensus 8 ~~~~~~~~~~~~~~l~~~G~~v~~~ 32 (145)
T PF12695_consen 8 WGGSRRDYQPLAEALAEQGYAVVAF 32 (145)
T ss_dssp TTTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3345666889999999999987766
No 208
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.92 E-value=1.1e+02 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 043256 29 NPLLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~ 48 (224)
.-+-+|-+.|..-|.+++++
T Consensus 181 ~d~~elk~lL~~~Gl~~~~l 200 (432)
T TIGR01285 181 GDIEELRRMVEAFGLKPIIL 200 (432)
T ss_pred cCHHHHHHHHHHcCCceEEe
Confidence 35677778888889998765
No 209
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=26.92 E-value=75 Score=28.34 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=24.7
Q ss_pred EEeCCC---ccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 19 VLSYPA---QGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 19 ~~p~p~---~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+=|... -||+.|++. .+.|...||++.++..+..
T Consensus 40 ~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 40 FDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGGFT 76 (410)
T ss_pred ccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEcccc
Confidence 556542 299999666 4578899999998886533
No 210
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=26.68 E-value=35 Score=22.28 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCEEEEEecc
Q 043256 31 LLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~ 51 (224)
=-+|...|..+|+.||=.|..
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiS 42 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATIS 42 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHH
Confidence 357899999999998865544
No 211
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.49 E-value=1.7e+02 Score=18.74 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.1
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEe
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~ 49 (224)
+++....|.|=-.-...|++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344555677778888999999999999998766
No 212
>PRK13604 luxD acyl transferase; Provisional
Probab=26.47 E-value=1.6e+02 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=23.7
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEE
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~ 48 (224)
..+++.....++-.-+..+|+.|+++|+.|..+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344554444466666999999999999987644
No 213
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=26.28 E-value=1.4e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=24.4
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
++.+|++.- +.|.+ =.+|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVtG--gtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICITG--AGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEEC--CccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 345788774 44544 24679999999999998864
No 214
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.15 E-value=98 Score=25.97 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=37.3
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhC--CCEEEEEeccccccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERK--GIKVTIVTTYFISKSLH 58 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~--G~~VT~~~t~~~~~~~~ 58 (224)
+|+++-+.+-|-+.-...+.+.|.++ +.+||+++.+.+.+-++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58889988999999999999999996 89999999987765554
No 215
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.06 E-value=1e+02 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCcEEEeCCCc--ccHHHHHHHcCCceEEechhh
Q 043256 101 TLTELVERMNDVDCIVFDSFL--PWALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D~~~--~~~~~vA~~lgiP~v~f~t~~ 142 (224)
.++.+++ + +||+||..... .....--.+.|||++.+....
T Consensus 52 ~~E~i~~-l-~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAILA-L-KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHHH-T---SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHHh-C-CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 4455444 3 79999987776 344566668899999998876
No 216
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=25.96 E-value=73 Score=23.35 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCEEEEEeccc
Q 043256 33 LFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 33 ~La~~La~~G~~VT~~~t~~ 52 (224)
-+|.+|++.|++|+++....
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 46889999999999999876
No 217
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.89 E-value=1.9e+02 Score=25.98 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCcEEEeCCCccc------H----HHHHHHcCCceEEec
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPW------A----LDVAKKFGLTGAAFL 139 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~------~----~~vA~~lgiP~v~f~ 139 (224)
..+.++++.. ++|++|+-..+.. + ..|.+++|||.+.-.
T Consensus 66 ~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 66 AKVLEMIKGA-NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4555666766 8999999987653 1 235667999998744
No 218
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.82 E-value=1.9e+02 Score=25.94 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCcEEEeCCCccc------H----HHHHHHcCCceEEec
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPW------A----LDVAKKFGLTGAAFL 139 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~------~----~~vA~~lgiP~v~f~ 139 (224)
..+.++++.. ++|++|+-..+.. + ..|.+++|||.+.-.
T Consensus 66 ~~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 66 ARVLEMLKDK-EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4555666666 8999999987653 1 235667999998744
No 219
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=25.77 E-value=66 Score=24.17 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCEEEEEeccc
Q 043256 33 LFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 33 ~La~~La~~G~~VT~~~t~~ 52 (224)
.+|..|+++||+|++...+.
T Consensus 13 AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 13 ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHcCCEEEEEeccH
Confidence 67999999999999999874
No 220
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.76 E-value=68 Score=29.26 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=30.1
Q ss_pred ceEEEEeCCCccchHHH------------HHHHHHHHhCCCEEEEEeccc
Q 043256 15 ANCLVLSYPAQGHINPL------------LLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~------------l~La~~La~~G~~VT~~~t~~ 52 (224)
.+|++..-|..--+.|. ..||+.+..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 47777777777777776 467899999999999998764
No 221
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=25.57 E-value=1.6e+02 Score=23.88 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccccCCCCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 6 KKASASSKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 6 ~m~~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
||.....-+.+.+++.-.+ |.+ =..++++|+++|++|+++..
T Consensus 1 ~~~~~~~~~~k~vlVtGas-~gi--G~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 1 MMPNLFSLKGKVAVITGGG-GVL--GGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCCceeccCCCEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeC
Confidence 3444322223455554333 222 27889999999999887654
No 222
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=25.54 E-value=1.9e+02 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=22.4
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
..+|+++-- .|.+ =..++++|+++|++|+.++-
T Consensus 17 ~~~ilItGa--sG~i--G~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGA--TGRT--GKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECC--CcHH--HHHHHHHHHhCCCEEEEEec
Confidence 356777763 3322 24678889999999987653
No 223
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.43 E-value=2.2e+02 Score=22.37 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=28.6
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
|+++..++.-|---+.+++++|.+.|.+|.++.-.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 66888887877666778999999999998888754
No 224
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.36 E-value=1.3e+02 Score=22.79 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCcEEEeCCCccc--HHHHHHHcCCceEEec
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPW--ALDVAKKFGLTGAAFL 139 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~--~~~vA~~lgiP~v~f~ 139 (224)
..++.+++. +||+||......- ...--++.|||++.+.
T Consensus 60 ~n~E~ll~l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 455666553 7999988654322 3344467999998875
No 225
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.00 E-value=1.3e+02 Score=24.25 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCcEEEeCCCccc--HH-HHHHHcCCceEEechh
Q 043256 100 QTLTELVERMNDVDCIVFDSFLPW--AL-DVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~~~~--~~-~vA~~lgiP~v~f~t~ 141 (224)
..++.+++. +||+||....... .. .+-+..|+|++.+...
T Consensus 65 ~n~E~i~~l--~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 65 PNYEKIAAL--KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCHHHHHhc--CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 345555543 7999998755433 22 3444599999888754
No 226
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.99 E-value=1.5e+02 Score=24.22 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCcEEEe--CCCcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVF--DSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~--D~~~~~~~~vA~~lgiP~v~f 138 (224)
.+|+|+. .--.+++..+|..+|+|.++.
T Consensus 111 ~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 111 RVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 6788876 334567889999999998864
No 227
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.90 E-value=1.3e+02 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.5
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
++|+||.+.. ...+|+++|+|.+.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 6888888874 467888899998753
No 228
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=24.87 E-value=1.1e+02 Score=22.30 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=36.3
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+..+-+.|..|.+.+.|.-++-++|.+.-.++.++||....
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 56788999999999999999999999988999999987443
No 229
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.77 E-value=76 Score=25.65 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCEEEEEe
Q 043256 32 LLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~ 49 (224)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 567999999999999874
No 230
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=24.74 E-value=67 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccc
Q 043256 30 PLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 30 P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+.++|.+.+.++|..|.|+|...-.
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCeEEEEecCCch
Confidence 3889999999999999999976443
No 231
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=24.58 E-value=1.8e+02 Score=23.89 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 13 KLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 13 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
+++.|++++-.+.++. -.-.+++.|.++|++|..+--+..
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g~ 56 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKSA 56 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccCC
Confidence 4568999886554433 356778889889999877665543
No 232
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=24.57 E-value=2.3e+02 Score=24.43 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=32.5
Q ss_pred HHHHHHHhcC----CCcEEEe-----CCCcccH-HHHHHHcCCceEEechhhHHHHHHHHH
Q 043256 101 TLTELVERMN----DVDCIVF-----DSFLPWA-LDVAKKFGLTGAAFLTQSCAVAAIYHH 151 (224)
Q Consensus 101 ~l~~ll~~~~----~~~~iI~-----D~~~~~~-~~vA~~lgiP~v~f~t~~a~~~~~~~~ 151 (224)
..+++|++.. .+|+||+ |.+++.. ..|.++||+..+.-+-.+++|..+.+-
T Consensus 59 Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~ya 119 (323)
T COG0332 59 AARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYA 119 (323)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCCcceeechhhhHHHHHH
Confidence 3455666543 5899987 6666654 589999999985544445555444443
No 233
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.57 E-value=1.5e+02 Score=24.11 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCcEEEeCCCccc--HHHHHHHcCCceEEechh
Q 043256 111 DVDCIVFDSFLPW--ALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 111 ~~~~iI~D~~~~~--~~~vA~~lgiP~v~f~t~ 141 (224)
++.||+++....- +..+|++.|+|.+.+.+.
T Consensus 199 ~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 199 KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 6888988876654 357888899998877665
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=24.46 E-value=1.3e+02 Score=27.13 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.9
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhC-CCEEEEEecccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERK-GIKVTIVTTYFISK 55 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~-G~~VT~~~t~~~~~ 55 (224)
-|+++-.+|.|=..-...||..|+.+ |.+|.++..+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 45588888999999999999999998 99999999986553
No 235
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.33 E-value=3.1e+02 Score=23.09 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHhcCCCcEEEeCCCcccH-------HHHHHHcCCceEEechhhHHHHHHHHH
Q 043256 103 TELVERMNDVDCIVFDSFLPWA-------LDVAKKFGLTGAAFLTQSCAVAAIYHH 151 (224)
Q Consensus 103 ~~ll~~~~~~~~iI~D~~~~~~-------~~vA~~lgiP~v~f~t~~a~~~~~~~~ 151 (224)
.+.++.- .--++|+|.-++.. ..-|++.||+++.+-..||...++..+
T Consensus 71 i~~l~~g-~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 71 IPLLKKG-KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred HHHHhcC-CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 3344433 35689999887642 256778999999999999988887765
No 236
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.23 E-value=41 Score=22.20 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEec
Q 043256 29 NPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 29 ~P~l~La~~La~~G~~VT~~~t 50 (224)
+=|+.|..++.++|..|+|..-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4588999999999999998653
No 237
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=24.05 E-value=1.6e+02 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCEEEEEeccccc
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
-..|+++|..+||+|+..+.....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCc
Confidence 567899999999999987765543
No 238
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.03 E-value=1.2e+02 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHhcCCCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 104 ELVERMNDVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 104 ~ll~~~~~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
+++++. +||.+|.... ...+|+++|||...+
T Consensus 363 ~~i~~~-~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 363 EFVKRL-KPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHh-CCCEEEecCc---chhhhhhcCCCeEeC
Confidence 333333 6787777664 455778888887654
No 239
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.99 E-value=3.3e+02 Score=21.14 Aligned_cols=100 Identities=13% Similarity=0.239 Sum_probs=46.1
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhC--CCEEEEEeccccccc-cccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERK--GIKVTIVTTYFISKS-LHRDPSSSISIALETISDGYDKGGSAQAESDQAYVD 92 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~--G~~VT~~~t~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (224)
.++-+=..+.|=++-...|+++|.++ |++|.+-++...... ..+ ..+. .+....+|-+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~-~~~~-~v~~~~~P~D~---------------- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARK-LLPD-RVDVQYLPLDF---------------- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHG-G-GG-G-SEEE---SS----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHH-hCCC-CeEEEEeCccC----------------
Confidence 56666667789999999999999986 788776665333222 221 0011 13333344111
Q ss_pred HHHHHhHHHHHHHHHhcCCCcEEEeCCCcccH--HHHHHHcCCceEEech
Q 043256 93 RFWQIGLQTLTELVERMNDVDCIVFDSFLPWA--LDVAKKFGLTGAAFLT 140 (224)
Q Consensus 93 ~~~~~~~~~l~~ll~~~~~~~~iI~D~~~~~~--~~vA~~lgiP~v~f~t 140 (224)
...++.+++.+ +|+++|.=-.--|- ...|++.|||.+....
T Consensus 84 ------~~~~~rfl~~~-~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ------PWAVRRFLDHW-RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------HHHHHHHHHHH---SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------HHHHHHHHHHh-CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11234455666 56655443334454 5788899999998765
No 240
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=23.95 E-value=1.6e+02 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.1
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+.++-+.+.|=-.-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34677788888888899999999999999988654
No 241
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.90 E-value=1.6e+02 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCEEEEEeccccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~~~ 54 (224)
..|++.|..+|+ |++-++.+..
T Consensus 13 r~la~~L~~~g~-v~~sv~t~~g 34 (249)
T PF02571_consen 13 RKLAERLAEAGY-VIVSVATSYG 34 (249)
T ss_pred HHHHHHHHhcCC-EEEEEEhhhh
Confidence 468999999998 6554444343
No 242
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.89 E-value=72 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCEEEEEecccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~~ 53 (224)
..+|+.|.++||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 5789999999999998876543
No 243
>PRK14974 cell division protein FtsY; Provisional
Probab=23.73 E-value=1.9e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=34.4
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
.-|+++-.+|.|=..-...||..|..+|++|.+++++..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 456799999999999999999999999999999887744
No 244
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.65 E-value=1.6e+02 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.4
Q ss_pred HHHHHHHHhcC--CCcEEEeCCCcccHHHHHHHcCCceEEechh
Q 043256 100 QTLTELVERMN--DVDCIVFDSFLPWALDVAKKFGLTGAAFLTQ 141 (224)
Q Consensus 100 ~~l~~ll~~~~--~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t~ 141 (224)
+..+..++.+. .+++||.|.. +...|+++|++.+...+.
T Consensus 132 ~e~~~~~~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 44455555443 7999999985 578999999999988764
No 245
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=23.47 E-value=2.8e+02 Score=24.43 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred CCcEE-EeCCC--cccHHHHHHHcCCc--eEEech
Q 043256 111 DVDCI-VFDSF--LPWALDVAKKFGLT--GAAFLT 140 (224)
Q Consensus 111 ~~~~i-I~D~~--~~~~~~vA~~lgiP--~v~f~t 140 (224)
+||++ ..|+- .-....-+++.|+| .+.|.+
T Consensus 82 ~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~ 116 (373)
T PF02684_consen 82 KPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS 116 (373)
T ss_pred CCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC
Confidence 78875 55873 33445777889998 555444
No 246
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=23.32 E-value=82 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.604 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCEEEEEec
Q 043256 32 LLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t 50 (224)
-..|++||+||++|.++.-
T Consensus 63 KayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 3679999999999777764
No 247
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=23.25 E-value=2.7e+02 Score=21.62 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred eEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhc----C--CCcEEEeCCCcccH---HHHHHHc---CCc
Q 043256 67 IALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTELVERM----N--DVDCIVFDSFLPWA---LDVAKKF---GLT 134 (224)
Q Consensus 67 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~--~~~~iI~D~~~~~~---~~vA~~l---giP 134 (224)
|-+.++.||- ..+ +.+.++.+...+.+.+.+++++. . ++.|||+|....-. ...|++| |+-
T Consensus 6 IGIrp~iDGR-~~g------VresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~ 78 (171)
T PF07881_consen 6 IGIRPTIDGR-RGG------VRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVG 78 (171)
T ss_dssp EEEEEB-----TTT------HHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEE
T ss_pred EEEEEeecCC-chh------HHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCC
Confidence 5555555553 222 33334444444556666666654 1 78999999987643 4566666 444
Q ss_pred eEEech
Q 043256 135 GAAFLT 140 (224)
Q Consensus 135 ~v~f~t 140 (224)
..++.+
T Consensus 79 ~titvt 84 (171)
T PF07881_consen 79 VTITVT 84 (171)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444433
No 248
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.11 E-value=88 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=25.5
Q ss_pred ceEEEEeCCCccch-HHHHHHHHHHHhCCCEEEEEec
Q 043256 15 ANCLVLSYPAQGHI-NPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 15 ~hvl~~p~p~~GH~-~P~l~La~~La~~G~~VT~~~t 50 (224)
.+|+++.-+|- - -=-+-+||.|.++|++|+++..
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEEc
Confidence 47888885543 2 1246789999999999999873
No 249
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.06 E-value=1.4e+02 Score=26.54 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=23.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+|+++ |-|+ .-+ .+|+.|+++|++||++...
T Consensus 7 ~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 7 KVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred EEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCC
Confidence 45555 5666 444 9999999999999988664
No 250
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.98 E-value=1.4e+02 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=17.5
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~f 138 (224)
+||++|.. .+...+|+++|||.+.+
T Consensus 395 ~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 57777754 44567788888887764
No 251
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.98 E-value=86 Score=26.56 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCEEEEEecccc
Q 043256 32 LLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t~~~ 53 (224)
.+|..+|...||+||+++-...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 3577888889999999986543
No 252
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=22.94 E-value=1.9e+02 Score=23.98 Aligned_cols=29 Identities=28% Similarity=0.230 Sum_probs=16.7
Q ss_pred CCcEEEeCCCccc--HHHHHHHcCCceEEec
Q 043256 111 DVDCIVFDSFLPW--ALDVAKKFGLTGAAFL 139 (224)
Q Consensus 111 ~~~~iI~D~~~~~--~~~vA~~lgiP~v~f~ 139 (224)
++.||+++....- +..+|++.|++.+.+.
T Consensus 220 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 220 DVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred CCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 5666666665542 3456666666665443
No 253
>PRK04148 hypothetical protein; Provisional
Probab=22.85 E-value=92 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=22.2
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
..+|+.+-.. .| ..+|+.|++.|++|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 3567777654 44 34588999999999876543
No 254
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.61 E-value=72 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCEEEEEecccccccc
Q 043256 33 LFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 33 ~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
-+|..|++.||+||++......+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 3688999999999999875333333
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=22.60 E-value=95 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHhcC--CCcEEEeCCCccc
Q 043256 103 TELVERMN--DVDCIVFDSFLPW 123 (224)
Q Consensus 103 ~~ll~~~~--~~~~iI~D~~~~~ 123 (224)
+++.+.+. ++||||+||.-..
T Consensus 126 ~ki~e~lp~r~VdvVlSDMapna 148 (232)
T KOG4589|consen 126 RKIFEALPNRPVDVVLSDMAPNA 148 (232)
T ss_pred HHHHHhCCCCcccEEEeccCCCC
Confidence 33444443 7999999997643
No 256
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=22.60 E-value=1.9e+02 Score=22.79 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.1
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+.+.-.|+.|.-.=.++++...+.+|..|.|+.+.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45888899999999999999999999999999988
No 257
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.52 E-value=89 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=21.4
Q ss_pred EEEEeCCCccchHHHHHHHHHHHhCCCEEEEE
Q 043256 17 CLVLSYPAQGHINPLLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 17 vl~~p~p~~GH~~P~l~La~~La~~G~~VT~~ 48 (224)
=+++|.-|.||- +..|+++||+|+=+
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGv 65 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGV 65 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEE
Confidence 467799999987 66788999998865
No 258
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.45 E-value=1.8e+02 Score=26.05 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCEEEEE
Q 043256 31 LLLFSKRLERKGIKVTIV 48 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~ 48 (224)
+-+|-+.|..-|.+|+++
T Consensus 176 ~~el~~lL~~~Gl~~~~~ 193 (435)
T cd01974 176 MREIKRLLELMGVDYTIL 193 (435)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 778888888889998764
No 259
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.42 E-value=99 Score=23.40 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
.+|+++- -|.+ -...++.|.+.|++||++..
T Consensus 14 ~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcC
Confidence 4566663 3433 37788999999999999953
No 260
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.30 E-value=2.2e+02 Score=20.04 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 22 YPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 22 ~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
+--.|.---+++.++.+.++|..|..+|.....
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345678888999999999999998888876443
No 261
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.29 E-value=1.2e+02 Score=23.24 Aligned_cols=33 Identities=6% Similarity=0.195 Sum_probs=25.5
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
-+++++. +-|.+.|+ +++|.++|.+|+.+..+.
T Consensus 107 D~~vLvS--gD~DF~~L---v~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 107 DAVALVT--RDADFLPV---INKAKENGKETIVIGAEP 139 (160)
T ss_pred CEEEEEe--ccHhHHHH---HHHHHHCCCEEEEEeCCC
Confidence 4677777 77887765 667778999999999754
No 262
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=22.17 E-value=81 Score=26.10 Aligned_cols=29 Identities=7% Similarity=-0.172 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
|--.-+.+|++.|+++|+.|++++.....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 44 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGAP 44 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 33455799999999999999999876443
No 263
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.14 E-value=2.2e+02 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=22.5
Q ss_pred CceEEEEeCCCccchHHHHHHHHHHHhCCCEEEE
Q 043256 14 LANCLVLSYPAQGHINPLLLFSKRLERKGIKVTI 47 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~ 47 (224)
.+-|++++ -..|--.-+..+|++|+++|+.|.+
T Consensus 14 ~~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEe
Confidence 34455554 5668888888999999999976553
No 264
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.09 E-value=1.9e+02 Score=18.47 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=26.3
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
.|+++++. ..+..-.+++++.|.+.|..|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46666644 57788899999999999998876444
No 265
>COG3150 Predicted esterase [General function prediction only]
Probab=22.05 E-value=1.4e+02 Score=23.35 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCcEEEeCCC--cccHHHHHHHcCCceEEechhhHHHHHH
Q 043256 100 QTLTELVERMNDVDCIVFDSF--LPWALDVAKKFGLTGAAFLTQSCAVAAI 148 (224)
Q Consensus 100 ~~l~~ll~~~~~~~~iI~D~~--~~~~~~vA~~lgiP~v~f~t~~a~~~~~ 148 (224)
+.++.++++....+-.|+..- -.|+-.++..+||+.|+|.+.-...-.+
T Consensus 47 ~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Girav~~NPav~P~e~l 97 (191)
T COG3150 47 KELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAVRPYELL 97 (191)
T ss_pred HHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCChhhhcCCCcCchhhh
Confidence 355666666642233444443 3599999999999999998865543333
No 266
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=22.01 E-value=3e+02 Score=21.35 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCcEEEeCC--CcccHHHHHHHcCCceEEe
Q 043256 111 DVDCIVFDS--FLPWALDVAKKFGLTGAAF 138 (224)
Q Consensus 111 ~~~~iI~D~--~~~~~~~vA~~lgiP~v~f 138 (224)
++|.|++=- -+..+..+|.++|+|.+..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 688887733 4456789999999999874
No 267
>PLN02778 3,5-epimerase/4-reductase
Probab=22.00 E-value=1.6e+02 Score=24.67 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEe
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~ 49 (224)
..+.+|++.---|. += .+|+++|.++|++|++..
T Consensus 7 ~~~~kiLVtG~tGf--iG--~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 7 SATLKFLIYGKTGW--IG--GLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCeEEEECCCCH--HH--HHHHHHHHhCCCEEEEec
Confidence 34567888774444 32 256889999999998643
No 268
>PLN00016 RNA-binding protein; Provisional
Probab=22.00 E-value=85 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred ceEEEEeC--CCccchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 15 ANCLVLSY--PAQGHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 15 ~hvl~~p~--p~~GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
.+|+++.. .+.|.+- .+|++.|+++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 46777611 2334442 467899999999999888643
No 269
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.98 E-value=3.7e+02 Score=23.33 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcC----CCcEEEe-CCC--cccHHHHHHHcCCceEEechhh
Q 043256 99 LQTLTELVERMN----DVDCIVF-DSF--LPWALDVAKKFGLTGAAFLTQS 142 (224)
Q Consensus 99 ~~~l~~ll~~~~----~~~~iI~-D~~--~~~~~~vA~~lgiP~v~f~t~~ 142 (224)
.+.++..|++-. .+|.++. |.. ...+..+++++|||.+-....+
T Consensus 59 ~EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gAC 109 (334)
T PRK12404 59 EEACSRAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGAC 109 (334)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCCCccceeecC
Confidence 344555665432 5788777 655 2334589999999986654433
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.93 E-value=1.2e+02 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.5
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
..+++.--+|.|=-.=+..+|+.|+.+|..|+|++.+.....+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 4688888888888888889999999999999999887554443
No 271
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.93 E-value=1.2e+02 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=15.5
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceEE
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGAA 137 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v~ 137 (224)
++|++|... +...+|+++|||.+-
T Consensus 387 ~pdllig~s---~~~~~A~~lgip~~~ 410 (443)
T TIGR01862 387 KPDIIFSGI---KEKFVAQKLGVPYRQ 410 (443)
T ss_pred CCCEEEEcC---cchhhhhhcCCCeEe
Confidence 566666443 456677777777764
No 272
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=21.91 E-value=1.4e+02 Score=23.96 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCCceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecc
Q 043256 12 SKLANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTY 51 (224)
Q Consensus 12 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~ 51 (224)
+.+++++.+.+....|+..+.++.++|.+.|.++.++...
T Consensus 137 ~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 137 EHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred HcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3478999999999999999999999999998888876654
No 273
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=21.82 E-value=3.4e+02 Score=23.25 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCcEEEeCCCcc--cHHHHHHHcCCceEEechhhHH
Q 043256 101 TLTELVERMNDVDCIVFDSFLP--WALDVAKKFGLTGAAFLTQSCA 144 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D~~~~--~~~~vA~~lgiP~v~f~t~~a~ 144 (224)
.++++++.. .|.+||++-+.. +...+|++.++|.+...-.+..
T Consensus 74 ~~~~~~~~~-~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 74 IIHNLLTLN-PPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHhCCC-CCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 444554443 677788877654 5578999999998876554443
No 274
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=21.71 E-value=1.8e+02 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=27.0
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCE
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIK 44 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~ 44 (224)
+=||+.-+|..|--.-..+|.+.|.++|++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 347889999999999999999999999975
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.62 E-value=2.1e+02 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
..|+++-..|.|=..-+..||..|..+|.+|.+++++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888899999999999999999999999999987554
No 276
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=21.61 E-value=98 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 26 GHINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 26 GH~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
||..+.+...+.|.+.|+++.+...+.
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999998888889988899999988764
No 277
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=21.40 E-value=37 Score=19.53 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCcEEEeCCCcccH-HHHHHHcCCceE
Q 043256 101 TLTELVERMNDVDCIVFDSFLPWA-LDVAKKFGLTGA 136 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D~~~~~~-~~vA~~lgiP~v 136 (224)
.++-++.+. +-||.++|.-..+- +++|.++||...
T Consensus 4 ~lelll~~H-~~dC~~C~~~G~CeLQ~~~~~~gv~~~ 39 (41)
T PF10588_consen 4 VLELLLANH-PLDCPTCDKNGNCELQDLAYEYGVDEQ 39 (41)
T ss_dssp HHHHHHTT-----TTT-TTGGG-HHHHHHHHH-S---
T ss_pred HHHHHHhCC-CCcCcCCCCCCCCHHHHHHHHhCCCcC
Confidence 345566666 78999999766654 689999998754
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.30 E-value=3.8e+02 Score=20.44 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=54.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEE---ecccccccccc-CCCCCCCeEEEEecCCCCCCCCCCcCCHHHHH
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIV---TTYFISKSLHR-DPSSSISIALETISDGYDKGGSAQAESDQAYV 91 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~---~t~~~~~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (224)
-|.++.-+|.|=....+.+|-+.+.+|++|.|+ -.......... ...+ ++.+.....+.. ... .+..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~--~v~~~~~g~~~~---~~~-~~~~~~~ 77 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLP--NIEIHRMGRGFF---WTT-ENDEEDI 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCC--CcEEEECCCCCc---cCC-CChHHHH
Confidence 466788889999999999999999999999984 33211111111 0122 377776653321 101 1121112
Q ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEeCCCc
Q 043256 92 DRFWQIGLQTLTELVERMNDVDCIVFDSFL 121 (224)
Q Consensus 92 ~~~~~~~~~~l~~ll~~~~~~~~iI~D~~~ 121 (224)
..... .-...++.++.- .+|+||.|-+.
T Consensus 78 ~~a~~-~~~~a~~~~~~~-~~dLlVLDEi~ 105 (159)
T cd00561 78 AAAAE-GWAFAKEAIASG-EYDLVILDEIN 105 (159)
T ss_pred HHHHH-HHHHHHHHHhcC-CCCEEEEechH
Confidence 22211 122334445543 79999999864
No 279
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.28 E-value=1.3e+02 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEecccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFI 53 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~ 53 (224)
||++. .-|.+...-..+|.+.|.++|++|.++.|+.-
T Consensus 5 ~Illg-iTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 5 KILLG-VTGGIAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 55433 44666677799999999999999999988743
No 280
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.23 E-value=2.2e+02 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=27.1
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEec
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t 50 (224)
.|.++-+-..|=-.=...|.+.|.++|++|.++--
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 46678888888888999999999999999885543
No 281
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=21.07 E-value=1.2e+02 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 27 HINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 27 H~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.+-++++|.+.|.++|++|.++|...-.
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~ 173 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKD 173 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3558999999999999999999987543
No 282
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.03 E-value=1.1e+02 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCEEEEEec
Q 043256 32 LLFSKRLERKGIKVTIVTT 50 (224)
Q Consensus 32 l~La~~La~~G~~VT~~~t 50 (224)
..+|+.|+++||+|++...
T Consensus 14 ~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp HHHHHHHHHTTTEEEEEES
T ss_pred HHHHHHHHhcCCeEEeecc
Confidence 4679999999999998763
No 283
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=20.96 E-value=1.1e+02 Score=25.40 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.5
Q ss_pred ceEEEEeCCCccchHHHHHHHHHHHhCCCEEEEEeccccc
Q 043256 15 ANCLVLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 15 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~ 54 (224)
.+++++. +-.=+.|++.+++.|+++|.+|+++....+.
T Consensus 99 ~~~llIa--GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVG--GGVGIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEe--CcCcHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 3677766 3334889999999999999999988765443
No 284
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.85 E-value=1.5e+02 Score=24.20 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCccchHHHHHHHHHHHhCCCEEEEEecccccccc
Q 043256 23 PAQGHINPLLLFSKRLERKGIKVTIVTTYFISKSL 57 (224)
Q Consensus 23 p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~~~ 57 (224)
.|.|=-.-.+-||..|+++|-+|+++=++.+.+..
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 36688899999999999999999999999887543
No 285
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.66 E-value=1.2e+02 Score=25.44 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC------CCcEEEeCCCcccHHHHHHHcCCceEEech
Q 043256 100 QTLTELVERMN------DVDCIVFDSFLPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 100 ~~l~~ll~~~~------~~~~iI~D~~~~~~~~vA~~lgiP~v~f~t 140 (224)
..|++++.... .+.+||+|-- -+...|+++|||++.+-.
T Consensus 96 ~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 96 HCLGDLLWRWYSGELDAEIALVISNHE--DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHHHHHhCCCEEEcCC
Confidence 45666666532 4678888863 344579999999998765
No 286
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=20.62 E-value=2.5e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=-0.051 Sum_probs=23.0
Q ss_pred CCcEEEeCC--CcccHHHHHHHcCCceEEech
Q 043256 111 DVDCIVFDS--FLPWALDVAKKFGLTGAAFLT 140 (224)
Q Consensus 111 ~~~~iI~D~--~~~~~~~vA~~lgiP~v~f~t 140 (224)
++|+|+.=- -++.+..+|.++|+|.+...-
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 689988632 345678899999999988654
No 287
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=20.60 E-value=1.8e+02 Score=26.81 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=22.2
Q ss_pred CceEEEEeCCCccchHH--HHHHHHHHHhCCCEEEEEe
Q 043256 14 LANCLVLSYPAQGHINP--LLLFSKRLERKGIKVTIVT 49 (224)
Q Consensus 14 ~~hvl~~p~p~~GH~~P--~l~La~~La~~G~~VT~~~ 49 (224)
+.+|-++| +.- ..| +.+|-+.|..-|.+++++.
T Consensus 220 ~~~VNii~--g~~-~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 220 NGKINIIP--GFE-TYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred CCeEEEEC--CCC-CCchhHHHHHHHHHHcCCCeEEcc
Confidence 34666776 331 114 7888888888899998754
No 288
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=20.55 E-value=1.2e+02 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHhCCCEEEEEeccc
Q 043256 27 HINPLLLFSKRLERKGIKVTIVTTYF 52 (224)
Q Consensus 27 H~~P~l~La~~La~~G~~VT~~~t~~ 52 (224)
|+..|.+++..|.++|++|++.....
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46689999999999999999998776
No 289
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=20.55 E-value=28 Score=20.68 Aligned_cols=10 Identities=50% Similarity=1.384 Sum_probs=7.8
Q ss_pred CCCccchHHH
Q 043256 22 YPAQGHINPL 31 (224)
Q Consensus 22 ~p~~GH~~P~ 31 (224)
|||-||+-|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 5799998774
No 290
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.54 E-value=1.5e+02 Score=24.88 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=36.8
Q ss_pred eEEEEeCCCccchHHHHHHHHHHHhC--CCEEEEEeccccccccc
Q 043256 16 NCLVLSYPAQGHINPLLLFSKRLERK--GIKVTIVTTYFISKSLH 58 (224)
Q Consensus 16 hvl~~p~p~~GH~~P~l~La~~La~~--G~~VT~~~t~~~~~~~~ 58 (224)
||+++-.-+-|-+.=...+.+.|.++ +.+||+++.+.+.+.+.
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 79999999999999999999999885 89999999887655443
No 291
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.45 E-value=2.8e+02 Score=19.22 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCcEEEeCCCcccHH--HHHHHcCCceE
Q 043256 101 TLTELVERMNDVDCIVFDSFLPWAL--DVAKKFGLTGA 136 (224)
Q Consensus 101 ~l~~ll~~~~~~~~iI~D~~~~~~~--~vA~~lgiP~v 136 (224)
.++++++.. .+|+||.|--.+..+ .+.+.+|++++
T Consensus 48 ei~~~~~~~-~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 48 EIKELIEEL-DADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHhhc-CCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 344455555 689999998777664 68888888765
No 292
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.31 E-value=98 Score=20.72 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccccCCCCCCCeEEEEecCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHHHhcC
Q 043256 31 LLLFSKRLERKGIKVTIVTTYFISKSLHRDPSSSISIALETISDGYDKGGSAQAESDQAYVDRFWQIGLQTLTELVERMN 110 (224)
Q Consensus 31 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 110 (224)
++++++.|.+.|++| +.|......+.. . ++...++-... .++. +.+.+++++-
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~---~--Gi~~~~~~~ki-~~~~------------------~~i~~~i~~g- 54 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE---A--GLPVKTLHPKV-HGGI------------------LAILDLIKNG- 54 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH---C--CCcceeccCCC-CCCC------------------HHHHHHhcCC-
Confidence 568999999999997 355555544543 1 24432211111 1110 1133444444
Q ss_pred CCcEEEeCCC---------cccHHHHHHHcCCceE
Q 043256 111 DVDCIVFDSF---------LPWALDVAKKFGLTGA 136 (224)
Q Consensus 111 ~~~~iI~D~~---------~~~~~~vA~~lgiP~v 136 (224)
++|+||.-.. ..+....|.+.|||.+
T Consensus 55 ~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 55 EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 7888887332 1234578889999976
No 293
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.25 E-value=2.1e+02 Score=19.41 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCcEE--EeCCCcc---cH-HHHHHHcCCceEEechhhHHHH
Q 043256 111 DVDCI--VFDSFLP---WA-LDVAKKFGLTGAAFLTQSCAVA 146 (224)
Q Consensus 111 ~~~~i--I~D~~~~---~~-~~vA~~lgiP~v~f~t~~a~~~ 146 (224)
+.|+| +.|.... |. ...|++.|+|.+..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 45766 5577643 43 4799999999999886666544
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.16 E-value=1.5e+02 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=15.0
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCceE
Q 043256 111 DVDCIVFDSFLPWALDVAKKFGLTGA 136 (224)
Q Consensus 111 ~~~~iI~D~~~~~~~~vA~~lgiP~v 136 (224)
+||++|.. .+...+|+++|||.+
T Consensus 356 ~pDl~ig~---s~~~~~a~~~gip~~ 378 (410)
T cd01968 356 KADLLVAG---GKERYLALKLGIPFC 378 (410)
T ss_pred CCCEEEEC---CcchhhHHhcCCCEE
Confidence 56777666 334567777777766
No 295
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=20.07 E-value=1e+02 Score=27.17 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=21.4
Q ss_pred cchHHHH---HHHHHHHhCCCEEEEEeccccc
Q 043256 26 GHINPLL---LFSKRLERKGIKVTIVTTYFIS 54 (224)
Q Consensus 26 GH~~P~l---~La~~La~~G~~VT~~~t~~~~ 54 (224)
||+.|++ -++|-+..+|++|-+++....+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDeh 48 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDEH 48 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecchh
Confidence 9999776 4677777899999999875444
No 296
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.06 E-value=2.8e+02 Score=23.21 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.6
Q ss_pred CceEE-EEeCCCccchHHHHHHHHHHHhCCCEEEEEecccccc
Q 043256 14 LANCL-VLSYPAQGHINPLLLFSKRLERKGIKVTIVTTYFISK 55 (224)
Q Consensus 14 ~~hvl-~~p~p~~GH~~P~l~La~~La~~G~~VT~~~t~~~~~ 55 (224)
+.|++ +--.||.|--.=.-.|++.|.++|++|-++..+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 34554 9999999999999999999999999999998875543
Done!