BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043263
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
           Monophosphate Kinase
 pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
           Monophosphate Kinase
 pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
           Monophosphate Kinase
 pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
           Monophosphate Kinase
          Length = 207

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 127/191 (66%), Gaps = 5/191 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           L+IV+SGPSGVGK TV K++ E    S  + ++ T+R MR GEV+G DYFF +++ F  +
Sbjct: 7   LLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL 66

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +  ++ +EYA   G+Y G P + +++ M +G+D+ L ++++GA+ +R+   D A+F+FLA
Sbjct: 67  IKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFLA 125

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L ERLV R TE+ E++  RI  AR+EV+ +  +DYVVVN E +L  A   ++ +
Sbjct: 126 PPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVEL--AKNRIQCI 183

Query: 272 IDAEKAKVRQR 282
           ++AE  K R+R
Sbjct: 184 VEAEHLK-RER 193


>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
           Tuberculosis (Rv1389)
          Length = 228

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 121/205 (59%), Gaps = 8/205 (3%)

Query: 73  LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           +  S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R 
Sbjct: 1   MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA 60

Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVL 187
            RPGEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++
Sbjct: 61  PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120

Query: 188 RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV 247
            VD+ GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+   
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ 179

Query: 248 KNFDYVVVNAEGKLDSAVKLVESVI 272
            +FD VVVN   +L+SA   + S++
Sbjct: 180 GDFDKVVVNR--RLESACAELVSLL 202


>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
           Tuberculosis Guanylate Kinase
 pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
           Kinase In Complex With Gmp
 pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
           Kinase In Complex With Gdp
 pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
           Tuberculosis Guanylate Kinase In Complex With Gdp
          Length = 207

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 8/202 (3%)

Query: 76  SLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132
           S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R  RP
Sbjct: 1   SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60

Query: 133 GEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVLRVD 190
           GEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++ VD
Sbjct: 61  GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120

Query: 191 IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250
           + GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+    +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179

Query: 251 DYVVVNAEGKLDSAVKLVESVI 272
           D VVVN   +L+SA   + S++
Sbjct: 180 DKVVVNR--RLESACAELVSLL 199


>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
           Mycobacterium Tuberculosis (Rv1389)
          Length = 228

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 120/205 (58%), Gaps = 8/205 (3%)

Query: 73  LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           +  S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R 
Sbjct: 1   MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRC 60

Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVL 187
            RPGEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++
Sbjct: 61  PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120

Query: 188 RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV 247
            VD+ GAR +++ + + AV VFLA  S   L  RL+ R  E  + +  R+ TAR E+   
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQ 179

Query: 248 KNFDYVVVNAEGKLDSAVKLVESVI 272
            +FD VVVN   +L+SA   + S++
Sbjct: 180 GDFDKVVVNR--RLESACAELVSLL 202


>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
           And Its Substrate Gmp At 2.0 Angstroms Resolution
          Length = 187

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 5/185 (2%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 5   IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 64

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 65  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 124

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 182

Query: 272 IDAEK 276
           I AEK
Sbjct: 183 IFAEK 187


>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
           From Yeast
 pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
           From Yeast
 pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
           With Guanosine-5'-Monophosphate
          Length = 186

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 5/185 (2%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 4   IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 64  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181

Query: 272 IDAEK 276
           I AEK
Sbjct: 182 IFAEK 186


>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
           Spindle Orienting Protein By A Single Mutation That
           Inhibits Gmp- Induced Closing
 pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
           Spindle Orienting Protein By A Single Mutation That
           Inhibits Gmp- Induced Closing
          Length = 202

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V +T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 20  IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 79

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 80  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 139

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 140 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 197

Query: 272 IDAEK 276
           I AEK
Sbjct: 198 IFAEK 202


>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
           Phagocytophilum
 pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
           Phagocytophilum
          Length = 231

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 112/188 (59%), Gaps = 3/188 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           +I+V+S PSG GK TV  KL E  ++++   V+ T+R  R GE  GKDY+FV +EEFL++
Sbjct: 28  VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
               E++E+A V+G++ G+P+K + + + KG   +L +D QGA     ++ +  V +F+ 
Sbjct: 88  CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L  RL  R+ ++ E +  R+  A  E+ H + +DYV+VN +  ++     + ++
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205

Query: 272 IDAEKAKV 279
           + AE+ K 
Sbjct: 206 LRAEQMKT 213


>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
          Length = 205

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 106/183 (57%), Gaps = 3/183 (1%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           + +IS PSG GK ++++ L ++   +   ++ T+RP RPG+  G DYFF+ +  F   V 
Sbjct: 9   LFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAXVK 68

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
           +   LE+A +Y  + G  K  +   +  G D++L +D QGAR +R +    A+ +F+   
Sbjct: 69  EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFP-PALSIFILPP 127

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273
           S  AL ERL++R+ ++   +  R+A AREE  H K FDY+VVN     D AV+ +  +I 
Sbjct: 128 SIEALRERLIKRRQDDTAIIEQRLALAREEXAHYKEFDYLVVN--DNFDQAVQNLIHIIS 185

Query: 274 AEK 276
           AE+
Sbjct: 186 AER 188


>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
           Complex With Gdp
 pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
           Complex With Gdp
 pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
           Complex With Gmp
 pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
           Guanylate Kinase
 pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ap5g
 pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ap5g
 pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
 pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
 pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
 pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
 pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
 pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
           With Ganciclovir Monophosphate
          Length = 207

 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           + ++S PSG GK ++I+ L +++        V+ T+R  RPGEV+G+ YFFV+ +EF +M
Sbjct: 6   LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 65

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+ +   A  +F+ 
Sbjct: 66  ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM-PHARSIFIL 124

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S++ L  RL  R  ++ E +  R+A A  E+ H   +DY++VN +   D+A+  ++++
Sbjct: 125 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKTI 182

Query: 272 IDAEKAKV-RQR 282
           I AE+ ++ RQ+
Sbjct: 183 IRAERLRMSRQK 194


>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
 pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
          Length = 219

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 111/185 (60%), Gaps = 5/185 (2%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           + ++S PSG GK ++I+ L +++        V+ T+R  RPGEV+G+ YFFV+ +EF + 
Sbjct: 18  LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEX 77

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+     A  +F+ 
Sbjct: 78  ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKX-PHARSIFIL 136

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S++ L  RL  R  ++ E +  R A A  E  H   +DY++VN +   D+A+  ++++
Sbjct: 137 PPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDD--FDTALTDLKTI 194

Query: 272 IDAEK 276
           I AE+
Sbjct: 195 IRAER 199


>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
           With Gmp And Adp
          Length = 198

 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
            P  +V+SGPSG GK T++KKL +   S+  F V+ T+R  RPGE +GKDY+FV++E   
Sbjct: 3   GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 62

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
           + +   + +E+A   G+  G  K+ +R   A     VL VD+QG R++++      +++F
Sbjct: 63  RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIF 121

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN---FDYVVVNAEGKLDSAVK 266
           +   S   L +RL  R TE  E L  R+A AR +++  K    FD V++N +  LD A  
Sbjct: 122 VQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYA 179

Query: 267 LVESVIDAEKAKVR 280
            ++  +  E  K +
Sbjct: 180 TLKQALSEEIKKAQ 193


>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
           Kinase From Listeria Monocytogenes Egd-E
 pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
           Kinase From Listeria Monocytogenes Egd-E
          Length = 208

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           L+IV+SGPSGVGK TV + + ++   S  + ++ T+R  R GE +G DY+F S+E F Q 
Sbjct: 9   LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQA 68

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +   + LEYA   G+Y G P + + E +A G DI L +++QGA  +R+   +  +F+FL 
Sbjct: 69  IKDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPE-GIFIFLT 127

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDY 252
                 L  R++ R TE+ E +  R  TA++E++   ++DY
Sbjct: 128 PPDLSELKNRIIGRGTESXEVVEERXETAKKEIEXXASYDY 168


>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
           Falciparum
          Length = 218

 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +VI GPSGVGK T+IKKL  E  +  +F V+ T+R  R  E  G DY+F+ K  F   + 
Sbjct: 26  LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAVFVFLAA 212
             + LEY     ++ G  K +  +   +    +  ++I G + L++     +A+++F+  
Sbjct: 86  NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKP 145

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAE 258
            S   L+ RL+ R TEN+E++  R+     E+      NF+  ++N +
Sbjct: 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD 193


>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
          Length = 204

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 89  PPNPLIIVISGPSGVGKDTVIKK-LRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE 147
           PP    +V+ GPSGVGK T+IKK L E      F ++ T+R  R  E NG DY+FV K++
Sbjct: 13  PP----LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDD 68

Query: 148 FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAV 206
           F + + + + LE+     ++ G  K +    + +G   +   +I G + L+        +
Sbjct: 69  FERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGI 128

Query: 207 FVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAE 258
           ++F+   S   L+ RL  R TE  EE+  R      E        F+Y +VN +
Sbjct: 129 YIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTREXDEADKVGFNYFIVNDD 182


>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
           Human Cask
          Length = 180

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 23/186 (12%)

Query: 95  IVISGPSGVG----KDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           +V+ G  GVG    K+T+I K     D   + +  T+RP +  E NGK+Y+FVS ++ +Q
Sbjct: 8   LVLLGAHGVGRRHIKNTLITK---HPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVF-VF 209
            +  NE LEY        G   + IR+   +G   +L V+ Q  + LR    + A F VF
Sbjct: 65  DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLR--TAEFAPFVVF 122

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFDYVVVNAEGKLDSAVKL 267
           +AA +    +         N +E L R+    + +Q  +   FD  ++N E  +D  ++ 
Sbjct: 123 IAAPTITPGL---------NEDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRH 171

Query: 268 VESVID 273
           +E  ++
Sbjct: 172 LEEAVE 177


>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 95  IVISGPSGVGKDTVIKKLRESRDSLHFV--VTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           +V+ G SGVG+ + IK    S++   FV  V  T+RP R  E +GK+Y F+S EE  + +
Sbjct: 22  LVLIGASGVGR-SHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI 80

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             NE LE+    G+  G   + + +   +    +L ++ Q  + +R    + + F+   A
Sbjct: 81  SANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVR--TAELSPFIVFIA 138

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            ++          +TE  ++L       R +  H   FD  +VN    +D  +K ++   
Sbjct: 139 PTDQGT-------QTEALQQLQKDSEAIRSQYAHY--FDLSLVN--NGVDETLKKLQEAF 187

Query: 273 D 273
           D
Sbjct: 188 D 188


>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
          Length = 292

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           ++I GP    KD +   L  E  D     V  T+RP R  EV+G+DY FVS  E ++   
Sbjct: 103 VIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDI 159

Query: 154 KNELLEYALVYGD-YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL-- 210
           +N L   A  Y D   G     +RE   KG   +L V     + L ++     V VF+  
Sbjct: 160 QNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRL-QVAQLYPVAVFIKP 218

Query: 211 -AAESEMALVERLVERKTENREELLVRI 237
            + +S M +  R+ E + +   E  +++
Sbjct: 219 KSVDSVMEMNRRMTEEQAKKTYERAIKM 246


>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
           Psd-95
 pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
 pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
          Length = 301

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM-V 152
           I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS  E ++  +
Sbjct: 114 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 170

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
             ++ +E         G   + +RE   +G   +L V     R L+
Sbjct: 171 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQ 216


>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
          Length = 295

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM-V 152
           I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS  E ++  +
Sbjct: 108 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 164

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
             ++ +E         G   + +RE   +G   +L V     R L+
Sbjct: 165 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQ 210


>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
 pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
          Length = 721

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM-V 152
           I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS  E ++  +
Sbjct: 534 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 590

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
             ++ +E         G   + +RE   +G   +L V     R L+
Sbjct: 591 RAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQ 636


>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
           Proteins As Specific Phospho-Protein Binding Modules
          Length = 296

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMV 152
           ++I GP    KD V   L  E  D     V  T+RP R  EV+G+DY FV S+E+  + +
Sbjct: 109 VIILGPM---KDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDI 165

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL-- 210
            +++ +E         G   + +R    KG   +L V     + L +I     + +F+  
Sbjct: 166 QEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRL-QIAQLYPISIFIKP 224

Query: 211 -AAESEMALVERLVERKTENREELLVRI 237
            + E+ M + +RL + +     E  VR+
Sbjct: 225 KSMENIMEMNKRLTDEQARKTFERAVRL 252


>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
           Pseudotuberculosis
          Length = 252

 Score = 30.8 bits (68), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 94  IIVISGPSGVGKDTVIKKLRES 115
           +I + GPSG GK T+ K L ES
Sbjct: 29  VITVDGPSGAGKGTLCKALAES 50


>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
           Mycobacterium Abscessus
 pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
           Mycobacterium Abscessus
 pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
           Mycobacterium Abscessus Bound To
           Cytidine-5'-Monophosphate
 pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
           Mycobacterium Abscessus Bound To
           Cytidine-5'-Monophosphate
 pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
           Mycobacterium Abscessus Bound To
           Cytidine-5'-Monophosphate
 pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
           Mycobacterium Abscessus Bound To
           Cytidine-5'-Monophosphate
          Length = 228

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKL 112
           P  +++ + GPSG GK +V K+L
Sbjct: 2   PGSMVVAVDGPSGTGKSSVAKEL 24


>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
 pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
          Length = 306

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 81  FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
           FD+    PP  P +I++ G +G GK T   KL
Sbjct: 93  FDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKL 124


>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
           Bacillus Halodurans, Northeast Structural Genomics
           Target Bhr61
          Length = 189

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFV 122
           + +I+GP+GVGK T  K+L    D+  ++
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYI 32


>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
           Coli
 pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
           Coli Complexed With Dcmp
          Length = 227

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 94  IIVISGPSGVGKDTVIKKLRES 115
           +I I GPSG GK T+ K + E+
Sbjct: 7   VITIDGPSGAGKGTLCKAMAEA 28


>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
           Phosphate
 pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
           Cytidine Monophosphate
 pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
           Cytidine Monophosphate
 pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
           2'-Deoxy-Cytidine Monophosphate
 pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
           2'-Deoxy-Cytidine Monophosphate
 pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
           Ara-Cytidine Monophosphate
 pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
           Ara-Cytidine Monophosphate
 pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
           2',3'-Dideoxy-Cytidine Monophosphate
 pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
           2',3'-Dideoxy-Cytidine Monophosphate
          Length = 227

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 94  IIVISGPSGVGKDTVIKKLRES 115
           +I I GPSG GK T+ K + E+
Sbjct: 7   VITIDGPSGAGKGTLCKAMAEA 28


>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
          Length = 227

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 94  IIVISGPSGVGKDTVIKKLRES 115
           +I I GPSG GK T+ K + E+
Sbjct: 7   VITIDGPSGAGKGTLCKAMAEA 28


>pdb|3CZP|A Chain A, Crystal Structure Of Putative Polyphosphate Kinase 2 From
           Pseudomonas Aeruginosa Pa01
 pdb|3CZP|B Chain B, Crystal Structure Of Putative Polyphosphate Kinase 2 From
           Pseudomonas Aeruginosa Pa01
          Length = 500

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           P+II+I+G  G GK   +K L E  D     V +  RP
Sbjct: 43  PVIILINGIEGAGKGETVKLLNEWXDPRLIEVQSFLRP 80


>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
           Polaromonas Sp. Js666
 pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
           Polaromonas Sp. Js666
          Length = 428

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 7/38 (18%)

Query: 173 KQIREYMAKGYDIV-------LRVDIQGARTLRRILGD 203
           ++ +EY+A+GY  +        RVDI+  R +R++LGD
Sbjct: 191 EEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGD 228


>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
           Nop10 Complex
          Length = 357

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 216 MALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273
           M L+E+  E+K  ++EEL+V     +EEV+   N+DY     E K++  +K    V+D
Sbjct: 22  MILLEKTQEKKINDKEELIV-----KEEVE--TNWDYGCNPYERKIEDLIKYGVVVVD 72


>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
          Length = 302

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 93  LIIVISGPSGVGKDTVIKKL 112
            I +++GPSGVGK +++ +L
Sbjct: 166 FICILAGPSGVGKSSILSRL 185


>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
          Length = 242

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDY-------F 141
           P  +  V+ GP G GK T   +L E+    H       R M   G   GK          
Sbjct: 14  PKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 73

Query: 142 FVSKEEFLQMVDKNELLEYALVYGDY--KGIPK--------KQIREYMAKGYDIVLRVDI 191
            VS E  +++++KN  LE  L    +   G P+          + E   +  D V+   I
Sbjct: 74  LVSDEMVVELIEKN--LETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI 131

Query: 192 QGARTLRRILG 202
             +  +RRI G
Sbjct: 132 PDSLLIRRITG 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,589,132
Number of Sequences: 62578
Number of extensions: 301690
Number of successful extensions: 981
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 51
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)