BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043258
         (454 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
           Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
           2.35 A R
          Length = 474

 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 238 NGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQ 289
           +GV Y +E        R+   R+F E+ RR+P APV+H          A +Q
Sbjct: 168 SGVSYXLEN-------RKXXXRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQ 212


>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
 pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
 pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
 pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
          Length = 311

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)

Query: 218 INSALRLENGKGLCILGDGDN--GVEYAVEEFLPRAV---------YRQCCHRIFN-EMV 265
           ++ AL LEN KGL  +  G++  GV YA +    +A+         Y++ C R +  E+V
Sbjct: 56  LSKALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115

Query: 266 RRFPTA 271
            R  TA
Sbjct: 116 DRGVTA 121


>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
          Length = 514

 Score = 28.5 bits (62), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 397 GLWQISGIPC-AHACR-GIKYMRRKIEDYVDS-MMSVQNYMSTYAPGMMQLPQEYAWKWD 453
           GLW    I C A  CR G+ ++ + +   V S   S  NY +  + G+   PQ YAW  +
Sbjct: 194 GLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSE 253

Query: 454 A 454
           A
Sbjct: 254 A 254


>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
 pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
           Tetrasaccharide
          Length = 514

 Score = 28.1 bits (61), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 397 GLWQISGIPC-AHACR-GIKYMRRKIEDYVDS-MMSVQNYMSTYAPGMMQLPQEYAWKWD 453
           GLW    I C A  CR G+ ++ + +   V S   S  NY +  + G+   PQ YAW  +
Sbjct: 194 GLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSE 253

Query: 454 A 454
           A
Sbjct: 254 A 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,608,310
Number of Sequences: 62578
Number of extensions: 535077
Number of successful extensions: 1280
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 7
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)