BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043258
         (454 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
          Length = 1387

 Score = 33.5 bits (75), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 188  GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYA 243
            GL  +  +LPVAF ++Q      +V  LK +        G GLCI+GD   G+ +A
Sbjct: 1133 GLKEDGSLLPVAFMDMQC-----YVKVLKELQ-------GTGLCIMGDALKGIWFA 1176


>sp|A1C3U1|CFT1_ASPCL Protein cft1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
            DSM 816 / NCTC 3887 / NRRL 1) GN=cft1 PE=3 SV=1
          Length = 1401

 Score = 33.5 bits (75), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 188  GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYA 243
            GL  +  +LPVAF +VQ      +V  LK +        G G+CI+GD   G+ +A
Sbjct: 1146 GLKEDGSLLPVAFMDVQC-----YVNVLKELK-------GTGMCIVGDAFKGIWFA 1189


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.136    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,903,019
Number of Sequences: 539616
Number of extensions: 6898362
Number of successful extensions: 18299
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18295
Number of HSP's gapped (non-prelim): 4
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)