Query 043261
Match_columns 233
No_of_seqs 243 out of 1099
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.9 2.5E-23 8.6E-28 155.8 5.9 66 167-232 14-79 (80)
2 1wh5_A ZF-HD homeobox family p 99.9 2.5E-23 8.5E-28 155.4 5.7 65 168-232 15-79 (80)
3 2da3_A Alpha-fetoprotein enhan 99.8 4.3E-20 1.5E-24 135.7 2.4 62 167-232 14-75 (80)
4 2cra_A Homeobox protein HOX-B1 99.8 1.4E-19 4.9E-24 130.6 3.7 62 167-232 4-65 (70)
5 2da4_A Hypothetical protein DK 99.8 4.7E-20 1.6E-24 136.3 0.2 65 168-232 6-70 (80)
6 2da2_A Alpha-fetoprotein enhan 99.8 2E-19 6.7E-24 129.5 3.4 62 167-232 4-65 (70)
7 2kt0_A Nanog, homeobox protein 99.8 4.9E-19 1.7E-23 131.5 5.6 62 167-232 19-80 (84)
8 2dmt_A Homeobox protein BARH-l 99.8 3.3E-19 1.1E-23 131.9 4.6 62 167-232 14-75 (80)
9 2djn_A Homeobox protein DLX-5; 99.8 2.3E-19 8E-24 129.5 3.5 62 167-232 4-65 (70)
10 2dmq_A LIM/homeobox protein LH 99.8 1.1E-19 3.8E-24 133.9 1.5 61 168-232 5-65 (80)
11 2dmu_A Homeobox protein goosec 99.7 1.8E-19 6.3E-24 129.9 2.1 61 168-232 5-65 (70)
12 2da1_A Alpha-fetoprotein enhan 99.7 2.6E-19 8.8E-24 128.9 2.3 62 167-232 4-65 (70)
13 2dms_A Homeobox protein OTX2; 99.7 3.6E-19 1.2E-23 131.5 2.4 62 167-232 4-65 (80)
14 2vi6_A Homeobox protein nanog; 99.7 3.3E-19 1.1E-23 125.8 1.8 61 169-233 2-62 (62)
15 2cue_A Paired box protein PAX6 99.7 3E-19 1E-23 132.2 1.2 61 168-232 5-65 (80)
16 1bw5_A ISL-1HD, insulin gene e 99.7 8.8E-19 3E-23 125.0 3.2 61 169-233 2-62 (66)
17 2hdd_A Protein (engrailed home 99.7 4.4E-19 1.5E-23 124.8 1.6 60 169-232 2-61 (61)
18 1nk2_P Homeobox protein VND; h 99.7 9.1E-19 3.1E-23 128.7 2.3 62 167-232 6-67 (77)
19 2e1o_A Homeobox protein PRH; D 99.7 8.7E-19 3E-23 126.5 2.1 61 168-232 5-65 (70)
20 2m0c_A Homeobox protein arista 99.7 1.8E-18 6.2E-23 125.4 3.7 61 168-232 7-67 (75)
21 2h1k_A IPF-1, pancreatic and d 99.7 7E-19 2.4E-23 124.6 1.0 60 169-232 2-61 (63)
22 2l7z_A Homeobox protein HOX-A1 99.7 3.5E-18 1.2E-22 124.6 3.8 61 168-232 5-65 (73)
23 2r5y_A Homeotic protein sex co 99.7 1.5E-18 5.1E-23 130.5 1.9 61 168-232 26-86 (88)
24 1b8i_A Ultrabithorax, protein 99.7 1.7E-18 6E-23 128.6 2.1 61 168-232 18-78 (81)
25 1fjl_A Paired protein; DNA-bin 99.7 1E-18 3.5E-23 129.4 0.8 61 168-232 16-76 (81)
26 1ig7_A Homeotic protein MSX-1; 99.7 1.4E-18 4.8E-23 120.7 1.1 57 171-231 1-57 (58)
27 1wi3_A DNA-binding protein SAT 99.7 3.1E-18 1E-22 126.4 2.9 60 167-230 4-64 (71)
28 2dn0_A Zinc fingers and homeob 99.7 5.2E-18 1.8E-22 124.4 3.6 60 169-232 7-66 (76)
29 1ahd_P Antennapedia protein mu 99.7 1.1E-18 3.7E-23 125.7 -0.1 59 170-232 2-60 (68)
30 1jgg_A Segmentation protein EV 99.7 1.9E-18 6.4E-23 121.2 1.1 58 171-232 2-59 (60)
31 3rkq_A Homeobox protein NKX-2. 99.7 3.8E-18 1.3E-22 117.7 2.4 57 170-230 2-58 (58)
32 1puf_A HOX-1.7, homeobox prote 99.7 4.5E-18 1.5E-22 125.0 2.8 61 168-232 11-71 (77)
33 3nar_A ZHX1, zinc fingers and 99.7 4.3E-18 1.5E-22 130.2 2.4 62 168-233 23-84 (96)
34 1yz8_P Pituitary homeobox 2; D 99.7 8.5E-19 2.9E-23 125.9 -1.4 60 169-232 2-61 (68)
35 3a01_A Homeodomain-containing 99.7 3.4E-18 1.1E-22 130.4 1.8 61 168-232 15-75 (93)
36 2k40_A Homeobox expressed in E 99.7 4.1E-18 1.4E-22 121.8 2.0 59 170-232 1-59 (67)
37 1zq3_P PRD-4, homeotic bicoid 99.7 2.2E-18 7.6E-23 123.9 0.5 59 170-232 2-60 (68)
38 1ftt_A TTF-1 HD, thyroid trans 99.7 3.2E-18 1.1E-22 123.0 1.4 59 170-232 2-60 (68)
39 1du6_A PBX1, homeobox protein 99.7 9.5E-18 3.3E-22 118.7 2.8 60 169-232 2-64 (64)
40 2da5_A Zinc fingers and homeob 99.7 1.2E-17 4.1E-22 122.5 2.8 58 171-232 8-65 (75)
41 2ly9_A Zinc fingers and homeob 99.7 1.5E-17 5.2E-22 120.8 3.2 60 169-232 5-64 (74)
42 1akh_A Protein (mating-type pr 99.7 8.6E-18 2.9E-22 117.8 1.6 59 168-230 3-61 (61)
43 3a02_A Homeobox protein arista 99.7 1E-17 3.4E-22 117.4 1.5 56 173-232 2-57 (60)
44 1x2n_A Homeobox protein pknox1 99.7 1.6E-17 5.4E-22 120.6 2.1 65 167-232 4-68 (73)
45 2cuf_A FLJ21616 protein; homeo 99.7 8.6E-18 2.9E-22 128.1 0.7 62 167-232 4-80 (95)
46 1b72_A Protein (homeobox prote 99.7 8.9E-18 3E-22 128.5 0.2 61 168-232 32-92 (97)
47 1uhs_A HOP, homeodomain only p 99.7 1.2E-17 4E-22 121.2 0.7 58 171-232 2-60 (72)
48 2hi3_A Homeodomain-only protei 99.7 1.3E-17 4.3E-22 121.5 0.7 58 171-232 3-61 (73)
49 1au7_A Protein PIT-1, GHF-1; c 99.6 3.4E-17 1.2E-21 134.2 2.6 62 168-233 85-146 (146)
50 3a03_A T-cell leukemia homeobo 99.6 1.2E-17 4.1E-22 115.9 -0.1 55 175-233 2-56 (56)
51 2ecc_A Homeobox and leucine zi 99.6 2.9E-17 1E-21 122.6 1.7 56 173-232 6-61 (76)
52 1e3o_C Octamer-binding transcr 99.6 5.1E-17 1.7E-21 134.6 2.4 62 168-233 99-160 (160)
53 1puf_B PRE-B-cell leukemia tra 99.6 3.9E-17 1.3E-21 118.5 1.4 59 170-232 1-62 (73)
54 1b72_B Protein (PBX1); homeodo 99.6 5E-17 1.7E-21 121.3 1.0 59 170-232 1-62 (87)
55 3d1n_I POU domain, class 6, tr 99.6 1.4E-16 4.7E-21 130.6 3.3 61 167-231 90-150 (151)
56 2dmn_A Homeobox protein TGIF2L 99.6 1.4E-16 4.7E-21 119.1 2.4 64 167-231 4-67 (83)
57 2da6_A Hepatocyte nuclear fact 99.6 8.4E-17 2.9E-21 126.3 1.3 62 167-232 3-85 (102)
58 2xsd_C POU domain, class 3, tr 99.6 1E-16 3.5E-21 133.8 1.8 61 168-232 97-157 (164)
59 1k61_A Mating-type protein alp 99.6 2E-16 6.7E-21 110.6 2.0 56 173-232 1-59 (60)
60 1mnm_C Protein (MAT alpha-2 tr 99.6 2.2E-16 7.4E-21 118.4 2.3 60 168-231 25-87 (87)
61 1lfb_A Liver transcription fac 99.6 2.4E-16 8.1E-21 122.4 2.3 62 168-233 7-89 (99)
62 1le8_B Mating-type protein alp 99.6 3.4E-16 1.2E-20 116.7 2.4 59 170-232 2-63 (83)
63 2ecb_A Zinc fingers and homeob 99.6 2.9E-16 1E-20 120.1 2.0 53 176-232 17-69 (89)
64 2dmp_A Zinc fingers and homeob 99.6 6.8E-16 2.3E-20 116.9 3.7 54 175-232 18-71 (89)
65 2cqx_A LAG1 longevity assuranc 99.6 2.5E-16 8.4E-21 115.3 0.4 58 171-232 9-67 (72)
66 2d5v_A Hepatocyte nuclear fact 99.6 6.9E-16 2.3E-20 127.5 2.8 61 168-232 95-155 (164)
67 3l1p_A POU domain, class 5, tr 99.5 5.1E-16 1.8E-20 128.1 0.6 61 168-232 94-154 (155)
68 2l9r_A Homeobox protein NKX-3. 99.5 1.8E-15 6E-20 110.6 2.2 54 176-233 10-63 (69)
69 2e19_A Transcription factor 8; 99.5 3.6E-15 1.2E-19 107.0 3.1 55 174-232 7-61 (64)
70 3nau_A Zinc fingers and homeob 99.5 3.2E-15 1.1E-19 109.1 0.3 51 177-231 11-61 (66)
71 1x2m_A LAG1 longevity assuranc 99.5 1.3E-14 4.5E-19 105.0 2.4 51 179-232 9-59 (64)
72 1ic8_A Hepatocyte nuclear fact 99.4 3.5E-14 1.2E-18 122.0 -0.2 61 168-232 113-194 (194)
73 3k2a_A Homeobox protein MEIS2; 99.3 2.7E-13 9.2E-18 97.6 1.2 56 176-232 4-59 (67)
74 2h8r_A Hepatocyte nuclear fact 99.2 1.5E-12 5.2E-17 114.1 2.4 59 168-230 140-219 (221)
75 2da7_A Zinc finger homeobox pr 99.2 3.2E-12 1.1E-16 94.4 1.2 47 179-229 14-60 (71)
76 1mh3_A Maltose binding-A1 home 99.2 3E-12 1E-16 114.7 0.3 57 170-230 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.0 4E-11 1.4E-15 91.9 -0.2 56 175-231 10-65 (89)
78 2nzz_A Penetratin conjugated G 98.4 2.1E-08 7.2E-13 65.5 -0.7 17 216-232 1-17 (37)
79 2ys9_A Homeobox and leucine zi 88.2 0.15 5E-06 37.4 1.0 37 183-223 19-55 (70)
80 2glo_A Brinker CG9653-PA; prot 86.7 0.27 9.2E-06 33.0 1.6 46 174-224 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 85.5 0.3 1E-05 35.3 1.5 46 170-224 16-61 (87)
82 1hlv_A CENP-B, major centromer 83.8 0.41 1.4E-05 36.2 1.7 48 172-226 3-50 (131)
83 1tc3_C Protein (TC3 transposas 79.0 0.79 2.7E-05 27.8 1.4 42 176-226 5-46 (51)
84 1jko_C HIN recombinase, DNA-in 78.7 0.47 1.6E-05 29.5 0.3 44 176-228 5-48 (52)
85 2jn6_A Protein CGL2762, transp 73.8 1.7 5.8E-05 31.4 2.2 45 174-225 3-47 (97)
86 1p4w_A RCSB; solution structur 66.9 1.6 5.6E-05 32.6 0.8 47 174-230 32-78 (99)
87 1iuf_A Centromere ABP1 protein 65.8 4.6 0.00016 31.6 3.3 48 171-225 6-60 (144)
88 3c57_A Two component transcrip 64.5 1.2 4E-05 32.6 -0.4 47 176-232 27-73 (95)
89 1je8_A Nitrate/nitrite respons 64.1 0.91 3.1E-05 32.3 -1.0 48 175-232 20-67 (82)
90 2rn7_A IS629 ORFA; helix, all 62.8 4.3 0.00015 29.6 2.5 49 174-224 4-53 (108)
91 2ofy_A Putative XRE-family tra 60.1 2.7 9.3E-05 29.1 0.9 50 174-226 3-52 (86)
92 2rnj_A Response regulator prot 58.4 2.3 7.8E-05 30.5 0.2 48 175-232 28-75 (91)
93 2rgt_A Fusion of LIM/homeobox 57.8 0.11 3.7E-06 42.0 -7.8 30 168-201 134-163 (169)
94 3hug_A RNA polymerase sigma fa 56.8 0.42 1.4E-05 34.5 -4.0 46 176-230 37-82 (92)
95 1fse_A GERE; helix-turn-helix 56.2 2.1 7.2E-05 28.7 -0.3 48 174-231 9-56 (74)
96 1x3u_A Transcriptional regulat 54.1 1.7 5.9E-05 29.7 -1.0 47 176-232 16-62 (79)
97 2p7v_B Sigma-70, RNA polymeras 53.1 1.5 5E-05 29.7 -1.5 51 176-231 5-55 (68)
98 1u78_A TC3 transposase, transp 51.2 5.6 0.00019 29.5 1.4 43 175-226 5-47 (141)
99 2o8x_A Probable RNA polymerase 49.8 0.8 2.7E-05 30.6 -3.3 47 176-231 15-61 (70)
100 2k27_A Paired box protein PAX- 46.1 10 0.00035 29.3 2.3 43 175-226 24-66 (159)
101 1irz_A ARR10-B; helix-turn-hel 45.9 6.7 0.00023 27.9 1.0 61 170-232 3-63 (64)
102 1k78_A Paired box protein PAX5 45.4 11 0.00037 28.8 2.2 41 175-224 31-71 (149)
103 1l0o_C Sigma factor; bergerat 45.1 4.5 0.00015 32.3 0.0 45 177-230 199-243 (243)
104 1pdn_C Protein (PRD paired); p 44.9 6.7 0.00023 28.3 0.9 41 175-224 16-56 (128)
105 3i5g_B Myosin regulatory light 44.0 51 0.0017 25.1 6.0 44 173-216 6-50 (153)
106 2r1j_L Repressor protein C2; p 43.5 9.1 0.00031 24.6 1.3 35 184-226 9-43 (68)
107 3clo_A Transcriptional regulat 43.4 4.5 0.00016 34.1 -0.2 48 175-232 196-243 (258)
108 1zug_A Phage 434 CRO protein; 42.7 10 0.00034 24.7 1.5 36 184-227 7-42 (71)
109 3m20_A 4-oxalocrotonate tautom 42.1 39 0.0013 22.3 4.4 35 177-225 10-44 (62)
110 1tty_A Sigma-A, RNA polymerase 41.0 1.9 6.4E-05 30.8 -2.6 51 176-231 18-68 (87)
111 3fia_A Intersectin-1; EH 1 dom 40.4 11 0.00038 29.5 1.6 46 176-221 26-72 (121)
112 3ulq_B Transcriptional regulat 40.1 5.5 0.00019 29.0 -0.2 47 174-230 27-73 (90)
113 2x48_A CAG38821; archeal virus 39.0 10 0.00034 24.2 1.0 39 176-223 13-53 (55)
114 3kz3_A Repressor protein CI; f 38.1 5 0.00017 27.5 -0.7 23 204-226 28-50 (80)
115 1s7o_A Hypothetical UPF0122 pr 36.7 3.3 0.00011 31.6 -2.0 46 176-230 22-67 (113)
116 2lfw_A PHYR sigma-like domain; 36.3 2.2 7.6E-05 33.2 -3.1 47 176-231 93-139 (157)
117 1r69_A Repressor protein CI; g 35.8 16 0.00053 23.6 1.6 24 204-227 17-40 (69)
118 2q0o_A Probable transcriptiona 35.4 6.7 0.00023 32.5 -0.4 47 174-230 173-219 (236)
119 1adr_A P22 C2 repressor; trans 35.4 14 0.00049 24.2 1.3 21 205-225 22-42 (76)
120 2ao9_A Phage protein; structur 34.8 9.6 0.00033 31.3 0.4 50 174-224 21-71 (155)
121 3m21_A Probable tautomerase HP 34.5 53 0.0018 21.9 4.2 36 176-225 13-48 (67)
122 1k81_A EIF-2-beta, probable tr 33.3 9.3 0.00032 23.9 0.1 14 79-92 19-32 (36)
123 1y7y_A C.AHDI; helix-turn-heli 33.2 18 0.00063 23.5 1.6 22 204-225 29-50 (74)
124 3b7h_A Prophage LP1 protein 11 32.5 18 0.00063 23.9 1.5 22 205-226 24-45 (78)
125 1gyx_A YDCE, B1461, hypothetic 32.1 55 0.0019 22.5 4.0 36 176-225 11-46 (76)
126 3abf_A 4-oxalocrotonate tautom 32.0 63 0.0022 20.8 4.1 35 177-225 12-46 (64)
127 2kpj_A SOS-response transcript 31.9 16 0.00054 25.7 1.1 20 205-224 26-45 (94)
128 3bdn_A Lambda repressor; repre 31.7 8.9 0.0003 31.3 -0.3 24 203-226 32-55 (236)
129 3mzy_A RNA polymerase sigma-H 31.1 2.4 8.1E-05 31.9 -3.6 45 176-230 109-153 (164)
130 1ku3_A Sigma factor SIGA; heli 31.1 2.5 8.4E-05 29.0 -3.2 50 176-230 10-59 (73)
131 3ej9_B Beta-subunit of trans-3 30.7 61 0.0021 23.5 4.1 33 178-224 12-44 (70)
132 2a6c_A Helix-turn-helix motif; 29.8 20 0.00069 24.7 1.4 21 205-225 35-55 (83)
133 1nee_A EIF-2-beta, probable tr 29.7 15 0.0005 29.6 0.7 15 79-93 121-135 (138)
134 1l3l_A Transcriptional activat 29.6 8.2 0.00028 31.9 -0.9 47 174-230 171-217 (234)
135 3bs3_A Putative DNA-binding pr 29.2 19 0.00067 23.6 1.2 17 199-215 50-66 (76)
136 1lmb_3 Protein (lambda repress 29.2 33 0.0011 23.6 2.4 23 204-226 33-55 (92)
137 2fnf_X Putative RAS effector N 29.1 24 0.00084 24.9 1.7 29 62-96 36-66 (72)
138 2k9q_A Uncharacterized protein 28.9 21 0.00072 23.9 1.3 21 205-225 19-39 (77)
139 2ef8_A C.ECOT38IS, putative tr 28.8 23 0.00079 23.7 1.5 36 183-226 13-48 (84)
140 2jpc_A SSRB; DNA binding prote 27.9 5.6 0.00019 25.8 -1.8 28 205-232 17-44 (61)
141 1rfh_A RAS association (ralgds 27.9 19 0.00063 24.4 0.9 24 63-92 24-49 (59)
142 1xsv_A Hypothetical UPF0122 pr 27.8 2.3 7.9E-05 32.3 -4.2 46 176-230 25-70 (113)
143 2gwr_A DNA-binding response re 27.8 17 0.00057 29.3 0.7 50 175-230 152-206 (238)
144 2jpf_A Hypothetical protein; a 27.6 6.7 0.00023 30.5 -1.6 7 218-224 54-60 (127)
145 2b5a_A C.BCLI; helix-turn-heli 27.2 22 0.00075 23.4 1.1 23 204-226 26-48 (77)
146 1p2f_A Response regulator; DRR 26.9 17 0.00057 28.6 0.6 50 175-230 144-196 (220)
147 1otf_A 4-oxalocrotonate tautom 26.9 78 0.0027 20.1 3.9 34 178-225 12-45 (62)
148 2lv7_A Calcium-binding protein 26.8 74 0.0025 22.8 4.1 50 173-222 26-78 (100)
149 3qp6_A CVIR transcriptional re 26.3 14 0.00048 31.6 0.0 48 174-231 195-242 (265)
150 3mb2_B 4-oxalocrotonate tautom 25.7 97 0.0033 22.5 4.4 34 178-225 14-47 (72)
151 1or7_A Sigma-24, RNA polymeras 25.1 3 0.0001 32.6 -4.2 29 203-231 158-186 (194)
152 1uiz_A MIF, macrophage migrati 24.9 82 0.0028 23.0 4.1 35 178-226 69-103 (115)
153 1hfo_A Migration inhibitory fa 24.2 86 0.0029 22.7 4.1 35 178-226 68-102 (113)
154 2d74_B Translation initiation 24.1 22 0.00074 29.0 0.7 16 79-94 123-138 (148)
155 2lhi_A Calmodulin, serine/thre 23.9 71 0.0024 24.8 3.8 43 174-216 2-45 (176)
156 3mb2_A 4-oxalocrotonate tautom 23.8 1E+02 0.0036 20.7 4.2 35 177-225 12-46 (72)
157 3gj5_B Nuclear pore complex pr 23.8 26 0.00088 21.9 0.9 12 78-89 18-29 (34)
158 2kvr_A Ubiquitin carboxyl-term 23.7 68 0.0023 25.1 3.6 25 204-228 72-96 (130)
159 1faq_A RAF-1; transferase, ser 23.7 35 0.0012 21.8 1.6 27 63-96 16-44 (52)
160 3c3w_A Two component transcrip 23.6 18 0.0006 29.0 0.1 47 175-231 148-194 (225)
161 2opa_A Probable tautomerase YW 23.4 1E+02 0.0034 19.5 3.9 34 178-225 12-45 (61)
162 3dcf_A Transcriptional regulat 23.4 13 0.00045 28.4 -0.7 39 183-226 38-76 (218)
163 1ity_A TRF1; helix-turn-helix, 23.2 77 0.0026 21.6 3.4 25 169-193 5-29 (69)
164 2ict_A Antitoxin HIGA; helix-t 23.2 27 0.00094 24.3 1.1 21 205-225 25-45 (94)
165 2os5_A Acemif; macrophage migr 23.2 93 0.0032 22.9 4.1 35 178-226 69-103 (119)
166 2g2k_A EIF-5, eukaryotic trans 23.1 22 0.00074 29.7 0.6 16 79-94 117-132 (170)
167 3fmy_A HTH-type transcriptiona 22.8 42 0.0014 22.6 2.0 41 175-226 9-49 (73)
168 2e9h_A EIF-5, eukaryotic trans 22.5 21 0.00072 29.4 0.4 16 79-94 124-139 (157)
169 3q0w_A HTH-type transcriptiona 22.3 18 0.00062 28.8 -0.1 38 184-226 52-89 (236)
170 2k27_A Paired box protein PAX- 22.1 57 0.0019 25.0 2.8 51 174-228 81-138 (159)
171 1qgp_A Protein (double strande 22.1 15 0.00052 26.0 -0.5 39 177-219 11-49 (77)
172 2l49_A C protein; P2 bacteriop 22.0 41 0.0014 23.4 1.8 20 205-224 21-40 (99)
173 1rp3_A RNA polymerase sigma fa 21.9 4 0.00014 32.7 -4.1 46 176-230 187-232 (239)
174 3gj3_B Nuclear pore complex pr 21.7 30 0.001 21.4 0.9 11 78-88 18-28 (33)
175 3t76_A VANU, transcriptional r 21.2 33 0.0011 24.7 1.2 20 198-217 62-81 (88)
176 2xi8_A Putative transcription 21.1 17 0.0006 23.0 -0.3 23 204-226 17-39 (66)
177 2wiu_B HTH-type transcriptiona 21.1 36 0.0012 23.0 1.3 22 204-225 28-49 (88)
178 2qko_A Possible transcriptiona 21.0 26 0.00088 27.2 0.6 26 200-225 47-72 (215)
179 3on2_A Probable transcriptiona 20.7 76 0.0026 23.5 3.2 39 183-226 19-57 (199)
180 3f6w_A XRE-family like protein 20.5 32 0.0011 23.1 1.0 21 205-225 31-51 (83)
181 3o9x_A Uncharacterized HTH-typ 20.5 51 0.0018 24.5 2.2 40 176-226 70-109 (133)
182 1j9i_A GPNU1 DBD;, terminase s 20.3 25 0.00086 23.7 0.3 23 204-226 5-27 (68)
183 1a04_A Nitrate/nitrite respons 20.1 22 0.00076 27.8 0.1 47 175-231 153-199 (215)
184 3cw2_K Translation initiation 20.0 31 0.0011 27.7 0.9 15 79-93 122-136 (139)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.5e-23 Score=155.83 Aligned_cols=66 Identities=76% Similarity=1.214 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++||.||.||.+|++.|+.|.+++||+++||+..++++||.+|+|++.+|||||||||+|+++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 356899999999999999998888899999999999999999999999999999999999999874
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.5e-23 Score=155.42 Aligned_cols=65 Identities=63% Similarity=1.126 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|++.|+.+|+++||+++||+..++++||.+|||++.+|||||||||+|+|+.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999874
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-20 Score=135.73 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++||.||.||.+|++.|+.+|+ .++||+..++++||.+|||++.+|+|||||+|+|+||+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYL----LDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHH----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 467899999999999999999999 89999999999999999999999999999999999986
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=130.64 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+.||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYA----ANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 356789999999999999999999 99999999999999999999999999999999999986
No 5
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-20 Score=136.30 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+.+|++-+|..+||+..++++||.+|||++.+|+|||||+|+|+||.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 56799999999999999999999666666999999999999999999999999999999999863
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2e-19 Score=129.54 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++||.||.||.+|+..|+.+|+ .++||+..++++||.+|||++.+|+|||||+|+|+||+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFD----ANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 356899999999999999999999 89999999999999999999999999999999999986
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=131.53 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++||.||.||.+|+..|+.+|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQ----RQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHH----HSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999 99999999999999999999999999999999999986
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-19 Score=131.92 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+.||.||.||.+|+..|+.+|+ .++||+..++++||.+|+|++.+|+|||||||+|+||+
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFE----KQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 356789999999999999999999 89999999999999999999999999999999999986
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=129.52 Aligned_cols=62 Identities=18% Similarity=0.348 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+...||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQ----KTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHc----CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 356789999999999999999999 99999999999999999999999999999999999986
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-19 Score=133.90 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+.+|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFA----INHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 56799999999999999999999 99999999999999999999999999999999999874
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-19 Score=129.86 Aligned_cols=61 Identities=25% Similarity=0.439 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+..||.||.||.+|+..|+.+|+ .++||+..++++||.+|||++.+|+|||||+|+|+||+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQ----ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 56789999999999999999999 89999999999999999999999999999999999875
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=128.92 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+.||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFD----INNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHH----HCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----HCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 356789999999999999999999 89999999999999999999999999999999999886
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3.6e-19 Score=131.51 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+.||.||.||.+|+..|+.+|+ .++||+..++++||.+|+|++.+|+|||||||+|+||+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFA----KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 356799999999999999999999 89999999999999999999999999999999999875
No 14
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=3.3e-19 Score=125.78 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
++||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||+|+|+||+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQ----KQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----hCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4688999999999999999999 999999999999999999999999999999999999863
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3e-19 Score=132.17 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+.+|+ .++||+..++++||.+|+|++.+|+|||||||+|+||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFE----RTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 56789999999999999999999 99999999999999999999999999999999999874
No 16
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=8.8e-19 Score=124.99 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
++||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYA----ANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHH----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4689999999999999999999 899999999999999999999999999999999999873
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=4.4e-19 Score=124.75 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFN----ENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 3689999999999999999999 99999999999999999999999999999999999884
No 18
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=9.1e-19 Score=128.70 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++||.||.||.+|+..|+.+|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFR----QQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHh----hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 456788999999999999999999 99999999999999999999999999999999999863
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8.7e-19 Score=126.49 Aligned_cols=61 Identities=11% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+.+|+ .++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFE----TQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----cCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 46788999999999999999999 99999999999999999999999999999999999864
No 20
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=125.40 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+++||.||.||.+|+..|+.+|+ .++||+..++.+||..|||++.+|+|||||+|+|+||+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQ----KTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999 99999999999999999999999999999999999986
No 21
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=7e-19 Score=124.63 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+.||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFL----FNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4688999999999999999999 99999999999999999999999999999999999874
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=3.5e-18 Score=124.56 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+.+|+ .++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYA----TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHH----HTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh----hCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 45789999999999999999999 89999999999999999999999999999999999985
No 23
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=1.5e-18 Score=130.49 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+..|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45789999999999999999999 99999999999999999999999999999999999986
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=1.7e-18 Score=128.64 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+||.||.||.+|+..|+..|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFH----TNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 45789999999999999999999 89999999999999999999999999999999999986
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1e-18 Score=129.36 Aligned_cols=61 Identities=28% Similarity=0.439 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+.+|+ .++||+..++.+||.++||++.+|+|||||+|+|+||+
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFE----RTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 56789999999999999999999 89999999999999999999999999999999999874
No 26
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.4e-18 Score=120.70 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 171 KRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||+|+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFR----QKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 68899999999999999999 9999999999999999999999999999999999875
No 27
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=3.1e-18 Score=126.36 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWR-IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr-~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+.+||.||.||.+|+..|+.+|+ . +.|||...|++|+.++||++++|||||||+|.-.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~----~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIH----DVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHH----HHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 357899999999999999999999 8 89999999999999999999999999999997543
No 28
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-18 Score=124.35 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~----~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFC----RNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH----HSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3466799999999999999999 99999999999999999999999999999999999986
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=1.1e-18 Score=125.70 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHH----HCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHc----cCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 588999999999999999999 99999999999999999999999999999999999864
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=1.9e-18 Score=121.18 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 171 KRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFY----KENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 68999999999999999999 89999999999999999999999999999999999876
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=3.8e-18 Score=117.69 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
+||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||+|+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFK----QQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578999999999999999999 999999999999999999999999999999999975
No 32
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=4.5e-18 Score=124.99 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+.+|+ .++||+..++++||.++||++.+|+|||||||+|+||.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFL----FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999 99999999999999999999999999999999999863
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=4.3e-18 Score=130.17 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
...+|.||.||.+|+..|+..|+ .++||+..++++||.+|||++.+|+|||||||+|+||+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFV----RTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 45678999999999999999999 899999999999999999999999999999999999863
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=8.5e-19 Score=125.91 Aligned_cols=60 Identities=23% Similarity=0.425 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
++||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQ----RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHT----TCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999874
No 35
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=3.4e-18 Score=130.39 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+.+|+ .++||+..++++||.++||++.+|+|||||||+|+||+
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFH----KQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhh
Confidence 56789999999999999999999 99999999999999999999999999999999999874
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-18 Score=121.80 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFR----VNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CcCCCCCCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 378999999999999999999 99999999999999999999999999999999999886
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-18 Score=123.89 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+||.||.||.+|+..|+..|+ .++||+..++..||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFL----QGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 588999999999999999999 99999999999999999999999999999999999864
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=3.2e-18 Score=123.04 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+||.||.||.+|+..|+..|+ .++||+..++.+||..+||++.+|+|||||+|+|+||+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFK----QQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHH----HSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCHHHHHHHHHHHH----hCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 688999999999999999999 99999999999999999999999999999999999875
No 39
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.5e-18 Score=118.75 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFA---EQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~f---eklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+.+|.||.||.+|++.|+.+| . .++||+..++++||.++||++.+|+|||||+|+++||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~----~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHL----SNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTT----TSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcc----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 458899999999999999999 7 89999999999999999999999999999999999985
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=122.47 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 171 KRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+.|+.||.+|+..|+..|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFA----QNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCCccCCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45677899999999999999 99999999999999999999999999999999999875
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=120.78 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..++.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYL----KNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 3478999999999999999999 89999999999999999999999999999999999986
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.67 E-value=8.6e-18 Score=117.77 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.++||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~----~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFR----RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----hCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35688999999999999999999 899999999999999999999999999999999975
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.66 E-value=1e-17 Score=117.43 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 173 HRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 173 ~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFS----RTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHH----cCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 589999999999999999 89999999999999999999999999999999999986
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.6e-17 Score=120.60 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+.||.||.||.+|+..|+..|.. -+.++||+..++++||.++||++.+|+|||||+|+|++|+
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQ-HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 3567889999999999999999971 0128999999999999999999999999999999999875
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=8.6e-18 Score=128.11 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhC---------------CCCCceeeeccccccccCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETG---------------VKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eig---------------l~~~vVKVWFQNrRaK~kK 231 (233)
..++||.||.||.+|+..|+.+|+ .++||+..++++||.+++ |++.+|+|||||||+|+||
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~----~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFN----ENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999 899999999999999999 9999999999999999986
Q ss_pred C
Q 043261 232 K 232 (233)
Q Consensus 232 K 232 (233)
+
T Consensus 80 ~ 80 (95)
T 2cuf_A 80 R 80 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=8.9e-18 Score=128.46 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
...||.||.||.+|+..|+..|+ .++||+..++++||.+|||++.+|+|||||||+|+||+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFH----FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45788999999999999999999 99999999999999999999999999999999999874
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.2e-17 Score=121.18 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 171 KRHRTKFTAEQKEKMLGFAEQLGWR-IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~feklGWr-~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+.||.||.+|+..|+.+|+ + ++||+..++++||.++||++.+|+|||||||+|+||+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~----~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFN----KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----SSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHH----ccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 46789999999999999999 8 9999999999999999999999999999999999864
No 48
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.3e-17 Score=121.46 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 171 KRHRTKFTAEQKEKMLGFAEQLGWR-IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~feklGWr-~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
++.||.||.+|+..|+.+|+ + ++||+..++++||.++||++.+|+|||||||+|+||+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~----~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFN----KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHH----HTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999 8 9999999999999999999999999999999999864
No 49
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=3.4e-17 Score=134.15 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
.++||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||||+|+||+.
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFG----EHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCcCccHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 56788999999999999999999 899999999999999999999999999999999999974
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.64 E-value=1.2e-17 Score=115.87 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
|.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||||+|+||++
T Consensus 2 T~ft~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 56 (56)
T 3a03_A 2 TSFSRSQVLELERRFL----RQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQT 56 (56)
T ss_dssp --CCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHH----hcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcccC
Confidence 7899999999999999 999999999999999999999999999999999999863
No 51
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.9e-17 Score=122.64 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 173 HRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 173 ~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.|++||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~----~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFL----QCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 567899999999999999 99999999999999999999999999999999999875
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.63 E-value=5.1e-17 Score=134.61 Aligned_cols=62 Identities=13% Similarity=0.289 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
.++||.||.||.+|+..|+.+|+ .++||+..++++||.++||++.+|+|||||||+|+||+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFM----ENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCcCccccCHHHHHHHHHHHh----hcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 46789999999999999999999 899999999999999999999999999999999999973
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.63 E-value=3.9e-17 Score=118.50 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFA---EQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~f---eklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.||.||.+|+..|+.+| . .++||+..+++.||.++||++.+|+|||||+|+|+||+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~----~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHL----SNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTT----TSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhc----cCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 37899999999999999999 7 89999999999999999999999999999999999875
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=5e-17 Score=121.35 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFA---EQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~f---eklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.||.||.+|++.|+.+| . .++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~----~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHL----SNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTT----TSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 37899999999999999999 7 89999999999999999999999999999999999875
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=130.59 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..++||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFE----KNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 357888999999999999999999 8999999999999999999999999999999999987
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=119.13 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..++||.||.||.+|+..|+..|.. -+.++||+..++++||.++||++.+|+|||||+|+|++|
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcH
Confidence 3567889999999999999999871 122699999999999999999999999999999999875
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-17 Score=126.27 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHh---------------------CCCCCceeeecccc
Q 043261 167 GGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAET---------------------GVKRHVLKVWMHNN 225 (233)
Q Consensus 167 ~~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~ei---------------------gl~~~vVKVWFQNr 225 (233)
..++||.||.||.+|+..|+.+|+ +++||+..+|++||.++ .|++.+|+||||||
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~----~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYD----RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 457899999999999999999999 99999999999999999 79999999999999
Q ss_pred ccccCCC
Q 043261 226 KHTLGKK 232 (233)
Q Consensus 226 RaK~kKK 232 (233)
|++++++
T Consensus 79 R~k~kr~ 85 (102)
T 2da6_A 79 RKEEAFR 85 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=1e-16 Score=133.79 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||||+|+||+
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFL----KCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp ---------CCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred ccCCCCceeccHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 56788999999999999999999 89999999999999999999999999999999999986
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.59 E-value=2e-16 Score=110.65 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCc---cCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 173 HRTKFTAEQKEKMLGFAEQLGWR---IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 173 ~RT~FT~eQ~~~L~~~feklGWr---~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.||.+|+..|+..|. . ++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 1 rr~~ft~~q~~~Le~~f~----~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFA----KNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHH----HTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHH----HcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 478999999999999999 7 9999999999999999999999999999999999985
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.59 E-value=2.2e-16 Score=118.40 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCc---cCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWR---IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr---~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..+++.||.||.+|+..|+..|. . ++||+..++++||.++||++.+|+|||||+|+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~----~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFA----KNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHH----HTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHH----HhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34677799999999999999999 7 999999999999999999999999999999999874
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=2.4e-16 Score=122.44 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHH------------------hC---CCCCceeeeccccc
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAE------------------TG---VKRHVLKVWMHNNK 226 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~e------------------ig---l~~~vVKVWFQNrR 226 (233)
.++||.||.||.+|+..|+.+|+ .++||+...+++||.+ || |++.+|+|||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~----~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYE----RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 46789999999999999999999 9999999999999999 88 99999999999999
Q ss_pred cccCCCC
Q 043261 227 HTLGKKP 233 (233)
Q Consensus 227 aK~kKK~ 233 (233)
++.++|.
T Consensus 83 ~k~k~k~ 89 (99)
T 1lfb_A 83 KEEAFRH 89 (99)
T ss_dssp HTTSCCC
T ss_pred HHHHHhc
Confidence 9998763
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.58 E-value=3.4e-16 Score=116.70 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=53.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCc---cCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWR---IQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr---~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+++.|+.||.+|+..|+..|. . ++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 K~krr~rft~~q~~~Le~~f~----~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFA----KNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHH----HTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHH----hhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 345677799999999999999 8 9999999999999999999999999999999999886
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.9e-16 Score=120.07 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.+|+..|+..|. .++||+..++++||..|||++.+|||||||||+||+|+
T Consensus 17 ~~t~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFL----NSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 899999999999999 99999999999999999999999999999999999875
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-16 Score=116.88 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..||.+|+..|+..|+ +++||+..++++||.+|||++.+|+|||||||+|++++
T Consensus 18 k~~t~~Ql~~Le~~F~----~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFL----KSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHc----cCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3599999999999999 99999999999999999999999999999999999775
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2.5e-16 Score=115.31 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 171 KRHRTKFTAEQKEKMLGFA-EQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~f-eklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+.|+.++.+|+..|+.+| + .++||+..++++||.++||++.+|||||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~----~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVS----VTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHH----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4566678889999999999 9 99999999999999999999999999999999999974
No 66
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.56 E-value=6.9e-16 Score=127.48 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+..|+ .++||+..++++||.++||++.+|+|||||||+|+||.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~----~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFK----ENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 46789999999999999999999 89999999999999999999999999999999999986
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.55 E-value=5.1e-16 Score=128.12 Aligned_cols=61 Identities=16% Similarity=0.345 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++||.||.||.+|+..|+..|+ .++||+..++.+||.++||++.+|+|||||||+|+||-
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFL----KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTT----TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHc----cCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 46788999999999999999999 99999999999999999999999999999999999984
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=110.55 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 233 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK~ 233 (233)
.+|..|+..|+..|+ .++||+..++.+||.++||++.+|||||||||+|+||+.
T Consensus 10 ~~t~~ql~~LE~~F~----~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFS----HQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 679999999999999 999999999999999999999999999999999999863
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-15 Score=106.96 Aligned_cols=55 Identities=5% Similarity=0.041 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
+..++.+|+..|+..|+ .++||+..++++||.++||++.+|||||||||+|.++-
T Consensus 7 ~~~p~~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYA----LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 34567999999999999 99999999999999999999999999999999998864
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.48 E-value=3.2e-15 Score=109.12 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
-|.+|+..|+..|. +++||+..++++||..+||++.+|+|||||+|+|+|+
T Consensus 11 ~~~~Ql~~LE~~F~----~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFL----QSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHH----GGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 47899999999999 9999999999999999999999999999999999985
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=1.3e-14 Score=105.02 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 179 AEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 179 ~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+|+..|+.+|.+ .++||+...+.+||.+|||++++|||||||||+|+|+-
T Consensus 9 ~~~~~~LE~~F~~---~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTA---ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHT---TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHH---cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 3589999999941 68899999999999999999999999999999999863
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.38 E-value=3.5e-14 Score=122.03 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhC---------------------CCCCceeeeccccc
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETG---------------------VKRHVLKVWMHNNK 226 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eig---------------------l~~~vVKVWFQNrR 226 (233)
.++||.||.||..|+..|+..|+ +++||+...|++||..++ |++.+|+|||||||
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~----~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYE----RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHH----HHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 56789999999999999999999 999999999999999999 99999999999999
Q ss_pred cccCCC
Q 043261 227 HTLGKK 232 (233)
Q Consensus 227 aK~kKK 232 (233)
++.+.|
T Consensus 189 ~~~k~~ 194 (194)
T 1ic8_A 189 KEEAFR 194 (194)
T ss_dssp HHCC--
T ss_pred hhhhcC
Confidence 998865
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.7e-13 Score=97.61 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.||.+|+..|+..|. .-+.++||+..++++||.++||++.+|+|||||+|+|++|+
T Consensus 4 ~f~~~~~~~L~~~f~-~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLF-QHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHH-HTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHH-HhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 799999999999887 23568999999999999999999999999999999999875
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.25 E-value=1.5e-12 Score=114.13 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhC---------------------CCCCceeeeccccc
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETG---------------------VKRHVLKVWMHNNK 226 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eig---------------------l~~~vVKVWFQNrR 226 (233)
.++||.||+|+++|+..|+..|+ +++||+..+|++||.+++ |++.+|+|||||||
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~----~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYD----RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHH----HCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 56799999999999999999999 999999999999999988 88999999999999
Q ss_pred cccC
Q 043261 227 HTLG 230 (233)
Q Consensus 227 aK~k 230 (233)
+...
T Consensus 216 ~~~~ 219 (221)
T 2h8r_A 216 KEEA 219 (221)
T ss_dssp TTCC
T ss_pred hhhh
Confidence 8754
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.2e-12 Score=94.44 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccccccc
Q 043261 179 AEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTL 229 (233)
Q Consensus 179 ~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~ 229 (233)
.+|+..|+.+|. .+++|+..++.+||..+||+.+||||||||+|+..
T Consensus 14 k~ql~~Lk~yF~----~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYA----MNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHH----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 579999999999 99999999999999999999999999999999753
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=3e-12 Score=114.70 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.++.|+.|+.+|+..|+..|. .++||+..+|++||.++||++++|||||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~----~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFR----RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHH----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHh----cCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 467889999999999999999 999999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.99 E-value=4e-11 Score=91.90 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..|+.++++.|+..|.. -+.++||+..++++||.++||++.+|++||+|+|.|+++
T Consensus 10 ~~l~~~~~~iL~~W~~~-h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYE-HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-TSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 36899999999998871 123899999999999999999999999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.42 E-value=2.1e-08 Score=65.47 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=15.7
Q ss_pred CceeeeccccccccCCC
Q 043261 216 HVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 216 ~vVKVWFQNrRaK~kKK 232 (233)
++|+|||||||+||||+
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 47999999999999986
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.19 E-value=0.15 Score=37.39 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecc
Q 043261 183 EKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMH 223 (233)
Q Consensus 183 ~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQ 223 (233)
+.|+++|. .-+.+.+...+.||.+..|+-.+||-||-
T Consensus 19 e~L~~Yy~----~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWA----AHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHH----HTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHH----HhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 67999999 78889999999999999999999999994
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.67 E-value=0.27 Score=33.02 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQN 224 (233)
|.+||.+++..+..+++ . .......+.++|.++||+..+|.-|...
T Consensus 3 r~~ys~efK~~~~~~~~----~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR----N-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHH----H-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHH----c-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 45899999988865555 1 1111112668999999999999999753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.51 E-value=0.3 Score=35.31 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccc
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQN 224 (233)
+|+.+.+||.+++......++ -| ..+.++|+++||++.+|.-|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~-~g--------~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIH-DG--------ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHH-HT--------CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CC--------CCHHHHHHHHCcCHHHHHHHHHH
Confidence 455677999999877776665 12 13568899999999999999853
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=83.80 E-value=0.41 Score=36.18 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 172 RHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 172 R~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
+.|+.||.+++..+...+. ..... ...++|+++||++.+|.-|..+++
T Consensus 3 ~~r~~~t~e~K~~iv~~~~----~~g~~---~~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVE----ENPDL---RKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHH----HCTTS---CHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CcceeCCHHHHHHHHHHHH----HCCCC---cHHHHHHHhCCCHHHHHHHHhchh
Confidence 3578999999999988875 23222 234789999999999999987754
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.04 E-value=0.79 Score=27.81 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
.++.+++..+..++. .|+ ...++|..+||++.+|.-|.+..+
T Consensus 5 ~l~~~~~~~i~~~~~-~g~--------s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 578888877766665 122 356889999999999999986543
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.70 E-value=0.47 Score=29.48 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccc
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHT 228 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK 228 (233)
.++.+++..+..++. -| ....++|..+||++.+|.-|+.....+
T Consensus 5 ~~~~~~~~~i~~l~~-~g--------~s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KG--------HPRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp SSCTTHHHHHHHHHH-TT--------CCHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCCHHHHHHHHHHHH-cC--------CCHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 567778777776665 12 245688999999999999999765443
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=73.80 E-value=1.7 Score=31.35 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
|.+||.+++......+.. . ....+.++|.++||+..+|.-|....
T Consensus 3 r~~ys~e~k~~~v~~~~~----~---~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN----S---DGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT----G---GGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----c---CCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999887766641 1 01246789999999999999998543
No 86
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.94 E-value=1.6 Score=32.61 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
...+|+.|++.|.-+++ |+ ...++|..++|++.+|+.+.++-+.|+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34689999999987766 33 2378999999999999999887666654
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=65.84 E-value=4.6 Score=31.63 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCccCCCCHHHHHHHHH----Hh--CCCCCceeeecccc
Q 043261 171 KRHRTKFTAEQKEKMLGFA-EQLGWRIQKHDEASVEQFCA----ET--GVKRHVLKVWMHNN 225 (233)
Q Consensus 171 KR~RT~FT~eQ~~~L~~~f-eklGWr~~~pd~~~re~La~----ei--gl~~~vVKVWFQNr 225 (233)
++.|+.+|.+|+..|..++ + .+..... .+||. +. +|++.+|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~----~~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQ----LQNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHS----SSSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHH----hCCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999999 5 4444433 34455 77 88999998887654
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.46 E-value=1.2 Score=32.61 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+|..|++.|.-+++ |+ ...++|..+|++..+|+.+.++-+.|++.+
T Consensus 27 ~Lt~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL--------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 589999999987755 22 346899999999999999998888777654
No 89
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=64.14 E-value=0.91 Score=32.32 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+|..|++.|.-+++ | ....++|..+|++..+|+.+.++-+.|++.+
T Consensus 20 ~~Lt~~e~~vl~l~~~--g--------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G--------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T--------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3588999988876544 2 2456899999999999999998888777654
No 90
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=62.80 E-value=4.3 Score=29.61 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCC-HHHHHHHHHHhCCCCCceeeeccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHD-EASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd-~~~re~La~eigl~~~vVKVWFQN 224 (233)
|.+||.+++..+...+..-|+ .+.. ...+.++|.++||+..+|.-|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~--~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQG--EYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc--ccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 457999999887776541110 0111 146789999999999999999754
No 91
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=60.06 E-value=2.7 Score=29.07 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
|+.+++++.+.+..+.++|-...... ...+||..+||+...|.-|..+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 56788888777666554221111111 456899999999998888887654
No 92
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=58.43 E-value=2.3 Score=30.51 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+|+.|++.|.-+++ |+ ...++|..+|++..+|+.+.++-+.|++.+
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY--------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC--------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3588899999877655 32 234889999999999999998888887654
No 93
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.78 E-value=0.11 Score=41.98 Aligned_cols=30 Identities=13% Similarity=-0.028 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccCCCCH
Q 043261 168 GTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDE 201 (233)
Q Consensus 168 ~~kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~ 201 (233)
...||.||.||.+|++.|+..|+ .+++++.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~----~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQ----ANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCC----CCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHh----CCCCccc
Confidence 35689999999999999999999 8888764
No 94
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.81 E-value=0.42 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.++..|++.|.-.|- ......++|..+|++..+|+.+.+.-|.+++
T Consensus 37 ~L~~~~r~vl~l~~~---------~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY---------RGWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHT---------SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 466777777765332 1224568999999999999999887776654
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.18 E-value=2.1 Score=28.72 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
-..+|+.|++.|.-+++ |+ ...++|..+|++..+|+.++++-+.|++.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK--------TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34689999999877544 21 45689999999999999998876666554
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=54.12 E-value=1.7 Score=29.70 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.+|+.|++.|.-+++ |+ ...++|..+|++..+|+.++++-+.|++.+
T Consensus 16 ~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 367777777766433 22 346899999999999999998888877654
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.06 E-value=1.5 Score=29.74 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
.+++.|.+.|.-.|- -.. .......++|..+|+++.+|+.+.+.-+.|+++
T Consensus 5 ~L~~~er~il~l~~~----l~~-~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFG----IDM-NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTT----TTS-SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHc----cCC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888876551 000 122355789999999999999998877777665
No 98
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=51.21 E-value=5.6 Score=29.54 Aligned_cols=43 Identities=12% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
..+|.+++..+..++. .|| ...++|..+|+++.+|.-|++..+
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--------s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHccc
Confidence 4789999988888775 343 246889999999999999997543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.81 E-value=0.8 Score=30.55 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
.+++.|.+.+.-.|- ......++|..+|+++.+|+.|.+.-+.++++
T Consensus 15 ~L~~~~r~il~l~~~---------~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQL---------LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHT---------SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888866443 11245689999999999999998876666554
No 100
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=46.06 E-value=10 Score=29.34 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
..+|.+++..+..++. .|| ...++|+.+||++.+|.-|++..+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4789999988888775 343 345789999999999999997543
No 101
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=45.89 E-value=6.7 Score=27.90 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 170 KKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 170 kKR~RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++.|-..|+|.-+......++|| ........+.++-..-||+...|+.=.|.-|.+.+|-
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG--VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 366778899999999999999888 3334444555555556788888888888877776664
No 102
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.44 E-value=11 Score=28.78 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccc
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQN 224 (233)
..||.+++..+..++. .|| ...++|..+||+..+|.-|++.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~--------s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV--------RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3699999999888875 344 2457899999999999999864
No 103
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=45.08 E-value=4.5 Score=32.27 Aligned_cols=45 Identities=2% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
+++.|.+.|.- .|.......++|..+|++..+|+.+.+.-|.++|
T Consensus 199 L~~~~r~vl~l---------~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 199 LDERERLIVYL---------RYYKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred CCHHHHHHHHH---------HHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 55555555533 3334456779999999999999999987666653
No 104
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=44.87 E-value=6.7 Score=28.25 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccc
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQN 224 (233)
..+|.+++..+..++. .||. ..++|..+|++..+|.-|+..
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s--------~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIR--------PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHH
Confidence 3689999998888776 3432 457899999999999999864
No 105
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=44.01 E-value=51 Score=25.11 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHhCCCCC
Q 043261 173 HRTKFTAEQKEKMLGFAEQLGWR-IQKHDEASVEQFCAETGVKRH 216 (233)
Q Consensus 173 ~RT~FT~eQ~~~L~~~feklGWr-~~~pd~~~re~La~eigl~~~ 216 (233)
.|..+|++|++.|+..|..+--. .-+.+..+...+.+.+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45689999999999998743322 236777888888888887654
No 106
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=43.47 E-value=9.1 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 184 KMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 184 ~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
.|..+.++.||. ..+||..+|+++.+|.-|..+++
T Consensus 9 ~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 9 RIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcCCC
Confidence 444455544543 45788888888888888876644
No 107
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.38 E-value=4.5 Score=34.14 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
..+++.|++.|.-.++ | ....++|..+|++..+|++..++-|.|++.+
T Consensus 196 ~~L~~~erevl~L~~~--G--------~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--G--------LSSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--T--------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5799999999877654 2 2456899999999999999999988888765
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=42.73 E-value=10 Score=24.68 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccccc
Q 043261 184 KMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKH 227 (233)
Q Consensus 184 ~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRa 227 (233)
.|..+-++.||. ..+||..+||+..+|.-|..+++.
T Consensus 7 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 7 RLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 444455544443 457888888888888888776543
No 109
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=42.11 E-value=39 Score=22.32 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
.|.+||++|-+..- +.++..+|++...|.|.|+..
T Consensus 10 rt~eqK~~L~~~it--------------~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVERLT--------------SVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHHHH--------------HHHHHHhCcCcceEEEEEEEe
Confidence 57999998865332 377888999999999888654
No 110
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=41.01 E-value=1.9 Score=30.84 Aligned_cols=51 Identities=8% Similarity=0.013 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
.+++.|.+.+.-.|- -. .-......++|..+|+++.+|+.+.+.-+.|+++
T Consensus 18 ~L~~~er~vl~l~~~----l~-~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYG----LL-DGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHT----TT-TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHc----cC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 467888888765542 00 0022356789999999999999998877777664
No 111
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=40.42 E-value=11 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCcee-ee
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLK-VW 221 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVK-VW 221 (233)
.+|.+++.++.+.|.++.=.+-+.+..+...+-.+.+|+..++. ||
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 47999999999999976544456677777777778888877654 55
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.14 E-value=5.5 Score=29.01 Aligned_cols=47 Identities=6% Similarity=0.136 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
-..+|..|++.|.-+++ |+ ...++|..++|+..+|+....+-+.|+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34689999999987775 33 3568999999999999988877666554
No 113
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.04 E-value=10 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=28.4
Q ss_pred CCC--HHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecc
Q 043261 176 KFT--AEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMH 223 (233)
Q Consensus 176 ~FT--~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQ 223 (233)
.++ .++...+..++. -|+ ...++|..+|+++.+|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 466 777777766654 121 456889999999999998875
No 114
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=38.13 E-value=5 Score=27.51 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCCceeeeccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrR 226 (233)
..+||..+||+...|.-|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45788888888888888876554
No 115
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=36.71 E-value=3.3 Score=31.61 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+++.|.+.+.-.|. ......++|..+|+++.+|+.|.+.-|.+.+
T Consensus 22 ~L~~~~r~vl~l~y~---------~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA---------DDYSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHH---------TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 578888888876543 1124568999999999999999987766554
No 116
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=36.29 E-value=2.2 Score=33.19 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
.+++.|.+.| ...|.......++|..+|+++.+|+.+++.-|.++++
T Consensus 93 ~Lp~~~r~vl---------~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQAL---------LLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHH---------TTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHH---------HHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566677666 3455556677899999999999999999877777654
No 117
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=35.84 E-value=16 Score=23.56 Aligned_cols=24 Identities=4% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCCceeeecccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNKH 227 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrRa 227 (233)
..+||..+||+..+|.-|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457788888888888777766543
No 118
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.41 E-value=6.7 Score=32.48 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
...+|+.|++.|.-+++ |. ...++|..+++++++|+...+|-+.|+.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~--------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK--------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC--------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34699999999876655 21 3468899999999999999988777764
No 119
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.36 E-value=14 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=13.6
Q ss_pred HHHHHHhCCCCCceeeecccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNr 225 (233)
.+||..+|++..+|.-|..++
T Consensus 22 ~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 22 AALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 466777777766666666544
No 120
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.82 E-value=9.6 Score=31.27 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCC-HHHHHHHHHHhCCCCCceeeeccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHD-EASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd-~~~re~La~eigl~~~vVKVWFQN 224 (233)
|-.||.+++.....+..+ ++..+... ...+.++|.++||++.+|--|-..
T Consensus 21 ~r~yt~EfK~aAv~l~~~-~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVEN-ELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHH-HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHc-cccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 445999999998766541 11111110 236789999999999999999764
No 121
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=34.49 E-value=53 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
..|.+|++.|-+..- +.++..+|+++..|-|-|+..
T Consensus 13 grs~eqK~~l~~~lt--------------~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEGVS--------------DLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHHHH--------------HHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHHH--------------HHHHHHHCcCcccEEEEEEEe
Confidence 468999999865333 377889999999998877654
No 122
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=33.28 E-value=9.3 Score=23.94 Aligned_cols=14 Identities=43% Similarity=0.821 Sum_probs=11.0
Q ss_pred cccccccccccccc
Q 043261 79 LESLKCAACNCHRN 92 (233)
Q Consensus 79 ~~~l~caac~chrn 92 (233)
.-.|+|.|||-++.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 34799999997764
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=33.23 E-value=18 Score=23.53 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCCceeeecccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNr 225 (233)
..+||..+|++...|.-|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4577888888888877777654
No 124
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.47 E-value=18 Score=23.86 Aligned_cols=22 Identities=5% Similarity=0.250 Sum_probs=14.1
Q ss_pred HHHHHHhCCCCCceeeeccccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNrR 226 (233)
.+||..+||+..+|.-|..+++
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4667777777766666665543
No 125
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=32.13 E-value=55 Score=22.45 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
++|.+|+++|-+..- +.|...+|++...|-|.|...
T Consensus 11 rls~eqk~~L~~~l~--------------~~l~~~lgip~~~v~V~i~e~ 46 (76)
T 1gyx_A 11 ELDEQQKAALAADIT--------------DVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CCCHHHHHHHHHHHH--------------HHHHHHHTCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHHH--------------HHHHHHhCcCCceEEEEEEEe
Confidence 468999998865333 367888999999998888654
No 126
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=31.96 E-value=63 Score=20.75 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
.|.+|++.|.+..- +.|+..+|+++..|-|-|+..
T Consensus 12 ~s~eqk~~l~~~lt--------------~~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 12 RPPEKKRELVRRLT--------------EMASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHTTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHH--------------HHHHHHhCCCcccEEEEEEEc
Confidence 47899988765332 377888999999999877654
No 127
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.94 E-value=16 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.7
Q ss_pred HHHHHHhCCCCCceeeeccc
Q 043261 205 EQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQN 224 (233)
.+||..+||+..+|.-|..+
T Consensus 26 ~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHhC
Confidence 34455555555555444443
No 128
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=31.66 E-value=8.9 Score=31.35 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCCceeeeccccc
Q 043261 203 SVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 203 ~re~La~eigl~~~vVKVWFQNrR 226 (233)
...+||..+|++..+|.-|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456899999999999999997654
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.08 E-value=2.4 Score=31.88 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+++.|.+.|..+++ .....++|..+|++..+|+.+.+.-|.++|
T Consensus 109 ~L~~~~r~v~~~~~~----------g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIR----------GYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHHHHTT----------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHc----------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 466777777762222 225568999999999999999887666654
No 130
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.05 E-value=2.5 Score=28.98 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+++.|.+.+.-.|- . .........++|..+|+++.+|+.|...-+.+++
T Consensus 10 ~L~~~er~il~l~~~----l-~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKG----L-IDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHT----T-TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh----c-ccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578888888876552 0 0001234568999999999999998876666554
No 131
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=30.72 E-value=61 Score=23.45 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQN 224 (233)
|.|||+.|-+- .-+..+..||.+...|+||.+.
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE 44 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVE 44 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEE
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeee
Confidence 68999988532 3457799999999999999864
No 132
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.84 E-value=20 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCCceeeecccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNr 225 (233)
.+||..+||+..+|.-|..++
T Consensus 35 ~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 345555555555555555433
No 133
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=29.67 E-value=15 Score=29.64 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=12.2
Q ss_pred ccccccccccccccc
Q 043261 79 LESLKCAACNCHRNF 93 (233)
Q Consensus 79 ~~~l~caac~chrnf 93 (233)
.-.|+|.|||.+|..
T Consensus 121 ~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 121 ISLLKCEACGAKAPL 135 (138)
T ss_dssp TTEEECSTTSCCCCS
T ss_pred eEEEEccCCCCCccc
Confidence 457999999998864
No 134
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=29.55 E-value=8.2 Score=31.89 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
...+|+.|++.|.-+++ .....++|..+++++.+|+...+|-+.|+.
T Consensus 171 ~~~Lt~~e~~vl~~~~~----------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV----------GKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT----------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc----------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45799999999865444 224568899999999999999988777764
No 135
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=29.24 E-value=19 Score=23.62 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHhCCCC
Q 043261 199 HDEASVEQFCAETGVKR 215 (233)
Q Consensus 199 pd~~~re~La~eigl~~ 215 (233)
++......||..+|++.
T Consensus 50 ~~~~~l~~ia~~l~~~~ 66 (76)
T 3bs3_A 50 PSLDMLVKVAELLNVDP 66 (76)
T ss_dssp CCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 45555556666666544
No 136
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.17 E-value=33 Score=23.56 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCCceeeeccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrR 226 (233)
..+||..+||+..+|.-|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46788888988888888886643
No 137
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.08 E-value=24 Score=24.85 Aligned_cols=29 Identities=31% Similarity=0.662 Sum_probs=20.3
Q ss_pred ccccccccccccCCCCCccccccccc--ccccccccc
Q 043261 62 HAVDGCGEFMAAGDEGTLESLKCAAC--NCHRNFHRK 96 (233)
Q Consensus 62 ~~~dgc~ef~~~~~~~~~~~l~caac--~chrnfhr~ 96 (233)
..=|=|++|| .. ..|+|..| .||+-=+.+
T Consensus 36 t~C~~C~~~l--~~----qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 36 GWCDLCGREV--LR----QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CBCTTTSSBC--SS----CCEECTTSSCEECTGGGGG
T ss_pred cchhhhhHHH--Hh----CcCccCCCCCeechhhhcc
Confidence 4457899999 33 46999998 566654443
No 138
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.94 E-value=21 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=11.7
Q ss_pred HHHHHHhCCCCCceeeecccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNr 225 (233)
.+||..+||+..+|.-|..++
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 355666666666555555443
No 139
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.85 E-value=23 Score=23.73 Aligned_cols=36 Identities=3% Similarity=0.040 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 183 EKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 183 ~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
+.|..+.++.||. ..+||..+||+...|.-|..+++
T Consensus 13 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKEASLS--------QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCC
Confidence 3444555544543 45788889988888888886654
No 140
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.93 E-value=5.6 Score=25.80 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCCceeeeccccccccCCC
Q 043261 205 EQFCAETGVKRHVLKVWMHNNKHTLGKK 232 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNrRaK~kKK 232 (233)
.++|..+|+++.+|+.+.++-+.|++.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 5889999999999999988777776543
No 141
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=27.90 E-value=19 Score=24.38 Aligned_cols=24 Identities=38% Similarity=0.854 Sum_probs=17.0
Q ss_pred cccccccccccCCCCCccccccccc--ccccc
Q 043261 63 AVDGCGEFMAAGDEGTLESLKCAAC--NCHRN 92 (233)
Q Consensus 63 ~~dgc~ef~~~~~~~~~~~l~caac--~chrn 92 (233)
.=|=|++|| .. ..|+|..| .||+-
T Consensus 24 ~C~~C~~~i--~k----qg~kC~~C~~~cH~k 49 (59)
T 1rfh_A 24 WCDLCGREV--LR----QALRCANCKFTCHSE 49 (59)
T ss_dssp ECTTTCSEE--CS----CCEECTTTSCEECHH
T ss_pred Echhcchhh--hh----CccEeCCCCCeEehh
Confidence 357799999 33 46999998 45543
No 142
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.82 E-value=2.3 Score=32.29 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+++.|.+.+.-.|. ......++|..+|+++.+|+.+++.-|.+.+
T Consensus 25 ~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYL---------EDYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHT---------SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 366777776655432 1224568999999999999999887666554
No 143
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.82 E-value=17 Score=29.26 Aligned_cols=50 Identities=6% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHh-----CCCCCceeeeccccccccC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAET-----GVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~ei-----gl~~~vVKVWFQNrRaK~k 230 (233)
..+|..+.+.|.-+++ .......+++|+.++ +++.++|++...|=|.|+.
T Consensus 152 ~~LT~rE~~vL~~l~~------~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 152 ISLTPLEFDLLVALAR------KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp ECCCHHHHHHHHHHHH------STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHH------CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 3599999999988888 222234667888888 8888888888877777764
No 144
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=27.62 E-value=6.7 Score=30.48 Aligned_cols=7 Identities=71% Similarity=1.516 Sum_probs=5.1
Q ss_pred eeeeccc
Q 043261 218 LKVWMHN 224 (233)
Q Consensus 218 VKVWFQN 224 (233)
|||||||
T Consensus 54 vkvwmqn 60 (127)
T 2jpf_A 54 VKVWMQN 60 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5777777
No 145
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=27.22 E-value=22 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCCceeeeccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrR 226 (233)
..+||..+||+..+|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35778888888887777776543
No 146
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=26.92 E-value=17 Score=28.61 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhC---CCCCceeeeccccccccC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETG---VKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eig---l~~~vVKVWFQNrRaK~k 230 (233)
..+|..+.+.|.-+++ .......+++++..+. ++.++|++...|=|.|+.
T Consensus 144 ~~Lt~rE~~vl~~l~~------~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAE------NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCCHHHHHHHHHHHH------TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred EecCHHHHHHHHHHHH------CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 4589999999988887 2333356788999999 999999998888777765
No 147
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=26.87 E-value=78 Score=20.06 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
|.+|+++|-+..- +.|...+|++...|-|-|+..
T Consensus 12 s~e~k~~l~~~i~--------------~~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 12 TDEQKETLIRQVS--------------EAMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHTCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCcCcccEEEEEEEe
Confidence 7899988865332 367788999999988877643
No 148
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.80 E-value=74 Score=22.83 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC-ccCCCCHHHHHHHHHHhCC--CCCceeeec
Q 043261 173 HRTKFTAEQKEKMLGFAEQLGW-RIQKHDEASVEQFCAETGV--KRHVLKVWM 222 (233)
Q Consensus 173 ~RT~FT~eQ~~~L~~~feklGW-r~~~pd~~~re~La~eigl--~~~vVKVWF 222 (233)
....+|.+|++.|+..|..+-- .+-+.+..+...+.+.+|+ +...|+-+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4457899999999998875432 2346788888888888875 445555555
No 149
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=26.30 E-value=14 Score=31.55 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
...+|+.|++.|.-+++ |. ...++|..+++++++|+..+.|-+.|+.-
T Consensus 195 ~~~Lt~re~~vl~~~~~--G~--------s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR--GK--------TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHHT--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 35799999999887755 22 34689999999999999999888777653
No 150
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.72 E-value=97 Score=22.52 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
|.|||++|-+.+. ..|++-+|.+...|+|-|..-
T Consensus 14 T~EQKralaeE~T--------------~if~evLGcpPgsV~IVi~EV 47 (72)
T 3mb2_B 14 DRTRKQAFAAEAS--------------AIFQRVIGTPPGRLQLIIQIV 47 (72)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHCCCTTCCEEEEEEC
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCCCCCcEEEEEEec
Confidence 6899999876655 378999999999999988643
No 151
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.12 E-value=3 Score=32.60 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 203 SVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 203 ~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
...++|..+|+++.+|+.+.+.-|.++|+
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998877666543
No 152
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=24.86 E-value=82 Score=22.97 Aligned_cols=35 Identities=3% Similarity=-0.002 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
|.+|+++|-+..- +.|...+|++...|-|.|....
T Consensus 69 ~~eqk~~l~~~i~--------------~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 69 GGPQNKSYTKLLC--------------DILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp SHHHHHHHHHHHH--------------HHHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCcCcceEEEEEEECC
Confidence 6899988865333 3788899999999999987653
No 153
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.21 E-value=86 Score=22.71 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
|.+|+++|-+..- +.|...+|++...|-|.|+...
T Consensus 68 ~~eqk~~l~~~i~--------------~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 68 EPSRNRDHSAKLF--------------DHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp SHHHHHHHHHHHH--------------HHHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCcCcCeEEEEEEECC
Confidence 6899988865333 3788999999999999987653
No 154
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.14 E-value=22 Score=29.01 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=12.7
Q ss_pred cccccccccccccccc
Q 043261 79 LESLKCAACNCHRNFH 94 (233)
Q Consensus 79 ~~~l~caac~chrnfh 94 (233)
.-.|+|.|||..|.-.
T Consensus 123 ~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 123 FHFLKCEACGAETPIQ 138 (148)
T ss_dssp SBCCCCSSSCCCCCCC
T ss_pred EEEEEecCCCCCcccc
Confidence 4589999999887653
No 155
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.93 E-value=71 Score=24.79 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHhCCCCC
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWR-IQKHDEASVEQFCAETGVKRH 216 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr-~~~pd~~~re~La~eigl~~~ 216 (233)
++.||++|++.|+..|..+--. +-+.+..+...+.+.+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 4678999999999988743221 225677777777888877654
No 156
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.81 E-value=1e+02 Score=20.68 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
.|.+|++.|-+..- +.++..+|+++..|-|-|...
T Consensus 12 rs~eqK~~L~~~it--------------~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELARALS--------------AAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHH--------------HHHHHHhCCCcccEEEEEEEc
Confidence 47999998865433 377888999999888877653
No 157
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=23.77 E-value=26 Score=21.87 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=9.4
Q ss_pred Cccccccccccc
Q 043261 78 TLESLKCAACNC 89 (233)
Q Consensus 78 ~~~~l~caac~c 89 (233)
..++++|.||.-
T Consensus 18 ~~~~~kC~aCet 29 (34)
T 3gj5_B 18 KADSTKCIACES 29 (34)
T ss_dssp CSSCSBCTTTCC
T ss_pred ccccCEEcccCC
Confidence 357899999963
No 158
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=23.74 E-value=68 Score=25.08 Aligned_cols=25 Identities=12% Similarity=0.457 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCceeeeccccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNKHT 228 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrRaK 228 (233)
.+.++.++|++...++.|.=.+|+.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~RqN 96 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARSN 96 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCBT
T ss_pred HHHHHHHhCCCcccEEEEEeecCCC
Confidence 4588999999999999997666654
No 159
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.69 E-value=35 Score=21.83 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=17.8
Q ss_pred cccccccccccCCCCCcccccccccc--cccccccc
Q 043261 63 AVDGCGEFMAAGDEGTLESLKCAACN--CHRNFHRK 96 (233)
Q Consensus 63 ~~dgc~ef~~~~~~~~~~~l~caac~--chrnfhr~ 96 (233)
.=|=|++||- ..|+|..|+ ||+.-+.+
T Consensus 16 ~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 16 FCDICQKFLL-------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp ECTTSSSEEC-------SEEECTTTTCCBCSTTSSS
T ss_pred CCCCcccccc-------cCCEeCCCCCeEChhHHhh
Confidence 3467899886 469999885 45444433
No 160
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=23.60 E-value=18 Score=28.99 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..+|..+.+.|.-+.+ | ...+++|.++++++++|++...|=|.|+.-
T Consensus 148 ~~LT~rE~~vL~~l~~--g--------~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSE--G--------LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHHT--T--------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHC--C--------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 4689999998887776 2 245789999999999999998887777643
No 161
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.44 E-value=1e+02 Score=19.51 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeecccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNr 225 (233)
|.+|+++|-+..- +.|+..+|++...|-|-|+..
T Consensus 12 s~eqk~~l~~~i~--------------~~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 12 TDEQKRNLVEKVT--------------EAVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCcCcCeEEEEEEEc
Confidence 7899988855332 367888999999988877654
No 162
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.39 E-value=13 Score=28.43 Aligned_cols=39 Identities=8% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 183 EKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 183 ~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
+...++|.+-| .+...+.++|++.||++.+|--+|.|+-
T Consensus 38 ~aa~~l~~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 38 KVATELFREKG-----YYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHTC-----TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHcC-----cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33444566333 2344678999999999999999998763
No 163
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=23.24 E-value=77 Score=21.57 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 043261 169 TKKRHRTKFTAEQKEKMLGFAEQLG 193 (233)
Q Consensus 169 ~kKR~RT~FT~eQ~~~L~~~feklG 193 (233)
.+++.|..||.+.-+.|..+.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4577888999999999999999766
No 164
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.21 E-value=27 Score=24.30 Aligned_cols=21 Identities=5% Similarity=0.147 Sum_probs=11.6
Q ss_pred HHHHHHhCCCCCceeeecccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNr 225 (233)
.+||..+||++.+|.-|..++
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 25 REFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 455556666655555555443
No 165
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=23.20 E-value=93 Score=22.93 Aligned_cols=35 Identities=3% Similarity=-0.036 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 178 TAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 178 T~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
|.+|+++|-+..- +.|...+|++...|-|-|+...
T Consensus 69 ~~eqk~~l~~~i~--------------~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 69 SADDNIRHTQKIT--------------QFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCcCcccEEEEEEECC
Confidence 6899988865333 3788899999999999987653
No 166
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.09 E-value=22 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=12.8
Q ss_pred cccccccccccccccc
Q 043261 79 LESLKCAACNCHRNFH 94 (233)
Q Consensus 79 ~~~l~caac~chrnfh 94 (233)
.-.|+|.|||.+|.-.
T Consensus 117 ~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 117 TIGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEEETTTCCCCCSC
T ss_pred EEEEEccccCCccccc
Confidence 4579999999988654
No 167
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=22.81 E-value=42 Score=22.58 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
..|+.+.+..+. +++|| ..++||..+||+..+|.-|=.+++
T Consensus 9 ~~~~g~~lr~~R---~~~gl--------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVR---KKLSL--------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHH---HHTTC--------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHH---HHcCC--------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 478888877775 33344 356899999999999999987654
No 168
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.48 E-value=21 Score=29.40 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.1
Q ss_pred cccccccccccccccc
Q 043261 79 LESLKCAACNCHRNFH 94 (233)
Q Consensus 79 ~~~l~caac~chrnfh 94 (233)
.-.|+|.|||.+|...
T Consensus 124 ~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 124 TIGNSCKACGYRGMLD 139 (157)
T ss_dssp EEEEECSSSCCEEECC
T ss_pred EEEEEccCCCCCCccc
Confidence 4579999999988765
No 169
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.28 E-value=18 Score=28.76 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 184 KMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 184 ~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
.-.++|.+-|| +.....+||++.||++..|--.|.|+-
T Consensus 52 aA~~lf~e~G~-----~~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 52 TAENLLEDRPL-----ADISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHSCG-----GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHcCc-----ccCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 33345553343 334678999999999999999998763
No 170
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.12 E-value=57 Score=24.98 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCHHHHH-HHHHH------hCCCCCceeeeccccccc
Q 043261 174 RTKFTAEQKEKMLGFAEQLGWRIQKHDEASVE-QFCAE------TGVKRHVLKVWMHNNKHT 228 (233)
Q Consensus 174 RT~FT~eQ~~~L~~~feklGWr~~~pd~~~re-~La~e------igl~~~vVKVWFQNrRaK 228 (233)
+.+++.++++.+.++.. .++.....+.. .|..+ +.++..+|.-|++..+..
T Consensus 81 ~~~~~~~~~~~I~~~~~----~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKR----QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCTTHHHHHHHHHH----HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHH----HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 45678888888888776 34434433332 23221 247778888888765543
No 171
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.07 E-value=15 Score=25.99 Aligned_cols=39 Identities=13% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCcee
Q 043261 177 FTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLK 219 (233)
Q Consensus 177 FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVK 219 (233)
++.++-+++..+.. .+.-.+.....+||.++||++.+|+
T Consensus 11 ~~~~~~~~IL~~L~----~~~~~~~~t~~eLA~~Lgvs~~tV~ 49 (77)
T 1qgp_A 11 IYQDQEQRILKFLE----ELGEGKATTAHDLSGKLGTPKKEIN 49 (77)
T ss_dssp HHHHHHHHHHHHHH----HHCSSSCEEHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHHHH----HcCCCCCcCHHHHHHHHCcCHHHHH
Confidence 45566566666666 4443334466789999999988765
No 172
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=21.97 E-value=41 Score=23.37 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCCceeeeccc
Q 043261 205 EQFCAETGVKRHVLKVWMHN 224 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQN 224 (233)
.+||..+||+..+|.-|..+
T Consensus 21 ~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 21 QQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HHHHHHHCCCHHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 34555555555555555544
No 173
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=21.93 E-value=4 Score=32.67 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccC
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLG 230 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~k 230 (233)
.+++.|.+.|.-.|- ......++|..+|+++.+|+.+.+.-|.++|
T Consensus 187 ~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh---------cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 356666666655432 2234568999999999999999887666654
No 174
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=21.72 E-value=30 Score=21.39 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 043261 78 TLESLKCAACN 88 (233)
Q Consensus 78 ~~~~l~caac~ 88 (233)
.+++++|.||.
T Consensus 18 ~~~~~kC~aC~ 28 (33)
T 3gj3_B 18 KPEAVKCVACE 28 (33)
T ss_dssp CTTCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 35799999996
No 175
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.18 E-value=33 Score=24.73 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHhCCCCCc
Q 043261 198 KHDEASVEQFCAETGVKRHV 217 (233)
Q Consensus 198 ~pd~~~re~La~eigl~~~v 217 (233)
.++......||..++++...
T Consensus 62 ~~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 62 NVSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp CCCHHHHHHHHHHHTCCGGG
T ss_pred CcCHHHHHHHHHHHCcCHHH
Confidence 35556666666666665443
No 176
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.12 E-value=17 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCceeeeccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrR 226 (233)
..+||..+|++..+|.-|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999987654
No 177
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=21.06 E-value=36 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCCCceeeecccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNr 225 (233)
..+||..+||+...|.-|..++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~ 49 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNP 49 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCG
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 3567777777777777776553
No 178
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.00 E-value=26 Score=27.16 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHhCCCCCceeeecccc
Q 043261 200 DEASVEQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 200 d~~~re~La~eigl~~~vVKVWFQNr 225 (233)
+...++++|++.||++.+|-..|.|+
T Consensus 47 ~~~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred hhccHHHHHHHcCCCcchHHHhCCCH
Confidence 34567799999999999999999876
No 179
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.66 E-value=76 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 183 EKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 183 ~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
+.-.++|.+-|+. .....++|++.||++.+|--.|.|+.
T Consensus 19 ~aA~~lf~~~G~~-----~~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 19 ARAESTLEKDGVD-----GLSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHCGG-----GCCHHHHHHHTC-----CCCSSSSHH
T ss_pred HHHHHHHHhcChh-----hhhHHHHHHHhCCChHHHHHHhCCHH
Confidence 3344456644433 34677899999999999999998863
No 180
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.48 E-value=32 Score=23.12 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=13.7
Q ss_pred HHHHHHhCCCCCceeeecccc
Q 043261 205 EQFCAETGVKRHVLKVWMHNN 225 (233)
Q Consensus 205 e~La~eigl~~~vVKVWFQNr 225 (233)
.+||..+||+...|.-|-.++
T Consensus 31 ~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 466777777776666666554
No 181
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.46 E-value=51 Score=24.51 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccc
Q 043261 176 KFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 176 ~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrR 226 (233)
.++.+++..|. +++||. ..+||..+|++..+|.-|-.+++
T Consensus 70 ~~~~~~l~~~R---~~~gls--------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVR---KKLSLT--------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHH---HHTTCC--------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHH---HHcCCC--------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45666655554 444443 45899999999999999987654
No 182
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.26 E-value=25 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCCceeeeccccc
Q 043261 204 VEQFCAETGVKRHVLKVWMHNNK 226 (233)
Q Consensus 204 re~La~eigl~~~vVKVWFQNrR 226 (233)
..++|..|||+..+|.-|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 46889999999999999998765
No 183
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.12 E-value=22 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHhCCCCCceeeeccccccccCC
Q 043261 175 TKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGK 231 (233)
Q Consensus 175 T~FT~eQ~~~L~~~feklGWr~~~pd~~~re~La~eigl~~~vVKVWFQNrRaK~kK 231 (233)
..+|..+.+.|.-+++ |. .++++|.++++++++|++...|=|.|+.-
T Consensus 153 ~~Lt~rE~~vl~~l~~--g~--------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQ--GL--------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3589999998887777 21 36789999999999999988887777653
No 184
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=20.04 E-value=31 Score=27.70 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=6.6
Q ss_pred ccccccccccccccc
Q 043261 79 LESLKCAACNCHRNF 93 (233)
Q Consensus 79 ~~~l~caac~chrnf 93 (233)
.-.|+|.|||.+|.-
T Consensus 122 ~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 122 SWYIVCLACGAQTPV 136 (139)
T ss_dssp TTTSSCCC-------
T ss_pred eEEEEecCCCCCCcc
Confidence 457999999988753
Done!