BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043261
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 159/237 (67%), Gaps = 21/237 (8%)
Query: 1 MEFEEHEEQEVEEMGA---AEYESMTNASKATGPTAGGEGASAAARKSIRYRECLKNHAV 57
M FE+ EE ++E G Y+S++ + G + K IRYRECLKNHAV
Sbjct: 1 MNFEDQEE-DMEMSGVNPPCGYDSLSGEGATSSGGGGVGRSKGVGAK-IRYRECLKNHAV 58
Query: 58 SIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQQQFSPYY 117
+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+ A+ + YY
Sbjct: 59 NIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAH-----RVPTYY 113
Query: 118 RGPPPP-APAGYLHLTAAQPRPLALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTK 176
PP P P GYLHLT+ S +EED SNPSSSGG T KR RTK
Sbjct: 114 NRPPQPHQPPGYLHLTSPAA------PYRPPAASGDEEDTSNPSSSGG----TTKRFRTK 163
Query: 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233
FTAEQKEKML FAE+LGWRIQKHD+ +VEQFCAETGV+R VLK+WMHNNK++LGKKP
Sbjct: 164 FTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 197 bits (500), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 125/197 (63%), Gaps = 24/197 (12%)
Query: 46 IRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLA 105
R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE L
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKE------LP 126
Query: 106 YHHQQQQFSP-------YYRGPPPPAPAGYLHLTAAQPRPLALPSSSAGGYSREEEDVSN 158
Y H +YR P AP Y +P P P + E +
Sbjct: 127 YFHHAPPQHQPPPPPPGFYRLP---APVSY------RPPPSQAPPLQLALPPPQRERSED 177
Query: 159 P--SSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRH 216
P +SS GG +KRHRTKFTAEQKE+ML AE++GWRIQ+ D+ +++FC ETGV R
Sbjct: 178 PMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQ 237
Query: 217 VLKVWMHNNKHTLGKKP 233
VLKVW+HNNKHTLGK P
Sbjct: 238 VLKVWLHNNKHTLGKSP 254
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 115/192 (59%), Gaps = 13/192 (6%)
Query: 46 IRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLE--SLKCAACNCHRNFHRKETDGASP 103
+ Y+ECLKNHA ++GGHA+DGCGEFM + + + SL+CAAC CHRNFHR+ D +
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRR--DPSEN 86
Query: 104 LAYHHQQQQFSPYYRGPPP------PAPAGYLHLTAAQPRPLALPSSSAGGYSREEEDVS 157
L + SP PP P P Y T+A P + L S S+G ++D +
Sbjct: 87 LNFLTAPPISSPSGTESPPSRHVSSPVPCSYY--TSAPPHHVIL-SLSSGFPGPSDQDPT 143
Query: 158 NPSSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHV 217
S G +KR RTKFT EQK KM FAE+ GW+I DE SV +FC E G++R V
Sbjct: 144 VVRSENSSRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVGIERGV 203
Query: 218 LKVWMHNNKHTL 229
LKVWMHNNK++L
Sbjct: 204 LKVWMHNNKYSL 215
>sp|Q68G74|LHX8_HUMAN LIM/homeobox protein Lhx8 OS=Homo sapiens GN=LHX8 PE=2 SV=2
Length = 356
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 145 SAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLG-FAEQLGWRIQKHDEAS 203
S G E+DV++P + KR RT FTA+Q + M FA+ D +
Sbjct: 208 SVEGALLTEQDVNHPKPA--------KRARTSFTADQLQVMQAQFAQD-----NNPDAQT 254
Query: 204 VEQFCAETGVKRHVLKVWMHNNK 226
+++ TG+ R V++VW N +
Sbjct: 255 LQKLAERTGLSRRVIQVWFQNCR 277
>sp|O35652|LHX8_MOUSE LIM/homeobox protein Lhx8 OS=Mus musculus GN=Lhx8 PE=2 SV=4
Length = 367
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 145 SAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLG-FAEQLGWRIQKHDEAS 203
S G E+DV++P + KR RT FTA+Q + M FA+ D +
Sbjct: 229 SVEGALLTEQDVNHPKPA--------KRARTSFTADQLQVMQAQFAQD-----NNPDAQT 275
Query: 204 VEQFCAETGVKRHVLKVWMHNNK 226
+++ TG+ R V++VW N +
Sbjct: 276 LQKLAERTGLSRRVIQVWFQNCR 298
>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
Length = 363
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 171 KRHRTKFTAEQKEKMLG-FAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
KR RT FTAEQ + M FA+ D ++++ TG+ R V++VW N +
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQD-----NNPDAQTLQKLADMTGLSRRVIQVWFQNCR 271
>sp|A2T7P4|GSC_PONPY Homeobox protein goosecoid OS=Pongo pygmaeus GN=GSC PE=3 SV=1
Length = 257
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
PAP+GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PAPSGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|Q9UPM6|LHX6_HUMAN LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=2 SV=2
Length = 363
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 171 KRHRTKFTAEQKEKMLG-FAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
KR RT FTAEQ + M FA+ D ++++ TG+ R V++VW N +
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQD-----NNPDAQTLQKLADMTGLSRRVIQVWFQNCR 271
>sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculus GN=Gsc2 PE=2 SV=1
Length = 198
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 126 AGYLHLTAAQPRPLALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKM 185
A L L A P PL P + + + +SG G +RHRT F+ EQ + +
Sbjct: 85 AWPLRLAPATPSPLTAPRAGSPALT---------GTSGPGPQRRTRRHRTIFSEEQLQAL 135
Query: 186 LGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
E L + Q D + E+ ++ ++VW N +
Sbjct: 136 ----EALFVQNQYPDVGTRERLAVRIRLREERVEVWFKNRR 172
>sp|P56915|GSC_HUMAN Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2
Length = 257
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|A1YFI3|GSC_SAGLB Homeobox protein goosecoid OS=Saguinus labiatus GN=GSC PE=3 SV=1
Length = 257
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|Q02591|GSC_MOUSE Homeobox protein goosecoid OS=Mus musculus GN=Gsc PE=2 SV=1
Length = 256
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|A2T733|GSC_PANTR Homeobox protein goosecoid OS=Pan troglodytes GN=GSC PE=3 SV=1
Length = 257
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|A1YG57|GSC_PANPA Homeobox protein goosecoid OS=Pan paniscus GN=GSC PE=3 SV=1
Length = 257
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|A1YEY5|GSC_GORGO Homeobox protein goosecoid OS=Gorilla gorilla gorilla GN=GSC PE=3
SV=1
Length = 257
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 123 PAPAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTA 179
P P GY + P+ LP + G SR E + N K+RHRT FT
Sbjct: 115 PTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTD 169
Query: 180 EQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 170 EQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
PE=2 SV=1
Length = 382
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 139 LALPSSSAGGYSREEEDVSNPSSSGGGSGGTK--------KRHRTKFTAEQKEKMLGFAE 190
L P++S G S +EE + S+ G G G ++ KR RT T +Q+ E
Sbjct: 157 LVSPAASDSGKSDDEESLCK-SAHGAGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFE 215
Query: 191 QLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231
+K E AETG+ V++VW N + + K
Sbjct: 216 VSSKPCRKVRET----LAAETGLSVRVVQVWFQNQRAKMKK 252
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 142 PSSSAGGYSR--EEEDVSNPSSSGGGSGGTK----KRHRTKFTAEQKEKMLGFAEQLGWR 195
P+S+ R EE+ ++P + G+GG + KR RT T EQ E + Q
Sbjct: 2607 PTSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQLEILY----QKYLL 2662
Query: 196 IQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
++ E G+K+ V++VW N +
Sbjct: 2663 DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 2693
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 142 PSSSAGGYSR--EEEDVSNPSSSGGGSGGTK----KRHRTKFTAEQKEKMLGFAEQLGWR 195
P+S+ R EE+ ++P + G+GG + KR RT T EQ E + Q
Sbjct: 2616 PTSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQLEILY----QKYLL 2671
Query: 196 IQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
++ E G+K+ V++VW N +
Sbjct: 2672 DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 2702
>sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus apella GN=PROP1 PE=3
SV=1
Length = 226
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
+++RHRT F+A Q E++ E R Q D + E +TG+ ++VW N +
Sbjct: 68 SRRRHRTTFSAVQLEQL----ESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRR 121
>sp|P53545|GSC_CHICK Homeobox protein goosecoid OS=Gallus gallus GN=GSC PE=2 SV=1
Length = 245
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 125 PAGYLHLTAAQPRPL---ALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQ 181
PAGY + P+ LP + G SR E + N K+RHRT FT EQ
Sbjct: 107 PAGYEGAGSVLMSPVPHQMLPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTDEQ 161
Query: 182 KEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
E + E L + D + EQ + ++ ++VW N +
Sbjct: 162 LEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 202
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 139 LALPSSSAGGYSREEEDVSNPSSSGGGSGGTK--------KRHRTKFTAEQKEKMLGFAE 190
L P++S G S +EE + S+ G G G ++ KR RT T +Q+ A
Sbjct: 157 LVSPAASDSGKSDDEESLCK-SAHGAGKGTSEDGKDHKRPKRPRTILTTQQRR-----AF 210
Query: 191 QLGWRIQKHDEASV-EQFCAETGVKRHVLKVWMHNNKHTLGK 231
+ + + V E AETG+ V++VW N + + K
Sbjct: 211 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 252
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 111 QQFSPYYRGPPPPAPAGYLHLTAAQPRPLALPSSSAGGYSREEEDVSNPSSSGGGSGGTK 170
+ +P + G PPP+ A Q R ++ +S S ED S+ +S S K
Sbjct: 115 EPLAPRFPGRPPPS-------AARQKRSESVSTSDEDSPS---EDRSDRKASPAPSKRKK 164
Query: 171 KRHRTKFTAEQKEKM-LGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTL 229
+RHRT FTA Q E++ F+E D + E +T + ++VW N +
Sbjct: 165 RRHRTVFTAHQLEELEKAFSE-----AHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 219
Query: 230 GKK 232
K+
Sbjct: 220 RKR 222
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
Length = 3550
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 142 PSSSAGGYSREEEDVSNPSSS---GGGSGGTK---KRHRTKFTAEQKEKMLGFAEQLGWR 195
P+S A R+ ED + + S GG SG + KR RT T EQ E + +
Sbjct: 2508 PASVAASLKRKLEDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQLEILYE-----KYL 2562
Query: 196 IQKH-DEASVEQFCAETGVKRHVLKVWMHNNK 226
+ + ++ E G+K+ V++VW N +
Sbjct: 2563 LDSNPTRKMLDHIAREVGLKKRVVQVWFQNTR 2594
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
PE=2 SV=1
Length = 382
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 139 LALPSSSAGGYSREEEDVSNPSSSGGGSGGTK--------KRHRTKFTAEQKEKMLGFAE 190
L P++S G S +EE + S+ G G G + KR RT T +Q+ A
Sbjct: 157 LVSPAASDSGKSDDEESLCK-SAHGAGKGTAEEGKDHKRPKRPRTILTTQQRR-----AF 210
Query: 191 QLGWRIQKHDEASV-EQFCAETGVKRHVLKVWMHNNKHTLGK 231
+ + + V E AETG+ V++VW N + + K
Sbjct: 211 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 252
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKH 227
G K+R+RT FT+ Q E++ E++ + D + EQ T + ++VW N +
Sbjct: 198 GKKRRNRTTFTSYQLEEL----EKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA 253
Query: 228 TLGKK 232
K+
Sbjct: 254 KWRKR 258
>sp|P53546|GSCB_XENLA Homeobox protein goosecoid isoform B OS=Xenopus laevis GN=gsc-b
PE=2 SV=1
Length = 243
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 141 LPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHD 200
LP + G SR E + N K+RHRT FT EQ E + E L + D
Sbjct: 124 LPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTDEQLEAL----ENLFQETKYPD 174
Query: 201 EASVEQFCAETGVKRHVLKVWMHNNK 226
+ EQ ++ ++VW N +
Sbjct: 175 VGTREQLARRVHLREEKVEVWFKNRR 200
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKH 227
G K+R+RT FT+ Q E++ E++ + D + EQ T + ++VW N +
Sbjct: 212 GKKRRNRTTFTSYQLEEL----EKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA 267
Query: 228 TLGKK 232
K+
Sbjct: 268 KWRKR 272
>sp|P29454|GSCA_XENLA Homeobox protein goosecoid isoform A OS=Xenopus laevis GN=gsc-a
PE=2 SV=2
Length = 243
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 141 LPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHD 200
LP + G SR E + N K+RHRT FT EQ E + E L + D
Sbjct: 124 LPYMNVGTLSRTELQLLNQLHCR-----RKRRHRTIFTDEQLEAL----ENLFQETKYPD 174
Query: 201 EASVEQFCAETGVKRHVLKVWMHNNK 226
+ EQ ++ ++VW N +
Sbjct: 175 VGTREQLARRVHLREEKVEVWFKNRR 200
>sp|P23209|RT13_DAUCA Ribosomal protein S13, mitochondrial OS=Daucus carota GN=RPS13 PE=3
SV=1
Length = 116
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 164 GGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCA 209
G SG K + TK+ +Q E+M+G + W +++ + A +E+F +
Sbjct: 38 GISGNIKIKELTKYQIDQMEQMIGQDHVVHWELKRGERADIERFIS 83
>sp|Q3LU41|PROP1_THEGE Homeobox protein prophet of Pit-1 OS=Theropithecus gelada GN=PROP1
PE=3 SV=1
Length = 226
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 161 SSGGGSGG---TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHV 217
S GG G +++RHRT F+ Q E++ E R Q D + E +TG+
Sbjct: 57 SPQGGQRGRPHSRRRHRTTFSPVQLEQL----ESAFGRNQYPDIWARESLARDTGLSEAR 112
Query: 218 LKVWMHNNK 226
++VW N +
Sbjct: 113 IQVWFQNRR 121
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 142 PSSSAGGYSREEEDVSNPSSS---GGGSGGTK---KRHRTKFTAEQKEKMLGFAEQLGWR 195
P++ +G R+ +D + + S GG SG + KR RT T EQ E + +
Sbjct: 2514 PATVSGSMKRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQLEILYE-----KYL 2568
Query: 196 IQKH-DEASVEQFCAETGVKRHVLKVWMHNNK 226
+ + ++ E G+K+ V++VW N +
Sbjct: 2569 LDSNPTRKMLDHIAREVGLKKRVVQVWFQNTR 2600
>sp|Q0KEB0|LPTD_CUPNH LPS-assembly protein LptD OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=lptD PE=3 SV=1
Length = 813
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 110 QQQFSPYYRGPPPPAP---------AGYLHLTAAQPRPLALPSSSAGGYSR 151
+Q+ SP R P PAP AG LH A +P LA+ S SAG +++
Sbjct: 3 EQRRSPNNRALPSPAPTSVPARARRAGGLHAGALRPLVLAMASLSAGAHAQ 53
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 142 PSSSAGGYSREEEDVSNPSSS---GGGSGGTK---KRHRTKFTAEQKEKMLGFAEQLGWR 195
P++ A R+ +D + + S GG SG + KR RT T EQ E + +
Sbjct: 2526 PTTVAASLKRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQLEILYE-----KYL 2580
Query: 196 IQKH-DEASVEQFCAETGVKRHVLKVWMHNNK 226
+ + ++ E G+K+ V++VW N +
Sbjct: 2581 LDSNPTRKMLDHIAREVGLKKRVVQVWFQNTR 2612
>sp|P53544|GSC_DANRE Homeobox protein goosecoid OS=Danio rerio GN=gsc PE=2 SV=1
Length = 240
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226
K+RHRT FT EQ E + E L + D + EQ + ++ ++VW N +
Sbjct: 146 KRRHRTIFTDEQLEAL----ENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 198
>sp|Q8BYR2|LATS1_MOUSE Serine/threonine-protein kinase LATS1 OS=Mus musculus GN=Lats1 PE=1
SV=3
Length = 1129
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 114 SPYYRGPPPPAPAGYLHLTAAQPRPLALPSSSAGGYSREE------EDVSNPSSSGGGSG 167
+P Y+GPPPP P LH + P P S ++E ED S S+ G SG
Sbjct: 548 APSYQGPPPPYPKHLLHQNPSVP-----PYESVSKPCKDEQPSLPKEDDSEKSADSGDSG 602
Query: 168 GTKKRHRT 175
+K+ T
Sbjct: 603 DKEKKQIT 610
>sp|P09075|HME60_APIME Homeobox protein E60 (Fragment) OS=Apis mellifera PE=3 SV=3
Length = 109
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 161 SSGGGSGGT--KKRHRTKFTAEQKEKM-LGFAEQLGWRIQKHDEASVEQFCAETGVKRHV 217
S G G+GGT +KR RT F+ EQ ++ FAE + E +Q + G+
Sbjct: 9 SDGRGNGGTPEEKRPRTAFSGEQLARLKREFAEN-----RYLTERRRQQLSRDLGLNEAQ 63
Query: 218 LKVWMHNNKHTLGK 231
+K+W N + + K
Sbjct: 64 IKIWFQNKRAKIKK 77
>sp|P56223|PO6F1_RAT POU domain, class 6, transcription factor 1 OS=Rattus norvegicus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 164 GGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMH 223
GG K++ RT FT + E + + E+ + + + E R V++VW
Sbjct: 228 GGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQE----ITEIAKELNYDREVVRVWFC 283
Query: 224 NNKHTL 229
N + TL
Sbjct: 284 NRRQTL 289
>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh OS=Drosophila melanogaster GN=Awh PE=1
SV=1
Length = 275
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 157 SNPSSSGGGSGGTK-KRHRTKFTAEQKEKMLGFAEQLGWRIQKH-DEASVEQFCAETGVK 214
S+ G G +K KR RT FT EQ + + Q ++I + D +E+ + TG+
Sbjct: 134 SDEGCDGDGYHKSKTKRVRTTFTEEQLQVL-----QANFQIDSNPDGQDLERIASVTGLS 188
Query: 215 RHVLKVWMHNNK 226
+ V +VW N++
Sbjct: 189 KRVTQVWFQNSR 200
>sp|Q07916|PO6F1_MOUSE POU domain, class 6, transcription factor 1 OS=Mus musculus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 151 REEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAE 210
R +E N GG K++ RT FT + E + + E+ + + + E
Sbjct: 215 RNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQE----ITEIAKE 270
Query: 211 TGVKRHVLKVWMHNNKHTL 229
R V++VW N + TL
Sbjct: 271 LNYDREVVRVWFCNRRQTL 289
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 171 KRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCA--ETGVKRHVLKVWMHNNK 226
KR RT EQ E + W +Q + C E G+K+ V++VW N +
Sbjct: 1858 KRLRTTILPEQLEILYR------WYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTR 1909
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 170 KKRHRTKFTAEQKEKM-LGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHT 228
K+RHRT FTA Q E++ F E D + E A+T + ++VW N +
Sbjct: 171 KRRHRTVFTAHQLEELEKAFGE-----AHYPDVYAREMLAAKTELPEDRIQVWFQNRRAK 225
Query: 229 LGKK 232
K+
Sbjct: 226 WRKR 229
>sp|Q14863|PO6F1_HUMAN POU domain, class 6, transcription factor 1 OS=Homo sapiens
GN=POU6F1 PE=1 SV=1
Length = 301
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 151 REEEDVSNPSSSGGGSGGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEAS---VEQF 207
R +E N GG K++ RT FT + E + + E K+ + + +
Sbjct: 215 RNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFE-------KNPLPTGQEITEI 267
Query: 208 CAETGVKRHVLKVWMHNNKHTL 229
E R V++VW N + TL
Sbjct: 268 AKELNYDREVVRVWFCNRRQTL 289
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 118 RGPPPPAPAGYLHLTAAQPRPLALPSSSAGGYSREEEDVSNPSSSGGGSGGTKKRHRTKF 177
RGP P AP A R S S + ED ++ +S K+RHRT F
Sbjct: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVF 171
Query: 178 TAEQKEKM-LGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232
TA Q E++ F+E D + E +T + ++VW N + K+
Sbjct: 172 TAHQLEELEKAFSEA-----HYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,748,291
Number of Sequences: 539616
Number of extensions: 4439410
Number of successful extensions: 15703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 15490
Number of HSP's gapped (non-prelim): 301
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)