Query 043263
Match_columns 286
No_of_seqs 306 out of 2206
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 3.9E-33 8.5E-38 220.8 21.6 183 91-277 3-185 (191)
2 PRK14737 gmk guanylate kinase; 100.0 8.9E-31 1.9E-35 214.1 21.3 182 91-274 3-184 (186)
3 KOG0058 Peptide exporter, ABC 100.0 1.7E-30 3.7E-35 241.3 5.4 189 63-272 461-693 (716)
4 smart00072 GuKc Guanylate kina 100.0 2.8E-26 6E-31 188.0 21.9 181 92-275 2-183 (184)
5 PF00625 Guanylate_kin: Guanyl 100.0 1.8E-26 3.8E-31 189.1 20.3 182 91-275 1-183 (183)
6 PRK14738 gmk guanylate kinase; 99.9 2.3E-25 5E-30 185.6 23.6 189 89-279 10-199 (206)
7 KOG0055 Multidrug/pheromone ex 99.9 5.7E-28 1.2E-32 236.1 4.5 187 63-270 983-1213(1228)
8 PLN02772 guanylate kinase 99.9 7.2E-25 1.6E-29 194.3 21.1 183 91-276 134-320 (398)
9 COG1125 OpuBA ABC-type proline 99.9 5E-27 1.1E-31 193.6 5.5 176 68-262 2-215 (309)
10 COG2274 SunT ABC-type bacterio 99.9 9.9E-28 2.2E-32 229.6 1.6 188 63-270 467-696 (709)
11 KOG0055 Multidrug/pheromone ex 99.9 3.4E-27 7.3E-32 230.8 3.3 229 5-263 298-567 (1228)
12 PRK00300 gmk guanylate kinase; 99.9 5.6E-24 1.2E-28 177.4 21.7 184 91-277 4-187 (205)
13 TIGR03263 guanyl_kin guanylate 99.9 1.2E-23 2.6E-28 171.8 21.2 179 92-273 1-179 (180)
14 KOG0056 Heavy metal exporter H 99.9 1.3E-26 2.8E-31 206.1 3.2 180 65-264 535-753 (790)
15 KOG0057 Mitochondrial Fe/S clu 99.9 2.9E-26 6.2E-31 206.8 2.1 184 65-270 349-574 (591)
16 COG1126 GlnQ ABC-type polar am 99.9 7.1E-26 1.5E-30 183.0 4.0 175 68-261 3-214 (240)
17 COG1132 MdlB ABC-type multidru 99.9 5.6E-26 1.2E-30 216.6 2.3 185 66-270 327-552 (567)
18 COG1120 FepC ABC-type cobalami 99.9 9.7E-26 2.1E-30 190.2 3.2 175 68-261 3-217 (258)
19 COG3839 MalK ABC-type sugar tr 99.9 1.2E-25 2.5E-30 196.7 0.9 178 68-264 4-215 (338)
20 COG1116 TauB ABC-type nitrate/ 99.9 2.4E-25 5.2E-30 184.6 0.5 172 68-259 4-207 (248)
21 COG3842 PotA ABC-type spermidi 99.9 2E-25 4.4E-30 196.2 -0.7 178 67-263 5-217 (352)
22 COG1127 Ttg2A ABC-type transpo 99.9 2.7E-24 5.9E-29 176.4 5.6 178 65-261 6-224 (263)
23 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.3E-25 9.4E-30 214.8 0.5 176 66-262 450-663 (686)
24 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 5E-25 1.1E-29 215.3 0.6 177 65-262 475-690 (710)
25 COG4987 CydC ABC-type transpor 99.9 2.4E-24 5.2E-29 194.3 4.8 176 67-263 336-552 (573)
26 PRK11174 cysteine/glutathione 99.9 7.1E-25 1.5E-29 210.0 1.2 175 67-262 349-562 (588)
27 COG1135 AbcC ABC-type metal io 99.9 1.4E-24 3.1E-29 184.0 2.4 175 68-261 2-220 (339)
28 PTZ00265 multidrug resistance 99.9 1.7E-24 3.7E-29 223.0 2.8 197 65-269 1163-1451(1466)
29 COG5265 ATM1 ABC-type transpor 99.9 2.4E-24 5.2E-29 188.9 3.1 180 65-264 260-478 (497)
30 TIGR01193 bacteriocin_ABC ABC- 99.9 2E-24 4.3E-29 210.9 1.5 178 65-262 471-687 (708)
31 PRK11176 lipid transporter ATP 99.9 1.9E-24 4.2E-29 206.8 1.2 177 66-262 340-557 (582)
32 COG4988 CydD ABC-type transpor 99.9 7.9E-24 1.7E-28 193.4 4.1 177 68-264 321-535 (559)
33 TIGR03375 type_I_sec_LssB type 99.9 2.1E-24 4.5E-29 210.4 -0.5 178 66-263 462-679 (694)
34 TIGR00958 3a01208 Conjugate Tr 99.9 3.5E-24 7.6E-29 208.8 0.2 178 65-263 476-693 (711)
35 COG1136 SalX ABC-type antimicr 99.9 1.3E-23 2.8E-28 174.0 3.0 172 69-260 3-219 (226)
36 PRK10790 putative multidrug tr 99.9 6.8E-24 1.5E-28 203.3 -0.1 177 66-262 339-553 (592)
37 COG3638 ABC-type phosphate/pho 99.9 4.2E-23 9.1E-28 169.0 4.5 189 67-274 3-245 (258)
38 COG2884 FtsE Predicted ATPase 99.9 8.6E-23 1.9E-27 161.7 5.6 175 68-261 2-215 (223)
39 PLN03232 ABC transporter C fam 99.9 6.4E-24 1.4E-28 220.1 -1.3 178 65-262 1232-1448(1495)
40 PRK11160 cysteine/glutathione 99.9 1.2E-23 2.7E-28 200.6 0.7 178 66-263 337-553 (574)
41 PLN03130 ABC transporter C fam 99.9 9.1E-24 2E-28 219.4 -0.3 178 65-262 1235-1451(1622)
42 COG4555 NatA ABC-type Na+ tran 99.9 7.5E-23 1.6E-27 163.5 4.5 174 68-261 2-211 (245)
43 COG4618 ArpD ABC-type protease 99.9 1.4E-22 3E-27 181.6 6.5 204 29-263 304-551 (580)
44 PRK10078 ribose 1,5-bisphospho 99.9 2.5E-20 5.4E-25 153.0 19.3 179 92-279 2-181 (186)
45 TIGR00957 MRP_assoc_pro multi 99.9 1.8E-23 3.9E-28 217.2 0.3 178 65-262 1282-1498(1522)
46 PRK13657 cyclic beta-1,2-gluca 99.9 3.9E-23 8.5E-28 197.9 1.0 177 66-262 333-548 (588)
47 PTZ00243 ABC transporter; Prov 99.9 3E-23 6.6E-28 215.2 -0.1 178 66-263 1307-1524(1560)
48 TIGR02203 MsbA_lipidA lipid A 99.9 1E-22 2.2E-27 194.6 2.6 177 66-262 329-546 (571)
49 COG1124 DppF ABC-type dipeptid 99.9 6.5E-23 1.4E-27 168.9 1.1 178 68-264 4-223 (252)
50 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 5.5E-23 1.2E-27 172.7 -0.2 179 67-266 4-227 (254)
51 TIGR01194 cyc_pep_trnsptr cycl 99.9 7.1E-23 1.5E-27 194.6 0.3 177 66-262 336-549 (555)
52 TIGR02857 CydD thiol reductant 99.9 1.9E-22 4E-27 191.1 2.9 170 67-256 320-529 (529)
53 TIGR01846 type_I_sec_HlyB type 99.9 1.2E-22 2.6E-27 197.9 1.6 178 65-262 453-670 (694)
54 COG3840 ThiQ ABC-type thiamine 99.8 1.6E-22 3.5E-27 159.1 1.8 176 68-262 2-209 (231)
55 COG1117 PstB ABC-type phosphat 99.8 9.6E-23 2.1E-27 164.4 0.4 182 66-261 6-226 (253)
56 PRK10522 multidrug transporter 99.8 7.2E-23 1.6E-27 194.4 -0.6 178 67-264 322-530 (547)
57 COG1118 CysA ABC-type sulfate/ 99.8 2.3E-22 4.9E-27 170.4 2.3 178 68-264 3-219 (345)
58 KOG0707 Guanylate kinase [Nucl 99.8 3.7E-20 8E-25 151.6 15.0 187 92-280 37-227 (231)
59 TIGR02868 CydC thiol reductant 99.8 1.2E-22 2.7E-27 192.3 0.2 158 66-237 333-529 (529)
60 TIGR01842 type_I_sec_PrtD type 99.8 2.4E-22 5.2E-27 190.8 0.6 177 66-262 315-532 (544)
61 TIGR02204 MsbA_rel ABC transpo 99.8 3.9E-22 8.5E-27 190.7 1.5 177 66-262 336-553 (576)
62 PRK10789 putative multidrug tr 99.8 4.4E-22 9.6E-27 189.8 1.5 176 66-261 312-527 (569)
63 TIGR02314 ABC_MetN D-methionin 99.8 3.7E-22 8E-27 177.8 0.1 175 68-261 2-219 (343)
64 TIGR01192 chvA glucan exporter 99.8 6.4E-22 1.4E-26 189.2 0.8 176 66-261 333-547 (585)
65 PRK13536 nodulation factor exp 99.8 5.1E-22 1.1E-26 177.1 -0.3 175 67-261 41-250 (340)
66 TIGR02322 phosphon_PhnN phosph 99.8 1.9E-18 4.1E-23 141.0 20.3 175 92-274 1-178 (179)
67 PRK13537 nodulation ABC transp 99.8 6.9E-22 1.5E-26 174.3 -0.3 175 67-261 7-216 (306)
68 TIGR01271 CFTR_protein cystic 99.8 6.8E-22 1.5E-26 204.9 -0.6 176 66-262 1216-1430(1490)
69 COG4152 ABC-type uncharacteriz 99.8 2.3E-21 5E-26 159.3 2.2 174 68-260 3-207 (300)
70 COG1131 CcmA ABC-type multidru 99.8 1.7E-21 3.7E-26 170.4 1.5 174 68-261 5-215 (293)
71 KOG0609 Calcium/calmodulin-dep 99.8 1E-18 2.2E-23 157.2 18.6 195 81-278 329-532 (542)
72 cd03261 ABC_Org_Solvent_Resist 99.8 1.4E-21 3E-26 166.4 -0.1 174 69-261 2-215 (235)
73 COG0411 LivG ABC-type branched 99.8 8.4E-22 1.8E-26 162.5 -1.4 174 68-261 5-228 (250)
74 COG0410 LivF ABC-type branched 99.8 5.8E-21 1.2E-25 156.3 3.3 175 67-261 3-215 (237)
75 COG1122 CbiO ABC-type cobalt t 99.8 2.4E-21 5.1E-26 163.2 0.9 175 68-261 4-217 (235)
76 COG3709 Uncharacterized compon 99.8 5.1E-18 1.1E-22 130.9 18.9 177 92-276 5-184 (192)
77 PRK11650 ugpC glycerol-3-phosp 99.8 1.1E-21 2.3E-26 176.1 -2.3 175 68-261 4-213 (356)
78 cd00071 GMPK Guanosine monopho 99.8 1.1E-18 2.4E-23 136.0 14.9 119 94-213 1-120 (137)
79 TIGR03265 PhnT2 putative 2-ami 99.8 1.1E-21 2.4E-26 175.8 -2.3 174 68-261 5-213 (353)
80 TIGR00960 3a0501s02 Type II (G 99.8 4.2E-21 9E-26 161.4 0.9 175 68-261 2-216 (216)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 6.4E-21 1.4E-25 160.4 2.0 172 69-260 2-217 (218)
82 COG4604 CeuD ABC-type enteroch 99.8 1.4E-20 2.9E-25 150.1 3.7 174 68-261 2-214 (252)
83 cd03246 ABCC_Protease_Secretio 99.8 3.8E-21 8.2E-26 156.1 0.4 158 69-261 2-173 (173)
84 PRK11432 fbpC ferric transport 99.8 1.7E-21 3.7E-26 174.3 -1.8 176 67-261 6-215 (351)
85 cd03256 ABC_PhnC_transporter A 99.8 4.3E-21 9.3E-26 163.9 0.6 174 69-261 2-223 (241)
86 PRK09536 btuD corrinoid ABC tr 99.8 2.1E-21 4.5E-26 176.1 -1.7 175 68-261 4-217 (402)
87 PRK11153 metN DL-methionine tr 99.8 4.2E-21 9.2E-26 171.8 0.0 175 68-261 2-219 (343)
88 cd03225 ABC_cobalt_CbiO_domain 99.8 1.6E-20 3.5E-25 157.2 3.4 172 70-260 2-211 (211)
89 TIGR02673 FtsE cell division A 99.8 1.6E-20 3.5E-25 157.5 3.3 174 68-260 2-214 (214)
90 TIGR03522 GldA_ABC_ATP gliding 99.8 5.1E-21 1.1E-25 168.5 0.2 174 68-261 3-210 (301)
91 PRK09452 potA putrescine/sperm 99.8 2.3E-21 5E-26 174.7 -2.2 177 67-262 14-224 (375)
92 cd03259 ABC_Carb_Solutes_like 99.8 8.6E-21 1.9E-25 159.1 1.3 172 69-261 2-209 (213)
93 PTZ00265 multidrug resistance 99.8 1.2E-20 2.7E-25 194.6 2.8 173 67-260 382-656 (1466)
94 TIGR01288 nodI ATP-binding ABC 99.8 4.5E-21 9.7E-26 169.1 -0.5 174 68-261 5-213 (303)
95 TIGR02315 ABC_phnC phosphonate 99.8 1.2E-20 2.6E-25 161.4 2.1 176 68-262 2-225 (243)
96 PRK14250 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 161.2 2.0 175 68-261 4-210 (241)
97 cd03226 ABC_cobalt_CbiO_domain 99.8 8.8E-21 1.9E-25 158.1 1.0 170 70-261 2-204 (205)
98 PRK13650 cbiO cobalt transport 99.8 8.6E-21 1.9E-25 165.4 0.9 174 68-261 5-218 (279)
99 cd03265 ABC_DrrA DrrA is the A 99.8 1E-20 2.3E-25 159.4 1.2 173 69-261 2-210 (220)
100 cd03268 ABC_BcrA_bacitracin_re 99.8 6.9E-21 1.5E-25 159.1 -0.0 172 69-261 2-204 (208)
101 TIGR03258 PhnT 2-aminoethylpho 99.8 3E-21 6.4E-26 173.3 -2.4 175 68-261 6-217 (362)
102 cd03218 ABC_YhbG The ABC trans 99.8 1.8E-20 3.8E-25 159.2 2.3 174 69-261 2-211 (232)
103 cd03264 ABC_drug_resistance_li 99.8 1E-20 2.2E-25 158.4 0.8 172 69-261 2-207 (211)
104 PRK13647 cbiO cobalt transport 99.8 7.8E-21 1.7E-25 165.2 0.1 175 68-261 5-216 (274)
105 cd03229 ABC_Class3 This class 99.8 6.3E-21 1.4E-25 155.5 -0.6 162 69-260 2-178 (178)
106 PRK10908 cell division protein 99.8 9.9E-21 2.1E-25 159.7 0.4 177 68-263 2-217 (222)
107 cd03262 ABC_HisP_GlnQ_permease 99.8 1.5E-20 3.3E-25 157.6 1.6 174 69-261 2-213 (213)
108 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 9.5E-21 2.1E-25 161.3 0.3 174 68-261 2-210 (236)
109 TIGR01186 proV glycine betaine 99.8 1.7E-20 3.7E-25 168.1 1.6 163 80-261 8-208 (363)
110 cd03260 ABC_PstB_phosphate_tra 99.8 9.5E-21 2.1E-25 160.4 -0.0 174 69-261 2-218 (227)
111 PRK10851 sulfate/thiosulfate t 99.8 3.4E-21 7.3E-26 172.7 -3.1 175 68-261 3-215 (353)
112 cd03266 ABC_NatA_sodium_export 99.8 1.2E-20 2.7E-25 158.7 0.5 173 69-261 3-214 (218)
113 PRK13631 cbiO cobalt transport 99.8 1.5E-20 3.2E-25 166.6 1.0 176 66-261 20-254 (320)
114 TIGR02211 LolD_lipo_ex lipopro 99.8 2.4E-20 5.3E-25 157.2 2.2 174 68-261 2-219 (221)
115 KOG0054 Multidrug resistance-a 99.8 2.6E-20 5.7E-25 186.4 2.7 181 63-263 1134-1353(1381)
116 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.5E-20 3.2E-25 163.1 0.6 173 68-261 3-214 (275)
117 cd03258 ABC_MetN_methionine_tr 99.8 2.6E-20 5.6E-25 158.3 2.1 176 68-262 2-220 (233)
118 cd03224 ABC_TM1139_LivF_branch 99.8 2.4E-20 5.1E-25 157.4 1.8 175 69-262 2-211 (222)
119 cd03292 ABC_FtsE_transporter F 99.8 2.5E-20 5.3E-25 156.4 1.8 173 69-260 2-213 (214)
120 cd03263 ABC_subfamily_A The AB 99.8 1.6E-20 3.5E-25 158.2 0.6 174 69-262 2-211 (220)
121 cd03219 ABC_Mj1267_LivG_branch 99.8 2.7E-20 5.8E-25 158.5 1.7 175 69-262 2-222 (236)
122 COG4181 Predicted ABC-type tra 99.8 1E-19 2.2E-24 142.1 4.7 177 67-263 6-226 (228)
123 cd03301 ABC_MalK_N The N-termi 99.8 2.2E-20 4.7E-25 156.6 1.1 174 69-261 2-209 (213)
124 cd03230 ABC_DR_subfamily_A Thi 99.8 9.5E-21 2E-25 153.7 -1.3 157 70-260 3-172 (173)
125 PRK13635 cbiO cobalt transport 99.8 2.5E-20 5.4E-25 162.4 1.1 174 68-261 6-218 (279)
126 TIGR01188 drrA daunorubicin re 99.8 5E-20 1.1E-24 162.4 3.0 162 80-261 8-202 (302)
127 PRK10575 iron-hydroxamate tran 99.8 1.5E-20 3.2E-25 162.8 -0.3 176 67-261 11-226 (265)
128 COG4559 ABC-type hemin transpo 99.8 1.4E-19 3E-24 146.0 5.2 175 68-261 2-219 (259)
129 cd03215 ABC_Carb_Monos_II This 99.8 1.4E-20 3.1E-25 153.9 -0.5 163 68-261 5-182 (182)
130 PRK11000 maltose/maltodextrin 99.8 9.1E-21 2E-25 171.1 -1.9 174 68-261 4-212 (369)
131 cd03294 ABC_Pro_Gly_Bertaine T 99.8 6.9E-20 1.5E-24 158.9 3.6 174 69-261 26-239 (269)
132 cd03214 ABC_Iron-Siderophores_ 99.8 1.4E-20 3E-25 153.7 -0.7 162 70-261 2-176 (180)
133 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.6E-20 5.7E-25 159.2 0.9 174 69-261 2-214 (242)
134 PRK13643 cbiO cobalt transport 99.8 2.5E-20 5.3E-25 163.2 0.7 175 68-261 2-222 (288)
135 PRK10247 putative ABC transpor 99.8 4.5E-20 9.7E-25 156.0 2.2 181 67-267 7-223 (225)
136 PRK13637 cbiO cobalt transport 99.8 2.1E-20 4.6E-25 163.5 -0.1 175 68-261 3-223 (287)
137 PRK10584 putative ABC transpor 99.8 3.9E-20 8.4E-25 156.7 1.4 175 67-261 6-224 (228)
138 cd03216 ABC_Carb_Monos_I This 99.8 9.4E-21 2E-25 152.2 -2.3 147 69-262 2-161 (163)
139 PRK11607 potG putrescine trans 99.8 9.3E-21 2E-25 171.0 -2.8 176 67-261 19-228 (377)
140 COG1123 ATPase components of v 99.8 6.6E-20 1.4E-24 168.3 2.6 179 66-264 279-511 (539)
141 PRK13634 cbiO cobalt transport 99.8 2.4E-20 5.3E-25 163.4 -0.3 175 68-261 3-224 (290)
142 cd03293 ABC_NrtD_SsuB_transpor 99.8 3.6E-20 7.7E-25 156.1 0.7 174 69-261 2-212 (220)
143 COG1129 MglA ABC-type sugar tr 99.8 1.2E-19 2.6E-24 165.5 4.1 174 67-261 8-223 (500)
144 PRK13652 cbiO cobalt transport 99.8 4.3E-20 9.3E-25 160.9 1.2 175 68-261 4-216 (277)
145 TIGR03005 ectoine_ehuA ectoine 99.8 1.3E-20 2.9E-25 162.0 -2.1 175 69-262 2-226 (252)
146 cd03252 ABCC_Hemolysin The ABC 99.8 4.2E-20 9.1E-25 157.4 1.0 171 69-261 2-214 (237)
147 cd03235 ABC_Metallic_Cations A 99.8 6.9E-20 1.5E-24 153.6 2.2 172 70-260 2-209 (213)
148 cd03269 ABC_putative_ATPase Th 99.8 1.8E-20 3.8E-25 156.9 -1.4 170 69-261 2-206 (210)
149 cd03228 ABCC_MRP_Like The MRP 99.8 3.9E-20 8.5E-25 149.8 0.7 156 70-260 3-171 (171)
150 cd03247 ABCC_cytochrome_bd The 99.8 1.6E-20 3.4E-25 153.2 -1.7 159 70-261 3-174 (178)
151 PRK13638 cbiO cobalt transport 99.8 5.5E-20 1.2E-24 159.8 1.5 175 68-261 2-214 (271)
152 TIGR03410 urea_trans_UrtE urea 99.8 4.7E-20 1E-24 156.4 1.0 174 69-261 2-210 (230)
153 PRK13646 cbiO cobalt transport 99.8 3E-20 6.6E-25 162.5 -0.2 175 68-261 3-224 (286)
154 PRK11831 putative ABC transpor 99.8 3E-20 6.4E-25 161.3 -0.3 176 67-261 7-222 (269)
155 PRK10070 glycine betaine trans 99.8 1.4E-19 3E-24 164.1 4.0 177 66-261 27-243 (400)
156 COG4175 ProV ABC-type proline/ 99.8 1E-18 2.2E-23 148.8 8.8 163 80-261 43-243 (386)
157 cd03296 ABC_CysA_sulfate_impor 99.8 3.8E-20 8.2E-25 157.9 0.1 177 68-261 3-215 (239)
158 PRK10253 iron-enterobactin tra 99.8 4.5E-20 9.7E-25 159.8 0.5 177 66-261 6-222 (265)
159 cd03257 ABC_NikE_OppD_transpor 99.8 5E-20 1.1E-24 156.0 0.7 175 68-261 2-224 (228)
160 COG4619 ABC-type uncharacteriz 99.8 2.2E-18 4.8E-23 134.2 9.7 175 69-262 5-213 (223)
161 PRK11264 putative amino-acid A 99.8 7.5E-20 1.6E-24 157.1 1.7 175 68-261 4-222 (250)
162 PRK11629 lolD lipoprotein tran 99.8 4.8E-20 1E-24 156.7 0.5 174 68-261 6-223 (233)
163 COG3845 ABC-type uncharacteriz 99.8 1.1E-19 2.4E-24 163.0 2.7 181 67-266 4-223 (501)
164 PRK13548 hmuV hemin importer A 99.8 6.1E-20 1.3E-24 158.3 1.0 175 68-261 3-219 (258)
165 PRK13644 cbiO cobalt transport 99.8 6E-20 1.3E-24 159.7 1.0 174 68-261 2-213 (274)
166 TIGR03873 F420-0_ABC_ATP propo 99.8 6.4E-20 1.4E-24 158.1 0.9 175 68-261 2-215 (256)
167 PRK13640 cbiO cobalt transport 99.8 7E-20 1.5E-24 159.9 1.1 175 67-261 5-221 (282)
168 PRK11231 fecE iron-dicitrate t 99.8 4.6E-20 1E-24 158.9 -0.1 175 68-261 3-216 (255)
169 PRK15079 oligopeptide ABC tran 99.8 5.6E-20 1.2E-24 163.5 0.4 176 67-261 8-240 (331)
170 PRK13648 cbiO cobalt transport 99.8 8.4E-20 1.8E-24 158.4 1.4 175 67-261 7-220 (269)
171 PRK13651 cobalt transporter AT 99.8 5.5E-20 1.2E-24 161.9 0.2 177 68-261 3-243 (305)
172 PRK13636 cbiO cobalt transport 99.8 7.8E-20 1.7E-24 159.7 0.7 176 67-261 5-220 (283)
173 PRK11022 dppD dipeptide transp 99.8 5.1E-20 1.1E-24 163.6 -0.4 179 68-261 4-232 (326)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.2E-19 2.5E-24 153.4 1.8 173 68-261 23-220 (224)
175 PRK13632 cbiO cobalt transport 99.8 7.1E-20 1.5E-24 159.0 0.5 175 67-261 7-220 (271)
176 TIGR03411 urea_trans_UrtD urea 99.8 6.3E-20 1.4E-24 156.8 0.1 175 68-261 3-220 (242)
177 PRK11300 livG leucine/isoleuci 99.8 6.2E-20 1.4E-24 158.1 0.0 176 67-261 5-232 (255)
178 PRK11247 ssuB aliphatic sulfon 99.8 1.3E-20 2.9E-25 162.1 -4.2 172 67-261 12-212 (257)
179 cd03369 ABCC_NFT1 Domain 2 of 99.8 6.6E-20 1.4E-24 153.0 0.1 175 67-261 6-201 (207)
180 PRK10895 lipopolysaccharide AB 99.8 1.8E-19 3.8E-24 154.0 2.6 175 68-261 4-215 (241)
181 PRK11308 dppF dipeptide transp 99.8 7.2E-20 1.6E-24 162.7 0.0 176 68-262 6-234 (327)
182 PRK11248 tauB taurine transpor 99.8 6E-20 1.3E-24 158.0 -0.6 169 68-257 2-203 (255)
183 PRK09493 glnQ glutamine ABC tr 99.8 1E-19 2.3E-24 155.3 0.8 176 68-262 2-215 (240)
184 cd03244 ABCC_MRP_domain2 Domai 99.8 1.6E-19 3.4E-24 152.3 1.6 172 68-262 3-216 (221)
185 PRK14269 phosphate ABC transpo 99.8 1.4E-19 3E-24 155.1 1.3 178 68-261 3-219 (246)
186 PRK10619 histidine/lysine/argi 99.8 9.3E-20 2E-24 157.2 0.2 177 66-261 4-230 (257)
187 PRK13633 cobalt transporter AT 99.8 1.6E-19 3.5E-24 157.5 1.7 174 68-261 5-222 (280)
188 PRK13642 cbiO cobalt transport 99.8 1.1E-19 2.5E-24 158.2 0.6 174 68-261 5-218 (277)
189 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 8.4E-20 1.8E-24 143.6 -0.2 132 70-260 3-144 (144)
190 PRK13641 cbiO cobalt transport 99.8 8.6E-20 1.9E-24 159.7 -0.2 175 68-261 3-223 (287)
191 cd03245 ABCC_bacteriocin_expor 99.8 1.5E-19 3.2E-24 152.4 1.2 172 68-261 3-216 (220)
192 TIGR03740 galliderm_ABC gallid 99.8 3.3E-20 7.2E-25 156.6 -2.8 174 69-261 2-202 (223)
193 TIGR00972 3a0107s01c2 phosphat 99.8 1.4E-19 3.1E-24 155.1 1.1 175 68-261 2-221 (247)
194 cd03254 ABCC_Glucan_exporter_l 99.8 1.5E-19 3.3E-24 153.2 1.1 173 68-262 3-216 (229)
195 COG4608 AppF ABC-type oligopep 99.8 7E-19 1.5E-23 148.1 5.1 153 80-264 28-191 (268)
196 PRK13649 cbiO cobalt transport 99.8 1.4E-19 3E-24 158.0 0.9 175 68-261 3-223 (280)
197 PRK11124 artP arginine transpo 99.8 1.2E-19 2.6E-24 155.1 0.4 175 68-261 3-219 (242)
198 PRK11614 livF leucine/isoleuci 99.8 9.5E-20 2.1E-24 155.3 -0.4 175 68-261 6-215 (237)
199 cd03251 ABCC_MsbA MsbA is an e 99.8 3E-19 6.5E-24 151.9 2.7 172 69-262 2-215 (234)
200 PRK14247 phosphate ABC transpo 99.8 2.3E-19 5E-24 154.1 1.9 180 68-261 4-223 (250)
201 PRK14267 phosphate ABC transpo 99.8 8.8E-20 1.9E-24 157.0 -0.7 180 68-261 5-226 (253)
202 cd03223 ABCD_peroxisomal_ALDP 99.7 1.9E-19 4.1E-24 145.1 1.1 150 69-259 2-163 (166)
203 TIGR03415 ABC_choXWV_ATP choli 99.7 5.1E-19 1.1E-23 159.3 4.0 172 71-261 28-243 (382)
204 cd03298 ABC_ThiQ_thiamine_tran 99.7 7.7E-20 1.7E-24 153.1 -1.5 174 69-261 2-207 (211)
205 TIGR01978 sufC FeS assembly AT 99.7 1.7E-19 3.6E-24 154.3 0.5 174 69-261 2-223 (243)
206 PRK13645 cbiO cobalt transport 99.7 9.5E-20 2E-24 159.7 -1.3 176 67-261 6-229 (289)
207 cd03248 ABCC_TAP TAP, the Tran 99.7 1.1E-19 2.5E-24 153.7 -1.0 176 66-261 10-226 (226)
208 PRK14257 phosphate ABC transpo 99.7 1.6E-19 3.4E-24 160.5 -0.3 182 66-261 79-302 (329)
209 PRK15112 antimicrobial peptide 99.7 1.8E-19 3.9E-24 156.2 0.1 176 67-261 4-228 (267)
210 PRK14273 phosphate ABC transpo 99.7 3.4E-19 7.4E-24 153.4 1.7 181 67-261 7-227 (254)
211 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 2.7E-19 5.8E-24 152.6 1.0 171 69-261 2-215 (238)
212 COG4161 ArtP ABC-type arginine 99.7 1.6E-18 3.4E-23 134.3 5.0 177 68-263 3-221 (242)
213 PRK13547 hmuV hemin importer A 99.7 2.8E-19 6.1E-24 155.1 0.8 175 68-261 2-233 (272)
214 COG4525 TauB ABC-type taurine 99.7 6.9E-19 1.5E-23 140.2 2.9 174 68-259 4-209 (259)
215 TIGR01277 thiQ thiamine ABC tr 99.7 9.1E-20 2E-24 152.9 -2.4 172 69-261 2-207 (213)
216 TIGR02769 nickel_nikE nickel i 99.7 3E-19 6.5E-24 154.7 0.7 175 68-261 3-229 (265)
217 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.6E-19 5.6E-24 148.7 0.3 166 69-261 2-183 (200)
218 TIGR03608 L_ocin_972_ABC putat 99.7 8.6E-19 1.9E-23 146.2 2.9 166 71-256 2-206 (206)
219 cd03253 ABCC_ATM1_transporter 99.7 4.7E-19 1E-23 150.9 1.3 172 69-262 2-214 (236)
220 PRK09984 phosphonate/organopho 99.7 1.7E-19 3.7E-24 156.0 -1.6 178 68-261 5-231 (262)
221 PRK14268 phosphate ABC transpo 99.7 3.7E-19 8E-24 153.5 0.5 181 67-261 12-231 (258)
222 PRK13639 cbiO cobalt transport 99.7 2.1E-19 4.6E-24 156.3 -1.0 174 68-261 2-215 (275)
223 TIGR02982 heterocyst_DevA ABC 99.7 3.4E-19 7.4E-24 150.2 0.1 172 69-260 3-218 (220)
224 cd03288 ABCC_SUR2 The SUR doma 99.7 5.4E-19 1.2E-23 152.4 1.3 176 65-261 17-232 (257)
225 PRK10771 thiQ thiamine transpo 99.7 1.3E-19 2.8E-24 154.0 -2.6 175 68-261 2-208 (232)
226 PRK14235 phosphate transporter 99.7 4.6E-19 1E-23 153.6 0.5 182 66-261 18-240 (267)
227 PRK09473 oppD oligopeptide tra 99.7 3E-19 6.5E-24 158.9 -0.7 180 67-262 12-241 (330)
228 PRK10938 putative molybdenum t 99.7 8.9E-19 1.9E-23 164.4 2.3 175 68-261 4-213 (490)
229 cd03300 ABC_PotA_N PotA is an 99.7 4E-19 8.6E-24 150.9 -0.1 176 69-261 2-209 (232)
230 PRK15439 autoinducer 2 ABC tra 99.7 3.6E-19 7.8E-24 167.7 -0.5 176 67-261 11-218 (510)
231 PRK11701 phnK phosphonate C-P 99.7 4.1E-19 8.8E-24 153.3 -0.1 176 67-261 6-230 (258)
232 PRK11144 modC molybdate transp 99.7 1.9E-19 4E-24 161.7 -2.4 171 72-261 5-207 (352)
233 PRK14274 phosphate ABC transpo 99.7 7.9E-19 1.7E-23 151.6 1.5 180 67-261 12-232 (259)
234 PRK10744 pstB phosphate transp 99.7 5.8E-19 1.3E-23 152.5 0.4 182 66-261 12-233 (260)
235 PRK15177 Vi polysaccharide exp 99.7 1.7E-18 3.8E-23 145.0 3.2 160 80-261 2-181 (213)
236 PRK14256 phosphate ABC transpo 99.7 5.2E-19 1.1E-23 152.1 -0.2 181 67-261 4-225 (252)
237 cd03267 ABC_NatA_like Similar 99.7 9.6E-19 2.1E-23 149.0 1.0 167 75-261 29-232 (236)
238 cd03299 ABC_ModC_like Archeal 99.7 7.9E-19 1.7E-23 149.4 0.3 172 69-261 2-208 (235)
239 PRK14242 phosphate transporter 99.7 1.1E-18 2.4E-23 150.2 1.1 181 67-261 6-226 (253)
240 cd03213 ABCG_EPDR ABCG transpo 99.7 9.4E-20 2E-24 150.6 -5.4 164 68-261 4-190 (194)
241 PRK15093 antimicrobial peptide 99.7 4.6E-19 1E-23 157.9 -1.3 179 68-261 4-237 (330)
242 PRK10419 nikE nickel transport 99.7 1.5E-18 3.2E-23 150.5 1.8 176 68-262 4-231 (268)
243 TIGR02323 CP_lyasePhnK phospho 99.7 6.6E-19 1.4E-23 151.5 -0.5 175 68-261 4-227 (253)
244 cd03232 ABC_PDR_domain2 The pl 99.7 1.1E-19 2.4E-24 149.9 -5.0 166 68-262 4-189 (192)
245 COG1119 ModF ABC-type molybden 99.7 5E-18 1.1E-22 140.2 4.7 178 66-262 30-252 (257)
246 PRK10762 D-ribose transporter 99.7 8.2E-19 1.8E-23 165.0 0.0 176 67-261 4-219 (501)
247 PRK14259 phosphate ABC transpo 99.7 1.7E-18 3.7E-23 150.2 2.0 178 67-258 13-228 (269)
248 PRK14246 phosphate ABC transpo 99.7 1.4E-18 3E-23 149.7 1.4 178 65-261 8-230 (257)
249 PRK14253 phosphate ABC transpo 99.7 1.5E-18 3.3E-23 148.9 1.6 181 68-262 4-223 (249)
250 TIGR02142 modC_ABC molybdenum 99.7 2.8E-19 6.1E-24 160.8 -3.1 170 72-261 4-210 (354)
251 PLN03232 ABC transporter C fam 99.7 1.1E-18 2.4E-23 181.4 0.8 169 67-261 614-817 (1495)
252 COG1137 YhbG ABC-type (unclass 99.7 1.4E-18 3.1E-23 138.9 1.2 174 68-261 5-217 (243)
253 PRK14241 phosphate transporter 99.7 1.2E-18 2.5E-23 150.4 0.8 181 67-261 4-231 (258)
254 PRK09700 D-allose transporter 99.7 8.8E-19 1.9E-23 165.2 -0.1 175 67-261 5-223 (510)
255 TIGR00968 3a0106s01 sulfate AB 99.7 8.4E-19 1.8E-23 149.4 -0.3 176 69-261 2-209 (237)
256 PRK14272 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 150.0 0.4 180 68-261 5-225 (252)
257 cd03250 ABCC_MRP_domain1 Domai 99.7 2.1E-18 4.6E-23 143.6 2.1 168 69-260 2-204 (204)
258 TIGR01184 ntrCD nitrate transp 99.7 2.2E-18 4.7E-23 146.2 2.2 162 81-263 1-195 (230)
259 PRK10418 nikD nickel transport 99.7 1.1E-18 2.4E-23 150.2 0.3 177 68-261 5-219 (254)
260 PRK13538 cytochrome c biogenes 99.7 1.8E-18 3.9E-23 144.1 1.5 169 68-256 2-202 (204)
261 cd03233 ABC_PDR_domain1 The pl 99.7 5.5E-19 1.2E-23 146.9 -1.6 173 68-261 4-198 (202)
262 PRK14240 phosphate transporter 99.7 1.4E-18 3E-23 149.3 0.8 180 68-261 4-223 (250)
263 COG4148 ModC ABC-type molybdat 99.7 8.7E-18 1.9E-22 140.8 5.5 169 74-261 7-207 (352)
264 COG4598 HisP ABC-type histidin 99.7 2E-17 4.2E-22 130.4 7.1 179 66-263 5-232 (256)
265 COG0444 DppD ABC-type dipeptid 99.7 2.2E-18 4.9E-23 148.0 1.9 180 68-263 2-234 (316)
266 PRK14270 phosphate ABC transpo 99.7 1.7E-18 3.8E-23 148.7 1.3 181 67-261 4-224 (251)
267 cd03222 ABC_RNaseL_inhibitor T 99.7 1.4E-18 3.1E-23 140.7 0.7 133 71-260 4-149 (177)
268 PRK13549 xylose transporter AT 99.7 1.1E-18 2.4E-23 164.3 -0.0 178 67-261 5-221 (506)
269 PRK14249 phosphate ABC transpo 99.7 1.5E-18 3.2E-23 149.2 0.7 181 67-261 4-224 (251)
270 PRK14248 phosphate ABC transpo 99.7 1.3E-18 2.9E-23 150.8 0.1 181 67-261 21-241 (268)
271 PRK14262 phosphate ABC transpo 99.7 1.7E-18 3.7E-23 148.7 0.7 180 68-261 4-223 (250)
272 PRK14271 phosphate ABC transpo 99.7 1.3E-18 2.8E-23 151.4 -0.1 181 67-261 21-240 (276)
273 COG4586 ABC-type uncharacteriz 99.7 7.4E-18 1.6E-22 140.9 4.3 174 80-274 39-250 (325)
274 PRK14237 phosphate transporter 99.7 1.8E-18 3.8E-23 150.0 0.4 181 67-261 20-240 (267)
275 PRK14251 phosphate ABC transpo 99.7 1.6E-18 3.4E-23 149.0 -0.0 180 68-261 5-224 (251)
276 PRK14258 phosphate ABC transpo 99.7 1.5E-18 3.3E-23 149.9 -0.1 178 67-258 7-226 (261)
277 PLN03130 ABC transporter C fam 99.7 2E-18 4.3E-23 179.9 0.6 168 67-261 614-817 (1622)
278 COG1123 ATPase components of v 99.7 4.2E-18 9.2E-23 156.4 2.6 183 67-264 5-236 (539)
279 PRK14239 phosphate transporter 99.7 2E-18 4.3E-23 148.5 0.2 177 68-261 6-225 (252)
280 PRK14261 phosphate ABC transpo 99.7 2.4E-18 5.2E-23 148.1 0.7 181 67-261 6-226 (253)
281 PRK03695 vitamin B12-transport 99.7 7.4E-18 1.6E-22 144.5 3.7 170 69-261 2-211 (248)
282 PRK10982 galactose/methyl gala 99.7 2.6E-18 5.6E-23 161.3 0.7 171 71-261 2-212 (491)
283 PRK10261 glutathione transport 99.7 2.4E-18 5.3E-23 165.5 0.5 179 67-262 12-248 (623)
284 PRK13545 tagH teichoic acids e 99.7 2E-18 4.3E-23 159.2 -0.2 173 66-261 20-221 (549)
285 PRK15134 microcin C ABC transp 99.7 2.8E-18 6E-23 162.5 0.7 181 67-261 5-235 (529)
286 PRK14236 phosphate transporter 99.7 2.4E-18 5.1E-23 149.6 0.2 182 67-262 25-246 (272)
287 CHL00131 ycf16 sulfate ABC tra 99.7 1.8E-18 4E-23 148.7 -0.5 176 67-261 7-230 (252)
288 PRK14238 phosphate transporter 99.7 3E-18 6.6E-23 148.8 0.8 181 67-261 24-244 (271)
289 PRK14243 phosphate transporter 99.7 4.9E-18 1.1E-22 146.9 2.0 177 67-257 10-224 (264)
290 PRK11288 araG L-arabinose tran 99.7 1.7E-18 3.8E-23 162.8 -0.9 176 68-262 5-219 (501)
291 cd03290 ABCC_SUR1_N The SUR do 99.7 4.8E-18 1E-22 142.9 1.8 168 70-260 3-218 (218)
292 PRK13543 cytochrome c biogenes 99.7 2.5E-18 5.3E-23 144.3 -0.1 172 67-257 11-211 (214)
293 PRK08356 hypothetical protein; 99.7 2.6E-15 5.6E-20 124.1 18.0 178 92-275 5-193 (195)
294 PRK15056 manganese/iron transp 99.7 8E-19 1.7E-23 152.5 -3.2 173 68-261 7-219 (272)
295 PRK14245 phosphate ABC transpo 99.7 2.4E-18 5.2E-23 147.8 -0.2 178 68-261 4-223 (250)
296 COG4172 ABC-type uncharacteriz 99.7 2.9E-17 6.3E-22 144.0 6.4 173 68-263 277-507 (534)
297 PRK13540 cytochrome c biogenes 99.7 3.3E-18 7.1E-23 142.0 0.5 165 68-254 2-197 (200)
298 PRK14275 phosphate ABC transpo 99.7 2.8E-18 6.1E-23 150.1 0.0 179 67-261 39-259 (286)
299 PRK09580 sufC cysteine desulfu 99.7 6.4E-18 1.4E-22 144.9 2.2 175 68-261 2-224 (248)
300 cd03231 ABC_CcmA_heme_exporter 99.7 4.5E-18 9.8E-23 141.3 0.8 166 69-256 2-198 (201)
301 PRK09544 znuC high-affinity zi 99.7 3.3E-18 7.2E-23 146.8 -0.1 168 68-258 5-196 (251)
302 PRK14265 phosphate ABC transpo 99.7 3.6E-18 7.9E-23 148.5 0.1 177 67-257 20-234 (274)
303 PRK13539 cytochrome c biogenes 99.7 4.9E-18 1.1E-22 141.7 0.7 166 68-257 3-199 (207)
304 cd03297 ABC_ModC_molybdenum_tr 99.7 6.2E-18 1.3E-22 141.9 1.1 169 72-261 5-210 (214)
305 TIGR01189 ccmA heme ABC export 99.7 5.2E-18 1.1E-22 140.6 0.6 156 69-238 2-188 (198)
306 TIGR02770 nickel_nikD nickel i 99.7 1.8E-17 3.9E-22 140.6 3.8 164 81-261 2-204 (230)
307 PRK09700 D-allose transporter 99.7 9.4E-18 2E-22 158.2 2.2 177 67-262 265-488 (510)
308 COG4167 SapF ABC-type antimicr 99.7 7.1E-17 1.5E-21 127.6 6.7 178 67-263 4-230 (267)
309 PRK10261 glutathione transport 99.7 7.2E-18 1.6E-22 162.2 1.4 176 67-261 313-542 (623)
310 TIGR03269 met_CoM_red_A2 methy 99.7 5.3E-18 1.1E-22 160.3 0.4 186 69-261 2-247 (520)
311 PRK15064 ABC transporter ATP-b 99.7 6.4E-18 1.4E-22 160.1 1.0 177 67-262 319-514 (530)
312 PRK14255 phosphate ABC transpo 99.7 4.1E-18 8.8E-23 146.5 -0.4 180 68-261 6-225 (252)
313 PRK14260 phosphate ABC transpo 99.7 4.4E-18 9.4E-23 146.9 -0.4 175 67-257 7-223 (259)
314 TIGR02633 xylG D-xylose ABC tr 99.7 4.7E-18 1E-22 159.9 -0.3 177 68-261 2-219 (500)
315 PRK14252 phosphate ABC transpo 99.7 6.9E-18 1.5E-22 146.2 0.6 181 67-261 16-238 (265)
316 cd03237 ABC_RNaseL_inhibitor_d 99.7 6.1E-17 1.3E-21 138.5 6.2 158 81-259 15-192 (246)
317 COG1101 PhnK ABC-type uncharac 99.7 7.9E-17 1.7E-21 130.4 6.3 163 80-261 21-227 (263)
318 PRK14244 phosphate ABC transpo 99.7 5.3E-18 1.2E-22 145.7 -0.9 180 69-262 7-227 (251)
319 TIGR00954 3a01203 Peroxysomal 99.7 1.6E-17 3.4E-22 160.7 2.2 170 66-257 450-652 (659)
320 PRK13541 cytochrome c biogenes 99.7 3.1E-18 6.7E-23 141.7 -2.8 165 68-253 2-192 (195)
321 PRK14254 phosphate ABC transpo 99.7 1.1E-17 2.5E-22 146.1 0.6 181 67-261 39-258 (285)
322 PRK10636 putative ABC transpor 99.7 1E-17 2.2E-22 161.4 0.3 173 67-261 312-505 (638)
323 TIGR01257 rim_protein retinal- 99.7 8.5E-18 1.8E-22 175.3 -0.5 176 66-261 1936-2148(2272)
324 PRK14266 phosphate ABC transpo 99.7 1.4E-17 2.9E-22 143.1 0.8 180 68-261 4-223 (250)
325 TIGR02324 CP_lyasePhnL phospho 99.7 2.5E-17 5.5E-22 139.1 2.4 170 68-256 2-222 (224)
326 PRK15134 microcin C ABC transp 99.7 1.9E-17 4.1E-22 156.8 1.6 175 67-261 275-504 (529)
327 PRK14263 phosphate ABC transpo 99.7 2E-17 4.2E-22 142.9 1.3 176 68-257 9-222 (261)
328 PRK15064 ABC transporter ATP-b 99.7 1.4E-17 3E-22 157.8 0.3 176 68-261 2-230 (530)
329 PRK13546 teichoic acids export 99.7 4.1E-17 8.9E-22 140.9 3.0 171 80-273 39-239 (264)
330 PRK11819 putative ABC transpor 99.7 3.4E-17 7.4E-22 155.8 2.6 171 67-258 324-517 (556)
331 PRK10982 galactose/methyl gala 99.6 2.8E-17 6.1E-22 154.3 1.8 176 67-262 250-470 (491)
332 PRK13549 xylose transporter AT 99.6 3.5E-17 7.6E-22 154.2 2.3 177 67-261 259-483 (506)
333 COG4107 PhnK ABC-type phosphon 99.6 2.4E-16 5.2E-21 123.6 6.4 184 67-263 6-232 (258)
334 cd00267 ABC_ATPase ABC (ATP-bi 99.6 2.1E-17 4.6E-22 131.9 0.5 143 71-260 3-157 (157)
335 PRK11819 putative ABC transpor 99.6 2.4E-17 5.2E-22 156.8 0.8 185 67-261 6-238 (556)
336 cd03234 ABCG_White The White s 99.6 1.9E-17 4E-22 140.2 -0.2 174 69-262 5-223 (226)
337 TIGR01257 rim_protein retinal- 99.6 1.7E-17 3.7E-22 173.1 -0.6 175 67-261 928-1138(2272)
338 PRK11147 ABC transporter ATPas 99.6 2.2E-17 4.8E-22 159.3 0.2 174 67-261 319-516 (635)
339 PRK14264 phosphate ABC transpo 99.6 1.8E-17 4E-22 146.2 -0.5 181 67-261 45-278 (305)
340 TIGR00957 MRP_assoc_pro multi 99.6 2.6E-17 5.6E-22 171.5 0.5 168 67-261 636-839 (1522)
341 cd03291 ABCC_CFTR1 The CFTR su 99.6 2.5E-17 5.4E-22 143.4 0.1 173 65-261 37-236 (282)
342 TIGR02633 xylG D-xylose ABC tr 99.6 8.2E-17 1.8E-21 151.6 3.6 178 67-262 257-482 (500)
343 PRK10636 putative ABC transpor 99.6 3.3E-17 7.1E-22 157.9 0.6 174 68-261 2-224 (638)
344 COG1134 TagH ABC-type polysacc 99.6 1.4E-16 3E-21 131.9 3.4 159 80-260 42-224 (249)
345 PRK10535 macrolide transporter 99.6 5.2E-17 1.1E-21 156.8 0.8 174 68-261 5-221 (648)
346 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 9.4E-17 2E-21 152.7 2.5 173 67-258 322-515 (552)
347 cd03236 ABC_RNaseL_inhibitor_d 99.6 1.5E-16 3.3E-21 136.6 3.4 180 71-258 4-214 (255)
348 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 5.4E-17 1.2E-21 154.4 0.1 185 68-261 5-236 (552)
349 TIGR03269 met_CoM_red_A2 methy 99.6 1.9E-17 4.2E-22 156.5 -2.9 176 67-261 279-506 (520)
350 PRK11288 araG L-arabinose tran 99.6 2.4E-16 5.2E-21 148.3 3.7 174 67-261 257-474 (501)
351 PRK13409 putative ATPase RIL; 99.6 1.2E-16 2.7E-21 152.1 1.5 172 67-258 340-529 (590)
352 PLN03073 ABC transporter F fam 99.6 6.5E-17 1.4E-21 156.8 -0.7 174 67-261 508-702 (718)
353 PLN03211 ABC transporter G-25; 99.6 5.8E-17 1.3E-21 156.2 -1.1 188 69-274 70-300 (659)
354 COG0396 sufC Cysteine desulfur 99.6 9.1E-16 2E-20 125.6 5.5 178 68-261 4-223 (251)
355 PRK10938 putative molybdenum t 99.6 2.1E-16 4.5E-21 148.5 1.5 178 67-262 260-482 (490)
356 PRK11147 ABC transporter ATPas 99.6 2.3E-16 5.1E-21 152.2 1.5 185 68-261 4-231 (635)
357 PRK10762 D-ribose transporter 99.6 2.3E-16 5.1E-21 148.4 1.1 173 67-261 257-473 (501)
358 TIGR01166 cbiO cobalt transpor 99.6 5.6E-16 1.2E-20 127.6 3.1 37 80-117 7-43 (190)
359 PRK15439 autoinducer 2 ABC tra 99.6 8.3E-16 1.8E-20 144.9 3.7 173 67-261 268-481 (510)
360 cd03238 ABC_UvrA The excision 99.6 1.3E-15 2.9E-20 123.3 4.1 139 80-260 10-165 (176)
361 KOG0054 Multidrug resistance-a 99.6 8.8E-16 1.9E-20 154.3 3.1 180 65-269 516-730 (1381)
362 TIGR03771 anch_rpt_ABC anchore 99.6 2E-15 4.3E-20 127.5 4.7 154 88-261 3-190 (223)
363 PRK13409 putative ATPase RIL; 99.6 8E-16 1.7E-20 146.6 2.5 167 71-258 77-286 (590)
364 TIGR01271 CFTR_protein cystic 99.6 7E-16 1.5E-20 160.5 2.3 170 67-261 428-625 (1490)
365 COG4615 PvdE ABC-type sideroph 99.6 1.1E-15 2.4E-20 133.8 2.8 178 65-264 320-529 (546)
366 COG4674 Uncharacterized ABC-ty 99.6 1.6E-16 3.4E-21 126.9 -3.0 175 67-261 5-224 (249)
367 PRK14731 coaE dephospho-CoA ki 99.5 5.3E-14 1.2E-18 117.4 11.8 178 92-276 5-204 (208)
368 PLN03073 ABC transporter F fam 99.5 7.6E-16 1.6E-20 149.4 0.4 184 65-261 175-419 (718)
369 PRK14733 coaE dephospho-CoA ki 99.5 6.7E-14 1.4E-18 115.6 11.8 175 92-276 6-200 (204)
370 COG4172 ABC-type uncharacteriz 99.5 1.8E-15 4E-20 132.8 2.5 181 67-264 6-239 (534)
371 TIGR01187 potA spermidine/putr 99.5 8.1E-16 1.8E-20 136.8 -0.7 147 97-261 1-179 (325)
372 PRK00081 coaE dephospho-CoA ki 99.5 1.3E-13 2.8E-18 113.8 12.3 173 92-274 2-193 (194)
373 PTZ00451 dephospho-CoA kinase; 99.5 2.1E-13 4.5E-18 115.7 13.4 184 93-281 2-214 (244)
374 PRK14732 coaE dephospho-CoA ki 99.5 8.6E-14 1.9E-18 114.8 10.4 178 94-278 1-194 (196)
375 PRK14730 coaE dephospho-CoA ki 99.5 2E-13 4.3E-18 112.7 11.1 172 93-273 2-193 (195)
376 COG0488 Uup ATPase components 99.5 3.8E-15 8.2E-20 139.0 0.0 183 68-260 4-227 (530)
377 PLN02422 dephospho-CoA kinase 99.5 3.4E-13 7.4E-18 113.3 11.8 178 93-276 2-196 (232)
378 PF00005 ABC_tran: ABC transpo 99.5 3.3E-15 7.2E-20 116.3 -1.0 116 81-213 1-135 (137)
379 TIGR00955 3a01204 The Eye Pigm 99.5 1.6E-14 3.5E-19 139.0 3.4 164 80-261 40-245 (617)
380 COG0488 Uup ATPase components 99.5 3E-14 6.4E-19 133.1 4.5 171 65-258 319-511 (530)
381 PTZ00243 ABC transporter; Prov 99.5 1.4E-14 3E-19 151.2 1.3 159 80-261 675-859 (1560)
382 KOG3220 Similar to bacterial d 99.5 1.4E-12 3E-17 104.6 12.2 181 92-278 1-198 (225)
383 PRK14734 coaE dephospho-CoA ki 99.4 5.7E-13 1.2E-17 110.4 9.9 179 93-277 2-197 (200)
384 TIGR00152 dephospho-CoA kinase 99.4 5E-13 1.1E-17 109.9 9.4 171 94-269 1-187 (188)
385 COG4136 ABC-type uncharacteriz 99.4 1.1E-13 2.3E-18 106.3 4.8 142 69-223 4-170 (213)
386 TIGR00956 3a01205 Pleiotropic 99.4 1E-14 2.2E-19 150.8 -1.4 175 68-261 760-982 (1394)
387 COG0237 CoaE Dephospho-CoA kin 99.4 1.2E-12 2.5E-17 107.9 10.8 174 92-278 2-196 (201)
388 COG4133 CcmA ABC-type transpor 99.4 6.7E-13 1.5E-17 105.6 7.9 130 69-213 4-157 (209)
389 cd03270 ABC_UvrA_I The excisio 99.4 5.6E-14 1.2E-18 118.8 0.8 72 183-261 135-222 (226)
390 COG4778 PhnL ABC-type phosphon 99.4 3.9E-13 8.5E-18 105.3 5.3 144 68-225 5-198 (235)
391 PF01121 CoaE: Dephospho-CoA k 99.4 4.1E-13 8.9E-18 109.0 4.0 161 93-263 1-180 (180)
392 PRK00698 tmk thymidylate kinas 99.4 5.2E-11 1.1E-15 99.0 16.2 174 91-275 2-203 (205)
393 TIGR01360 aden_kin_iso1 adenyl 99.3 1.7E-11 3.7E-16 100.4 12.9 171 92-274 3-187 (188)
394 TIGR00956 3a01205 Pleiotropic 99.3 1.4E-13 2.9E-18 142.6 0.4 179 80-274 76-304 (1394)
395 PRK01184 hypothetical protein; 99.3 8.6E-11 1.9E-15 96.2 16.9 94 182-277 80-181 (184)
396 PLN03140 ABC transporter G fam 99.3 9.1E-14 2E-18 143.8 -1.6 85 185-275 336-432 (1470)
397 KOG0927 Predicted transporter 99.3 8.6E-12 1.9E-16 113.4 9.9 194 66-275 388-605 (614)
398 PRK04040 adenylate kinase; Pro 99.3 7.3E-11 1.6E-15 96.8 14.1 70 203-272 110-187 (188)
399 PRK06762 hypothetical protein; 99.3 1.6E-10 3.5E-15 92.9 15.9 152 92-273 2-163 (166)
400 COG4178 ABC-type uncharacteriz 99.3 1.1E-12 2.3E-17 122.6 3.4 162 65-239 390-576 (604)
401 COG1245 Predicted ATPase, RNas 99.3 4.2E-12 9.1E-17 113.4 6.0 169 67-257 342-530 (591)
402 cd02022 DPCK Dephospho-coenzym 99.3 3.2E-11 6.8E-16 98.3 9.8 158 94-261 1-177 (179)
403 PRK05480 uridine/cytidine kina 99.3 1.4E-10 3.1E-15 96.9 13.9 86 184-273 108-207 (209)
404 cd00227 CPT Chloramphenicol (C 99.3 2.8E-10 6.1E-15 92.4 15.1 163 92-272 2-174 (175)
405 PLN03140 ABC transporter G fam 99.3 1.8E-12 3.9E-17 134.3 2.3 177 80-275 895-1119(1470)
406 KOG0059 Lipid exporter ABCA1 a 99.2 1.6E-12 3.5E-17 129.4 1.4 176 66-261 563-776 (885)
407 KOG0066 eIF2-interacting prote 99.2 5.7E-11 1.2E-15 105.8 10.1 187 67-275 586-800 (807)
408 KOG0060 Long-chain acyl-CoA tr 99.2 8.6E-12 1.9E-16 114.3 4.4 175 65-258 431-641 (659)
409 cd03279 ABC_sbcCD SbcCD and ot 99.2 6.1E-12 1.3E-16 105.4 2.9 76 179-260 117-210 (213)
410 cd03271 ABC_UvrA_II The excisi 99.2 7.7E-12 1.7E-16 107.4 3.4 72 183-261 167-255 (261)
411 PRK03333 coaE dephospho-CoA ki 99.2 1E-10 2.2E-15 106.5 9.9 172 93-274 2-192 (395)
412 KOG0061 Transporter, ABC super 99.2 6.6E-12 1.4E-16 120.2 2.1 162 80-260 45-248 (613)
413 PRK14530 adenylate kinase; Pro 99.2 1.4E-09 3E-14 91.3 15.2 169 92-274 3-213 (215)
414 cd01672 TMPK Thymidine monopho 99.2 1.1E-09 2.4E-14 90.3 14.4 70 203-273 125-199 (200)
415 cd03240 ABC_Rad50 The catalyti 99.2 1E-11 2.2E-16 103.3 2.0 80 171-257 101-196 (204)
416 PRK09825 idnK D-gluconate kina 99.1 3.6E-09 7.9E-14 85.9 16.3 163 92-276 3-170 (176)
417 PRK05541 adenylylsulfate kinas 99.1 3.6E-10 7.8E-15 91.8 10.0 160 91-274 6-172 (176)
418 PRK14531 adenylate kinase; Pro 99.1 2.6E-09 5.7E-14 87.3 14.8 164 93-272 3-182 (183)
419 KOG3079 Uridylate kinase/adeny 99.1 1.7E-09 3.6E-14 86.0 12.8 169 91-274 7-193 (195)
420 PRK13973 thymidylate kinase; P 99.1 6.7E-09 1.5E-13 87.0 17.3 174 92-277 3-209 (213)
421 PLN02200 adenylate kinase fami 99.1 4E-09 8.7E-14 89.5 15.6 169 92-276 43-226 (234)
422 COG1245 Predicted ATPase, RNas 99.1 6E-11 1.3E-15 106.1 4.5 168 72-257 79-287 (591)
423 COG1102 Cmk Cytidylate kinase 99.1 8.8E-09 1.9E-13 80.2 15.8 160 93-278 1-176 (179)
424 PRK13808 adenylate kinase; Pro 99.1 3.1E-09 6.8E-14 93.7 15.0 165 94-276 2-195 (333)
425 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 2.3E-09 4.9E-14 87.5 13.3 163 94-272 1-182 (183)
426 PRK14527 adenylate kinase; Pro 99.1 5.6E-09 1.2E-13 85.9 15.5 164 91-272 5-190 (191)
427 cd03274 ABC_SMC4_euk Eukaryoti 99.1 2.3E-11 5E-16 101.7 1.2 66 185-257 127-203 (212)
428 cd03278 ABC_SMC_barmotin Barmo 99.1 6.8E-12 1.5E-16 103.8 -2.6 34 82-117 14-47 (197)
429 COG4138 BtuD ABC-type cobalami 99.1 8.6E-12 1.9E-16 98.3 -2.0 145 81-240 15-195 (248)
430 PRK13946 shikimate kinase; Pro 99.1 5.7E-09 1.2E-13 85.4 14.3 162 92-278 10-180 (184)
431 TIGR01351 adk adenylate kinase 99.0 1.3E-08 2.8E-13 85.1 15.9 162 95-272 2-209 (210)
432 cd03272 ABC_SMC3_euk Eukaryoti 99.0 1.9E-10 4E-15 98.3 4.5 68 183-257 156-234 (243)
433 KOG0062 ATPase component of AB 99.0 3.8E-11 8.2E-16 108.7 0.1 155 65-235 78-253 (582)
434 KOG0927 Predicted transporter 99.0 8.7E-11 1.9E-15 107.0 2.3 53 64-117 72-126 (614)
435 PRK09270 nucleoside triphospha 99.0 8.1E-09 1.8E-13 87.5 14.2 52 205-257 162-221 (229)
436 COG0283 Cmk Cytidylate kinase 99.0 1.8E-09 3.9E-14 88.2 9.6 176 92-273 4-218 (222)
437 PRK00279 adk adenylate kinase; 99.0 1.1E-08 2.4E-13 85.8 14.6 165 94-274 2-214 (215)
438 KOG2355 Predicted ABC-type tra 99.0 7.4E-11 1.6E-15 95.4 1.3 188 65-262 11-227 (291)
439 PRK00131 aroK shikimate kinase 99.0 1.3E-08 2.8E-13 82.2 14.2 74 200-275 93-172 (175)
440 PRK08233 hypothetical protein; 99.0 2.6E-08 5.7E-13 81.0 16.0 26 92-117 3-28 (182)
441 PRK14532 adenylate kinase; Pro 99.0 8.9E-09 1.9E-13 84.5 12.8 164 94-273 2-186 (188)
442 PRK05057 aroK shikimate kinase 99.0 2.6E-08 5.7E-13 80.6 15.3 74 199-274 92-171 (172)
443 PLN02674 adenylate kinase 99.0 9E-09 2E-13 87.3 13.0 164 92-272 31-243 (244)
444 PRK02496 adk adenylate kinase; 99.0 1.5E-08 3.2E-13 82.9 13.5 164 93-272 2-182 (184)
445 TIGR00041 DTMP_kinase thymidyl 99.0 1.1E-08 2.4E-13 84.4 12.8 26 92-117 3-28 (195)
446 PRK14526 adenylate kinase; Pro 99.0 2E-08 4.3E-13 83.8 14.2 165 94-274 2-209 (211)
447 PLN02459 probable adenylate ki 99.0 1.8E-08 3.8E-13 86.0 13.7 168 92-276 29-253 (261)
448 COG0703 AroK Shikimate kinase 99.0 7.6E-09 1.6E-13 82.3 10.7 156 93-275 3-169 (172)
449 TIGR00235 udk uridine kinase. 99.0 3.9E-08 8.4E-13 82.0 15.6 30 88-117 2-31 (207)
450 PRK04182 cytidylate kinase; Pr 99.0 3.3E-08 7.1E-13 80.2 14.8 72 204-276 92-175 (180)
451 COG1936 Predicted nucleotide k 99.0 8.3E-08 1.8E-12 75.8 16.3 148 93-274 1-156 (180)
452 KOG3354 Gluconate kinase [Carb 99.0 9.2E-08 2E-12 74.0 15.8 158 92-273 12-187 (191)
453 PRK13949 shikimate kinase; Pro 99.0 2E-08 4.4E-13 81.0 13.1 25 93-117 2-26 (169)
454 PRK13948 shikimate kinase; Pro 98.9 1.4E-08 3E-13 82.7 12.0 163 90-276 8-177 (182)
455 PRK13974 thymidylate kinase; P 98.9 6.1E-08 1.3E-12 81.1 16.3 172 92-275 3-207 (212)
456 PLN02924 thymidylate kinase 98.9 3.7E-08 8E-13 82.7 14.9 174 90-277 14-206 (220)
457 COG0563 Adk Adenylate kinase a 98.9 2.1E-08 4.6E-13 81.3 12.8 165 94-272 2-177 (178)
458 PRK14529 adenylate kinase; Pro 98.9 6.1E-08 1.3E-12 81.3 15.9 163 94-272 2-222 (223)
459 PRK03839 putative kinase; Prov 98.9 6.2E-08 1.3E-12 78.9 15.5 146 94-276 2-155 (180)
460 PRK03846 adenylylsulfate kinas 98.9 1.2E-08 2.7E-13 84.4 11.4 160 91-274 23-192 (198)
461 COG3265 GntK Gluconate kinase 98.9 7.9E-08 1.7E-12 73.9 14.2 154 98-274 1-159 (161)
462 PRK14528 adenylate kinase; Pro 98.9 8.8E-08 1.9E-12 78.5 15.7 163 93-271 2-185 (186)
463 COG0125 Tmk Thymidylate kinase 98.9 6.5E-08 1.4E-12 80.2 14.7 175 91-276 2-205 (208)
464 PRK00889 adenylylsulfate kinas 98.9 1.1E-08 2.4E-13 82.9 10.0 160 91-274 3-170 (175)
465 TIGR01313 therm_gnt_kin carboh 98.9 1.3E-07 2.9E-12 75.6 15.5 156 95-272 1-161 (163)
466 PRK07933 thymidylate kinase; V 98.9 1.7E-07 3.7E-12 78.5 16.5 169 93-272 1-211 (213)
467 COG1129 MglA ABC-type sugar tr 98.9 2.5E-09 5.4E-14 98.4 5.8 173 68-262 264-480 (500)
468 PRK13975 thymidylate kinase; P 98.9 2.1E-07 4.5E-12 76.8 16.5 74 202-276 112-192 (196)
469 PRK13947 shikimate kinase; Pro 98.9 3E-08 6.4E-13 80.0 11.0 68 203-271 93-164 (171)
470 PRK08154 anaerobic benzoate ca 98.8 1.7E-07 3.6E-12 83.0 16.1 158 91-275 132-302 (309)
471 cd02023 UMPK Uridine monophosp 98.8 1.1E-07 2.5E-12 78.6 14.1 24 94-117 1-24 (198)
472 PRK06696 uridine kinase; Valid 98.8 3.9E-08 8.4E-13 83.0 11.0 27 91-117 21-47 (223)
473 cd02026 PRK Phosphoribulokinas 98.8 2.4E-08 5.2E-13 86.6 9.9 72 183-257 97-177 (273)
474 TIGR02173 cyt_kin_arch cytidyl 98.8 1.8E-07 3.8E-12 75.3 14.2 152 93-272 1-170 (171)
475 KOG0064 Peroxisomal long-chain 98.8 9.7E-10 2.1E-14 100.0 0.9 156 81-240 498-672 (728)
476 PRK06217 hypothetical protein; 98.8 1.1E-06 2.4E-11 71.8 18.6 104 93-226 2-105 (183)
477 COG4170 SapD ABC-type antimicr 98.8 9.9E-10 2.1E-14 89.2 0.3 166 80-259 22-235 (330)
478 PRK13976 thymidylate kinase; P 98.8 1.4E-07 3E-12 78.7 13.1 174 93-277 1-204 (209)
479 cd03276 ABC_SMC6_euk Eukaryoti 98.8 4.5E-09 9.8E-14 87.0 4.0 70 184-260 108-192 (198)
480 COG0572 Udk Uridine kinase [Nu 98.8 8.8E-08 1.9E-12 79.1 11.5 27 91-117 7-33 (218)
481 PRK00091 miaA tRNA delta(2)-is 98.8 6.1E-08 1.3E-12 85.2 11.0 118 92-225 4-130 (307)
482 COG2401 ABC-type ATPase fused 98.8 1.3E-08 2.8E-13 90.5 6.6 158 68-239 378-570 (593)
483 TIGR03574 selen_PSTK L-seryl-t 98.8 2E-07 4.2E-12 80.0 13.7 156 94-273 1-168 (249)
484 PHA02530 pseT polynucleotide k 98.8 2.2E-07 4.8E-12 81.9 14.3 149 92-263 2-171 (300)
485 PF13671 AAA_33: AAA domain; P 98.7 8.1E-08 1.8E-12 74.9 9.8 112 94-228 1-121 (143)
486 PF02223 Thymidylate_kin: Thym 98.7 9.4E-08 2E-12 78.3 10.5 160 97-268 1-186 (186)
487 TIGR00455 apsK adenylylsulfate 98.7 1.4E-07 3.1E-12 77.1 11.4 157 91-271 17-183 (184)
488 PRK13477 bifunctional pantoate 98.7 1.8E-07 3.9E-12 87.3 13.2 36 80-117 274-309 (512)
489 cd03275 ABC_SMC1_euk Eukaryoti 98.7 1E-08 2.2E-13 87.9 4.5 66 185-257 155-232 (247)
490 PRK00625 shikimate kinase; Pro 98.7 2.5E-07 5.4E-12 74.8 12.3 24 94-117 2-25 (173)
491 PRK03731 aroL shikimate kinase 98.7 2.7E-07 5.8E-12 74.5 12.1 71 199-273 89-169 (171)
492 cd03273 ABC_SMC2_euk Eukaryoti 98.7 3E-09 6.4E-14 91.4 0.5 65 185-256 166-241 (251)
493 PRK09518 bifunctional cytidyla 98.7 1.9E-07 4.2E-12 91.6 13.2 89 184-276 139-233 (712)
494 PRK00349 uvrA excinuclease ABC 98.7 5.7E-09 1.2E-13 103.8 2.5 43 67-113 614-656 (943)
495 PRK11545 gntK gluconate kinase 98.7 2.6E-07 5.5E-12 74.1 11.7 67 203-274 90-160 (163)
496 COG2019 AdkA Archaeal adenylat 98.7 6.1E-07 1.3E-11 70.4 13.2 72 203-274 109-188 (189)
497 PRK07429 phosphoribulokinase; 98.7 1.3E-07 2.8E-12 84.0 10.7 73 183-258 106-187 (327)
498 PLN02199 shikimate kinase 98.7 6.7E-07 1.5E-11 77.4 14.7 161 92-277 102-291 (303)
499 TIGR00017 cmk cytidylate kinas 98.7 4.6E-07 1E-11 76.0 13.2 25 93-117 3-27 (217)
500 cd01428 ADK Adenylate kinase ( 98.7 4.2E-07 9.1E-12 74.7 12.8 116 95-226 2-126 (194)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.9e-33 Score=220.82 Aligned_cols=183 Identities=42% Similarity=0.735 Sum_probs=174.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|.+++|.||||+|||||+++|.... .+.+++++|||+|+.|+++|.+|+|++.++|..++.++.|+|+..+++|+||+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 49999999999999999999998877 89999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
+...+++.+..|.+++++.+.|.....+..+ .+.+.||+.||+.+.+.+||..|+..+.+.|..|+..+..+......+
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~-p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~f 160 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKM-PNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEF 160 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHHHHHHHHhC-CCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998 478889999999999999999999999999999999999998888899
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
|.||+|++ ++.++.++..++...+.
T Consensus 161 dyvivNdd--~e~a~~~l~~ii~aer~ 185 (191)
T COG0194 161 DYVIVNDD--LEKALEELKSIILAERL 185 (191)
T ss_pred CEEEECcc--HHHHHHHHHHHHHHHHH
Confidence 99999998 99999999999988743
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.98 E-value=8.9e-31 Score=214.12 Aligned_cols=182 Identities=33% Similarity=0.597 Sum_probs=168.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|.+++|+||||||||||++.|...++.+.+.+++|||+|+.|+.+|.+|+|++.++|..++.++.|++++.+.+++||+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 48999999999999999999998887777888999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
+.+.+...+..|..++++++.+.+..++..+.+..++||+.+|+.+.+.+|+.+|+..+...+..|+..+..+.++...|
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~ 162 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEF 162 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999988764444789999999999999999998878899999999998888877899
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHH
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
|.||+|+ +++++..+|.+++..
T Consensus 163 D~vI~N~--dle~a~~ql~~ii~~ 184 (186)
T PRK14737 163 DYKIIND--DLEDAIADLEAIICG 184 (186)
T ss_pred CEEEECc--CHHHHHHHHHHHHhc
Confidence 9999987 499999999988864
No 3
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-30 Score=241.28 Aligned_cols=189 Identities=20% Similarity=0.275 Sum_probs=156.0
Q ss_pred chhhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c
Q 043263 63 PVNKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V 135 (286)
Q Consensus 63 ~~~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~ 135 (286)
...+.|+++||+|.|+. +|++++++++| |+++||+||||+||||++++|.++|+ |.+|. +
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p-Ge~vALVGPSGsGKSTiasLL~rfY~------------PtsG~Ill 527 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP-GEVVALVGPSGSGKSTIASLLLRFYD------------PTSGRILL 527 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEE
Confidence 35678999999999986 79999999999 99999999999999999999999998 88888 8
Q ss_pred CCcceeeeCHHHHHHHh---hccchh-----hhheecccccCccHHHHHHH------------HhcCCcEEE--------
Q 043263 136 NGKDYFFVSKEEFLQMV---DKNELL-----EYALVYGDYKGIPKKQIREY------------MAKGYDIVL-------- 187 (286)
Q Consensus 136 ~g~~~~~~~~~~~~~~i---~~~~~~-----~~~~~~~~~~~~~~~~i~~~------------~~~g~~~v~-------- 187 (286)
||.|+..++...++..+ .|...+ .+++.|+.. ..+.+++..+ +++|+++.+
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999888875 444432 334444443 4455665544 567777666
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|||+||++||||++++|.++|+ ||+.+|..+.+.|.+. .+.|...|+||+++ ++.||+|++.++|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST-------V~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST-------VRHADQIVVIDKGR 679 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH-------hhhccEEEEEcCCe
Confidence 6899999999999999999999 9999999998888653 44588999999999 79999999999999
Q ss_pred HHHH--HHHHHHHH
Q 043263 261 LDSA--VKLVESVI 272 (286)
Q Consensus 261 i~~~--~~~l~~~i 272 (286)
+.|. .+++.+.-
T Consensus 680 V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 680 VVEMGTHDELLSKP 693 (716)
T ss_pred EEecccHHHHhhCc
Confidence 9776 56665543
No 4
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.95 E-value=2.8e-26 Score=188.00 Aligned_cols=181 Identities=40% Similarity=0.625 Sum_probs=164.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+.+++|+||+||||+|+++.|...++ .+..++.+|||+++.|+.+|.+|+|++.++|..++..+.|+++..+.++.|++
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 67899999999999999999988765 68999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
+.+.+.+++..|..++++++.+.+..++... ..+++||+.+++.+.+.+|+.+|+..+...+..|+..+..+......+
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~-~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~f 160 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQ-LYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLF 160 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999998888765 556899999999999999999998778899999999877665545779
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
|.+|++++ +++++++|.+++...
T Consensus 161 d~~I~n~~--l~~~~~~l~~~i~~~ 183 (184)
T smart00072 161 DYVIVNDD--LEDAYEELKEILEAE 183 (184)
T ss_pred CEEEECcC--HHHHHHHHHHHHHhc
Confidence 99999875 999999999998753
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.95 E-value=1.8e-26 Score=189.08 Aligned_cols=182 Identities=40% Similarity=0.657 Sum_probs=159.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
++++++|+||+|||||||++.|...++ .+...+.+|||+|+.|+.+|.+|+|++.++|..++..+.|+++..+.++.||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 378899999999999999999987665 6889999999999999999999999999999999999999999998899999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~ 249 (286)
++.+.+..++.+|..++++++.+.+..++.. ...+++||+.+++.+.+.+|+.+++..+...+..|+.....+......
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~ 159 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNE 159 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGG
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhc-ccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhc
Confidence 9999999999999999999999999888876 578899999999999999999888766677788888887776665555
Q ss_pred CcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 250 FDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 250 ~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
+|.||+|++ +++++.+|.++|+..
T Consensus 160 fd~vi~n~~--le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 160 FDYVIVNDD--LEEAVKELKEIIEQE 183 (183)
T ss_dssp SSEEEECSS--HHHHHHHHHHHHHHH
T ss_pred CCEEEECcC--HHHHHHHHHHHHHhC
Confidence 999998764 999999999999763
No 6
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.95 E-value=2.3e-25 Score=185.57 Aligned_cols=189 Identities=52% Similarity=0.893 Sum_probs=163.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263 89 PPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 89 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
+.++.+++|+||||||||||++.|......+.+.+.++||+++.|+.+|.++++++.++|..++..+.|+++..++++.|
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 33689999999999999999999987666788999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcE-EEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Q 043263 169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAV-FVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV 247 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~-~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~ 247 (286)
|++.+.+..+++.|..++++++.+.+..++... |+. ++|+.+++.+.+.+|+..|+..+...+..|+.....+....
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~--pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~ 167 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLV--PEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL 167 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhC--CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988888765 444 45555677889999999987767788889998876665545
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263 248 KNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV 279 (286)
Q Consensus 248 ~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~ 279 (286)
..+|.++++.+++++++.+++.+++...+.+.
T Consensus 168 ~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~ 199 (206)
T PRK14738 168 PEFDYVVVNPEDRLDEAVAQIMAIISAEKSRV 199 (206)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 56789999988889999999999999875333
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=5.7e-28 Score=236.10 Aligned_cols=187 Identities=22% Similarity=0.299 Sum_probs=154.7
Q ss_pred chhhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c
Q 043263 63 PVNKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V 135 (286)
Q Consensus 63 ~~~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~ 135 (286)
...+.|+++||+|.|+. +|+++++.+.+ |+.+||+|||||||||++.+|.++|+ |..|. +
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~-GqTvALVG~SGsGKSTvI~LLeRfYd------------p~~G~V~I 1049 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRA-GQTVALVGPSGSGKSTVISLLERFYD------------PDAGKVKI 1049 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEE
Confidence 35567999999999986 69999999998 99999999999999999999999998 88887 8
Q ss_pred CCcceeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHHH------------HhcCCcEEE--------
Q 043263 136 NGKDYFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIREY------------MAKGYDIVL-------- 187 (286)
Q Consensus 136 ~g~~~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~~------------~~~g~~~v~-------- 187 (286)
||.|+..++...++..+ .|.+.+.+ ++.+|.. ..+.+++.++ +++|+++.+
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 99999999999998865 44444333 3344422 2566666655 678888776
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|||+||++||||++++|.+++| ||..||..+++.|.+ +.+.|..+|+||+++ +++||.|+|+++|+
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST-------IqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST-------IQNADVIAVLKNGK 1201 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh-------hhcCCEEEEEECCE
Confidence 5799999999999999999999 999999999998876 445689999999999 79999999999998
Q ss_pred HHH--HHHHHHH
Q 043263 261 LDS--AVKLVES 270 (286)
Q Consensus 261 i~~--~~~~l~~ 270 (286)
+.| +.++|..
T Consensus 1202 VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1202 VVEQGTHDELLA 1213 (1228)
T ss_pred EEecccHHHHHh
Confidence 754 4555544
No 8
>PLN02772 guanylate kinase
Probab=99.94 E-value=7.2e-25 Score=194.29 Aligned_cols=183 Identities=31% Similarity=0.469 Sum_probs=164.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
++++++|+||||||||||++.|...++ .+.+++.+|||+|+.|+.+|.+|+|.+.++|..++.++.|+++..+++++||
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 467999999999999999999988765 5788999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc---
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQH--- 246 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~--- 246 (286)
++.+.++.++++|..++++.+.|.+..++... ...++||+.+++.+.+.+||..|+..+.+.|..|+..+..+.+.
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~ 292 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKS 292 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999988887765 45688889999999999999999888899999999988665543
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
...+|.+|+|++ +++++++|.+++....
T Consensus 293 ~~~fD~vIvNDd--Le~A~~~L~~iL~~~~ 320 (398)
T PLN02772 293 SGIFDHILYNDN--LEECYKNLKKLLGLDG 320 (398)
T ss_pred cCCCCEEEECCC--HHHHHHHHHHHHhhcC
Confidence 347999999885 9999999999987644
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=5e-27 Score=193.64 Aligned_cols=176 Identities=19% Similarity=0.230 Sum_probs=142.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
|+++||+|.|+. +++++++.++. |++++++|||||||||+++|+.+++. |++|+ ++|+++...
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~-gef~vliGpSGsGKTTtLkMINrLie------------pt~G~I~i~g~~i~~~ 68 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEE-GEFLVLIGPSGSGKTTTLKMINRLIE------------PTSGEILIDGEDISDL 68 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecC-CeEEEEECCCCCcHHHHHHHHhcccC------------CCCceEEECCeecccC
Confidence 678999999997 89999999998 99999999999999999999999987 88888 899999988
Q ss_pred CHHHHHHH----hhccchhhhheeccc------ccCccHHHHHHH---------------HhcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEEFLQM----VDKNELLEYALVYGD------YKGIPKKQIREY---------------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~~~~~----i~~~~~~~~~~~~~~------~~~~~~~~i~~~---------------~~~g~~~v~~~~~q~v~iar 198 (286)
+..+++.. +++..++.|.++..| +.+.+++.+.+. ..+-..-++|||.||+.++|
T Consensus 69 d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred CHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHH
Confidence 88777664 366666655555544 334444443332 23334668899999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERL---VERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|+..+|+++++ |||-++..+++-+ .+.-+.|...++|+++.+ .+.+|+|.++++|.+.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA------~kLadri~vm~~G~i~ 215 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA------LKLADRIAVMDAGEIV 215 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH------HhhhceEEEecCCeEE
Confidence 99999999998 9998888887654 444556888899999998 6999999999999763
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.93 E-value=9.9e-28 Score=229.58 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=152.4
Q ss_pred chhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263 63 PVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN 136 (286)
Q Consensus 63 ~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~ 136 (286)
.....++++||+|.|+. .|.++++.+++ |+.|||+|+||||||||+|+|.|++. |..|. +|
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~-Ge~vaIvG~SGsGKSTL~KLL~gly~------------p~~G~I~~d 533 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPP-GEKVAIVGRSGSGKSTLLKLLLGLYK------------PQQGRILLD 533 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence 44667999999999975 68999999999 99999999999999999999999997 88887 89
Q ss_pred CcceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------Ee
Q 043263 137 GKDYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RV 189 (286)
Q Consensus 137 g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~ 189 (286)
|.|+..++...+++.+ .|+.++.+.....|+. ..+.+++.++ ++.|+++.+ +|
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 9999999999998875 6666655544444421 2333444333 455665544 68
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|+||+++||+++.+|+++|| ||+.++..+.+.|.+.. +.|.+.|+||+++ ++.||+|+|+++|++.
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t-------i~~adrIiVl~~Gkiv 686 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST-------IRSADRIIVLDQGKIV 686 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH-------hhhccEEEEccCCcee
Confidence 99999999999999999999 99999999999998853 4588999999999 6999999999999874
Q ss_pred HH--HHHHHH
Q 043263 263 SA--VKLVES 270 (286)
Q Consensus 263 ~~--~~~l~~ 270 (286)
+. .+++.+
T Consensus 687 ~~gs~~ell~ 696 (709)
T COG2274 687 EQGSHEELLA 696 (709)
T ss_pred ccCCHHHHHH
Confidence 43 444443
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=3.4e-27 Score=230.77 Aligned_cols=229 Identities=23% Similarity=0.290 Sum_probs=165.2
Q ss_pred cccceeeeeeccCCCcccccCCCCChhhHHHHHhhccCCCCCccccccccccccccccchhhHHHhHhHHHHhcc-----
Q 043263 5 LSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGH----- 79 (286)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~----- 79 (286)
+...++|.|.++-.+.++.++.... +.+. .+...|+.-... .. .....+....++++||+|+|+.
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~--~I~~----~i~~~~~i~~~~-~~---~~~~~~~~g~ief~nV~FsYPsRpdv~ 367 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAY--RIFE----TIDRKPSIDPYS-KG---GRVLSSIKGEIEFRNVCFSYPSRPDVK 367 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchH--HHHH----HhcCCCCCCccc-cc---CCcccccccceEEEEEEecCCCCCcch
Confidence 4455677777777776655554222 2222 222333222211 11 1122345667999999999986
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DK 154 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~ 154 (286)
+|.++++.+++ |++++|+|||||||||++++|.++|+ |..|+ +||.|+..++...++..+ .|
T Consensus 368 Il~g~sl~i~~-G~~valVG~SGsGKST~i~LL~Rfyd------------P~~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 368 ILKGVSLKIPS-GQTVALVGPSGSGKSTLIQLLARFYD------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred hhCCeEEEeCC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCceEEEcCccchhcchHHHHhhcCeeee
Confidence 68999999999 99999999999999999999999998 88888 899999988888888765 44
Q ss_pred cchhhhheecccc-cC---ccHHHHHHH------------HhcCCcEE--------EEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 155 NELLEYALVYGDY-KG---IPKKQIREY------------MAKGYDIV--------LRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 155 ~~~~~~~~~~~~~-~~---~~~~~i~~~------------~~~g~~~v--------~~~~~q~v~iaral~~~~~~~Il- 209 (286)
.+.+....+..|+ || .+.+++.++ +++|+++. .|||+||+++||+++++|++++|
T Consensus 435 ePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD 514 (1228)
T ss_pred chhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence 4444333333331 22 334444443 45555554 46899999999999999999999
Q ss_pred -----EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 210 -----LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
||+.++..+++.|.+- .+.|..+|+||+++ ++.||.|+++++|++.|
T Consensus 515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLSt-------IrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLST-------IRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhh-------hhccCEEEEEECCEEEE
Confidence 9999999998888763 44588999999999 68899999999998643
No 12
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.93 E-value=5.6e-24 Score=177.35 Aligned_cols=184 Identities=45% Similarity=0.764 Sum_probs=162.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|++++|+||||||||||+++|++.++.+...+.+++|+|..|+++|.++.+++.+++...+.++.+++...++++.|+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 49999999999999999999999998777888889999999999999999999999999998888898888888999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
..+.+...+..|..++++++.+....++..+. ....|++.+++.+.+.+|+.+|+..+...+..|+..+..+.++...+
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~ 162 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDWQGARQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEY 162 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999988877777664 45777777777999999999998778899999999888777666789
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
|.+++++ +++++..++.+++.....
T Consensus 163 d~vi~n~--~~e~~~~~l~~il~~~~~ 187 (205)
T PRK00300 163 DYVIVND--DLDTALEELKAIIRAERL 187 (205)
T ss_pred CEEEECC--CHHHHHHHHHHHHHHHHh
Confidence 9999855 599999999999998743
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.93 E-value=1.2e-23 Score=171.77 Aligned_cols=179 Identities=47% Similarity=0.767 Sum_probs=157.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
|++++|+|||||||||+++.|++.++.+...+.+++|+|..|+.+|.++++++.+.+...+..+.+++...+.++.|+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 67999999999999999999999887777888899999999999999999999999998888888988888889999999
Q ss_pred HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 172 KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 172 ~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
.+.+.+++.+|..++++++...+..++..+ .....|++.+++.+.+.+|+.+|+..+...+..|+..+..+.++...||
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d 159 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKF-PDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFD 159 (180)
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCc
Confidence 999999999999999999988887776666 3456777777779999999999987788889999998887777778899
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q 043263 252 YVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 252 ~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.+|+|++ +++++++|.+++.
T Consensus 160 ~~i~n~~--~~~~~~~l~~~~~ 179 (180)
T TIGR03263 160 YVIVNDD--LEKAVEELKSIIL 179 (180)
T ss_pred EEEECCC--HHHHHHHHHHHHh
Confidence 9998864 9999999998874
No 14
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-26 Score=206.12 Aligned_cols=180 Identities=17% Similarity=0.286 Sum_probs=143.1
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
.++|+++||+|.|.. .++++++.+++ |++++|+||||+||||++++|.++++ ..+|. +||+|
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~p-GktvAlVG~SGaGKSTimRlLfRffd------------v~sGsI~iDgqd 601 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQP-GKTVALVGPSGAGKSTIMRLLFRFFD------------VNSGSITIDGQD 601 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecC-CcEEEEECCCCCchhHHHHHHHHHhh------------ccCceEEEcCch
Confidence 467999999999975 79999999999 99999999999999999999999998 55555 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGYDI--------VLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~~~--------v~~~~~q 192 (286)
+..++...++..+ +|+..+.|.+.+-|+ | ..+.+++.++ .++|+.+ ++||++|
T Consensus 602 Irnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 602 IRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 9999999998875 777766555444442 2 2233443332 3445544 4468999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
|+++||++++.|.++++ ||.++|..++..|.+. .+.|.++++||+++ +-.||.|++.++|.|.|.
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLST-------ivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLST-------IVNADLILVISNGRIVER 753 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehh-------eecccEEEEEeCCeEeec
Confidence 99999999977777777 8888888888777764 34588899999999 789999999999987553
No 15
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-26 Score=206.81 Aligned_cols=184 Identities=20% Similarity=0.332 Sum_probs=146.9
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
+..|+++||+|.|+. +|.++++.+|+ |+.|||+|+|||||||++|+|.++++ .+|+ +||++
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~k-GekVaIvG~nGsGKSTilr~LlrF~d-------------~sG~I~IdG~d 414 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPK-GEKVAIVGSNGSGKSTILRLLLRFFD-------------YSGSILIDGQD 414 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecC-CCEEEEECCCCCCHHHHHHHHHHHhc-------------cCCcEEECCee
Confidence 345999999999986 79999999998 99999999999999999999999985 3555 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHHH------------HhcCCcEE--------EEeCH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIREY------------MAKGYDIV--------LRVDI 191 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~~------------~~~g~~~v--------~~~~~ 191 (286)
+..++.+.++..+ +|+..+.| +..+++... +.+++.++ +++|+.+. ++||+
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred HhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 9999999999876 66665444 344444332 23333222 45565544 47899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH-
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS- 263 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~- 263 (286)
|+++++|++++++++++| ||..+|..+.+-++. .++.|.+.|.||++. ++.||.|+++++|++.+
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l-------l~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL-------LKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh-------HhcCCEEEEEECCeeEEe
Confidence 999999999999999999 999999999998887 455689999999999 68999999999997633
Q ss_pred -HHHHHHH
Q 043263 264 -AVKLVES 270 (286)
Q Consensus 264 -~~~~l~~ 270 (286)
..+++..
T Consensus 567 gth~ell~ 574 (591)
T KOG0057|consen 567 GTHSELLA 574 (591)
T ss_pred ccHHHHhh
Confidence 3444444
No 16
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=7.1e-26 Score=182.97 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=128.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
|+++||+++||. +|+++++.+.+ |++++|+|||||||||++++|.++-. |++|. ++|.++...
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~-Gevv~iiGpSGSGKSTlLRclN~LE~------------~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEK-GEVVVIIGPSGSGKSTLLRCLNGLEE------------PDSGSITVDGEDVGDK 69 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcC-CCEEEEECCCCCCHHHHHHHHHCCcC------------CCCceEEECCEeccch
Confidence 678899999997 89999999998 99999999999999999999999875 77887 788655322
Q ss_pred -CHHHHHHH----hhccchhhhheecccc-------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHH
Q 043263 144 -SKEEFLQM----VDKNELLEYALVYGDY-------KGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 -~~~~~~~~----i~~~~~~~~~~~~~~~-------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iar 198 (286)
+...++.. +++-.++.+.++..|. .+.++++.++. .......++|||.||++|||
T Consensus 70 ~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR 149 (240)
T COG1126 70 KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR 149 (240)
T ss_pred hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH
Confidence 22333332 2444445554444442 23344333222 23344678899999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.-+|++++| |||.....+.+-+.+. .+.|...++|.+..+ .+.||+|+.+++|.+
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA------r~VadrviFmd~G~i 214 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA------REVADRVIFMDQGKI 214 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH------HHhhheEEEeeCCEE
Confidence 99989999998 7776666665555543 345778889999887 478999999999943
No 17
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=5.6e-26 Score=216.62 Aligned_cols=185 Identities=23% Similarity=0.321 Sum_probs=146.7
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. .++++++.+++ |+++||+|||||||||++++|.++++ |++|+ +||.|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~-Ge~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~dI 393 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEP-GEKVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGIDI 393 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCEeh
Confidence 45999999999983 79999999998 99999999999999999999999998 77887 789999
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc-cC---ccHHHHHHH------------HhcCCcEEEE--------eCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY-KG---IPKKQIREY------------MAKGYDIVLR--------VDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~~---~~~~~i~~~------------~~~g~~~v~~--------~~~q~ 193 (286)
...+.+.++..+ .|+.++.+.++..|+ ++ .+.+++.++ +++|+++.++ ||+||
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 999999888875 566654444444432 12 344444443 3557777775 78999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH--H
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS--A 264 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~--~ 264 (286)
+++||+++++|+++|| +|+.++..+.+.+.+. .+.|...|+||+++ .+.||+|+|+++|++.+ .
T Consensus 474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlst-------i~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST-------IKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhH-------HHhCCEEEEEECCEEEEecC
Confidence 9999999999999999 9999999998888743 23377779999999 57899999999997522 3
Q ss_pred HHHHHH
Q 043263 265 VKLVES 270 (286)
Q Consensus 265 ~~~l~~ 270 (286)
.+++.+
T Consensus 547 h~eLl~ 552 (567)
T COG1132 547 HEELLA 552 (567)
T ss_pred HHHHHH
Confidence 444433
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=9.7e-26 Score=190.21 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=130.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +++++++.+++ |++++|+||||||||||+|+|++++. |..|+ ++|+++...
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~-G~i~~iiGpNG~GKSTLLk~l~g~l~------------p~~G~V~l~g~~i~~~ 69 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPK-GEITGILGPNGSGKSTLLKCLAGLLK------------PKSGEVLLDGKDIASL 69 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecC-CcEEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCCchhhc
Confidence 567899999987 89999999998 99999999999999999999999986 88888 899999888
Q ss_pred CHHHHHHHh---hccc-hhhhhee-----ccc-----ccC-cc---HHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 144 SKEEFLQMV---DKNE-LLEYALV-----YGD-----YKG-IP---KKQIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~~~~~~i---~~~~-~~~~~~~-----~~~-----~~~-~~---~~~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
+..++.+.+ +|.. ..+...+ ++. +.. .+ .+.+.++ ..+....++|||+|++.+
T Consensus 70 ~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 70 SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLI 149 (258)
T ss_pred CHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHH
Confidence 888877754 3331 2111111 111 111 11 2223333 344567788999999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++++ ||......+.+-+++ ..+.|...+.|+++.+ .++||+++++++|++
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A------~ryad~~i~lk~G~i 217 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA------ARYADHLILLKDGKI 217 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCeE
Confidence 9999988887776 555555555555443 3355788889999988 699999999998865
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.2e-25 Score=196.73 Aligned_cols=178 Identities=21% Similarity=0.298 Sum_probs=131.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.||. .++++++.+.. |++++|+|||||||||++++|+|+.. |++|+ ++|.++..+
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~-Gef~vllGPSGcGKSTlLr~IAGLe~------------~~~G~I~i~g~~vt~l 70 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIED-GEFVVLLGPSGCGKSTLLRMIAGLEE------------PTSGEILIDGRDVTDL 70 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCCC
Confidence 678999999997 79999999998 99999999999999999999999987 88888 889988887
Q ss_pred CHHHHH--HHhhccchhhhheecccc------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263 144 SKEEFL--QMVDKNELLEYALVYGDY------KGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 144 ~~~~~~--~~i~~~~~~~~~~~~~~~------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~ 202 (286)
++++-. ..+++..+..+.+++.|+ .+.+++++.+. +.+....+++||.||++++|+++.
T Consensus 71 ~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 71 PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred ChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 776522 122555555555555552 23344443332 555667888999999999999998
Q ss_pred CCcEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 203 DSAVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
+|.+++| ||+.....+.. ++.++-+.|...++|+...+ ...+|+|.++++|.+++.
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA------mtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA------MTLADRIVVMNDGRIQQV 215 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH------HhhCCEEEEEeCCeeeec
Confidence 8886555 33333333332 23344445677778877776 589999999999987554
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.4e-25 Score=184.64 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=125.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.+++|++.|+. +|.++++.+.+ |++++|+||||||||||+++++|+.. |..|+ ++|..+ .-
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~-GEfvsilGpSGcGKSTLLriiAGL~~------------p~~G~V~~~g~~v-~~ 69 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEK-GEFVAILGPSGCGKSTLLRLIAGLEK------------PTSGEVLLDGRPV-TG 69 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCccc-CC
Confidence 567888899986 89999999998 99999999999999999999999987 66666 566544 11
Q ss_pred CHHHHHHHhhccchhhhheeccccc------CccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYK------GIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
.......++++..++.+.++.+|.. +...+ .+.+.+ ......++||.+||+++||+++.+|
T Consensus 70 p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCC
Confidence 2222223335555555555555521 22221 222222 2234567889999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 205 AVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
+++++ ||+-+...+.+-+. ++.+.|...|+|.++.+ +..+|+|+++.++
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA------v~LsdRivvl~~~ 207 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEA------VYLADRVVVLSNR 207 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HhhhCEEEEecCC
Confidence 88888 88877777766544 34456888999999998 6899999999984
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=2e-25 Score=196.21 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=129.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +++++++.+.+ |++++|+|||||||||++++|+|+.. |++|+ ++|+++..
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~-Gef~~lLGPSGcGKTTlLR~IAGfe~------------p~~G~I~l~G~~i~~ 71 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKK-GEFVTLLGPSGCGKTTLLRMIAGFEQ------------PSSGEILLDGEDITD 71 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCC
Confidence 4778999999996 79999999998 99999999999999999999999986 88887 88999887
Q ss_pred eCHHH--HHHHhhccchhhhheecccc-cCc------cHHHH----HHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263 143 VSKEE--FLQMVDKNELLEYALVYGDY-KGI------PKKQI----REY---------MAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 143 ~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~------~~~~i----~~~---------~~~g~~~v~~~~~q~v~iaral 200 (286)
+++.. +...+++..++.|..++.|. |++ ..+++ .++ ..+...-+++||.||+++|||+
T Consensus 72 lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 72 VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred CChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh
Confidence 77654 33345666777777666662 222 22222 222 2233356778999999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 201 LGDSAVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
..+|.++++ ||..-++.+.. ++.+..+.|.+.++|+...+ ...+|+|+|+++|++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA------l~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA------LAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH------hhhccceEEccCCceee
Confidence 966666655 33332223322 22233345677778887776 68999999999998744
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=2.7e-24 Score=176.39 Aligned_cols=178 Identities=22% Similarity=0.254 Sum_probs=135.3
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+..|++++|+++||. +++++++.+++ |++++|+|||||||||++|++.|++. |+.|+ ++|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~-Gei~~iiGgSGsGKStlLr~I~Gll~------------P~~GeI~i~G~~i 72 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPR-GEILAILGGSGSGKSTLLRLILGLLR------------PDKGEILIDGEDI 72 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecC-CcEEEEECCCCcCHHHHHHHHhccCC------------CCCCeEEEcCcch
Confidence 346899999999998 89999999998 99999999999999999999999986 89998 899999
Q ss_pred eeeCHHHHHHH-------hhccchhhhheecccc-------cCccHHHHHHH--------------HhcCCcEEEEeCHH
Q 043263 141 FFVSKEEFLQM-------VDKNELLEYALVYGDY-------KGIPKKQIREY--------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 141 ~~~~~~~~~~~-------i~~~~~~~~~~~~~~~-------~~~~~~~i~~~--------------~~~g~~~v~~~~~q 192 (286)
...+.++...+ ++++.++....++.|. ...+++.+++. ...-..-+++|-..
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRK 152 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHH
Confidence 88887654333 3566665555555552 23444444443 12223457788889
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMA---LVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~---l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++|||+..+|++++| |||-+... ++.+|++.-+.|..+++|++.+. ...||+|+++.+|++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~------~~i~Drv~~L~~gkv 224 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL------LTIADRVAVLADGKV 224 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH------HhhhceEEEEeCCEE
Confidence 99999999988887777 66665544 44455555556888999999987 578999999988764
No 23
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.90 E-value=4.3e-25 Score=214.83 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=140.5
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|+|+. .|+++++.+++ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEP-GEFVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEE
Confidence 46899999999952 79999999998 99999999999999999999999997 88887 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc-C--ccHHHHHHH------------HhcCCcE--------EEEeCHHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK-G--IPKKQIREY------------MAKGYDI--------VLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~-~--~~~~~i~~~------------~~~g~~~--------v~~~~~q~ 193 (286)
+...+.+.++..+ .|+.++.+.+...|+. + .+.+++.++ ++.|.++ +++||+||
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 9888998888765 4554433333333321 1 344444333 3445554 45689999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+++||+++++|+++|| ||+.+++.+.+.|.+.+ .|...++||++. ...||+|+++++|++.
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~-~T~IiItHr~~~-------i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK-VTRIVIAHRLST-------IRNADRIYVLDAGRVV 663 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC-CeEEEEecChHH-------HHcCCEEEEEECCEEE
Confidence 9999999999999999 88888999999988774 488889999988 5789999999999764
No 24
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=5e-25 Score=215.26 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=141.0
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
...++++||+|+|+. +|+++++.+++ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~ 541 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQP-GQRVALVGGSGSGKSTIAKLVAGLYQ------------PWSGEILFDGI 541 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 346899999999973 69999999998 99999999999999999999999997 78887 8999
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~~~ 191 (286)
++...+..+++..+ .|+.++.+.++..|+. ..+.+++.++ ++.|.++.+ +||+
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 99888888888765 4555443433333321 2334444333 344555544 5899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||+++++|+++|| ||+.++..+.+.|.+. +.|...++||++. +..||+|+++++|++.
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~-~~T~IiitHrl~~-------i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR-GCTCIIVAHRLST-------IRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc-CCEEEEEecCHHH-------HHhCCEEEEEeCCEEE
Confidence 999999999999999999 8888888999998875 4588899999998 5789999999999874
No 25
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-24 Score=194.27 Aligned_cols=176 Identities=17% Similarity=0.233 Sum_probs=140.0
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++||+|+|++ +|+++++.+.+ |+.|+|+|+|||||||++++|++.++ |++|+ .+|.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~-GEkvAIlG~SGsGKSTllqLl~~~~~------------~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQ-GEKVAILGRSGSGKSTLLQLLAGAWD------------PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecC-CCeEEEECCCCCCHHHHHHHHHhccC------------CCCCeeeECCcCh
Confidence 5899999999986 79999999998 99999999999999999999999997 88888 788888
Q ss_pred eeeCHHHHHHHh---hccch-----hhhheecccccCccHHHHHHH--------------------HhcCCcEEEEeCHH
Q 043263 141 FFVSKEEFLQMV---DKNEL-----LEYALVYGDYKGIPKKQIREY--------------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~-----~~~~~~~~~~~~~~~~~i~~~--------------------~~~g~~~v~~~~~q 192 (286)
...+.+.+++.+ .|... +.++...++.. .+.+++.++ +.++...++||++|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 877776666544 23222 22333333332 344443333 44455667789999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
|+++||.++++.+++|+ ||+.++..+.+++.++ .+.|...|+||+.- .+.||+|+++++|++.+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~-------le~~drIivl~~Gkiie 552 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG-------LERMDRIIVLDNGKIIE 552 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc-------HhhcCEEEEEECCeeee
Confidence 99999999999999999 9999999999999876 34588899999998 68999999999997643
No 26
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=7.1e-25 Score=210.01 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=137.5
Q ss_pred HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.++++||+|.|. . +|+++++.+++ |++++|+|+||||||||+++|+|++ |.+|+ ++|.++.
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~-G~~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g~~i~ 414 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPA-GQRIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKINGIELR 414 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECCEecc
Confidence 589999997553 3 79999999998 9999999999999999999999997 44565 7899998
Q ss_pred eeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcEEE--------EeCHHHH
Q 043263 142 FVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDIVL--------RVDIQGA 194 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~v~--------~~~~q~v 194 (286)
..+.+.++..+ .|+.++.+.++..|+ ...+.+++.++ +++|+++.+ +||+||+
T Consensus 415 ~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi 494 (588)
T PRK11174 415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494 (588)
T ss_pred cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 88888888765 555554433333331 12344444443 455666554 5799999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++||+++++|+++|| ||+.++..+.+.|.+. .+.|...|+||++. ...||+|+++++|++.
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~-------i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED-------LAQWDQIWVMQDGQIV 562 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHH-------HHhCCEEEEEeCCeEe
Confidence 999999999999999 8888898998888775 44588899999988 5789999999998764
No 27
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-24 Score=184.03 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=132.5
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
|++++|++.|+. +++++++.+++ |+++||+|.||||||||++++.++-. |++|. ++|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~-GeI~GIIG~SGAGKSTLiR~iN~Le~------------PtsG~v~v~G~ 68 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPK-GEIFGIIGYSGAGKSTLLRLINLLER------------PTSGSVFVDGQ 68 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcC-CcEEEEEcCCCCcHHHHHHHHhccCC------------CCCceEEEcCE
Confidence 456788887763 68899999998 99999999999999999999999865 88888 8999
Q ss_pred ceeeeCHHHHHHHhh-------ccchhhhheeccc------ccCccHHHHHHH-------------HhcCCcEEEEeCHH
Q 043263 139 DYFFVSKEEFLQMVD-------KNELLEYALVYGD------YKGIPKKQIREY-------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 139 ~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~------~~~~~~~~i~~~-------------~~~g~~~v~~~~~q 192 (286)
++..++...++...+ .-.++...++++| +.+.+++++++. ......-+++||+|
T Consensus 69 di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ 148 (339)
T COG1135 69 DLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ 148 (339)
T ss_pred ecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh
Confidence 998888777766432 2222222333333 234555555443 22233567899999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++||||+..+|.+++. |||.+...+.+.|.+ +-+.|+..|+|.++.. .+.||+|.|+++|++
T Consensus 149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vv------k~ic~rVavm~~G~l 220 (339)
T COG1135 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV------KRICDRVAVLDQGRL 220 (339)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHH------HHHhhhheEeeCCEE
Confidence 99999999988888887 888888877776653 4456888899999875 378999999999875
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=1.7e-24 Score=222.95 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=150.3
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcce-------------------
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH------------------- 120 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~------------------- 120 (286)
...|+++||+|+|+. +|+++++.+++ |+++||+|+|||||||++++|.++|+...
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~-G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDS-KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcC-CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 346999999999952 69999999998 99999999999999999999999997420
Q ss_pred -----------------------eeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hccchhhhheecccc-c---
Q 043263 121 -----------------------FVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKNELLEYALVYGDY-K--- 168 (286)
Q Consensus 121 -----------------------~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~--- 168 (286)
......++.|.+|+ ++|.|+..++...++..+ .|+.++.+.++..|+ +
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 11112334457888 899999999988888765 566554444333331 1
Q ss_pred CccHHHHHHH------------HhcCCcEEE--------EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHH
Q 043263 169 GIPKKQIREY------------MAKGYDIVL--------RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERL 222 (286)
Q Consensus 169 ~~~~~~i~~~------------~~~g~~~v~--------~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl 222 (286)
..+.+++.++ +++|+++.+ +||+||+++|||++++|+++|| ||+.++..+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 2345555443 456666555 5799999999999999999999 9999999998888
Q ss_pred HHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC----CC-H--HHHHHHHH
Q 043263 223 VER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE----GK-L--DSAVKLVE 269 (286)
Q Consensus 223 ~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~----G~-i--~~~~~~l~ 269 (286)
.+. .+.|.+.|+||+++ ++.||+|+++++ |+ + ..+.+++.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlst-------i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIAS-------IKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhccCCCEEEEEechHHH-------HHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 764 34588999999999 588999999998 77 4 34556554
No 29
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-24 Score=188.89 Aligned_cols=180 Identities=19% Similarity=0.298 Sum_probs=143.8
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
...+.+.+|+|.|.. +|.++++.+++ |+.++++|++|+||||++++|.++|+ +++|. +||+|
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~-g~tvAiVg~SG~gKsTI~rllfRFyD------------~~sG~I~id~qd 326 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPL-GKTVAIVGESGAGKSTILRLLFRFYD------------VNSGSITIDGQD 326 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccC-ccEEEEEeCCCCcHHHHHHHHHHHhC------------CcCceEEEcchh
Confidence 356889999999986 79999999999 99999999999999999999999998 77776 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhh-eecccccC---ccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYA-LVYGDYKG---IPKKQIREY------------MAKGYDIVL--------RVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~-~~~~~~~~---~~~~~i~~~------------~~~g~~~v~--------~~~~q 192 (286)
+...+.+.++..+ +|+..+.+- .++...|+ .+.+++..+ ++.|+++.+ +|++|
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 9999988888876 666554432 22222232 223332222 455655444 68999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
|+++||+++++|++++| ||..+|..++..|+.- .+.|...|+||+++ +-.||.|||+++|.+.|.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst-------i~~adeiivl~~g~i~er 478 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST-------IIDADEIIVLDNGRIVER 478 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh-------ccCCceEEEeeCCEEEec
Confidence 99999999999999999 8999898998888763 44588899999999 789999999999988654
No 30
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=2e-24 Score=210.89 Aligned_cols=178 Identities=22% Similarity=0.263 Sum_probs=140.1
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
...++++||+|.|+. +|+++++.+++ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~-G~~vaIvG~SGsGKSTLlklL~gl~~------------p~~G~I~idg~~ 537 (708)
T TIGR01193 471 NGDIVINDVSYSYGYGSNILSDISLTIKM-NSKTTIVGMSGSGKSTLAKLLVGFFQ------------ARSGEILLNGFS 537 (708)
T ss_pred CCcEEEEEEEEEcCCCCcceeceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCcEEEECCEE
Confidence 346899999999973 79999999998 99999999999999999999999997 88887 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDIVL--------RVDI 191 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~v~--------~~~~ 191 (286)
+...+.+.++..+ .|+.++.+.++..|+ ...+.+++.++ ++.|+++.+ +||+
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 9888888888764 455443333332221 12344443333 344555544 5799
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||+++++|+++|| ||+.+++.+.+.|.+..+.|...++||++. ...||+|+++++|++.
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~-------~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV-------AKQSDKIIVLDHGKII 687 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHH-------HHcCCEEEEEECCEEE
Confidence 999999999999999999 888888888888887544578888999998 5789999999999764
No 31
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.89 E-value=1.9e-24 Score=206.78 Aligned_cols=177 Identities=24% Similarity=0.287 Sum_probs=138.9
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|++ .++++++.+++ |+.++|+|+||||||||+++|+|+++ |..|+ ++|.+
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~-G~~~aIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPA-GKTVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCceEEECCEE
Confidence 35899999999964 69999999998 99999999999999999999999997 77887 88998
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcE--------EEEeCH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDI--------VLRVDI 191 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~--------v~~~~~ 191 (286)
+...+.+.++..+ +|+.++.+.++..|+ ...+.+++.++ ++.|.++ +++||+
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 8888888777654 555443333222221 11334444333 4455555 456899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||+++++|+++|+ ||+.++..+.+.|.+. .+.|...|+||++. .+.||+|+++++|++.
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~-------~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST-------IEKADEILVVEDGEIV 557 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence 999999999999999999 8999899998888775 34588889999987 5789999999999763
No 32
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.9e-24 Score=193.38 Aligned_cols=177 Identities=21% Similarity=0.258 Sum_probs=138.2
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+..+|+++.|+. .+.++++.+++ |+.++|+|+|||||||++++|+|+++ |+.|+ ++|.+...
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~-g~~talvG~SGaGKSTLl~lL~G~~~------------~~~G~I~vng~~l~~ 387 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKA-GQLTALVGASGAGKSTLLNLLLGFLA------------PTQGEIRVNGIDLRD 387 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecC-CcEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCccccc
Confidence 345599999975 68999999998 99999999999999999999999986 77887 89999999
Q ss_pred eCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHHH-----------hcCCcE--------EEEeCHHHHHH
Q 043263 143 VSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREYM-----------AKGYDI--------VLRVDIQGART 196 (286)
Q Consensus 143 ~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~~-----------~~g~~~--------v~~~~~q~v~i 196 (286)
++.+.+++.+ .|..++...+...|+ ...+++++.+++ ++|.++ +++||.||+++
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaL 467 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLAL 467 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHH
Confidence 9999988865 455444333333332 124455555442 224444 44579999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
||+++.++++++| ||..+|+.+.+.|.+.. +.|...++||+.. ...+|+|+++++|++.+.
T Consensus 468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~-------~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED-------AADADRIVVLDNGRLVEQ 535 (559)
T ss_pred HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH-------HhcCCEEEEecCCceecc
Confidence 9999988888888 89988998888887653 3477888999999 589999999999987554
No 33
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.88 E-value=2.1e-24 Score=210.35 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=139.7
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|+|+. .|+++++.+++ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~-G~~iaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRP-GEKVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEE
Confidence 45899999999963 69999999998 99999999999999999999999997 78887 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEE--------EEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIV--------LRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v--------~~~~~q 192 (286)
+...+...++..+ .|+.++.+.++..|+. ..+.+++.++ ++.|.++. ++||+|
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 8888888887764 4554433333333321 1334443333 34455544 467999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
|+++||+++.+|+++|+ ||+.++..+.+.|.+. .+.|...|+||++. ...||+|+++++|++.+
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~-------~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL-------LDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HHhCCEEEEEeCCEEEe
Confidence 99999999999999999 8888888898888765 34588889999998 57899999999998743
No 34
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.88 E-value=3.5e-24 Score=208.80 Aligned_cols=178 Identities=21% Similarity=0.275 Sum_probs=135.3
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
...++++||+|.|+. +|+++++.+++ |++++|+|||||||||++++|.|+++ |.+|+ +||
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg 542 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHP-GEVVALVGPSGSGKSTVAALLQNLYQ------------PTGGQVLLDG 542 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEECC
Confidence 345899999999963 69999999998 99999999999999999999999997 78887 899
Q ss_pred cceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcE--------EEEeC
Q 043263 138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDI--------VLRVD 190 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~--------v~~~~ 190 (286)
.++...+...++..+ .|+.++.+..+..|+. ..+.+++.++ +++|.++ +++||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 998888887777654 4544433333333211 1234444333 3445544 44689
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+||+++||+++++|+++|+ ||+.+++.+.+ .....+.|...|+||++. ...||+|+++++|++.+
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~-------i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLST-------VERADQILVLKKGSVVE 693 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHH-------HHhCCEEEEEECCEEEE
Confidence 9999999999999999999 78777777766 333334588889999988 57899999999998743
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=1.3e-23 Score=173.99 Aligned_cols=172 Identities=22% Similarity=0.259 Sum_probs=121.7
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+++||++.|+. +|.++++.+.+ |++++|+||||||||||+++|.++.. |+.|. ++|.++
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~-Ge~vaI~GpSGSGKSTLLniig~ld~------------pt~G~v~i~g~d~ 69 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEA-GEFVAIVGPSGSGKSTLLNLLGGLDK------------PTSGEVLINGKDL 69 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEc
Confidence 35677777753 68999999998 99999999999999999999999876 77887 889888
Q ss_pred eeeCHHHHHHH--------hhccchhhhheecccc------cCccH----HHHHHHH---------h-cCCcEEEEeCHH
Q 043263 141 FFVSKEEFLQM--------VDKNELLEYALVYGDY------KGIPK----KQIREYM---------A-KGYDIVLRVDIQ 192 (286)
Q Consensus 141 ~~~~~~~~~~~--------i~~~~~~~~~~~~~~~------~~~~~----~~i~~~~---------~-~g~~~v~~~~~q 192 (286)
...+..+.... +++..++++..+..|. .+... +.+...+ . .....+++||.|
T Consensus 70 ~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ 149 (226)
T COG1136 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149 (226)
T ss_pred CcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence 77775543322 1334444444333332 12221 1112211 1 223467899999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|+++|||++.+|.+++. ||..+.+.+++-+.+.. +.+..+++|+...+ ..||++|.+.+|.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-------~~~dr~i~l~dG~ 219 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-------KYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-------HhCCEEEEEeCCe
Confidence 99999999966666666 66666777777666542 34778889988874 7999999999987
No 36
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=6.8e-24 Score=203.33 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=137.6
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. +++++++.+++ |++++|+|+||||||||+++|+|+++ |..|. ++|.++
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~-Ge~iaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg~~i 405 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPS-RGFVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDGRPL 405 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEh
Confidence 35899999999964 79999999998 99999999999999999999999997 77887 799998
Q ss_pred eeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcE--------EEEeCHHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDI--------VLRVDIQGA 194 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~--------v~~~~~q~v 194 (286)
...+.+.+++.+ +|+..+.+.++..|+. ..+.+++.++ +++|.++ +++||+||+
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 888888888765 4544433222222211 2334444333 3455555 446899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++||+++.+|+++|+ ||+.+++.+.+.|.+. ...|...++||++. ...||+|+++++|++.
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~-------l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST-------IVEADTILVLHRGQAV 553 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence 999999999999998 8888888888888765 34578888999987 5789999999998753
No 37
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.2e-23 Score=169.00 Aligned_cols=189 Identities=17% Similarity=0.185 Sum_probs=131.1
Q ss_pred HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.|+++||++.|++ +|.++++.+++ |++|+|+|+||||||||+++|.++.+ |..|+ ++|.++.
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~-GE~VaiIG~SGaGKSTLLR~lngl~d------------~t~G~i~~~g~~i~ 69 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQ-GEMVAIIGPSGAGKSTLLRSLNGLVD------------PTSGEILFNGVQIT 69 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCC-CcEEEEECCCCCcHHHHHHHHhcccC------------CCcceEEecccchh
Confidence 4678999999943 89999999998 99999999999999999999999887 77777 6777777
Q ss_pred eeCHHHHHHHh-------hccchhhhheeccc--------------ccC-ccHHHHHH---H---------HhcCCcEEE
Q 043263 142 FVSKEEFLQMV-------DKNELLEYALVYGD--------------YKG-IPKKQIRE---Y---------MAKGYDIVL 187 (286)
Q Consensus 142 ~~~~~~~~~~i-------~~~~~~~~~~~~~~--------------~~~-~~~~~i~~---~---------~~~g~~~v~ 187 (286)
.....+++... ++..++....++.| +.+ .++++-.. + .-...+.++
T Consensus 70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LS 149 (258)
T COG3638 70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLS 149 (258)
T ss_pred ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 66666555543 22232222222111 111 12222111 1 223346788
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+||.||++|||+++.+|.+++- |||.+.+.+++-|+ +..+.|...-.|.++.+ .++||+||-+.+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA------~~Y~~Riigl~~ 223 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA------KKYADRIIGLKA 223 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH------HHHHhhheEecC
Confidence 9999999999999987777766 89888887777655 34455666668999887 478888887777
Q ss_pred CCH------HHHHHHHHHHHHH
Q 043263 259 GKL------DSAVKLVESVIDA 274 (286)
Q Consensus 259 G~i------~~~~~~l~~~i~~ 274 (286)
|++ .++-++....++.
T Consensus 224 G~ivfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 224 GRIVFDGPASELTDEALDEIYG 245 (258)
T ss_pred CcEEEeCChhhhhHHHHHHHhc
Confidence 753 4454444444443
No 38
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.87 E-value=8.6e-23 Score=161.74 Aligned_cols=175 Identities=20% Similarity=0.237 Sum_probs=124.9
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
|.++||++.|+. +|.++++.+++ |+++.|+|||||||||++|+|.+... |+.|+ ++|.|+..
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~-Gef~fl~GpSGAGKSTllkLi~~~e~------------pt~G~i~~~~~dl~~ 68 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPK-GEFVFLTGPSGAGKSTLLKLIYGEER------------PTRGKILVNGHDLSR 68 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecC-ceEEEEECCCCCCHHHHHHHHHhhhc------------CCCceEEECCeeccc
Confidence 578999999986 79999999998 99999999999999999999998865 77887 77888766
Q ss_pred eCHHHHHHH-------hhccchhhhheecccc------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHH
Q 043263 143 VSKEEFLQM-------VDKNELLEYALVYGDY------KGIPKKQIREY-------------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 143 ~~~~~~~~~-------i~~~~~~~~~~~~~~~------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~i 196 (286)
+...++-.+ +++..++.+..++.|. .+....++++. ...-...+++|+.||++|
T Consensus 69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAI 148 (223)
T ss_pred ccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHH
Confidence 554443222 2444555555555552 24444444332 122236678999999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|||++..|.++|- ||++....+++-+.+ +.+.|..+.+|..+.. -..-.+++.+++|++
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv------~~~~~rvl~l~~Grl 215 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV------NRMRHRVLALEDGRL 215 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH------HhccCcEEEEeCCEE
Confidence 9999977777776 888766666665554 2344666678877653 245567777888865
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=6.4e-24 Score=220.14 Aligned_cols=178 Identities=14% Similarity=0.170 Sum_probs=141.5
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
...|+++||+|+|+. +|+++++.+++ |+.|||+|++||||||++++|.++++ |.+|+ +||.
T Consensus 1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~-GekvaIVG~SGSGKSTL~~lL~rl~~------------p~~G~I~IdG~ 1298 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSP-SEKVGVVGRTGAGKSSMLNALFRIVE------------LEKGRIMIDDC 1298 (1495)
T ss_pred CCcEEEEEEEEEECCCCCcccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCc------------CCCceEEECCE
Confidence 346999999999942 69999999998 99999999999999999999999997 78888 8999
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDIVL--------RVDIQ 192 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~v~--------~~~~q 192 (286)
|+..++.+.++..+ +|+.++.+.++..|+. ..+.+++.++ ++.|.++.+ +||+|
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 99988988888765 5665544444433321 2344554444 234555444 57999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++.+||+++++|+++|+ ||+.++..+.+.|++. .+.|...|+||+++ +..||+|+++++|++.
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t-------i~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT-------IIDCDKILVLSSGQVL 1448 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH-------HHhCCEEEEEECCEEE
Confidence 99999999999999998 8888888888888765 34588899999999 5789999999998763
No 40
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1.2e-23 Score=200.56 Aligned_cols=178 Identities=19% Similarity=0.266 Sum_probs=138.2
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|+. .|+++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKA-GEKVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEE
Confidence 45899999999953 69999999998 99999999999999999999999997 77887 88998
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHHH-----------hcCCcE--------EEEeCHHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREYM-----------AKGYDI--------VLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~~-----------~~g~~~--------v~~~~~q~ 193 (286)
+...+.+.++..+ .|+.++.+.....|+. ..+.+++.+++ ++|+++ +++||+||
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 8888888877654 4554443333333321 23444443331 334444 45689999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+++||+++.+|+++|+ ||+.+++.+.+.|.+. .+.|...++||++. ...||+|+++++|++.+
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~-------~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG-------LEQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhH-------HHhCCEEEEEeCCeEEE
Confidence 9999999999999999 8888888888888765 34477888999988 46799999999997643
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=99.87 E-value=9.1e-24 Score=219.44 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=142.4
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.+.|+++||+|+|.. +|+++++.+++ |+.|||+|++|||||||+++|.++++ |.+|+ +||.
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~-GekVaIVGrSGSGKSTLl~lL~rl~~------------p~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISP-SEKVGIVGRTGAGKSSMLNALFRIVE------------LERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCE
Confidence 356999999999953 69999999998 99999999999999999999999997 77887 8999
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDIVL--------RVDIQ 192 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~v~--------~~~~q 192 (286)
|+..++...++..+ +|+.++...++..|+. ..+.+++.++ ++.|.++.+ +||+|
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 99999999988765 6665544444433321 2344555444 234555444 57999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++++||+++++|+++|| ||..++..+.+.|++. .+.|...|+||+++ +..||+|+|+++|++.
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t-------I~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-------IIDCDRILVLDAGRVV 1451 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH-------HHhCCEEEEEECCEEE
Confidence 99999999999999999 8888888888888764 34588899999999 5789999999999764
No 42
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.87 E-value=7.5e-23 Score=163.50 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=123.2
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++.+++++|+. .+.++++.... |+++||+|+|||||||++++|+.++. |++|. ++|.|...
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~-Gei~GlLG~NGAGKTT~LRmiatlL~------------P~~G~v~idg~d~~~ 68 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEE-GEITGLLGENGAGKTTLLRMIATLLI------------PDSGKVTIDGVDTVR 68 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEecc-ceEEEEEcCCCCCchhHHHHHHHhcc------------CCCceEEEeeccccc
Confidence 456788999986 67888998887 99999999999999999999999987 77777 77776643
Q ss_pred eCHHHHHHHh----------hccchhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----------DKNELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iara 199 (286)
.+...+..+ ..-...+|..+++.+++....+++.. +.+...-++.|.+|++.+|||
T Consensus 69 -~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 69 -DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred -ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHH
Confidence 333333322 11233567778887777665543332 333344466788899999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVERKTENR--EELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++|.++|| ||..+...+.+-+.+..+... ..-+|.+... -..||+||++.+|.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev------ealCDrvivlh~Gev 211 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV------EALCDRVIVLHKGEV 211 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH------HHhhheEEEEecCcE
Confidence 9999999988 555555555555555433333 3336666653 258999999998854
No 43
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.87 E-value=1.4e-22 Score=181.59 Aligned_cols=204 Identities=19% Similarity=0.265 Sum_probs=149.4
Q ss_pred ChhhHHHHHhhccCCCCCccccccccccccccccchhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCC
Q 043263 29 KSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVG 104 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsG 104 (286)
.+...|+|....+...|....- -.-+..+..+.++++++.-++ ++.++++.+.+ |+.++|+||||||
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~--------m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~-G~~lgIIGPSgSG 374 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAER--------MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQA-GEALGIIGPSGSG 374 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCC--------CCCCCCCceeeEeeeeecCCCCCCcceecceeEecC-CceEEEECCCCcc
Confidence 3567788887777666543311 011123456777888775544 68999999998 9999999999999
Q ss_pred HHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hcc------chhhhheecccccCccHH
Q 043263 105 KDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 105 KSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~ 173 (286)
||||+|+|.|... |..|. +||-++...+++++.+.+ +|+ ++.+|...++.- .+.+
T Consensus 375 KSTLaR~lvG~w~------------p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~--~d~~ 440 (580)
T COG4618 375 KSTLARLLVGIWP------------PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE--ADPE 440 (580)
T ss_pred HHHHHHHHHcccc------------cCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc--CCHH
Confidence 9999999999987 66665 899999999999998876 332 334444444321 1222
Q ss_pred HHH------------HHHhcCCcEEE--------EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---H
Q 043263 174 QIR------------EYMAKGYDIVL--------RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---E 224 (286)
Q Consensus 174 ~i~------------~~~~~g~~~v~--------~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~ 224 (286)
.+- -.+++||++.+ +||+||+++||++|++|.++|+ ||...|..+.+.|. +
T Consensus 441 kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~ 520 (580)
T COG4618 441 KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520 (580)
T ss_pred HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH
Confidence 222 22677877665 5899999999999999988888 78877888877665 3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 225 r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
++. +...|+||.+. +..+|+|.++++|++..
T Consensus 521 rG~-~vvviaHRPs~-------L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 521 RGG-TVVVIAHRPSA-------LASVDKILVLQDGRIAA 551 (580)
T ss_pred cCC-EEEEEecCHHH-------HhhcceeeeecCChHHh
Confidence 443 78888999998 68999999999998754
No 44
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.87 E-value=2.5e-20 Score=153.03 Aligned_cols=179 Identities=23% Similarity=0.334 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
|++++|+||||||||||+++|++.+. .+......+++.+. ..+.++.+...+++..++..+.+.+.+.++++.||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS---AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc---hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 68999999999999999999998764 33333344444333 224566778888888888888887778899999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
+. .+.+.+..|..++++|..+.....+..++.+..+|+|+++ .+.+.+||..|++.+.+.+..|+..+. ....+
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~~~a 152 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRLENRGRENASEINARLARAA----RYQPQ 152 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHHhCCCCHHHHHHHHHHhh----hhccC
Confidence 98 5888999999989988876655555666566677888875 889999999887767777888886532 12358
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAEKAKV 279 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~ 279 (286)
|.+++++++++++++++|.+++..-+...
T Consensus 153 d~~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 153 DCHTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 87777888899999999999987665443
No 45
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.86 E-value=1.8e-23 Score=217.15 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=144.2
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.+.|+++||+++|+. +|+++++.+++ |+.|||+|++|||||||+++|.++++ |.+|+ +||.
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~-GekiaIVGrTGsGKSTL~~lL~rl~~------------~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHG-GEKVGIVGRTGAGKSSLTLGLFRINE------------SAEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcc------------CCCCeEEECCE
Confidence 356999999999963 69999999998 99999999999999999999999997 77887 8999
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcEEE--------EeCHH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDIVL--------RVDIQ 192 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~v~--------~~~~q 192 (286)
|+..++...++..+ +|+.++...++..|+. ..+.+++.+++ +.|.++.+ +||+|
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 99999999988865 6666655444444432 24555555442 34555544 47999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++.+||+++++|+++|+ ||..++..+.+.|++. .+.|...|+||+++ +..||+|+|+++|++.
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t-------i~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT-------IMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEEE
Confidence 99999999999999999 8888888888888764 44588899999999 5789999999999764
No 46
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=3.9e-23 Score=197.91 Aligned_cols=177 Identities=21% Similarity=0.308 Sum_probs=136.0
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|. ++|.++
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~------------p~~G~I~i~g~~i 399 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKP-GQTVAIVGPTGAGKSTLINLLQRVFD------------PQSGRILIDGTDI 399 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCEEh
Confidence 35899999999964 69999999998 99999999999999999999999997 77777 889988
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcE--------EEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDI--------VLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~--------v~~~~~q~ 193 (286)
...+.+.++..+ .|+..+.+.+...|+ ...+.+++..+ +++|.++ +++||+||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 888888877765 444332222222221 12233333322 3345444 45689999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+++||+++.+|+++|| ||+.+++.+.+.|.+. .+.|...++||.+. .+.||+|+++++|++.
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~-------~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLST-------VRNADRILVFDNGRVV 548 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHH-------HHhCCEEEEEECCEEE
Confidence 9999999999999999 8888888888888775 34578888999987 4789999999988653
No 47
>PTZ00243 ABC transporter; Provisional
Probab=99.86 E-value=3e-23 Score=215.20 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=140.0
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..|+++||+|+|+. +|+++++.+++ |+.|||+|++|||||||+++|.++++ |..|+ +||.|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~-GekVaIVGrTGSGKSTLl~lLlrl~~------------p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAP-REKVGIVGRTGSGKSTLLLTFMRMVE------------VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence 46999999999964 69999999998 99999999999999999999999997 77787 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcE--------EEEeCHHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDI--------VLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~--------v~~~~~q~ 193 (286)
+..++..+++..+ +|+.++.+.++..|+. ..+.+++.+++ +.|+++ +++||+|+
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence 9988988888765 6666654444444432 23455555442 334444 44589999
Q ss_pred HHHHHHHhCC-CcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 194 ARTLRRILGD-SAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 194 v~iaral~~~-~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+.+||+++++ ++++|+ ||+.++..+.+.|.+. .+.|...|+||+++ +..||+|+++++|++.|
T Consensus 1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~t-------i~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT-------VAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHH-------HHhCCEEEEEECCEEEE
Confidence 9999999975 677777 7777777887777764 44588899999999 57899999999997643
No 48
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=1e-22 Score=194.61 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=136.9
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|+|+. .++++++.+++ |++++|+|+||||||||+++|+|+++ |..|+ ++|.+
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~------------~~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEP-GETVALVGRSGSGKSTLVNLIPRFYE------------PDSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEECCEe
Confidence 45899999999964 68999999998 99999999999999999999999997 77787 78988
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcE--------EEEeCH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDI--------VLRVDI 191 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~--------v~~~~~ 191 (286)
+...+.+.++..+ +|+.++.+.....|+ ...+.+++.++ ++.|.++ +++||+
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 8777877777654 444443333333221 12334433332 3334443 557899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||+++.+|+++|+ ||+.+++.+.+.|.+. .+.+...++|+... ...||+|+++++|++.
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~-------~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST-------IEKADRIVVMDDGRIV 546 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH-------HHhCCEEEEEeCCEEE
Confidence 999999999999999999 8998899998888775 34588889999977 5789999999988754
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.5e-23 Score=168.88 Aligned_cols=178 Identities=17% Similarity=0.202 Sum_probs=117.6
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++|+++.|+. +++++++.+.+ |+++||+|+||||||||+++|+|+.. |..|+ ++|.+
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~-Ge~lgivGeSGsGKSTL~r~l~Gl~~------------p~~G~I~~~G~~ 70 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIER-GETLGIVGESGSGKSTLARLLAGLEK------------PSSGSILLDGKP 70 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecC-CCEEEEEcCCCCCHHHHHHHHhcccC------------CCCceEEECCcc
Confidence 566788888864 68899999998 99999999999999999999999987 55555 55544
Q ss_pred eeeeCHH-HHHH---Hhhccch--------hhhheeccc-ccCcc--HHHHHHH----------HhcCCcEEEEeCHHHH
Q 043263 140 YFFVSKE-EFLQ---MVDKNEL--------LEYALVYGD-YKGIP--KKQIREY----------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 140 ~~~~~~~-~~~~---~i~~~~~--------~~~~~~~~~-~~~~~--~~~i~~~----------~~~g~~~v~~~~~q~v 194 (286)
.....+. .+.. ++.|+.. +......+. ..+.. .+.+.++ +.+...-++|||+||+
T Consensus 71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI 150 (252)
T ss_pred cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH
Confidence 3322111 1111 1112111 000000000 01111 1112222 4445567889999999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
++|||+..+|.++|+ ||+.....++.-|. +..+.+...|+|+++.. ...||+|.|+++|.+.|.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v------~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV------EHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHH------HHHhhheeeeeCCeEEEe
Confidence 999999988888888 67665555655443 34455888899999886 478999999999987554
No 50
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.5e-23 Score=172.67 Aligned_cols=179 Identities=15% Similarity=0.228 Sum_probs=120.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc---
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD--- 139 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~--- 139 (286)
.|+++|+++.|+. +|+++++.+.+ |++++|+||||||||||+|.++|++. |..|+ ++|.+
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~-G~~~~iiGPNGaGKSTLlK~iLGll~------------p~~G~i~~~g~~~~~ 70 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEK-GEITALIGPNGAGKSTLLKAILGLLK------------PSSGEIKIFGKPVRK 70 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCc------------CCcceEEEccccccc
Confidence 3678999999995 89999999998 99999999999999999999999887 55555 33332
Q ss_pred ------eeeeCHHH-HHHHhhccchhhhheecc------ccc---CccHHHHHHHH---------hcCCcEEEEeCHHHH
Q 043263 140 ------YFFVSKEE-FLQMVDKNELLEYALVYG------DYK---GIPKKQIREYM---------AKGYDIVLRVDIQGA 194 (286)
Q Consensus 140 ------~~~~~~~~-~~~~i~~~~~~~~~~~~~------~~~---~~~~~~i~~~~---------~~g~~~v~~~~~q~v 194 (286)
+.++++.. +...+ +.-+.+....+ ++. ..+++.+.+++ .+....+++||.||+
T Consensus 71 ~~~~~~IgYVPQ~~~~d~~f--P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 71 RRKRLRIGYVPQKSSVDRSF--PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148 (254)
T ss_pred cccCCeEEEcCcccccCCCC--CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence 22222211 10000 00011111111 111 11234444443 333456889999999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-----CCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAE-----GKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-----G~i 261 (286)
.+|||++.+|+++++ +|+.++..+.+-|.+.. +.++.+++|++... ..++|+|+.++. |..
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v------~~~~D~vi~Ln~~~~~~G~~ 222 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV------MAYFDRVICLNRHLIASGPP 222 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh------HhhCCEEEEEcCeeEeccCh
Confidence 999999999998888 88887777766555432 55888889999986 588999998874 345
Q ss_pred HHHHH
Q 043263 262 DSAVK 266 (286)
Q Consensus 262 ~~~~~ 266 (286)
+++..
T Consensus 223 ~~~~~ 227 (254)
T COG1121 223 EEVLT 227 (254)
T ss_pred hhccC
Confidence 55544
No 51
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.85 E-value=7.1e-23 Score=194.62 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=134.0
Q ss_pred hHHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263 66 KIELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN 136 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~ 136 (286)
..++++||+|.|+. .|+++++.+++ |++++|+|||||||||++++|+|+++ |++|+ ++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~-G~~~aivG~sGsGKSTl~~ll~g~~~------------p~~G~i~~~ 402 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ-GDIVFIVGENGCGKSTLAKLFCGLYI------------PQEGEILLD 402 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEEC
Confidence 35889999999963 68999999998 99999999999999999999999987 77887 78
Q ss_pred CcceeeeCHHHHHHHh---hccchhhhheeccccc-CccHHHHHHH------------HhcCCc---EEEEeCHHHHHHH
Q 043263 137 GKDYFFVSKEEFLQMV---DKNELLEYALVYGDYK-GIPKKQIREY------------MAKGYD---IVLRVDIQGARTL 197 (286)
Q Consensus 137 g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~-~~~~~~i~~~------------~~~g~~---~v~~~~~q~v~ia 197 (286)
|.++...+...++..+ .++.++.+.....|.. ....+++.++ +++|++ .+++||+||+++|
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHH
Confidence 8888777777766543 4444444333333321 1233333333 234443 4667899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|+++.+|+++|+ ||+.+++.+.+.+.+ ..+.|...++||++. ...||+|+++++|++.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~-------~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY-------FELADQIIKLAAGCIV 549 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-------HHhCCEEEEEECCEEE
Confidence 999999999999 888888887776532 234588889999987 5789999999999763
No 52
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=1.9e-22 Score=191.05 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=131.2
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++||+|.|++ .++++++.+++ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPP-GERVALVGPSGAGKSTLLNLLLGFVD------------PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEeh
Confidence 5899999999964 69999999998 99999999999999999999999997 77887 789998
Q ss_pred eeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~q~ 193 (286)
...+.+.++..+ .|+.++.+.....|+. ..+.+++.++ +++|.+ .+.+|++||
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 888888777764 4444433333332211 1233333333 233443 355689999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
+++||+++++|+++|+ ||+.+++.+.+.+.+. .+.|...++||++. .+.||+|+++
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-------~~~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLAL-------AERADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHH-------HHhCCEEEeC
Confidence 9999999999999999 8988898898888875 34578888999988 4789999874
No 53
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.2e-22 Score=197.90 Aligned_cols=178 Identities=20% Similarity=0.305 Sum_probs=137.2
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
...++++||+|.|+. .++++++.+++ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~-G~~vaivG~sGsGKSTL~~ll~g~~~------------p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKP-GEFIGIVGPSGSGKSTLTKLLQRLYT------------PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCE
Confidence 346899999999953 69999999998 99999999999999999999999997 77887 8999
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~~~ 191 (286)
++...+.+.++..+ .|+..+.+.+...|+. ..+.+++.++ ++.|.++.+ +||+
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 98888888887754 4443322222222211 2333333332 344555544 5789
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||+++.+|+++|+ ||+.++..+.+.|.+. .+.|...++||++. ...||+|+++++|++.
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-------~~~~d~ii~l~~G~i~ 670 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST-------VRACDRIIVLEKGQIA 670 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH-------HHhCCEEEEEeCCEEE
Confidence 999999999999999999 8888888888888875 34577888999988 4679999999999764
No 54
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=1.6e-22 Score=159.15 Aligned_cols=176 Identities=18% Similarity=0.222 Sum_probs=124.9
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
+.+++|.+.|++.--..++.++. |++++|+|||||||||++++++|+.. |.+|+ ++|++.....+
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~-ge~vAi~GpSGaGKSTLLnLIAGF~~------------P~~G~i~i~g~d~t~~~P 68 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPA-GEIVAILGPSGAGKSTLLNLIAGFET------------PASGEILINGVDHTASPP 68 (231)
T ss_pred ccccceEEeeCcceEEEEEeecC-CcEEEEECCCCccHHHHHHHHHhccC------------CCCceEEEcCeecCcCCc
Confidence 45678889998755556677787 99999999999999999999999976 88888 78888765443
Q ss_pred HH--HHHHhhccchhhhheecccc-----cC-----ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 146 EE--FLQMVDKNELLEYALVYGDY-----KG-----IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 146 ~~--~~~~i~~~~~~~~~~~~~~~-----~~-----~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
.+ +..+++.+.++.+..+..|. .+ ...+.++.+ .++-...+++|++||+++||.+++..
T Consensus 69 ~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 69 AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 32 34444555555555554442 11 122333333 23334678899999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 205 AVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+++++ ||+.-+.....-+. ...+.|..+++|..+.+ .+.+|++++.++|++.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da------~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA------ARIADRVVFLDNGRIA 209 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HHhhhceEEEeCCEEE
Confidence 88777 66654444444333 22344888889988886 5889999999999873
No 55
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.6e-23 Score=164.37 Aligned_cols=182 Identities=22% Similarity=0.264 Sum_probs=124.6
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..++++||++.|+. +|+++++.+++ +++++|+|||||||||++++|.++.+.+..+ .-+|+ ++|++++
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~-~~VTAlIGPSGcGKST~LR~lNRmndl~~~~-------r~~G~v~~~g~ni~ 77 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPK-NKVTALIGPSGCGKSTLLRCLNRMNDLIPGA-------RVEGEVLLDGKNIY 77 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccC-CceEEEECCCCcCHHHHHHHHHhhcccCcCc-------eEEEEEEECCeecc
Confidence 35788999999997 89999999998 9999999999999999999999886533221 12354 6788776
Q ss_pred e--eCHHHHHHHh----hccc-h---hhhheecc-cccCcc-----------------HHHHHHHHhcCCcEEEEeCHHH
Q 043263 142 F--VSKEEFLQMV----DKNE-L---LEYALVYG-DYKGIP-----------------KKQIREYMAKGYDIVLRVDIQG 193 (286)
Q Consensus 142 ~--~~~~~~~~~i----~~~~-~---~~~~~~~~-~~~~~~-----------------~~~i~~~~~~g~~~v~~~~~q~ 193 (286)
. ++..+++..+ +... | +.++..++ .+.+.. ++++.+.+.+....++|||.||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 4 3455666543 3322 2 12222222 222222 2334444666666789999999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+-+||++.-.|.++++ |||-+...+.+.+.+.. ..|+..++|-+..+ .+.+|+...+..|.+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA------aRvSD~taFf~~G~L 226 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA------ARVSDYTAFFYLGEL 226 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH------HHHhHhhhhhcccEE
Confidence 9999999977777777 77777777766666543 34778889988776 355565555555544
No 56
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=7.2e-23 Score=194.41 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=133.1
Q ss_pred HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.++++||+|.|+. .++++++.+++ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.++.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~ 388 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKR-GELLFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKPVT 388 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEECC
Confidence 5889999999964 69999999998 99999999999999999999999997 77777 7888887
Q ss_pred eeCHHHHHHHh---hccchhhhheecccccCccHHHHHHHHh-----------cC---CcEEEEeCHHHHHHHHHHhCCC
Q 043263 142 FVSKEEFLQMV---DKNELLEYALVYGDYKGIPKKQIREYMA-----------KG---YDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~g---~~~v~~~~~q~v~iaral~~~~ 204 (286)
..+...++..+ .++.++.+.....+....+.+.+.+.++ .+ ...+++|++||+++||+++.+|
T Consensus 389 ~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 389 AEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred CCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 77777766653 4444444333333311223333333221 11 2357789999999999999999
Q ss_pred cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
+++|+ ||+.++..+.+.+.+. .+.|...++||++. ...||+|+++++|++.+.
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-------FIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-------HHhCCEEEEEECCEEEEe
Confidence 99999 7887777777776532 24577888999877 578999999999976443
No 57
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.3e-22 Score=170.41 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=120.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc---ce
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK---DY 140 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~---~~ 140 (286)
|.++++++.|+. .+.++++.+.. |+.++|+|||||||||++++|+|+.. |+.|. ++|+ |.
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~-Ge~vaLlGpSGaGKsTlLRiIAGLe~------------p~~G~I~~~~~~l~D~ 69 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKS-GELVALLGPSGAGKSTLLRIIAGLET------------PDAGRIRLNGRVLFDV 69 (345)
T ss_pred eeehhhhhhcccccccccceeeecC-CcEEEEECCCCCcHHHHHHHHhCcCC------------CCCceEEECCEeccch
Confidence 567889999987 78899999998 99999999999999999999999986 77777 5666 33
Q ss_pred eeeCHHH--HHHHhhccchhhhheecccc-cCc-------cHH----HHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 141 FFVSKEE--FLQMVDKNELLEYALVYGDY-KGI-------PKK----QIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 141 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~-------~~~----~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
..+...+ +...++...++.+.+++.|+ +|. +.. .+.+. .+....-+++||+||+++|
T Consensus 70 ~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 70 SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred hccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHH
Confidence 2211111 11122333444444444442 111 111 12222 1223355778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERL---VERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
|++...|+++++ ||+.-...+.+-| .++-+.+...++|+.+.+ .+.||+|+++++|+|++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea------~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA------LELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH------HhhcceEEEecCCeeeee
Confidence 999977777666 5554444444333 344455777789988887 589999999999987554
No 58
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=3.7e-20 Score=151.56 Aligned_cols=187 Identities=39% Similarity=0.622 Sum_probs=165.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
..-++|.||+|+||+|++++|...++. +++++.+++|.|+.|+++|.+|++.+..++..++..+.|++.+.++++.||.
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt 116 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT 116 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence 367999999999999999999987774 8999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC--
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK-- 248 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~-- 248 (286)
+.+.+++....|..++.+.+.|.+..+++. ....++|++.+++...+.+||.+|+..+...+..|+..+..+.....
T Consensus 117 si~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~ 195 (231)
T KOG0707|consen 117 SIAAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENS 195 (231)
T ss_pred hHHHHHHHHhcCCcceeehhhcCceeeecC-CCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCC
Confidence 998888888899999999999988888876 35678888889999999999999987788999999997666665554
Q ss_pred -CCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 249 -NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 249 -~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
.+|.++++. .++++++.++...+-.......
T Consensus 196 g~~d~~~~ns-~~lee~~kel~~~~~~~~~~~~ 227 (231)
T KOG0707|consen 196 GSFDLVIVNS-DRLEEAYKELEIFISSDDKESH 227 (231)
T ss_pred ccccceecCC-CchhhhhhhhhhhhhHHHHhhh
Confidence 499999886 6799999999988877665544
No 59
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=1.2e-22 Score=192.28 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=121.4
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. .|+++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.++
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~-G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~i~g~~i 399 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPP-GERVAILGPSGSGKSTLLMLLTGLLD------------PLQGEVTLDGVSV 399 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEh
Confidence 35899999999974 69999999998 99999999999999999999999997 77887 899998
Q ss_pred eeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEE--------EEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIV--------LRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v--------~~~~~q~ 193 (286)
... .++++..+ +|+.++.+.++..|+. ..+.+++.++ +++|+++. ++||+||
T Consensus 400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 887 77777764 5655544443433321 2344444433 34555554 4589999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRI 237 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl 237 (286)
+++||+++++|+++|| ||+.++..+.+.+.+. .+.|...|+||+
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999 8888888888888765 334677777763
No 60
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=2.4e-22 Score=190.79 Aligned_cols=177 Identities=19% Similarity=0.214 Sum_probs=131.3
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++|++|.|+. .++++++.+++ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQA-GEALAIIGPSGSGKSTLARLIVGIWP------------PTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEe
Confidence 35899999999953 69999999998 99999999999999999999999987 77777 78888
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~q 192 (286)
+...+...++..+ .++.++.......|+. ..+.+++.++ +++|.+ .+++||+|
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 7766766666543 3333322222222211 1233332221 333433 35578999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|+++||+++.+|+++|+ ||+.++..+.+.|.+. .+.+...++|+++. ...||+|+++++|++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~-------~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL-------LGCVDKILVLQDGRIA 532 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-------HHhCCEEEEEECCEEE
Confidence 99999999999999998 8888888888888764 24577888999986 4689999999999764
No 61
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=3.9e-22 Score=190.73 Aligned_cols=177 Identities=24% Similarity=0.308 Sum_probs=133.7
Q ss_pred hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
..++++||+|.|+. .++++++.+.+ |+.++|+|+||||||||+++|+|+++ |.+|+ ++|.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~-Ge~i~IvG~sGsGKSTLlklL~gl~~------------p~~G~I~i~g~ 402 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRP-GETVALVGPSGAGKSTLFQLLLRFYD------------PQSGRILLDGV 402 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEECCE
Confidence 45899999999963 68999999998 99999999999999999999999997 77887 7888
Q ss_pred ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCH
Q 043263 139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~ 191 (286)
++...+...++..+ +|+.++.+.....|+. ..+.+++.++ ++.|.+ .+++||+
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 88777777776654 4444433322222211 1223333222 233433 3456899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+.+||+++.+|+++|+ ||+.+++.+.+.+.+. .+.+...++|+++. ...||+|+++++|++.
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~-------~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT-------VLKADRIVVMDQGRIV 553 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence 999999999999999999 8888888888888764 34578888999977 4789999999999764
No 62
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=4.4e-22 Score=189.79 Aligned_cols=176 Identities=14% Similarity=0.235 Sum_probs=131.5
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++|++|.|+. .++++++.+++ |++++|+||||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~-G~~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKP-GQMLGICGPTGSGKSTLLSLIQRHFD------------VSEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEECCEE
Confidence 35889999999963 69999999998 99999999999999999999999987 77887 78888
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDI--------VLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~--------v~~~~~q 192 (286)
+...+...++..+ .++.++...+...|+ ...+.+++.++ ++.|.++ +++|++|
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 7767777666653 333332222222221 11233333332 2344444 4468999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++||+++.+|+++|+ ||+.+++.+.+.|.+. .+.|...++||++. ...||+|+++++|++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~-------~~~~d~i~~l~~G~i 527 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA-------LTEASEILVMQHGHI 527 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH-------HHcCCEEEEEeCCEE
Confidence 99999999999999999 8888888888888764 34577888999987 467999999998865
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=3.7e-22 Score=177.80 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=121.7
Q ss_pred HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+ .+|+++++.+.+ |++++|+|+||||||||+++|+++.. |+.|+ ++|.+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~-Gei~gIiG~sGaGKSTLlr~I~gl~~------------p~~G~I~i~G~~ 68 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLER------------PTSGSVIVDGQD 68 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence 45678888884 168999999998 99999999999999999999999986 77777 77887
Q ss_pred eeeeCHHHHHHH---h----hccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHHH
Q 043263 140 YFFVSKEEFLQM---V----DKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~~~~---i----~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q~ 193 (286)
+...+..+++.. + ++..++....+..+ ..+...+. +.+.+ ......+++|++||
T Consensus 69 i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQR 148 (343)
T TIGR02314 69 LTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQR 148 (343)
T ss_pred CCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 765554443221 1 11122111122221 11222211 22222 22334677899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+||+++.+|+++++ ||+.+...+.+.|.+. .+.+...++|+++.. .+.||+|+++++|++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v------~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV------KRICDCVAVISNGEL 219 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888888 7887777777766653 244778889998875 378999999998865
No 64
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.83 E-value=6.4e-22 Score=189.15 Aligned_cols=176 Identities=22% Similarity=0.307 Sum_probs=130.3
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. .++++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~ 399 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKA-GQTVAIVGPTGAGKTTLINLLQRVYD------------PTVGQILIDGIDI 399 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHccCCC------------CCCCEEEECCEEh
Confidence 35889999999964 69999999998 99999999999999999999999987 77777 788887
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~ 193 (286)
...+.+.++..+ .|+..+.+.....|+ ...+.+++.++ ++.|.+ .+++|++||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 777766666543 333332222222221 11223332221 223333 355689999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++||+++.+|+++|+ ||+.++..+.+.|.+. .+.|...++||++. ...||+|+++++|++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~-------~~~~d~i~~l~~G~i 547 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLST-------VRNADLVLFLDQGRL 547 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHH-------HHcCCEEEEEECCEE
Confidence 9999999999999999 8888888888888764 34477888999987 467999999998876
No 65
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.83 E-value=5.1e-22 Score=177.08 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=122.0
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |+++||+|||||||||++++|+|++. |..|+ ++|.++..
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~-Gei~gLlGpNGaGKSTLl~~L~Gl~~------------p~~G~i~i~G~~~~~ 107 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVAS-GECFGLLGPNGAGKSTIARMILGMTS------------PDAGKITVLGVPVPA 107 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCceEEEECCEECCc
Confidence 4899999999986 79999999998 99999999999999999999999987 66666 67765532
Q ss_pred eCHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iara 199 (286)
.. ...+..+ ++. ...++..+++..++.... .+.+.+ ......+++|++|++.+|++
T Consensus 108 ~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 108 RA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred ch-HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHH
Confidence 21 1222211 111 122322222323333221 122222 12223466789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|+++|+ ||+.+...+++.|.+. .+.+...++|.++.. ...||+|+++++|++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~------~~~~d~i~il~~G~i 250 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVLEAGRK 250 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 9999988888 8888788887777653 234677778988875 368999999988865
No 66
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.82 E-value=1.9e-18 Score=140.97 Aligned_cols=175 Identities=26% Similarity=0.348 Sum_probs=134.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc---ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS---LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
|++++|+|||||||||+++.|+..+.. ..+...+++|++. .+|.++.+.+.++|......+.|......+++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 568999999999999999999987642 3455566676544 4688898999999888777777777667777888
Q ss_pred CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263 169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
+.+. .+...+..|..+++++..+....++..+ ....+|||+++ .+.+.+||..|++.+...+..++..+.... ..
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~-~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~--~~ 152 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRY-PNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARSARFA--AA 152 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHC-CCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHHhhcc--cc
Confidence 8876 4777788888999999887666666665 34578889975 889999999987767777777776543222 14
Q ss_pred CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 249 NFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 249 ~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+|.++++++++++++.+++.+++.+
T Consensus 153 ~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 153 PADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 57888777778999999999988753
No 67
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=6.9e-22 Score=174.25 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=122.1
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |+++||+|||||||||++++|+|++. |+.|+ ++|.++..
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~-Gei~gllGpNGaGKSTLl~~l~Gl~~------------p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQR-GECFGLLGPNGAGKTTTLRMLLGLTH------------PDAGSISLCGEPVPS 73 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEeccc
Confidence 4788999999985 79999999998 99999999999999999999999986 66666 67776543
Q ss_pred eCHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iara 199 (286)
.. ...+..+ +.. ...++..+++..++.... .+.+++ ......+++|++|++.+|++
T Consensus 74 ~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 74 RA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred ch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 22 2222221 111 223333333333443322 122222 12223566789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|+++|+ ||+.+...+++.|.+. .+.+...++|.++.. ...||+|+++++|++
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~------~~~~d~i~il~~G~i 216 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVIEEGRK 216 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 9988888888 7887777777766653 234667778988875 367999999998864
No 68
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.82 E-value=6.8e-22 Score=204.94 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=138.5
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..|+++||+++|+. +|+++++.+++ |+.|||+|++|||||||+++|.++++ .+|+ +||.|
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~-GekvaIvGrSGsGKSTLl~lL~rl~~-------------~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEG-GQRVGLLGRTGSGKSTLLSALLRLLS-------------TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcC-------------CCcEEEECCEE
Confidence 46899999999963 79999999998 99999999999999999999999974 3455 89999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcE--------EEEeCHHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDI--------VLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~--------v~~~~~q~ 193 (286)
+..++...++..+ +|+.++...++..|+. ..+.+++.+++ +.|.++ +++||+|+
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence 9888888888754 6666554444444432 12444444442 234443 44589999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+.+||+++++++++|| ||..++..+.+.|++. .+.|...|+||+++ +..||+|+++++|++.
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~t-------i~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEA-------LLECQQFLVIEGSSVK 1430 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEEE
Confidence 9999999999999988 8888888888888875 34588899999998 5789999999999763
No 69
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=2.3e-21 Score=159.31 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=129.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+++++|+++||. ++.++++.+++ |++.|++|+|||||||+.++|.+++. |++|+ ++|.++...
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~-G~i~GllG~NGAGKTTtfRmILglle------------~~~G~I~~~g~~~~~~ 69 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPP-GEIFGLLGPNGAGKTTTFRMILGLLE------------PTEGEITWNGGPLSQE 69 (300)
T ss_pred eEEecchhccCceeeecceeeeecC-CeEEEeecCCCCCccchHHHHhccCC------------ccCceEEEcCcchhhh
Confidence 568899999997 89999999999 99999999999999999999999997 77776 677765443
Q ss_pred CHHHHHHH------hhccchhhhheecccccCccHHHHHHH----Hhc---------CCcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQM------VDKNELLEYALVYGDYKGIPKKQIREY----MAK---------GYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~------i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~---------g~~~v~~~~~q~v~iaral~~~~ 204 (286)
..+.+..+ .+..+..+...+++.+.+.+.++++.. +++ .-..++-|..|.+.++.++++.|
T Consensus 70 ~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 70 IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 33333222 233344556667777777776555443 221 11234457779999999999999
Q ss_pred cEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 205 AVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.++|+ |||.+.+.+.+.+.+.. +.|+..-+|++++. -..||++++++.|+
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v------EeLCD~llmL~kG~ 207 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV------EELCDRLLMLKKGQ 207 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH------HHHhhhhheecCCc
Confidence 99999 99999888887766533 22555558999986 37899999988874
No 70
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.7e-21 Score=170.38 Aligned_cols=174 Identities=23% Similarity=0.247 Sum_probs=125.7
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.++||++.|+ . +|+++++.+.+ |+++||+|||||||||++++|+|+.. |.+|+ ++|.+...
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~-Gei~gllG~NGAGKTTllk~l~gl~~------------p~~G~i~i~G~~~~~ 71 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEP-GEIFGLLGPNGAGKTTLLKILAGLLK------------PTSGEILVLGYDVVK 71 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEEcCEeCcc
Confidence 56789999999 4 89999999998 99999999999999999999999986 77777 77876543
Q ss_pred eCHHHHHHHh----hccch------hhhheecccccCcc----HHHHHHHHh---------cCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKNEL------LEYALVYGDYKGIP----KKQIREYMA---------KGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~~~---------~g~~~v~~~~~q~v~iara 199 (286)
. ...+...+ ++..+ .++..++...|+.. .+.+.+.++ .....++.|++||+.+|.+
T Consensus 72 ~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 72 E-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred C-HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHH
Confidence 2 23333322 22222 34445555556543 233444321 1124466789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVERKT---ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|+++|| ||+.+...+++.|++... .+....+|.++.. ...||+|+++++|.+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~------~~~~d~v~il~~G~~ 215 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA------EELCDRVIILNDGKI 215 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH------HHhCCEEEEEeCCEE
Confidence 9999988888 888778888877775432 3566668888875 356999999999965
No 71
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=99.82 E-value=1e-18 Score=157.21 Aligned_cols=195 Identities=28% Similarity=0.381 Sum_probs=161.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE 159 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~ 159 (286)
+..+....+.+...++|+|++|+|-.-+-+.|....+ .|...++||+|+++.++.+|.+|+|++.++|...+..+.|++
T Consensus 329 YEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE 408 (542)
T KOG0609|consen 329 YEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLE 408 (542)
T ss_pred HHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCcee
Confidence 4444444445578999999999999999999987765 788999999999999999999999999999999999999999
Q ss_pred hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc-------CCCHHH
Q 043263 160 YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK-------TENREE 232 (286)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~-------~~t~~~ 232 (286)
++.+.+++||++.+.++..+..|+.++++.+.|.+..+|..= ..+++||+.+|+.+.+.+.-..-. ..+.+.
T Consensus 409 ~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~E-f~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~ 487 (542)
T KOG0609|consen 409 YGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAE-FKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDED 487 (542)
T ss_pred cCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhc-ccceEEEecCCCchhHHHHhhhccccccccccCCHHH
Confidence 999999999999999999999999999999999999998763 779999999998776643222111 124555
Q ss_pred HHHHHHHHH-HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 233 LLVRIATAR-EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 233 i~~rl~~~~-~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
+.+.++... -+..+..++|.||+|++ +++++++|..+++++...
T Consensus 488 Lq~i~~eS~~ie~~yghyfD~iIvN~d--ld~t~~eL~~~iekl~te 532 (542)
T KOG0609|consen 488 LQEIIDESARIEQQYGHYFDLIIVNSD--LDKTFRELKTAIEKLRTE 532 (542)
T ss_pred HHHHHHHHHHHHHHhhhheeEEEEcCc--HHHHHHHHHHHHHHhccC
Confidence 544444322 24455689999999998 999999999999987644
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-21 Score=166.36 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=114.3
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~ 68 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRR-GEILAIIGPSGSGKSTLLRLIVGLLR------------PDSGEVLIDGEDISGLS 68 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccC
Confidence 45778888865 78999999998 99999999999999999999999986 55565 5565543322
Q ss_pred H---HHHHHHh---hcc-------chhhhheeccccc-CccHH----HHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263 145 K---EEFLQMV---DKN-------ELLEYALVYGDYK-GIPKK----QIREYM---------AKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 145 ~---~~~~~~i---~~~-------~~~~~~~~~~~~~-~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~ia 197 (286)
. ..++..+ .+. ...++..+....+ ....+ .+.+.+ ......+++|++|++.+|
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 69 EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 2 1122111 111 1112211110001 11111 122222 222245678899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~------~~~~d~v~~l~~G~i 215 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA------FAIADRIAVLYDGKI 215 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhcCEEEEEECCeE
Confidence 999988888887 7777777777766653 234677789988875 367999999998876
No 73
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=8.4e-22 Score=162.45 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=118.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+++++|+++||+ +++++++.+.+ |++++|+|||||||||+.++|.|+|. |+.|+ +.|+++..+
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~-Gei~~LIGPNGAGKTTlfNlitG~~~------------P~~G~v~~~G~~it~l 71 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRP-GEIVGLIGPNGAGKTTLFNLITGFYK------------PSSGTVIFRGRDITGL 71 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcC-CeEEEEECCCCCCceeeeeeeccccc------------CCCceEEECCcccCCC
Confidence 467899999998 89999999998 99999999999999999999999997 88887 788888877
Q ss_pred CHHHHHHH-----h------hccchhhhheeccccc-------Cc-----cHHHH----HHHHh---------cCCcEEE
Q 043263 144 SKEEFLQM-----V------DKNELLEYALVYGDYK-------GI-----PKKQI----REYMA---------KGYDIVL 187 (286)
Q Consensus 144 ~~~~~~~~-----i------~~~~~~~~~~~~~~~~-------~~-----~~~~i----~~~~~---------~g~~~v~ 187 (286)
++.+...+ + +.-..++|.......+ +. ..++. .++++ .-...+.
T Consensus 72 ~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls 151 (250)
T COG0411 72 PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLS 151 (250)
T ss_pred CHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC
Confidence 76654432 1 2222233322211100 00 11111 11111 1112344
Q ss_pred EeCHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 188 RVDIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
.|+..++.+||+++.+|.++++ |+|. ...+.+.|++ +.+.+...|.|+++.. ...||+|+|++
T Consensus 152 yG~qR~LEIArALa~~P~lLLL-DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V------m~l~dri~Vl~ 224 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLL-DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLN 224 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEe-cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH------hhhccEEEecc
Confidence 5777899999999977666655 4432 3345455544 3445777889999987 48999999999
Q ss_pred CCCH
Q 043263 258 EGKL 261 (286)
Q Consensus 258 ~G~i 261 (286)
.|++
T Consensus 225 ~G~~ 228 (250)
T COG0411 225 YGEV 228 (250)
T ss_pred CCcC
Confidence 8864
No 74
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=5.8e-21 Score=156.34 Aligned_cols=175 Identities=17% Similarity=0.165 Sum_probs=118.1
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||+..||. +|+++++.+.+ |++++|+|+||+||||+++.|+|+.+ +..|+ ++|+|+..
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~-Geiv~llG~NGaGKTTlLkti~Gl~~------------~~~G~I~~~G~dit~ 69 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVER-GEIVALLGRNGAGKTTLLKTIMGLVR------------PRSGRIIFDGEDITG 69 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeeEEECCeecCC
Confidence 3678899999997 89999999998 99999999999999999999999986 55666 67888877
Q ss_pred eCHHHHHHH----hhcc-------chhhhheecccccC-----cc-HHH-------HHHHHhcCCcEEEEeCHHHHHHHH
Q 043263 143 VSKEEFLQM----VDKN-------ELLEYALVYGDYKG-----IP-KKQ-------IREYMAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 143 ~~~~~~~~~----i~~~-------~~~~~~~~~~~~~~-----~~-~~~-------i~~~~~~g~~~v~~~~~q~v~iar 198 (286)
.+..+.... ++++ +..||...-..... .. .+. +.+........+++|+.|.++++|
T Consensus 70 ~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHH
Confidence 666554331 1222 22232221111100 00 122 233345556789999999999999
Q ss_pred HHhCCCcEEEEEecCCHH-------HHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVFLAAESEM-------ALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Illd~~~~~-------~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+ |.+++||.|++. .+.+.+. +..+.|+..+.+....+ .+.+|+.+|+++|++
T Consensus 150 ALm~~-PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A------l~iaDr~yvle~Gri 215 (237)
T COG0410 150 ALMSR-PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA------LEIADRGYVLENGRI 215 (237)
T ss_pred HHhcC-CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH------HHhhCEEEEEeCCEE
Confidence 99954 555667777643 3333333 33233555556655555 578999999999965
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-21 Score=163.19 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=125.8
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.+++++|.|+. .+.++++.+.+ |+.++|+|+|||||||++++|.|++. |..|+ ++|.++..
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~-Ge~~~i~G~nGsGKSTL~~~l~GLl~------------p~~G~v~~~g~~~~~ 70 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEK-GERVLLIGPNGSGKSTLLKLLNGLLK------------PTSGEVLVDGLDTSS 70 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCcCc------------CCCCEEEECCeeccc
Confidence 556788888864 78899999998 99999999999999999999999987 66676 56766542
Q ss_pred -eCHHHHHHHh----h--ccch----hhhheecc-cccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHH
Q 043263 143 -VSKEEFLQMV----D--KNEL----LEYALVYG-DYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 143 -~~~~~~~~~i----~--~~~~----~~~~~~~~-~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~ia 197 (286)
.+..+++..+ + +..+ +.....++ ...+.+.+++.+. .......+++||+||+++|
T Consensus 71 ~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence 2333333332 1 1112 11112222 2334555443332 2334467889999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
..+..+|.++|| ||+.....+.+.+.+.. +.|...++|+++.. ...||+++++++|++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~------~~~ad~v~vl~~G~i 217 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV------LEYADRVVVLDDGKI 217 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH------HhhCCEEEEEECCEE
Confidence 999989999988 88888888888877643 34788889999986 477999999999765
No 76
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.1e-18 Score=130.93 Aligned_cols=177 Identities=29% Similarity=0.394 Sum_probs=148.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
|.+|.++|||||||.||+......+. .+.+.-.++||+...| |++...++..+|...-.++.|...+..++..|
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y 81 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLSY 81 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence 89999999999999999999877654 4788888999988766 45566678999999888999988999999999
Q ss_pred CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263 169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
+++. +|..++..|..+++.+.+..+..+|..+. .-+++.+.+ +.+++.+||.+|++++.+.|..|+....... ..
T Consensus 82 gip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~-~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~--~~ 156 (192)
T COG3709 82 GIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYP-QLLVVCITA-SPEVLAQRLAERGRESREEILARLARAARYT--AG 156 (192)
T ss_pred cCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhh-cceeEEEec-CHHHHHHHHHHhccCCHHHHHHHHHhhcccc--cC
Confidence 9887 57899999999999999999999999884 333344555 4889999999999999999999998754332 24
Q ss_pred CCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 249 NFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
..|.+-++|+|.++.+.+++..++....
T Consensus 157 ~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 157 PGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred CCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 6788889999999999999999888654
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.1e-21 Score=176.06 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=118.8
Q ss_pred HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.| +. .|+++++.+.+ |++++|+||||||||||+++|+|+.. |..|+ ++|.++..
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~llG~sGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVAD-GEFIVLVGPSGCGKSTLLRMVAGLER------------ITSGEIWIGGRVVNE 70 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCEECCC
Confidence 5678899999 54 78999999998 99999999999999999999999986 66666 66766544
Q ss_pred eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
.+... +....++..+..+..+..|+ ++.... .+.++ +......+++|++||+++||+++
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 71 LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 33322 00011222222222222221 122221 12222 23344567789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++++ ||+.+.+.+.+.|.+ ..+.+...++|++..+ ...||+|+++++|++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~l~D~i~vl~~G~i 213 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA------MTLADRVVVMNGGVA 213 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence 88888887 777666766665543 2244777789988775 478999999998876
No 78
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.81 E-value=1.1e-18 Score=135.97 Aligned_cols=119 Identities=45% Similarity=0.787 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
+++|+||+||||||+++.|++.++ .+...+.++||+|+.|+.+|.++++++.+++...+.++.|+++..+.++.|+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 479999999999999999999865 5678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263 173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213 (286)
Q Consensus 173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~ 213 (286)
+.+.+.+.+|..++++++.+.+..++... ....+||+.++
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~-~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSY-PDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcC-CCeEEEEEECC
Confidence 99999999999999999999999998865 56678889987
No 79
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.81 E-value=1.1e-21 Score=175.78 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=119.9
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+.. |+.|+ ++|+++...
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~GpsGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~~~~~ 71 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKK-GEFVCLLGPSGCGKTTLLRIIAGLER------------QTAGTIYQGGRDITRL 71 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCC
Confidence 677899999986 68899999998 99999999999999999999999986 66666 677665433
Q ss_pred CHHHHHH--H-hhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 144 SKEEFLQ--M-VDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 144 ~~~~~~~--~-i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
.... +. + .++..++.+..+..|+ .+.+.. .+.++ +......+++|++||+++||+++
T Consensus 72 ~~~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 72 PPQK-RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred CHHH-CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 3221 11 1 1222222222222221 122221 22222 23344567789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++++ ||+.+...+.+.|.+. .+.+...++|+.+.+ ...||+|+++++|++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea------~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA------LSMADRIVVMNHGVI 213 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 88888887 7777677776655542 244777889988876 478999999999976
No 80
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=4.2e-21 Score=161.36 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=113.9
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITK-GEMVFLVGHSGAGKSTFLKLILGIEK------------PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEehh
Confidence 356788888842 68899999998 99999999999999999999999986 55665 5665543
Q ss_pred eeCHHH---HHHHh----hccchhhhheeccc------ccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263 142 FVSKEE---FLQMV----DKNELLEYALVYGD------YKGIP----KKQIREYM---------AKGYDIVLRVDIQGAR 195 (286)
Q Consensus 142 ~~~~~~---~~~~i----~~~~~~~~~~~~~~------~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~ 195 (286)
..+... ++..+ ++..+.....+..+ ..+.. .+.+.+++ ......+++|++||+.
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVA 148 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 222211 11111 11111111111111 01111 11222222 2233457788999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV------ETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCCcC
Confidence 99999988888888 7777777777766653 234667779988864 357999999988863
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=6.4e-21 Score=160.45 Aligned_cols=172 Identities=22% Similarity=0.245 Sum_probs=111.9
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~ 68 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEK-GEFVAIVGPSGSGKSTLLNILGGLDR------------PTSGEVRVDGTDI 68 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcC-CCEEEEEcCCCCCHHHHHHHHhCCcC------------CCceeEEECCEeh
Confidence 45677777753 68889999998 99999999999999999999999986 56665 566554
Q ss_pred eeeCHHHH----HHHh---hcc-------chhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHH
Q 043263 141 FFVSKEEF----LQMV---DKN-------ELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~----~~~i---~~~-------~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~ 193 (286)
...+.... +..+ .+. ...++..+....++.. .+.+.+++ ......+++|++|+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred hhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence 33222111 1111 111 1112111111111111 11222222 22334567889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+++++++|+
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-------~~~d~v~~l~~G~ 217 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-------EYADRIIELRDGK 217 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-------hhhcEEEEeeCCc
Confidence 9999999988888888 7777777777776653 234667778988763 4799999998885
No 82
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.4e-20 Score=150.14 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=123.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
|+++||++.|+. +++++++.+++ |.+.+|+||||+|||||+.+++++.+ .++|+ ++|.++...
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~-g~iTs~IGPNGAGKSTLLS~~sRL~~------------~d~G~i~i~g~~~~~~ 68 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPK-GGITSIIGPNGAGKSTLLSMMSRLLK------------KDSGEITIDGLELTST 68 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecC-CceeEEECCCCccHHHHHHHHHHhcc------------ccCceEEEeeeecccC
Confidence 568999999998 79999999998 99999999999999999999999986 77787 889888776
Q ss_pred CHHHHHHHh----hccch-----hhhheecccc---cC-c---cHHHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEEFLQMV----DKNEL-----LEYALVYGDY---KG-I---PKKQIREYM---------AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~~~~~i----~~~~~-----~~~~~~~~~~---~~-~---~~~~i~~~~---------~~g~~~v~~~~~q~v~iar 198 (286)
+.+++...+ +...+ ++....||.+ .| . ++..+.+++ .+-.+.++|||+||..+|-
T Consensus 69 ~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 69 PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhe
Confidence 666665543 22222 3333334432 12 1 223333332 2233568899999999998
Q ss_pred HHhCCCcEEEEEecCC-------HH---HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVFLAAES-------EM---ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Illd~~~-------~~---~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.++.+.+ +||||+|- -. .+.+|+...-+.|+..+.|+++.+ ..++|+|+-+.+|++
T Consensus 149 VlaQdTd-yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA------S~YsD~IVAlK~G~v 214 (252)
T COG4604 149 VLAQDTD-YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA------SCYSDHIVALKNGKV 214 (252)
T ss_pred eeeccCc-EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH------HhhhhheeeecCCEE
Confidence 8885555 55555542 11 333455554455888889999887 578999999988865
No 83
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=3.8e-21 Score=156.05 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=109.3
Q ss_pred HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEP-GESLAIIGPSGSGKSTLARLILGLLR------------PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEECCEEccc
Confidence 35667777753 68888888888 99999999999999999999999986 67776 67776654
Q ss_pred eCHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM 216 (286)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~ 216 (286)
.+...++..+ .++.... ..+.. .+.+.+ +.+|+.|++.+|++++.+|+++|+ ||+.+..
T Consensus 69 ~~~~~~~~~i---~~~~q~~---~~~~~---tv~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 69 WDPNELGDHV---GYLPQDD---ELFSG---SIAENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133 (173)
T ss_pred CCHHHHHhhe---EEECCCC---ccccC---cHHHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHH
Confidence 4443333221 1111000 01110 111111 788999999999999988888888 7777777
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 217 ALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 217 ~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+.+.|.+. .+.+...++|++.. ...||+++++++|++
T Consensus 134 ~l~~~l~~~~~~~~tii~~sh~~~~-------~~~~d~v~~l~~G~i 173 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRPET-------LASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHH-------HHhCCEEEEEECCCC
Confidence 777776653 23366677888765 356999999988863
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.7e-21 Score=174.31 Aligned_cols=176 Identities=20% Similarity=0.279 Sum_probs=120.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |+.|+ ++|.++..
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQ-GTMVTLLGPSGCGKTTVLRLVAGLEK------------PTEGQIFIDGEDVTH 72 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCEECCC
Confidence 4778899999975 68999999998 99999999999999999999999987 66666 66765543
Q ss_pred eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
.+... +....++..++.+..+..|+ ++.... .+.++ .......+++|+.||+++||+++
T Consensus 73 ~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 33221 00011222222222222221 122222 22222 22334567789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++++ ||+...+.+.+.|.+. .+.+...++|+.+.+ ...||+|+++++|++
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~------~~laD~i~vm~~G~i 215 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA------FAVSDTVIVMNKGKI 215 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 89888888 7777777776655542 244777889988876 478999999999976
No 85
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.3e-21 Score=163.94 Aligned_cols=174 Identities=17% Similarity=0.222 Sum_probs=114.1
Q ss_pred HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~ 68 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINP-GEFVALIGPSGAGKSTLLRCLNGLVE------------PTSGSVLIDGTDINKL 68 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCCceEEECCEecccc
Confidence 35677888863 68999999998 99999999999999999999999986 56665 566655433
Q ss_pred CH---HHHHHHh---hcc-chhhhheecccc--------------cCc----cHHHHHHH---------HhcCCcEEEEe
Q 043263 144 SK---EEFLQMV---DKN-ELLEYALVYGDY--------------KGI----PKKQIREY---------MAKGYDIVLRV 189 (286)
Q Consensus 144 ~~---~~~~~~i---~~~-~~~~~~~~~~~~--------------~~~----~~~~i~~~---------~~~g~~~v~~~ 189 (286)
+. ..++..+ .+. .+.....+..++ .+. ..+.+.+. .......+++|
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 148 (241)
T cd03256 69 KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG 148 (241)
T ss_pred CHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHH
Confidence 31 1222211 111 111111111110 000 11122222 22233457789
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~------~~~~d~v~~l~~G~ 222 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA------REYADRIVGLKDGR 222 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCE
Confidence 99999999999988888887 7777677777776653 234677789988875 35899999999887
Q ss_pred H
Q 043263 261 L 261 (286)
Q Consensus 261 i 261 (286)
+
T Consensus 223 i 223 (241)
T cd03256 223 I 223 (241)
T ss_pred E
Confidence 5
No 86
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.80 E-value=2.1e-21 Score=176.08 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=120.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |.+|+ ++|.++...
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~-Geiv~liGpNGaGKSTLLk~LaGll~------------p~sG~I~l~G~~i~~~ 70 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVRE-GSLVGLVGPNGAGKTTLLRAINGTLT------------PTAGTVLVAGDDVEAL 70 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCEEcCcC
Confidence 567899999986 79999999998 99999999999999999999999986 66776 677766554
Q ss_pred CHHHHHHHh----hccch------hhhheecc-----cccC---ccHHHHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263 144 SKEEFLQMV----DKNEL------LEYALVYG-----DYKG---IPKKQIREYM---------AKGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~~~~~~i----~~~~~------~~~~~~~~-----~~~~---~~~~~i~~~~---------~~g~~~v~~~~~q~v~i 196 (286)
+..+++..+ ++..+ .++..+.. .... ...+.+.+++ .+....+++|++||+.+
T Consensus 71 ~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 71 SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred CHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 544444322 11111 11111100 0100 1122233332 22334567889999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. .+.||+++++++|++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~------~~~adrii~l~~G~i 217 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLA------ARYCDELVLLADGRV 217 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 9999988888888 7776666666665543 234667779999886 478999999998865
No 87
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.2e-21 Score=171.75 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=117.0
Q ss_pred HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+ . +++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~-Gei~~iiG~nGsGKSTLlk~L~Gl~~------------p~~G~I~~~g~~ 68 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPA-GEIFGVIGASGAGKSTLIRCINLLER------------PTSGRVLVDGQD 68 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence 45678888886 2 68999999998 99999999999999999999999986 66666 66766
Q ss_pred eeeeCHHHH---HHHh----hccch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHH
Q 043263 140 YFFVSKEEF---LQMV----DKNEL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~---~~~i----~~~~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~ 193 (286)
+...+.... +..+ ++..+ .++..+....++.... .+.+.+ ......+++|++|+
T Consensus 69 i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qR 148 (343)
T PRK11153 69 LTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQR 148 (343)
T ss_pred CCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 544333322 1111 11111 2221111111122221 122222 22234567899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i------~~~~d~v~~l~~G~i 219 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV------KRICDRVAVIDAGRL 219 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888877 7777677777766653 234677779988875 367999999988865
No 88
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=1.6e-20 Score=157.21 Aligned_cols=172 Identities=23% Similarity=0.249 Sum_probs=111.7
Q ss_pred hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKK-GEFVLIVGPNGSGKSTLLRLLNGLLG------------PTSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEEcccC
Confidence 4567777753 58888998887 99999999999999999999999986 56665 566554332
Q ss_pred CHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHH
Q 043263 144 SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 144 ~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iara 199 (286)
+...++..+ .+. ...++.......++... +.+.+. +......+++|++|++.+|++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 222222211 111 11111111000111111 111222 233345577899999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+|+++++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCC
Confidence 9988888888 77777777777776532 34667778988764 35699999998774
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.80 E-value=1.6e-20 Score=157.54 Aligned_cols=174 Identities=13% Similarity=0.171 Sum_probs=113.3
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.|+ . ++.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~~~ 68 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRK-GEFLFLTGPSGAGKTTLLKLLYGALT------------PSRGQVRIAGEDVNR 68 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEccc
Confidence 35677888883 2 78999999998 99999999999999999999999986 55665 55655433
Q ss_pred eCHHH---HHHHh----hcc------chhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263 143 VSKEE---FLQMV----DKN------ELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGART 196 (286)
Q Consensus 143 ~~~~~---~~~~i----~~~------~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~i 196 (286)
.+... ++..+ ++. ...++........+.. .+.+.+.+ ......+++|++|++.+
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 69 LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred CCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 22211 11111 111 1112111110011111 11222222 22234567789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV------DRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEecCCC
Confidence 9999988888888 7777777777777653 234677779988874 35799999998874
No 90
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.80 E-value=5.1e-21 Score=168.52 Aligned_cols=174 Identities=19% Similarity=0.233 Sum_probs=119.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|++++|+. +++++++.+.+ |+++||+|||||||||++++|+|++. |..|+ ++|.++..
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~-Gei~~l~G~NGaGKTTLl~~l~Gl~~------------~~~G~i~i~g~~~~~- 68 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQK-GRIVGFLGPNGAGKSTTMKIITGYLP------------PDSGSVQVCGEDVLQ- 68 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-
Confidence 457788888875 79999999998 99999999999999999999999986 66666 66765532
Q ss_pred CHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263 144 SKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 144 ~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral 200 (286)
.....+..+ +...+ .++..+....++... +.+.+.+ .+....+++|++|++.+|+++
T Consensus 69 ~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 69 NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 222222221 11111 222222222233321 2222222 222345667899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+...+++.+.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~------~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV------EAICDRVIIINKGKI 210 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 999988888 88887788877776542 33566668988865 368999999988865
No 91
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.80 E-value=2.3e-21 Score=174.71 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=120.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~-Ge~~~LlGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINN-GEFLTLLGPSGCGKTTVLRLIAGFET------------PDSGRIMLDGQDITH 80 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence 4788999999986 68899999998 99999999999999999999999986 66666 66765543
Q ss_pred eCHHHH--HHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEEF--LQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~~--~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
...... ....++..++.+..+..|+ ++.... .+.++ +......+++|++||+++||+++
T Consensus 81 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 81 VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 332210 0011222222222222221 122221 22222 23333557789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
.+|+++++ ||+...+.+.+.|.+ ..+.+...++|+...+ ...||+|+++++|++.
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea------~~laDri~vl~~G~i~ 224 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA------LTMSDRIVVMRDGRIE 224 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence 88887777 666666666665554 2244777789988875 4789999999999763
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=8.6e-21 Score=159.10 Aligned_cols=172 Identities=21% Similarity=0.279 Sum_probs=110.7
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee--
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-- 142 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-- 142 (286)
+++|+++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~ 68 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEP-GEFLALLGPSGCGKTTLLRLIAGLER------------PDSGEILIDGRDVTGVP 68 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcCcCc
Confidence 45678888865 78999999998 99999999999999999999999986 44444 44443221
Q ss_pred --------eCHHHHHHHhhccchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 --------VSKEEFLQMVDKNELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 --------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~ 201 (286)
+.+.. .........++..+....++.. .+.+.+.+ ......+++|++|++.+|++++
T Consensus 69 ~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 69 PERRNIGMVFQDY--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred hhhccEEEEcCch--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 11100 0111111222211110111111 11122221 2223457789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~G~i 209 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA------LALADRIAVMNEGRI 209 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence 88888887 7777677777766653 234667778988764 367999999998875
No 93
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=1.2e-20 Score=194.60 Aligned_cols=173 Identities=13% Similarity=0.217 Sum_probs=126.8
Q ss_pred HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c-CCc
Q 043263 67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V-NGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~-~g~ 138 (286)
.++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|+++++ |.+|+ + +|.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i~~g~ 448 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTE-GKTYAFVGESGCGKSTILKLIERLYD------------PTEGDIIINDSH 448 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcC-CCEEEEECCCCCCHHHHHHHHHHhcc------------CCCCeEEEeCCc
Confidence 5899999999973 69999999998 99999999999999999999999997 77777 5 456
Q ss_pred ceeeeCHHHHHHHh---hccch------hhhheecccc------------------------------------------
Q 043263 139 DYFFVSKEEFLQMV---DKNEL------LEYALVYGDY------------------------------------------ 167 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~------------------------------------------ 167 (286)
++...+...++..+ .|... .++.. ++..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIK-YSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHH-hcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 66655655555533 33322 22221 1100
Q ss_pred --------------cCccHHHHHHH------------HhcCCc--------EEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263 168 --------------KGIPKKQIREY------------MAKGYD--------IVLRVDIQGARTLRRILGDSAVFVF---- 209 (286)
Q Consensus 168 --------------~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~v~iaral~~~~~~~Il---- 209 (286)
.....+.+.++ ++.|++ .+++|++||+++||+++.+|+++||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 00122223222 344444 3456899999999999999999999
Q ss_pred --EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 210 --LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 210 --ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
||+.++..+.+.|.+. .+.|...++||+++ +..||+|+++++|+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-------i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-------IRYANTIFVLSNRE 656 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-------HHhCCEEEEEeCCc
Confidence 8888888888877764 24588889999988 46899999998874
No 94
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.80 E-value=4.5e-21 Score=169.12 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=116.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++...
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~ 71 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIAR-GECFGLLGPNGAGKSTIARMLLGMIS------------PDRGKITVLGEPVPSR 71 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECccc
Confidence 678899999975 79999999998 99999999999999999999999986 55665 556544221
Q ss_pred CHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263 144 SKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 144 ~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral 200 (286)
....+..+ ++. ...++..++...++.... .+.+.+ ......+++|++|++.+|+++
T Consensus 72 -~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 72 -ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL 150 (303)
T ss_pred -HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 11112111 111 112222211112222211 122221 222345667899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~------~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVLESGRK 213 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 988888888 7777777777766553 234677779988875 367999999988864
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=1.2e-20 Score=161.43 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=114.9
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.++||++.|+ . +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~ 68 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINP-GEFVAIIGPSGAGKSTLLRCINRLVE------------PSSGSILLEGTDITK 68 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCccEEEECCEEhhh
Confidence 35678888887 4 78999999998 99999999999999999999999986 66666 56665433
Q ss_pred eCHHH---HHHHh----hccchhhhheecccc--------------cC----ccHHHHHHH---------HhcCCcEEEE
Q 043263 143 VSKEE---FLQMV----DKNELLEYALVYGDY--------------KG----IPKKQIREY---------MAKGYDIVLR 188 (286)
Q Consensus 143 ~~~~~---~~~~i----~~~~~~~~~~~~~~~--------------~~----~~~~~i~~~---------~~~g~~~v~~ 188 (286)
.+... ++..+ +...+.....+..++ .. ...+.+.+. +......+++
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 148 (243)
T TIGR02315 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSG 148 (243)
T ss_pred CCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCH
Confidence 22211 12211 111111111111110 00 001122222 2223345778
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~------~~~~d~v~~l~~G 222 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA------KKYADRIVGLKAG 222 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEECC
Confidence 999999999999988888877 7776677776666543 234667779988874 3679999999988
Q ss_pred CHH
Q 043263 260 KLD 262 (286)
Q Consensus 260 ~i~ 262 (286)
++.
T Consensus 223 ~i~ 225 (243)
T TIGR02315 223 EIV 225 (243)
T ss_pred EEE
Confidence 753
No 96
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-20 Score=161.17 Aligned_cols=175 Identities=18% Similarity=0.164 Sum_probs=114.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~ 70 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEG-GAIYTIVGPSGAGKSTLIKLINRLID------------PTEGSILIDGVDIKTI 70 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEhhhc
Confidence 567788888865 78999999998 99999999999999999999999986 55565 556544322
Q ss_pred CHHHHHHHh---hcc------chhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
+...++..+ .+. ...++..+.....+.....+.+. .......+++|++|++.+|++++.+|
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 71 DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred ChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 222222211 111 11222111000111111112221 22334457789999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~------~~~~d~i~~l~~G~i 210 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA------KRIGDYTAFLNKGIL 210 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH------HHhCCEEEEEeCCEE
Confidence 88777 7776677776666543 234777779988874 367999999998865
No 97
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=8.8e-21 Score=158.13 Aligned_cols=170 Identities=18% Similarity=0.132 Sum_probs=109.9
Q ss_pred hHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 70 LRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 70 ~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
++|+++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~-- 66 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYA-GEIIALTGKNGAGKTTLAKILAGLIK------------ESSGSILLNGKPIKA-- 66 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEhhh--
Confidence 4677777753 68889999988 99999999999999999999999986 55665 45544311
Q ss_pred HHHHHHH---hhc--------cchhhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 145 KEEFLQM---VDK--------NELLEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 145 ~~~~~~~---i~~--------~~~~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
...+.. +.+ ....++..+....+....+.+.+++ ......+++|++|++.+|++++.+|
T Consensus 67 -~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 67 -KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred -HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 111110 011 1122222111111111112233332 2223456788999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i 204 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL------AKVCDRVLLLANGAI 204 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 87777 7777677777776653 233667778988774 357999999988864
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.6e-21 Score=165.40 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=116.9
Q ss_pred HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+.++||++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i 71 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQ-GEWLSIIGHNGSGKSTTVRLIDGLLE------------AESGQIIIDGDLL 71 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEC
Confidence 567888888852 78999999998 99999999999999999999999986 66666 667665
Q ss_pred eeeCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
...+...++..+ .+. ...++..+.....+...+ .+.++ .......+++|++|++.+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~l 151 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 433333332221 111 112222111011122221 12222 233335667789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.|...++|++... ..||+|+++++|++
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-------~~~dri~~l~~G~i 218 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-------ALSDRVLVMKNGQV 218 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-------HhCCEEEEEECCEE
Confidence 9999988888888 7777677776666543 244777889988773 46999999988864
No 99
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-20 Score=159.38 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=112.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++...
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~- 67 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRR-GEIFGLLGPNGAGKTTTIKMLTTLLK------------PTSGRATVAGHDVVRE- 67 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEecCcC-
Confidence 45678888865 78899999998 99999999999999999999999986 55555 445443211
Q ss_pred HHHHHHHh----hccch------hhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
....+..+ ++..+ .++.......++... +.+.+. .......+++|++|++.+|++++
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 68 PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 11111111 11111 111111001111111 112222 22233457789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~------~~~~d~i~~l~~G~i 210 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA------EQLCDRVAIIDHGRI 210 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence 88888888 7777777777766653 134667778988874 367999999999976
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=6.9e-21 Score=159.10 Aligned_cols=172 Identities=22% Similarity=0.197 Sum_probs=113.0
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.++...
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~- 67 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKK-GEIYGFLGPNGAGKTTTMKIILGLIK------------PDSGEITFDGKSYQKN- 67 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCCcccch-
Confidence 45678888864 78999999998 99999999999999999999999986 55565 556544221
Q ss_pred HHHHHHHh----hccch------hhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
..+...+ +...+ .++.......++...+.+.+. .......+++|++|++.+|++++.+|+
T Consensus 68 -~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 68 -IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred -HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111111 11111 121111111111122222222 222334577899999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~v~~l~~g~i 204 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI------QKVADRIGIINKGKL 204 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HHhcCEEEEEECCEE
Confidence 8777 7777777777766643 234667778988874 367999999998875
No 101
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.79 E-value=3e-21 Score=173.33 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=118.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC--CC--cCCccee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP--GE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~--G~--~~g~~~~ 141 (286)
++++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |.. |+ ++|.++.
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEA-GELLALIGKSGCGKTTLLRAIAGFVK------------AAGLTGRIAIADRDLT 72 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCCEEEEECCEECC
Confidence 677899999986 78999999998 99999999999999999999999986 555 65 5666543
Q ss_pred eeCHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263 142 FVSKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 142 ~~~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral 200 (286)
...... +....++..+..+..+..| .++.... .+.++ +......+++|++||+++||++
T Consensus 73 ~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 73 HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred CCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 322211 0001122222222222222 1122221 22222 2333455778899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHH---hc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVE---RK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~---r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++++ ||+.....+.+.|.+ .. +.+...++|+++.+ ...||+|+++++|++
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea------~~l~dri~vl~~G~i 217 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA------LTLADKAGIMKDGRL 217 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 988888888 777777777665553 22 34677789988875 478999999998865
No 102
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.79 E-value=1.8e-20 Score=159.25 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=113.8
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~ 68 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQ-GEIVGLLGPNGAGKTTTFYMIVGLVK------------PDSGKILLDGQDITKLP 68 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEecccCC
Confidence 45778888875 78999999998 99999999999999999999999986 55665 5565443222
Q ss_pred HHHHH-HH---h-hccc------hhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263 145 KEEFL-QM---V-DKNE------LLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 145 ~~~~~-~~---i-~~~~------~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral 200 (286)
..... .. + +... ..++.......++... +.+.+. .......+++|++|++.+|+++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred HhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 22211 10 1 1111 1111111101111111 112222 2223345678899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i 211 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET------LSITDRAYIIYEGKV 211 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence 988888888 7777777777766543 233666778988764 478999999999876
No 103
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-20 Score=158.43 Aligned_cols=172 Identities=20% Similarity=0.269 Sum_probs=113.3
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ | +++|+||||||||||+++|+|+++ |.+|+ ++|.++...+
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~-g-~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~ 67 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGP-G-MYGLLGPNGAGKTTLMRILATLTP------------PSSGTIRIDGQDVLKQP 67 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcC-C-cEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCCccccch
Confidence 45678888865 78999999998 9 999999999999999999999986 56666 5666543322
Q ss_pred HHHHHHHh----hccch------hhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 145 KEEFLQMV----DKNEL------LEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
..++..+ ++..+ .++..+.....+.. .+.+.++ +......+++|++|++.+|++++
T Consensus 68 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 68 -QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred -HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh
Confidence 2222211 11111 11111110011111 1112222 22233457788999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~g~i 207 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV------ESLCNQVAVLNKGKL 207 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 88888888 77777777777776532 34666778988874 357999999998875
No 104
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.8e-21 Score=165.23 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=117.0
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++..
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 71 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPE-GSKTALLGPNGAGKSTLLLHLNGIYL------------PQRGRVKVMGREVNA 71 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEECCEECCC
Confidence 56788888885 2 79999999998 99999999999999999999999986 56665 56655432
Q ss_pred eCHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263 143 VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 143 ~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iar 198 (286)
.+....+..+ .+. .+.++..+.....+... +.+.+++ ......+++|++|++.+|+
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAG 151 (274)
T ss_pred CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHH
Confidence 2222222211 111 11222211100011111 1222222 2233456678999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. .+.||+|+++++|++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~------~~~~d~i~~l~~G~i 216 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA------AEWADQVIVLKEGRV 216 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99988888888 77777777777665432 44777889998874 368999999988875
No 105
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.3e-21 Score=155.46 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=108.6
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~ 68 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEA-GEIVALLGPSGSGKSTLLRCIAGLEE------------PDSGSILIDGEDLTDLE 68 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence 35677777764 68899999998 99999999999999999999999986 66776 6676554332
Q ss_pred --HHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263 145 --KEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM 216 (286)
Q Consensus 145 --~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~ 216 (286)
...+...+ .++..... .....+ +.+.+. ..+++|++|++.++++++.+|+++|+ ||+.+..
T Consensus 69 ~~~~~~~~~i---~~~~q~~~--~~~~~t---~~~~l~---~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~ 137 (178)
T cd03229 69 DELPPLRRRI---GMVFQDFA--LFPHLT---VLENIA---LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137 (178)
T ss_pred hhHHHHhhcE---EEEecCCc--cCCCCC---HHHhee---ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 12222211 11110000 000111 111111 01778999999999999989988888 7777777
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 217 ALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 217 ~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.+.+.|.+.. +.+...++|+.... ...||+++++++|+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDLDEA------ARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEeCCC
Confidence 7777766532 34666778887764 25799999998763
No 106
>PRK10908 cell division protein FtsE; Provisional
Probab=99.79 E-value=9.9e-21 Score=159.75 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=114.9
Q ss_pred HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.| +. .++++++.+.+ |++++|+||||||||||+++|+|+++ |.+|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~ 68 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRP-GEMAFLTGHSGAGKSTLLKLICGIER------------PSAGKIWFSGHDITR 68 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc
Confidence 3467788888 43 78999999998 99999999999999999999999986 55665 55655543
Q ss_pred eCHHH---HHHHh----hccch------hhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 143 VSKEE---FLQMV----DKNEL------LEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 143 ~~~~~---~~~~i----~~~~~------~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
.+... ++..+ +...+ .++..+....++...+ .+.++ +......+++|++|++.+
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 69 LKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred CChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHH
Confidence 32221 11111 11111 1211111001111111 12222 223334567789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
|++++.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++.. ...||+|+++++|++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI------SRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEcc
Confidence 9999988888887 7776667777766643 234667778988874 36799999999887643
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=1.5e-20 Score=157.58 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=112.2
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee--
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-- 142 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-- 142 (286)
+++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~ 68 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKK-GEVVVIIGPSGSGKSTLLRCINLLEE------------PDSGTIIIDGLKLTDDK 68 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCccc
Confidence 45678888875 78999999998 99999999999999999999999986 55665 55654421
Q ss_pred eCHHHHHHHh----hcc------chhhhheeccc-ccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKN------ELLEYALVYGD-YKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 143 ~~~~~~~~~i----~~~------~~~~~~~~~~~-~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iar 198 (286)
.....++..+ ++. ...++...... .++... +.+.+. +......+++|+.|++.+++
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 148 (213)
T cd03262 69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIAR 148 (213)
T ss_pred hhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHH
Confidence 1111111111 111 11222111100 111111 112222 23333457788999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~------~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFA------REVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCcC
Confidence 99988888877 7776677777766653 234666778988774 367999999988763
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.79 E-value=9.5e-21 Score=161.32 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=113.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.++...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~i~~~ 68 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRP-GEFVALLGPNGAGKSTLFSLLTRLYV------------AQEGQISVAGHDLRRA 68 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEcccC
Confidence 346778888864 68999999998 99999999999999999999999986 55555 455544322
Q ss_pred CHHHHHH--Hhhcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263 144 SKEEFLQ--MVDKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 144 ~~~~~~~--~i~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~ 201 (286)
+...... .+.+. ...++.......++... +.+.+.+ ......+++|++|++.+|++++
T Consensus 69 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 69 PRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL 148 (236)
T ss_pred ChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 2211111 01111 11222111111111111 1122222 2233456678999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+++++++|++
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-------~~~d~i~~l~~G~i 210 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI-------EADDRLVVLHRGRV 210 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH-------hhCCEEEEEeCCeE
Confidence 99988888 8888777777776653 234667778988773 45999999988875
No 109
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.79 E-value=1.7e-20 Score=168.13 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=113.5
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHH----HHHh-
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEF----LQMV- 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~----~~~i- 152 (286)
.++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+ +..+
T Consensus 8 ~l~~vs~~i~~-Gei~~l~G~sGsGKSTLLr~L~Gl~~------------p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~ 74 (363)
T TIGR01186 8 GVNDADLAIAK-GEIFVIMGLSGSGKSTTVRMLNRLIE------------PTAGQIFIDGENIMKQSPVELREVRRKKIG 74 (363)
T ss_pred eEEeeEEEEcC-CCEEEEECCCCChHHHHHHHHhCCCC------------CCceEEEECCEECCcCCHHHHHHHHhCcEE
Confidence 57788888887 99999999999999999999999987 77776 78887766665554 2111
Q ss_pred ---hccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 153 ---DKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 153 ---~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
++..++.+..+..| ..+...+ .+.++ +......+++|++||+.+||+++.+|+++++
T Consensus 75 ~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 75 MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred EEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22222222222222 1222221 12222 2333445678899999999999988888888
Q ss_pred -----EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -----LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.+.+ ..+.|...++|+++.+ .+.||+|+++++|++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea------~~~~drI~vl~~G~i 208 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA------IRIGDRIVIMKAGEI 208 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence 777777777766653 2245778889999876 478999999998875
No 110
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.79 E-value=9.5e-21 Score=160.37 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=114.6
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-----CcceeeeeecccCCCCCC--cCCcc
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR-----DSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-----~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++ + |.+|+ ++|.+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~------------~~~G~i~~~g~~ 68 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPK-GEITALIGPSGCGKSTLLRLLNRLNDLIPGA------------PDEGEVLLDGKD 68 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccccCC------------CCCeEEEECCEE
Confidence 45778888875 78999999998 9999999999999999999999997 5 55565 56655
Q ss_pred eeeeC--HHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHHH---------hcC--CcEEEEeCHH
Q 043263 140 YFFVS--KEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREYM---------AKG--YDIVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~--~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~~---------~~g--~~~v~~~~~q 192 (286)
+...+ ...++..+ .+. ...++.......++. . .+.+.+.+ ... ...+++|++|
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence 43222 11222211 111 112221111111111 1 11222221 222 2567788999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+... .+...++|+++.. ...||+++++++|++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i 218 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQA------ARVADRTAFLLNGRL 218 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHH------HHhCCEEEEEeCCEE
Confidence 99999999988888888 777777777777765432 3556678988864 368999999999876
No 111
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.79 E-value=3.4e-21 Score=172.66 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=116.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|+++...
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~i~~~ 69 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPS-GQMVALLGPSGSGKTTLLRIIAGLEH------------QTSGHIRFHGTDVSRL 69 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence 456788888875 68999999998 99999999999999999999999986 66666 566655332
Q ss_pred CHHH--HHHHhhccch------hhhheecccc----cCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEE--FLQMVDKNEL------LEYALVYGDY----KGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~--~~~~i~~~~~------~~~~~~~~~~----~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iar 198 (286)
.... +....++..+ .++..+.... .+...+ .+.+.+ ......+++|+.||+++||
T Consensus 70 ~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 70 HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 2211 0001111112 2222111111 111211 222222 2233456788999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++++ ||+.+.+.+.+.|.+. .+.+...++|++..+ ...||+|+++++|++
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea------~~~~Dri~vl~~G~i 215 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA------MEVADRVVVMSQGNI 215 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99988888887 7777676666665542 234777789998876 478999999998875
No 112
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.79 E-value=1.2e-20 Score=158.70 Aligned_cols=173 Identities=20% Similarity=0.186 Sum_probs=113.2
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.++
T Consensus 3 ~~~~v~~~~~~~~~~~~il~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~ 69 (218)
T cd03266 3 TADALTKRFRDVKKTVQAVDGVSFTVKP-GEVTGLLGPNGAGKTTTLRMLAGLLE------------PDAGFATVDGFDV 69 (218)
T ss_pred EEEEEEEecCCCCccceeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCCceEEECCEEc
Confidence 45677777752 68888999988 99999999999999999999999986 56665 566554
Q ss_pred eeeCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 141 FFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 141 ~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
.. ....++..+ ++..+ .++..+....++... +.+.++ +.+....+++|++|++.+|
T Consensus 70 ~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 70 VK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred cc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHH
Confidence 32 122222211 11111 121111111111111 112222 2223345677899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~i~~l~~G~i 214 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV------ERLCDRVVVLHRGRV 214 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence 999988888887 7777777777777653 234777789988764 367999999998875
No 113
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.5e-20 Score=166.56 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=119.0
Q ss_pred hHHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263 66 KIELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN 136 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~ 136 (286)
..++++|+++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~L~Gl~~------------p~~G~I~i~ 86 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEK-NKIYFIIGNSGSGKSTLVTHFNGLIK------------SKYGTIQVG 86 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEEC
Confidence 34789999999962 69999999998 99999999999999999999999987 66665 56
Q ss_pred Ccceeee----------------CHHHHHHHh---hcc---ch-----hhhheeccc-ccCccHHH----HHHH------
Q 043263 137 GKDYFFV----------------SKEEFLQMV---DKN---EL-----LEYALVYGD-YKGIPKKQ----IREY------ 178 (286)
Q Consensus 137 g~~~~~~----------------~~~~~~~~i---~~~---~~-----~~~~~~~~~-~~~~~~~~----i~~~------ 178 (286)
|.++... ....++..+ .+. .+ .++. .++. ..+...+. +.+.
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 87 DIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI-MFGPVALGVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred CEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHH-HhhHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 6544211 112222221 121 11 1211 1111 11122211 1111
Q ss_pred ----HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhc
Q 043263 179 ----MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQH 246 (286)
Q Consensus 179 ----~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~ 246 (286)
.......+++|++|++++||+++.+|+++|+ ||+.+...+.+.|.+. .+.|...++|+++..
T Consensus 166 ~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~------ 239 (320)
T PRK13631 166 DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV------ 239 (320)
T ss_pred ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------
Confidence 1223345778899999999999988888888 7777777777766542 244777889999874
Q ss_pred cCCCcEEEECCCCCH
Q 043263 247 VKNFDYVVVNAEGKL 261 (286)
Q Consensus 247 ~~~~d~viv~~~G~i 261 (286)
...||+|+++++|++
T Consensus 240 ~~~adri~vl~~G~i 254 (320)
T PRK13631 240 LEVADEVIVMDKGKI 254 (320)
T ss_pred HHhCCEEEEEECCEE
Confidence 368999999998864
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.79 E-value=2.4e-20 Score=157.21 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=113.9
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~ 68 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGK-GEIVAIVGSSGSGKSTLLHLLGGLDN------------PTSGEVLFNGQS 68 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence 346778888852 68899999998 99999999999999999999999986 66666 56665
Q ss_pred eeeeCHHHH---H-HHh---hcc-chhhhheecccc------cCcc----HHHHHHH---------HhcCCcEEEEeCHH
Q 043263 140 YFFVSKEEF---L-QMV---DKN-ELLEYALVYGDY------KGIP----KKQIREY---------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~---~-~~i---~~~-~~~~~~~~~~~~------~~~~----~~~i~~~---------~~~g~~~v~~~~~q 192 (286)
+...+.... + ..+ .+. .+........++ +... .+.+.+. +......+++|++|
T Consensus 69 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 148 (221)
T TIGR02211 69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQ 148 (221)
T ss_pred hhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 543332221 1 111 111 111111111110 1111 1112222 22233457788999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++. ...+|+|+++++|++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-------~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-------AKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HhhcCEEEEEeCCEe
Confidence 99999999988888888 7777777777777643 23467778998876 355899999998865
No 115
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2.6e-20 Score=186.43 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=146.3
Q ss_pred chhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263 63 PVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN 136 (286)
Q Consensus 63 ~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~ 136 (286)
+..+.|+++|++.+|.. +|+++++.+.+ |+.|||+|..|||||||+..|-++.+ |.+|+ +|
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p-~eKVGIVGRTGaGKSSL~~aLFRl~e------------~~~G~I~ID 1200 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP-GEKVGIVGRTGAGKSSLILALFRLVE------------PAEGEILID 1200 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEEcC-CceEEEeCCCCCCHHHHHHHHHHhcC------------ccCCeEEEc
Confidence 34577999999999975 79999999999 99999999999999999999999987 67777 89
Q ss_pred CcceeeeCHHHHHHH---hhccchhhhheeccccc---CccHHHHHHHH------------hcCC--------cEEEEeC
Q 043263 137 GKDYFFVSKEEFLQM---VDKNELLEYALVYGDYK---GIPKKQIREYM------------AKGY--------DIVLRVD 190 (286)
Q Consensus 137 g~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~--------~~v~~~~ 190 (286)
|.|+..+...++|.. |+|+.++..+++.-|+. ..+++++.+++ +.|. .-++.||
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 999999999988875 48887776666655532 23444444442 2222 2233479
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+|-+.+|||++++..++|+ +|+.+...+++.|++. ...|...|+||+.+ +-.+|+|+|+++|++.|
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T-------Vmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT-------VMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch-------hhhcCeEEEeeCCeEee
Confidence 9999999999999999998 8888888888888875 45588899999999 67999999999998754
No 116
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=1.5e-20 Score=163.07 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=117.3
Q ss_pred HHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
+.++||++.|+ . .|+++++.+.+ |++++|+|+||||||||+++|+|+++ ..|+ ++|.++.
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~-Ge~~~IvG~nGsGKSTLl~~L~gl~~-------------~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISP-GQRVGLLGRTGSGKSTLLSAFLRLLN-------------TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcC-------------CCcEEEECCEEhh
Confidence 56788899984 2 69999999998 99999999999999999999999974 2344 6676654
Q ss_pred eeCHHHHHHHh---hccchhhhheeccccc--C-ccHHHHHHHH------------hcCC--------cEEEEeCHHHHH
Q 043263 142 FVSKEEFLQMV---DKNELLEYALVYGDYK--G-IPKKQIREYM------------AKGY--------DIVLRVDIQGAR 195 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~~--~-~~~~~i~~~~------------~~g~--------~~v~~~~~q~v~ 195 (286)
..+...++..+ .+...+....+..|+. + ...+.+.+++ +.+. ..+.+|++|++.
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 44444444322 2222111111111210 1 1222222221 1221 126678999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-------~~~dri~vl~~G~i 214 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-------LECQRFLVIEENKV 214 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-------HhCCEEEEecCCeE
Confidence 99999999998888 7887777777777754 234777789999873 46999999998876
No 117
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.6e-20 Score=158.33 Aligned_cols=176 Identities=19% Similarity=0.251 Sum_probs=115.7
Q ss_pred HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++|+++.|+ .+++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~ 68 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPK-GEIFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLVDGTD 68 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEE
Confidence 35677888875 268889999998 99999999999999999999999986 66666 66766
Q ss_pred eeeeCHHHH---HHHh----hccch------hhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHH
Q 043263 140 YFFVSKEEF---LQMV----DKNEL------LEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQG 193 (286)
Q Consensus 140 ~~~~~~~~~---~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~ 193 (286)
+...+.... +..+ ++..+ .++..+....++.. .+.+.+.+ ......+++|++|+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (233)
T cd03258 69 LTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148 (233)
T ss_pred cccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHH
Confidence 543332221 1111 11111 22211100011111 11222222 22334567789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++.
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV------KRICDRVAVMEKGEVV 220 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence 9999999988888888 7777777777777653 234677779988874 3679999999988763
No 118
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.79 E-value=2.4e-20 Score=157.40 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=113.9
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~ 68 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPE-GEIVALLGRNGAGKTTLLKTIMGLLP------------PRSGSIRFDGRDITGLP 68 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEcCCCC
Confidence 46778888865 78999999998 99999999999999999999999986 55555 5555443222
Q ss_pred HHHH-HHHh----hcc------chhhhheecccccC--ccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 145 KEEF-LQMV----DKN------ELLEYALVYGDYKG--IPKKQIREY----------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 145 ~~~~-~~~i----~~~------~~~~~~~~~~~~~~--~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
.... +..+ +.. ...++..+....+. ...+.+.+. +......+++|++|++.+|++++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 69 PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred HHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 2221 1111 111 11122111111111 001111111 12223456788999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFA------LEIADRAYVLERGRVV 211 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhccEEEEeeCCeEE
Confidence 88888888 7777777777777653 234667778988864 3679999999998764
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=2.5e-20 Score=156.41 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=111.3
Q ss_pred HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~ 68 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISA-GEFVFLVGPSGAGKSTLLKLIYKEEL------------PTSGTIRVNGQDVSDL 68 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEcccC
Confidence 35677777742 68899999998 99999999999999999999999986 55665 566554333
Q ss_pred CHHH---HHHHh---hcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263 144 SKEE---FLQMV---DKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 144 ~~~~---~~~~i---~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia 197 (286)
+... ++..+ .+. ...++..+....++... +.+.+.+ ......+++|++|++.+|
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred CHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 2211 11111 111 11222111100111111 1222222 223345677899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|+
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~ 213 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELV------DTTRHRVIALERGK 213 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCc
Confidence 999988888777 7777677777766653 234667778988774 35799999998875
No 120
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.79 E-value=1.6e-20 Score=158.23 Aligned_cols=174 Identities=20% Similarity=0.220 Sum_probs=112.5
Q ss_pred HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYK-GEIFGLLGHNGAGKTTTLKMLTGELR------------PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEeccc
Confidence 45677777753 68899999998 99999999999999999999999986 55665 55655432
Q ss_pred eCHHHHHHHh----hccc------hhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKNE------LLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----~~~~------~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iara 199 (286)
. ...+...+ ++.. ..++..+....++... +.+.+. .......+++|++|++.+|++
T Consensus 69 ~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 69 D-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred c-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 1 11111111 1111 1111111111111111 112222 122234566789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|+++.. ...||+++++++|++.
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA------EALCDRIAIMSDGKLR 211 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhcCEEEEEECCEEE
Confidence 9988888888 77777777777776532 23666778988874 3679999999988763
No 121
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=2.7e-20 Score=158.53 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=113.2
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~ 68 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRP-GEIHGLIGPNGAGKTTLFNLISGFLR------------PTSGSVLFDGEDITGLP 68 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCceEEECCEECCCCC
Confidence 45788888865 68999999998 99999999999999999999999986 55565 5555443322
Q ss_pred HHHHH-HH---h-hcc------chhhhheecccccC--------------ccHHHHHHHH---------hcCCcEEEEeC
Q 043263 145 KEEFL-QM---V-DKN------ELLEYALVYGDYKG--------------IPKKQIREYM---------AKGYDIVLRVD 190 (286)
Q Consensus 145 ~~~~~-~~---i-~~~------~~~~~~~~~~~~~~--------------~~~~~i~~~~---------~~g~~~v~~~~ 190 (286)
..... .. + ++. ...++..+...... ...+.+.+++ ......+++|+
T Consensus 69 ~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 148 (236)
T cd03219 69 PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQ 148 (236)
T ss_pred HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHH
Confidence 22211 10 1 111 11121111100000 0011222222 22223466789
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++.
T Consensus 149 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 149 QRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV------MSLADRVTVLDQGRVI 222 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEeCCEEE
Confidence 9999999999988888887 7777677777766643 234677779988875 3679999999988763
No 122
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=1e-19 Score=142.09 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=123.5
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.|+++++++..+. +|+++++.+.+ |+.++|+||||||||||+-.|+|+.. |.+|+ +.|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~-Ge~vaiVG~SGSGKSTLl~vlAGLd~------------~ssGeV~l~G~ 72 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKR-GETVAIVGPSGSGKSTLLAVLAGLDD------------PSSGEVRLLGQ 72 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecC-CceEEEEcCCCCcHHhHHHHHhcCCC------------CCCceEEEcCc
Confidence 5788999999875 69999999998 99999999999999999999999976 77887 7899
Q ss_pred ceeeeCHHHHHHHh--------hccchhhhheeccc------ccCc----cHHHHHHH---------HhcCCcEEEEeCH
Q 043263 139 DYFFVSKEEFLQMV--------DKNELLEYALVYGD------YKGI----PKKQIREY---------MAKGYDIVLRVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i--------~~~~~~~~~~~~~~------~~~~----~~~~i~~~---------~~~g~~~v~~~~~ 191 (286)
+...++.+...... +.-.++.+.....| +.+. ......+. +......+++|+.
T Consensus 73 ~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ 152 (228)
T COG4181 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ 152 (228)
T ss_pred chhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH
Confidence 98888776544432 11112222222222 2221 11111222 2222346778999
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+++||++...|++++- ||..+-..+..-+.... +.|...++|+..-+ ..|++++-+.+|+++
T Consensus 153 QRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-------~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-------ARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-------Hhhhheeeeecceec
Confidence 999999999966666655 66666666666655422 33667778987763 789999999999875
Q ss_pred H
Q 043263 263 S 263 (286)
Q Consensus 263 ~ 263 (286)
+
T Consensus 226 ~ 226 (228)
T COG4181 226 E 226 (228)
T ss_pred c
Confidence 3
No 123
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=2.2e-20 Score=156.64 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=110.3
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF----- 141 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~----- 141 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++....+.+. ++|.++.
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~----------~~g~~~~~~~~~ 70 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIAD-GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY----------IGGRDVTDLPPK 70 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCCcc
Confidence 45678888865 68999999998 999999999999999999999999863333333 3343321
Q ss_pred -----eeCHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 142 -----FVSKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
++.+.. .........++.......++... +.+.++ +......+++|+.|++.+|++++.+
T Consensus 71 ~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 71 DRDIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred cceEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111110 01111122222211101111111 112222 2233345778999999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++|++
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~g~~ 209 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA------MTMADRIAVMNDGQI 209 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEECCEE
Confidence 888777 7777677776666543 234677778988764 367999999988865
No 124
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=9.5e-21 Score=153.73 Aligned_cols=157 Identities=25% Similarity=0.278 Sum_probs=106.9
Q ss_pred hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~~~- 68 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEK-GEIYGLLGPNGAGKTTLIKIILGLLK------------PDSGEIKVLGKDIKKEP- 68 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcccch-
Confidence 4567777764 68899999998 99999999999999999999999986 66666 5666543221
Q ss_pred HHHHHHhhccchhh-hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHH
Q 043263 146 EEFLQMVDKNELLE-YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMAL 218 (286)
Q Consensus 146 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l 218 (286)
..++..+ .++. +...+ .+.+ +.+.+. +.+|++|++.+|++++.+|+++++ ||+.+...+
T Consensus 69 ~~~~~~i---~~~~q~~~~~---~~~t---v~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 134 (173)
T cd03230 69 EEVKRRI---GYLPEEPSLY---ENLT---VRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134 (173)
T ss_pred HhhhccE---EEEecCCccc---cCCc---HHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 1111111 1111 00011 1111 111121 788999999999999988888888 777777777
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 219 VERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 219 ~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.+.|.+.. +.+...++|+.... ...||+++++++|+
T Consensus 135 ~~~l~~~~~~g~tiii~th~~~~~------~~~~d~i~~l~~g~ 172 (173)
T cd03230 135 WELLRELKKEGKTILLSSHILEEA------ERLCDRVAILNNGR 172 (173)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHH------HHhCCEEEEEeCCC
Confidence 77766532 33566778887764 35799999998875
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.5e-20 Score=162.42 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=117.4
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++.
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGaGKSTLl~~i~G~~~------------p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYE-GEWVAIVGHNGSGKSTLAKLLNGLLL------------PEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEECC
Confidence 678899999863 78999999998 99999999999999999999999986 66666 6676654
Q ss_pred eeCHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 142 FVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
..+.......+ .+. ...++..+.....+... +.+.++ +......+++|++|++.+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence 33332222211 111 12222211111111121 112222 2333345677899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ..||+|+++++|++
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~-------~~~d~i~~l~~G~i 218 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA-------AQADRVIVMNKGEI 218 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-------HcCCEEEEEECCEE
Confidence 999988888888 77777777777666432 34677778988874 35999999988864
No 126
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.78 E-value=5e-20 Score=162.36 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=107.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh----h
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----D 153 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----~ 153 (286)
+++++++.+.+ |++++|+||||||||||+++|+|++. |.+|+ ++|.++.. ....++..+ +
T Consensus 8 ~l~~vs~~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q 73 (302)
T TIGR01188 8 AVDGVNFKVRE-GEVFGFLGPNGAGKTTTIRMLTTLLR------------PTSGTARVAGYDVVR-EPRKVRRSIGIVPQ 73 (302)
T ss_pred EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-CHHHHHhhcEEecC
Confidence 67888888887 99999999999999999999999986 66676 66765532 222222211 1
Q ss_pred ccch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263 154 KNEL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVFVF----- 209 (286)
Q Consensus 154 ~~~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~Il----- 209 (286)
...+ .++..+....++.... .+.+.+ ......+++|++|++.+|++++.+|+++|+
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1111 2222222222232211 122222 222345678899999999999988888888
Q ss_pred -EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+++.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~------~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEA------DKLCDRIAIIDHGRI 202 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 7777777777766653 234667779988875 367999999988865
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-20 Score=162.81 Aligned_cols=176 Identities=17% Similarity=0.199 Sum_probs=117.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~ 77 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPA-GKVTGLIGHNGSGKSTLLKMLGRHQP------------PSEGEILLDAQPLES 77 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCEehhh
Confidence 4788999999975 79999999998 99999999999999999999999986 56665 56655433
Q ss_pred eCHHHHHHHh---hcc-c------hhhhheeccc-cc-------CccHHHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263 143 VSKEEFLQMV---DKN-E------LLEYALVYGD-YK-------GIPKKQIREY---------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~~~~~i---~~~-~------~~~~~~~~~~-~~-------~~~~~~i~~~---------~~~g~~~v~~~~~q~v~ 195 (286)
.....++..+ .+. . ..++..+... .. ....+.+.+. +......+++|+.|++.
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 78 WSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred CCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH
Confidence 2332222211 111 1 1111111000 00 0011122222 22223456789999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i------~~~~d~i~~l~~G~i 226 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA------ARYCDYLVALRGGEM 226 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence 99999988888888 7777777776666543 234667778988874 367999999988875
No 128
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.4e-19 Score=145.99 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=117.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
|+.+|++++..+ .+++++++..+ |++++|+|||||||||+++.|+|.+. |..|+ ++|.+....
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~p-Gev~ailGPNGAGKSTlLk~LsGel~------------p~~G~v~~~g~~l~~~ 68 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRP-GEVLAILGPNGAGKSTLLKALSGELS------------PDSGEVTLNGVPLNSW 68 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccC-CcEEEEECCCCccHHHHHHHhhCccC------------CCCCeEeeCCcChhhC
Confidence 445677777765 78999999998 99999999999999999999999886 77887 788888777
Q ss_pred CHHHHHHH---hhccch------hhhheecccc-c--Ccc--HHH--HHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEEFLQM---VDKNEL------LEYALVYGDY-K--GIP--KKQ--IREY---------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~~~~~---i~~~~~------~~~~~~~~~~-~--~~~--~~~--i~~~---------~~~g~~~v~~~~~q~v~iar 198 (286)
...++... ++|..- +.+..-++.. + +-. .+. ..++ ....+..+++|+.||+.+||
T Consensus 69 ~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 69 PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred CHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHH
Confidence 77665443 233321 1111122221 1 111 111 2222 23456788899999999999
Q ss_pred HHhCC-Cc----EEEEEecCCHH-------HHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGD-SA----VFVFLAAESEM-------ALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~-~~----~~Illd~~~~~-------~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+..- ++ .++|||+|+-. ...+-.++ +.+.....|.|+++-+ ..+||+|+++.+|++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA------A~YaDrivll~~Grv 219 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA------AQYADRIVLLHQGRV 219 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH------HHhhheeeeeeCCeE
Confidence 88632 22 37888888643 22222222 2233666778998876 589999999998875
No 129
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=1.4e-20 Score=153.93 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=112.2
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++++|+++.| .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+.
T Consensus 5 l~~~~l~~~~--~l~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 5 LEVRGLSVKG--AVRDVSFEVRA-GEIVGIAGLVGNGQTELAEALFGLRP------------PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEeccEEEe--eecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCccCH
Confidence 5677888888 78999999998 99999999999999999999999986 67776 67766543332
Q ss_pred H-HHHHHhhccchhhhh----eecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCC
Q 043263 146 E-EFLQMVDKNELLEYA----LVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAES 214 (286)
Q Consensus 146 ~-~~~~~i~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~ 214 (286)
. ..+..+ .+.... .++.. ....+.+.-... +.+|++|++.+|++++.+|+++++ ||+.+
T Consensus 70 ~~~~~~~i---~~~~q~~~~~~~~~~--~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 139 (182)
T cd03215 70 RDAIRAGI---AYVPEDRKREGLVLD--LSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139 (182)
T ss_pred HHHHhCCe---EEecCCcccCcccCC--CcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence 2 111111 111100 00100 011111111111 788999999999999988888888 88877
Q ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 215 EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 215 ~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
...+.+.+.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 140 ~~~l~~~l~~~~~~~~tiii~sh~~~~~------~~~~d~v~~l~~G~i 182 (182)
T cd03215 140 KAEIYRLIRELADAGKAVLLISSELDEL------LGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEecCCcC
Confidence 77777777653 234667778988764 367999999988853
No 130
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.1e-21 Score=171.06 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=114.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |+.|+ ++|.++...
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLL~~iaGl~~------------p~~G~I~~~g~~i~~~ 70 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLED------------ITSGDLFIGEKRMNDV 70 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCCC
Confidence 567888999875 68999999998 99999999999999999999999986 55555 455544322
Q ss_pred CHHHHHH--Hh-hcc------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 144 SKEEFLQ--MV-DKN------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 144 ~~~~~~~--~i-~~~------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
+... +. ++ ++. ...++..+....++... +.+.++ +......+++|++||+++||+++
T Consensus 71 ~~~~-~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 71 PPAE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred CHhH-CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 2211 00 01 111 11222111101111121 122222 22233457789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~------~~~~d~i~vl~~G~i 212 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA------MTLADKIVVLDAGRV 212 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 88888887 7777666666655542 244777889988875 478999999998865
No 131
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.9e-20 Score=158.92 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=114.7
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~------------p~~G~i~i~g~~~~~~~ 92 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVRE-GEIFVIMGLSGSGKSTLLRCINRLIE------------PTSGKVLIDGQDIAAMS 92 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEccccC
Confidence 67799999987 69999999998 99999999999999999999999986 55555 5565443222
Q ss_pred HHHHH----HH---h-hcc------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 145 KEEFL----QM---V-DKN------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 145 ~~~~~----~~---i-~~~------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
...+. .. + +.. ...++..+.....+... +.+.+. +......+++|++|++.+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 93 RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence 22111 00 0 111 11111111000111111 112222 2333345778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~------~~~~d~v~~l~~G~i 239 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA------LRLGDRIAIMKDGRL 239 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence 999988888888 7777677777766543 234667778988764 367999999988875
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.78 E-value=1.4e-20 Score=153.70 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=112.3
Q ss_pred hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++|+++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+.
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~-G~~~~l~G~nGsGKStLl~~i~G~~~------------~~~G~v~~~g~~~~~~~~ 68 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEA-GEIVGILGPNGAGKSTLLKTLAGLLK------------PSSGEILLDGKDLASLSP 68 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCcCCH
Confidence 4567777764 68889999987 99999999999999999999999986 66776 66766543333
Q ss_pred HHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHH
Q 043263 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALV 219 (286)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~ 219 (286)
..+...+ .++.. .-...++ ...+......+.+|+.|+++++|+++.+|+++|+ ||+.+...+.
T Consensus 69 ~~~~~~i---~~~~q---~l~~~gl-----~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 69 KELARKI---AYVPQ---ALELLGL-----AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHHHHHH---hHHHH---HHHHcCC-----HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 3322211 11111 0011111 1122334456888999999999999988888887 6666666776
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 220 ERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 220 ~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~~~~------~~~~d~~~~l~~g~i 176 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDLNLA------ARYADRVILLKDGRI 176 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 6665431 33667778888864 368999999998875
No 133
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.6e-20 Score=159.17 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=112.7
Q ss_pred HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 68 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAK-GEFLVLIGPSGSGKTTTMKMINRLIE------------PTSGEIFIDGEDIREQ 68 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCeEcCcC
Confidence 35677777753 68889999998 99999999999999999999999986 55555 556544332
Q ss_pred CHHHHHHHh---hcc-------chhhhheecccccCcc----HHHHHHHH-----------hcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGIP----KKQIREYM-----------AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~~----~~~i~~~~-----------~~g~~~v~~~~~q~v~iar 198 (286)
+...++..+ .+. ...++..+.....+.. .+.+.+.+ ......+++|++|++.+|+
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 69 DPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred ChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 222222111 111 1122221111111111 11122222 1222346678999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++|++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~------~~~~d~i~~l~~G~i 214 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA------FRLADRIAIMKNGEI 214 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99988888888 7777777777766653 234667779988764 368999999998876
No 134
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.5e-20 Score=163.19 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=114.1
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~-Ge~v~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 68 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKK-GSYTALIGHTGSGKSTLLQHLNGLLQ------------PTEGKVTVGDI 68 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 456778888852 68899999998 99999999999999999999999986 66665 5666
Q ss_pred ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263 139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~ 189 (286)
++... ....++..+ .+. ...++..+....++...+ .+.+++ ......+++|
T Consensus 69 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 148 (288)
T PRK13643 69 VVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG 148 (288)
T ss_pred ECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHH
Confidence 54211 112222211 111 111221111111122221 122222 2222446678
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++++|++++.+|+++|+ ||+.+...+.+.|.+. .+.|...++|+++.. ...||+|+++++|++
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~------~~~~dri~~l~~G~i 222 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV------ADYADYVYLLEKGHI 222 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999999999988888888 7777677776666542 244777889988874 367999999998865
No 135
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=4.5e-20 Score=156.03 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=116.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRA-GEFKLITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDIST 73 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCeEEECCEEcCc
Confidence 3678899999975 79999999998 99999999999999999999999876 55665 55554432
Q ss_pred eCHHHHHHHh---hcc------chhhhheecccccCc--cHHHHHHHH----------hcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGI--PKKQIREYM----------AKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~--~~~~i~~~~----------~~g~~~v~~~~~q~v~iaral~ 201 (286)
.+...++..+ .+. ...++..+....+.. ..+.+.+.+ ......+++|+.|++.++++++
T Consensus 74 ~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 74 LKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred CCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2222222211 111 112221110001111 111222222 2223446678899999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC--CCCHHHHHHH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA--EGKLDSAVKL 267 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~--~G~i~~~~~~ 267 (286)
.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+.+.. ..||++++++ .|.+++..-+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~-------~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI-------NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH-------HhCCEEEEEecccchHhhhhhc
Confidence 88888888 7777677776666543 234667778887763 4699998884 5677665443
No 136
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.1e-20 Score=163.50 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=114.1
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
++++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 69 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIED-GEFVGLIGHTGSGKSTLIQHLNGLLK------------PTSGKIIIDGV 69 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEECCE
Confidence 456777887752 68899999998 99999999999999999999999986 56665 5665
Q ss_pred ceeeeC--HHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHHhc-----------CCcEEEEeC
Q 043263 139 DYFFVS--KEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYMAK-----------GYDIVLRVD 190 (286)
Q Consensus 139 ~~~~~~--~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~~~-----------g~~~v~~~~ 190 (286)
++...+ ...++..+ .+. ...++..+....++...+ .+.++++. ....+++|+
T Consensus 70 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ 149 (287)
T ss_pred ECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence 543211 11222111 111 112221111111122222 22222221 223456789
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++|++
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~drv~~l~~G~i 223 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV------AKLADRIIVMNKGKC 223 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999999988888888 7777777776666542 244777889998874 367999999988864
No 137
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.78 E-value=3.9e-20 Score=156.74 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=114.4
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~ 72 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKR-GETIALIGESGSGKSTLLAILAGLDD------------GSSGEVSLVGQ 72 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCeeEEECCE
Confidence 4678888888863 68999999998 99999999999999999999999986 56665 5665
Q ss_pred ceeeeCHHHH---H-HHh---hcc-c------hhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCH
Q 043263 139 DYFFVSKEEF---L-QMV---DKN-E------LLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~---~-~~i---~~~-~------~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~ 191 (286)
++...+.... + ..+ .+. . ..++..+....++.. .+.+.+. +......+++|++
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~ 152 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence 5443333221 1 111 111 1 111111100011111 1122222 2233345778899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|+++. ...||+++++++|++
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-------~~~~d~i~~l~~g~i 224 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-------AARCDRRLRLVNGQL 224 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence 999999999988887777 7776677777777543 23466777898776 345999999998876
No 138
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=9.4e-21 Score=152.20 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=106.5
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~v~~~g~~~~~~~ 68 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRR-GEVHALLGENGAGKSTLMKILSGLYK------------PDSGEILVDGKEVSFAS 68 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEECCcCC
Confidence 45677888865 78899999998 99999999999999999999999986 66666 5665543222
Q ss_pred HHH-HHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263 145 KEE-FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA 217 (286)
Q Consensus 145 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~ 217 (286)
... .+..+ .+. + .+.+|++|++.+|++++.+|+++++ ||+.+...
T Consensus 69 ~~~~~~~~i---~~~-----~--------------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 69 PRDARRAGI---AMV-----Y--------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred HHHHHhcCe---EEE-----E--------------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 111 00000 000 0 0778999999999999988888888 77776777
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 218 LVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 218 l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+.+.+.+.. +.+...++|++... ...||+++++++|++.
T Consensus 121 l~~~l~~~~~~~~tiii~sh~~~~~------~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 121 LFKVIRRLRAQGVAVIFISHRLDEV------FEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence 777666532 33666778888764 3679999999988753
No 139
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.3e-21 Score=171.01 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=117.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+.. |..|+ ++|+++..
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYK-GEIFALLGASGCGKSTLLRMLAGFEQ------------PTAGQIMLDGVDLSH 85 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence 4788999999976 68899999998 99999999999999999999999986 56665 56665433
Q ss_pred eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~ 201 (286)
..... +....++..++.+..+..|+ .+.... .+.+.+ ......+++|+.||+++||+++
T Consensus 86 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 86 VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred CCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 22211 00011222222222222221 112221 222222 2223456788999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|.++++ ||+...+.+.+.|. ++.+.+...++|+.+.+ ...||+|+++++|++
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~laDri~vl~~G~i 228 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA------MTMAGRIAIMNRGKF 228 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEeCCEE
Confidence 88888777 67666666654433 33344777789988875 478999999998865
No 140
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=6.6e-20 Score=168.29 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=119.9
Q ss_pred hHHHhHhHHHHhcc-------------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC
Q 043263 66 KIELLRSLEASLGH-------------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-------------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~ 132 (286)
..++++||++.|.. +++++++.+.+ |+++||+|+|||||||++++|+|+.+ |..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~-GE~lglVGeSGsGKSTlar~i~gL~~------------P~~ 345 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE-GETLGLVGESGSGKSTLARILAGLLP------------PSS 345 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCC
Confidence 34678888888861 47888999998 99999999999999999999999987 656
Q ss_pred CC--cCCcceeeeCHHHHHH------Hhhccch--------hhh-----heecccccCcc-HHHHHH----------HHh
Q 043263 133 GE--VNGKDYFFVSKEEFLQ------MVDKNEL--------LEY-----ALVYGDYKGIP-KKQIRE----------YMA 180 (286)
Q Consensus 133 G~--~~g~~~~~~~~~~~~~------~i~~~~~--------~~~-----~~~~~~~~~~~-~~~i~~----------~~~ 180 (286)
|. ++|.+ ...+...+.. ++.|+.+ +.+ ...+....... .+.+.+ .+.
T Consensus 346 G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ 424 (539)
T COG1123 346 GSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLD 424 (539)
T ss_pred ceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHh
Confidence 65 55655 2222222221 1122221 000 00010000000 111211 244
Q ss_pred cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
+...-+++||+||+++||++..+|.++|+ ||+.....+.+- |+++-+.+...|+|+++.. ...||
T Consensus 425 ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV------~~i~d 498 (539)
T COG1123 425 RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV------RYIAD 498 (539)
T ss_pred cCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH------HhhCc
Confidence 55577889999999999999989988888 777655555544 4445556888899999986 47899
Q ss_pred EEEECCCCCHHHH
Q 043263 252 YVVVNAEGKLDSA 264 (286)
Q Consensus 252 ~viv~~~G~i~~~ 264 (286)
+|.++.+|++.|.
T Consensus 499 rv~vm~~G~iVE~ 511 (539)
T COG1123 499 RVAVMYDGRIVEE 511 (539)
T ss_pred eEEEEECCeEEEe
Confidence 9999999987554
No 141
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-20 Score=163.38 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=113.8
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
++++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 69 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPS-GSYVAIIGHTGSGKSTLLQHLNGLLQ------------PTSGTVTIGER 69 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 456788888852 78999999998 99999999999999999999999986 55665 5666
Q ss_pred ceee----eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH----------HhcCCcEEEEe
Q 043263 139 DYFF----VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY----------MAKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~----~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~----------~~~g~~~v~~~ 189 (286)
++.. .....++..+ .+. ...++..+.....+...+ .+.++ .......+++|
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (290)
T PRK13634 70 VITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGG 149 (290)
T ss_pred ECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHH
Confidence 5421 1111222211 111 111111111001122221 12222 12233456678
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|+
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~------~~~~drv~~l~~G~ 223 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA------ARYADQIVVMHKGT 223 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCE
Confidence 99999999999988888888 7777677776666543 244778889988875 36799999998886
Q ss_pred H
Q 043263 261 L 261 (286)
Q Consensus 261 i 261 (286)
+
T Consensus 224 i 224 (290)
T PRK13634 224 V 224 (290)
T ss_pred E
Confidence 4
No 142
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.6e-20 Score=156.12 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=109.7
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce--
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY-- 140 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~-- 140 (286)
+++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----------~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEE-GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL----------VDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECcc
Confidence 35677777753 68888999998 999999999999999999999999863333332 344332
Q ss_pred -----eeeCHHHHHHHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263 141 -----FFVSKEEFLQMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 141 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~ 202 (286)
.++.+.. ..+......++..+....++.. .+.+.+. +......+++|++|++.+|++++.
T Consensus 71 ~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 71 PGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred ccCcEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1111110 0111111122211110011111 1112222 223335577899999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC--CCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA--EGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~--~G~i 261 (286)
+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||++++++ +|++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA------VFLADRVVVLSARPGRI 212 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhCCEEEEEECCCCEE
Confidence 8888888 8887777777777653 234677779988864 36799999988 6765
No 143
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.2e-19 Score=165.50 Aligned_cols=174 Identities=25% Similarity=0.336 Sum_probs=120.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|++|+|++ +|+++++.+.+ |++++|+|.||||||||+|+|+|.+. |++|+ ++|+.+.+
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~-GEV~aL~GeNGAGKSTLmKiLsGv~~------------p~~G~I~~~G~~~~~ 74 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRP-GEVHALLGENGAGKSTLMKILSGVYP------------PDSGEILIDGKPVAF 74 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeC-ceEEEEecCCCCCHHHHHHHHhCccc------------CCCceEEECCEEccC
Confidence 4678999999998 89999999998 99999999999999999999999997 88888 88998888
Q ss_pred eCHHHHHHH----h-hccchhhhh-----eeccccc----C-ccHHHH----HHHHhc-C----CcE----EEEeCHHHH
Q 043263 143 VSKEEFLQM----V-DKNELLEYA-----LVYGDYK----G-IPKKQI----REYMAK-G----YDI----VLRVDIQGA 194 (286)
Q Consensus 143 ~~~~~~~~~----i-~~~~~~~~~-----~~~~~~~----~-~~~~~i----~~~~~~-g----~~~----v~~~~~q~v 194 (286)
.++.+-... + +...+.++. .+.+... + ++++.. .+.+.. + .+. +..+++|.+
T Consensus 75 ~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 75 SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence 777664442 1 222222222 2222211 1 222222 222331 1 111 123577999
Q ss_pred HHHHHHhCCCcEEEEEecCCH-------HH---HHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVFLAAESE-------MA---LVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Illd~~~~-------~~---l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|||++..++. +|++|+|+- +. ++++|++++ -+...|+||++.. ...||+|.|+.||+.
T Consensus 155 eIArAl~~~ar-llIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G-v~ii~ISHrl~Ei------~~i~DritVlRDG~~ 223 (500)
T COG1129 155 EIARALSFDAR-VLILDEPTAALTVKETERLFDLIRRLKAQG-VAIIYISHRLDEV------FEIADRITVLRDGRV 223 (500)
T ss_pred HHHHHHhcCCC-EEEEcCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHH------HHhcCEEEEEeCCEE
Confidence 99999986555 555565552 23 334555544 3788889999987 589999999999964
No 144
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.3e-20 Score=160.89 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=115.3
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.++|+++.|+ . .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++..
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 70 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPR-NSRIAVIGPNGAGKSTLFRHFNGILK------------PTSGSVLIRGEPITK 70 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCc
Confidence 45678888885 2 79999999998 99999999999999999999999987 56665 56665432
Q ss_pred eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263 143 VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 143 ~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iar 198 (286)
.+...+...+ .+. ...++..+.....+...+ .+.++ +......+++|++|++.+|+
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 2222222221 111 111111111111122221 12222 23334556788999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.+.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~------~~~~drv~~l~~G~i 216 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV------PEMADYIYVMDKGRI 216 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCeE
Confidence 99988888887 6766667776666542 234677779988874 368999999988864
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=1.3e-20 Score=161.98 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=113.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~~ 68 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAA-GEKVALIGPSGSGKSTILRILMTLEP------------IDEGQIQVEGEQLYHMP 68 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence 46788888875 78999999998 99999999999999999999999986 55555 5565443211
Q ss_pred ----------H---HHHHHHh----hccchhhhheecccc-------cCccH----HHHHHH---------HhcCCcEEE
Q 043263 145 ----------K---EEFLQMV----DKNELLEYALVYGDY-------KGIPK----KQIREY---------MAKGYDIVL 187 (286)
Q Consensus 145 ----------~---~~~~~~i----~~~~~~~~~~~~~~~-------~~~~~----~~i~~~---------~~~g~~~v~ 187 (286)
. ..++..+ ++..+.....+..++ .+... +.+.+. +......++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 148 (252)
T TIGR03005 69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLS 148 (252)
T ss_pred cccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcC
Confidence 0 1112111 111111111111110 11111 112222 223334577
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+|+.|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~ 222 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA------REFADRVCFFDK 222 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhcCEEEEEEC
Confidence 8899999999999988888877 7777677776666543 234677789988874 367999999998
Q ss_pred CCHH
Q 043263 259 GKLD 262 (286)
Q Consensus 259 G~i~ 262 (286)
|++.
T Consensus 223 G~i~ 226 (252)
T TIGR03005 223 GRIV 226 (252)
T ss_pred CEEE
Confidence 8763
No 146
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.77 E-value=4.2e-20 Score=157.43 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=112.2
Q ss_pred HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKP-GEVVGIVGRSGSGKSTLTKLIQRFYV------------PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCeehHh
Confidence 35677777752 68889999998 99999999999999999999999986 55665 56655433
Q ss_pred eCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------HH-----------HhcCCcEEEEeCHHH
Q 043263 143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------EY-----------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~~-----------~~~g~~~v~~~~~q~ 193 (286)
.+...++..+ .+. ...++..+... ......+. +. +......+++|++|+
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred cCHHHHhhcEEEEcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 3332222211 111 11122111110 11111111 11 122335677889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ..||+++++++|++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-------~~~d~v~~l~~G~i 214 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-------KNADRIIVMEKGRI 214 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence 9999999988888887 77777777777776542 34666778988773 46999999998876
No 147
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=6.9e-20 Score=153.63 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=110.2
Q ss_pred hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee----
Q 043263 70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF---- 141 (286)
Q Consensus 70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~---- 141 (286)
++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~~ 68 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKP-GEFLAIVGPNGAGKSTLLKAILGLLK------------PTSGSIRVFGKPLEKERK 68 (213)
T ss_pred cccceeEECCEEeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCccHHHHHh
Confidence 5678888875 78999999998 99999999999999999999999986 56665 5554431
Q ss_pred ---eeCHHHHHHHhhccchhhhheeccccc--------CccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263 142 ---FVSKEEFLQMVDKNELLEYALVYGDYK--------GIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 142 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~ 201 (286)
++.++............++.......+ ....+.+.++ +......+++|++|++.+|++++
T Consensus 69 ~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 69 RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred heEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 111100000000011112211100000 0011122222 23334567789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~~~ 209 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV------LEYFDRVLLLNRTV 209 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEcCcE
Confidence 88888888 7777777777766653 233667779988874 36799999998763
No 148
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.8e-20 Score=156.89 Aligned_cols=170 Identities=16% Similarity=0.249 Sum_probs=109.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~-- 66 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEK-GEIFGLLGPNGAGKTTTIRMILGIIL------------PDSGEVLFDGKPLDI-- 66 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCCchhH--
Confidence 35677777764 68899999998 99999999999999999999999986 55555 45544321
Q ss_pred HHHHHHHh----hc------cchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263 145 KEEFLQMV----DK------NELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 145 ~~~~~~~i----~~------~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~ 201 (286)
..+..+ ++ ....++.......++.. .+.+.+.+ ......+++|++|++.+|++++
T Consensus 67 --~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 67 --AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred --HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh
Confidence 011100 11 11122211111111111 11122221 2222446678999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+++++++|++
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~i 206 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV------EELCDRVLLLNKGRA 206 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH------HHhhhEEEEEeCCEE
Confidence 88887777 66666667766665432 33677778988764 367999999998875
No 149
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.9e-20 Score=149.83 Aligned_cols=156 Identities=22% Similarity=0.296 Sum_probs=103.9
Q ss_pred hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~-G~~~~l~G~nGsGKstLl~~i~G~~~------------~~~G~i~~~g~~~~~~ 69 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKP-GEKVAIVGPSGSGKSTLLKLLLRLYD------------PTSGEILIDGVDLRDL 69 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCCEEEECCEEhhhc
Confidence 4566666643 58888888888 99999999999999999999999986 66676 567655333
Q ss_pred CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA 217 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~ 217 (286)
+...++..+ .+..... ..+.. .+.+.+ +.+|++|++.++++++.+|+++|+ ||+.+...
T Consensus 70 ~~~~~~~~i---~~~~~~~---~~~~~---t~~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~ 134 (171)
T cd03228 70 DLESLRKNI---AYVPQDP---FLFSG---TIRENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134 (171)
T ss_pred CHHHHHhhE---EEEcCCc---hhccc---hHHHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 333322211 1110000 01110 111111 778999999999999988877777 66666667
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 218 LVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 218 l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
+.+.+.+.. +.+...++|++... ..||+++++++|+
T Consensus 135 l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~~~~l~~g~ 171 (171)
T cd03228 135 ILEALRALAKGKTVIVIAHRLSTI-------RDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHH-------HhCCEEEEEcCCC
Confidence 767666542 23556668887764 3499999998774
No 150
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=1.6e-20 Score=153.17 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=107.2
Q ss_pred hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 69 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQ-GEKIALLGRSGSGKSTLLQLLTGDLK------------PQQGEITLDGVPVSDL 69 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCEEHHHH
Confidence 4566676642 68888999998 99999999999999999999999986 66776 566544221
Q ss_pred CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA 217 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~ 217 (286)
...++..+ .+..... .++.. .+.+.+ ...+.+|++|++.++|+++.+|+++|+ ||+.+.+.
T Consensus 70 -~~~~~~~i---~~~~q~~---~~~~~---tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~ 136 (178)
T cd03247 70 -EKALSSLI---SVLNQRP---YLFDT---TLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136 (178)
T ss_pred -HHHHHhhE---EEEccCC---eeecc---cHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 11222111 1111000 01110 112212 355778999999999999988888887 77766777
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 218 LVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 218 l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+.|.+.. +.+...++|.... ...||+++++++|++
T Consensus 137 l~~~l~~~~~~~tii~~sh~~~~-------~~~~d~~~~l~~g~i 174 (178)
T cd03247 137 LLSLIFEVLKDKTLIWITHHLTG-------IEHMDKILFLENGKI 174 (178)
T ss_pred HHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence 777776542 2355666887776 346999999998875
No 151
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.5e-20 Score=159.78 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=113.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF- 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~- 142 (286)
++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~ 68 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSL-SPVTGLVGANGCGKSTLFMNLSGLLR------------PQKGAVLWQGKPLDYS 68 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCccEEEECCEEcccc
Confidence 456788888875 78999999998 99999999999999999999999986 55665 55655421
Q ss_pred -eCHHHHHHHh---hcc-c-------hhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263 143 -VSKEEFLQMV---DKN-E-------LLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 143 -~~~~~~~~~i---~~~-~-------~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia 197 (286)
.....++..+ .+. . ..++.......++... +.+.+++ ......+++|++|++.+|
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 69 KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 1111222111 111 1 1111111001111111 1122222 222345678999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~------~~~~d~i~~l~~G~i 214 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQI 214 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 999988888888 7777777777766653 234666778988874 367999999988875
No 152
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=4.7e-20 Score=156.41 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=113.5
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~ 68 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPK-GEVTCVLGRNGVGKTTLLKTLMGLLP------------VKSGSIRLDGEDITKLP 68 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEECCCCC
Confidence 45778888875 78999999998 99999999999999999999999986 55665 5555443333
Q ss_pred HHHH-HHH---hhcc-ch------hhhheecccccCccH----HHHH-------HHHhcCCcEEEEeCHHHHHHHHHHhC
Q 043263 145 KEEF-LQM---VDKN-EL------LEYALVYGDYKGIPK----KQIR-------EYMAKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 145 ~~~~-~~~---i~~~-~~------~~~~~~~~~~~~~~~----~~i~-------~~~~~g~~~v~~~~~q~v~iaral~~ 202 (286)
.... ... +.+. .+ .++..+....++... +.+. .........+++|+.|++.++++++.
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 69 PHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 2211 111 1111 11 111111000111111 1111 11223334567889999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA------RELADRYYVMERGRV 210 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 8888888 77777777777776532 34667778988874 357999999988865
No 153
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3e-20 Score=162.50 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=115.0
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
++++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~L~Gl~~------------p~~G~i~~~g~ 69 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQ-GKYYAIVGQTGSGKSTLIQNINALLK------------PTTGTVTVDDI 69 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 456788888852 78999999998 99999999999999999999999986 56665 5665
Q ss_pred ceeeeC----HHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263 139 DYFFVS----KEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~~~----~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~ 189 (286)
++.... ...++..+ .+. .+.++..+.....+...+ .+.+++ ......+++|
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred ECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 543211 11222211 111 111221111001112211 122221 2233456678
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.+.+. .+.|...++|+++.. ...||+|+++++|+
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~------~~~~dri~~l~~G~ 223 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV------ARYADEVIVMKEGS 223 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCE
Confidence 99999999999989988888 7777777776666542 345778889998874 36799999998886
Q ss_pred H
Q 043263 261 L 261 (286)
Q Consensus 261 i 261 (286)
+
T Consensus 224 i 224 (286)
T PRK13646 224 I 224 (286)
T ss_pred E
Confidence 4
No 154
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.77 E-value=3e-20 Score=161.25 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=115.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPR-GKITAIMGPSGIGKTTLLRLIGGQIA------------PDHGEILFDGENIPA 73 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEccc
Confidence 4788999999975 68999999998 99999999999999999999999986 55665 55655432
Q ss_pred eCHHH---HHHHh----hccc------hhhhheeccccc-CccH----HHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263 143 VSKEE---FLQMV----DKNE------LLEYALVYGDYK-GIPK----KQIREY---------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~---~~~~i----~~~~------~~~~~~~~~~~~-~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ 195 (286)
.+... ++..+ ++.. ..++.......+ .... +.+.+. .......+++|++|++.
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 22211 11111 1111 111111100000 1111 111122 22233457788999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++|++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~------~~~~d~v~~l~~G~i 222 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV------LSIADHAYIVADKKI 222 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhhCEEEEEECCEE
Confidence 99999988888877 7777677776666653 234677779988764 367999999988865
No 155
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-19 Score=164.07 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=121.3
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..+.+.++.+.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~L~~isl~i~~-Gei~~LvG~NGsGKSTLLr~I~Gl~~------------p~sG~I~i~G~~i~ 93 (400)
T PRK10070 27 QGLSKEQILEKTGLSLGVKDASLAIEE-GEIFVIMGLSGSGKSTMVRLLNRLIE------------PTRGQVLIDGVDIA 93 (400)
T ss_pred ccccHHHHHhhcCCeEEEEeEEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCC------------CCCCEEEECCEECC
Confidence 34677888888886 68999999998 99999999999999999999999986 67776 6777665
Q ss_pred eeCHHHHHH----H---h-hccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHH
Q 043263 142 FVSKEEFLQ----M---V-DKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGA 194 (286)
Q Consensus 142 ~~~~~~~~~----~---i-~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v 194 (286)
..+...+.. . + ++..+..+..+..+ .++... +.+.+++ ......+++|++|++
T Consensus 94 ~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv 173 (400)
T PRK10070 94 KISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV 173 (400)
T ss_pred cCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH
Confidence 444433221 1 1 11112111111111 112221 1222222 223345678899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~------~~~~Dri~vL~~G~i 243 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA------MRIGDRIAIMQNGEV 243 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888888 7777777777766542 244777789988875 478999999998865
No 156
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1e-18 Score=148.78 Aligned_cols=163 Identities=21% Similarity=0.254 Sum_probs=121.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-----
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----- 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----- 152 (286)
.+.+.++.++. |+|.+|+|-||||||||+++|.++.+ |..|+ ++|.|+..++..+++...
T Consensus 43 Gv~~~sl~v~~-GeIfViMGLSGSGKSTLvR~~NrLie------------pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~s 109 (386)
T COG4175 43 GVNDASLDVEE-GEIFVIMGLSGSGKSTLVRLLNRLIE------------PTRGEILVDGKDIAKLSAAELRELRRKKIS 109 (386)
T ss_pred eeccceeeecC-CeEEEEEecCCCCHHHHHHHHhccCC------------CCCceEEECCcchhcCCHHHHHHHHhhhhh
Confidence 48888999998 99999999999999999999999987 88888 899999988888776643
Q ss_pred ---hccchhhhheeccc------ccCccHHHHHH----H---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 153 ---DKNELLEYALVYGD------YKGIPKKQIRE----Y---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 153 ---~~~~~~~~~~~~~~------~~~~~~~~i~~----~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
++-.++.+..+..| ..+.++++-++ + ..+...-+++|..||+.+|||+..+|+++++
T Consensus 110 MVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 110 MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred hhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence 33333333333333 34555443222 2 2233456778899999999999988888877
Q ss_pred -----EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -----LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|||--...++.-|. ++-..|+..|+|+++.+ ++..|+|.++.+|.+
T Consensus 190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA------lriG~rIaimkdG~i 243 (386)
T COG4175 190 EAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA------LRIGDRIAIMKDGEI 243 (386)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH------HhccceEEEecCCeE
Confidence 77765555554433 33445888899999998 699999999999975
No 157
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.8e-20 Score=157.91 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=111.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
++++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|.++...+.
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----------~~g~~~~~~~~ 71 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPS-GELVALLGPSGSGKTTLLRLIAGLERPDSGTIL----------FGGEDATDVPV 71 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCCc
Confidence 456788888875 79999999998 999999999999999999999999863333322 34433211110
Q ss_pred H--HHH------HHhhccchhhhheecccccCc----c----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263 146 E--EFL------QMVDKNELLEYALVYGDYKGI----P----KKQIREY---------MAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 146 ~--~~~------~~i~~~~~~~~~~~~~~~~~~----~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral 200 (286)
. .+. .........++..+....++. . .+.+.++ .......+++|++|++.+|+++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 0 000 000011112221111000000 1 1112222 2223345778999999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i 215 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA------LEVADRVVVMNKGRI 215 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence 988888887 7777677777766643 234677789988764 367999999988875
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.5e-20 Score=159.80 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=116.9
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..+.++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++.
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~ 72 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPD-GHFTAIIGPNGCGKSTLLRTLSRLMT------------PAHGHVWLDGEHIQ 72 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCcEEEECCEEhh
Confidence 34778899999975 79999999998 99999999999999999999999986 55555 5565443
Q ss_pred eeCHHHHHHHh----hccch------hhhheec--cc---c--c-CccHHHHHHH---------HhcCCcEEEEeCHHHH
Q 043263 142 FVSKEEFLQMV----DKNEL------LEYALVY--GD---Y--K-GIPKKQIREY---------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 142 ~~~~~~~~~~i----~~~~~------~~~~~~~--~~---~--~-~~~~~~i~~~---------~~~g~~~v~~~~~q~v 194 (286)
..+...+...+ ++..+ .++.... .. . . ....+.+.+. ..+....+++|++|++
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 73 HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA 152 (265)
T ss_pred hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHH
Confidence 22222222211 11111 1111110 00 0 0 0011112222 2334456778999999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i 222 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA------CRYASHLIALREGKI 222 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888887 7777676776666543 234667778988864 478999999988864
No 159
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.77 E-value=5e-20 Score=155.99 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=111.8
Q ss_pred HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
+.++||++.|+ ..++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~ 68 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKK-GETLGLVGESGSGKSTLARAILGLLK------------PTSGSIIFDGKD 68 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEE
Confidence 34667788775 258899999998 99999999999999999999999986 55665 55655
Q ss_pred eeeeCH---HHHHHHh---hccc---hhhhheeccc------ccC--ccH---HHH-HHH----------HhcCCcEEEE
Q 043263 140 YFFVSK---EEFLQMV---DKNE---LLEYALVYGD------YKG--IPK---KQI-REY----------MAKGYDIVLR 188 (286)
Q Consensus 140 ~~~~~~---~~~~~~i---~~~~---~~~~~~~~~~------~~~--~~~---~~i-~~~----------~~~g~~~v~~ 188 (286)
+...+. ..++..+ .+.. +........+ .++ ... +.. .+. +......+++
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 148 (228)
T cd03257 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSG 148 (228)
T ss_pred ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCH
Confidence 433221 1111111 1111 1111111111 000 000 110 111 1222344667
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
|++|++.+|++++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|+++.. ...||+|+++++|
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G 222 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV------AKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEeCC
Confidence 899999999999988888887 77776777777766532 34667779988864 3579999999998
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 223 ~i 224 (228)
T cd03257 223 KI 224 (228)
T ss_pred EE
Confidence 75
No 160
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=134.21 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=111.1
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++++...-++ +|+++++.+.+ |+.++|+|||||||||++|+++.+.. |++|. +.|+++....
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~-Ge~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~ 71 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRA-GEFIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLK 71 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecC-CceEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccC
Confidence 45555544444 78999999998 99999999999999999999999986 88888 7899999999
Q ss_pred HHHHHHHh----hccch----hhhheeccccc---CccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 145 KEEFLQMV----DKNEL----LEYALVYGDYK---GIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 145 ~~~~~~~i----~~~~~----~~~~~~~~~~~---~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
++.++..+ ++..+ ++++..+++.. ..+.+...+. +.+....++||++|+++++|.+.--
T Consensus 72 pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 72 PEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred hHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcC
Confidence 99888765 33332 34444444321 1222222221 3334456789999999999999744
Q ss_pred CcEEEE------EecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 204 SAVFVF------LAAESEMALVERLVERKT---ENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|.++++ ||+.+...+.+-|...-. ....-|+|.-+.+ .+.||+++-...|.+.
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa------~rha~k~itl~~G~~~ 213 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA------IRHADKVITLQPGHAG 213 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH------hhhhheEEEeccCccc
Confidence 554444 444433333222221110 0111224433332 5788988887777553
No 161
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.77 E-value=7.5e-20 Score=157.14 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=114.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKP-GEVVAIIGPSGSGKTTLLRCINLLEQ------------PEAGTIRVGDITIDTA 70 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEcccc
Confidence 567888988875 78999999998 99999999999999999999999986 55555 455544321
Q ss_pred C--------HHHHHHHh---hcc-------chhhhheeccc-ccCccH----HHHHHHH---------hcCCcEEEEeCH
Q 043263 144 S--------KEEFLQMV---DKN-------ELLEYALVYGD-YKGIPK----KQIREYM---------AKGYDIVLRVDI 191 (286)
Q Consensus 144 ~--------~~~~~~~i---~~~-------~~~~~~~~~~~-~~~~~~----~~i~~~~---------~~g~~~v~~~~~ 191 (286)
. ...++..+ .+. ...++...... ..+... +.+.+.+ ......+++|++
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 71 RSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred ccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 1 11111111 111 11222111000 011111 1122221 223345778999
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~------~~~~d~i~~l~~G~i 222 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA------RDVADRAIFMDQGRI 222 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence 999999999988888888 7777777777766543 234666778988764 367999999988865
No 162
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.8e-20 Score=156.68 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=114.2
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.+
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~ 72 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGE-GEMMAIVGSSGSGKSTLLHLLGGLDT------------PTSGDVIFNGQP 72 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence 667888888852 68999999998 99999999999999999999999986 56665 56665
Q ss_pred eeeeCHHHH---H-HHh---hcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHH
Q 043263 140 YFFVSKEEF---L-QMV---DKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~---~-~~i---~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q 192 (286)
+...+.... + ..+ .+. ...++..+.....+... +.+.+.+ ......+++|++|
T Consensus 73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152 (233)
T ss_pred cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 543333221 1 111 111 11222111000111111 1222222 2233456678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..+|+++++++|++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~-------~~~~~~~~l~~G~i 223 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA-------KRMSRQLEMRDGRL 223 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-------HhhCEEEEEECCEE
Confidence 99999999988888888 7777777777766653 244677789988773 44578888888875
No 163
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.77 E-value=1.1e-19 Score=162.96 Aligned_cols=181 Identities=20% Similarity=0.222 Sum_probs=127.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++++++.|++ +.+++++.+.+ |+|.+|+|.||+|||||+++|.|+|. |++|+ ++|+.+.+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~-GeIHaLLGENGAGKSTLm~iL~G~~~------------P~~GeI~v~G~~v~~ 70 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKK-GEIHALLGENGAGKSTLMKILFGLYQ------------PDSGEIRVDGKEVRI 70 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecC-CcEEEEeccCCCCHHHHHHHHhCccc------------CCcceEEECCEEecc
Confidence 3677899999998 78999999998 99999999999999999999999997 99998 89999988
Q ss_pred eCHHHHHHH----h-hccchhhhheeccccc---------CccHH----HHHHHHhc-C--------CcEEEEeCHHHHH
Q 043263 143 VSKEEFLQM----V-DKNELLEYALVYGDYK---------GIPKK----QIREYMAK-G--------YDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~~~~~----i-~~~~~~~~~~~~~~~~---------~~~~~----~i~~~~~~-g--------~~~v~~~~~q~v~ 195 (286)
.++.+.... + +.-.++++.++..|+. ..... .+.+..+. | -..+.-|+.||+.
T Consensus 71 ~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 71 KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence 777654432 2 2223344444433321 11222 22222111 1 1123347889999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVK 266 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~ 266 (286)
|++++++++.++|| |.|...+.+.+.++. ..+.++..|+|++... ...||++-|+..|++..+++
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev------~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV------MAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH------HHhhCeeEEEeCCeEEeeec
Confidence 99999988888888 444334455555443 2345889999999997 48899999999997644444
No 164
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=6.1e-20 Score=158.33 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=113.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------p~~G~i~~~g~~~~~~ 69 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRP-GEVVAILGPNGAGKSTLLRALSGELS------------PDSGEVRLNGRPLADW 69 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEEcccC
Confidence 456788888875 79999999998 99999999999999999999999986 56665 556554332
Q ss_pred CHHHHHHHh----hccc------hhhhheecccccCc----cHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263 144 SKEEFLQMV----DKNE------LLEYALVYGDYKGI----PKKQIREYM---------AKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 144 ~~~~~~~~i----~~~~------~~~~~~~~~~~~~~----~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral 200 (286)
+...+...+ ++.. ..++.......... ..+.+.+++ ......+++|++|++.+|+++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 70 SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 322222211 1111 12221111111111 111222222 223345667899999999999
Q ss_pred h------CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 L------GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~------~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+ .+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 219 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA------ARYADRIVLLHQGRL 219 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhcCEEEEEECCEE
Confidence 9 47777777 7777666666666542 234667778988764 368999999988865
No 165
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6e-20 Score=159.66 Aligned_cols=174 Identities=19% Similarity=0.173 Sum_probs=113.0
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.|+. ++.++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 68 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKK-GEYIGIIGKNGSGKSTLALHLNGLLR------------PQKGKVLVSGIDTGD 68 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEECCc
Confidence 346788888842 79999999998 99999999999999999999999986 55665 55554432
Q ss_pred eC-HHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 143 VS-KEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 143 ~~-~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
.+ ...+...+ .+. ...++..+....++... +.+.+. .......+++|+.|++.+|
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 69 FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHH
Confidence 21 11222111 111 11222211111111221 112222 2223345667899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-------~~~d~v~~l~~G~i 213 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-------HDADRIIVMDRGKI 213 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-------hhCCEEEEEECCEE
Confidence 999988888888 7777777777766543 244777779988873 46999999988764
No 166
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.77 E-value=6.4e-20 Score=158.08 Aligned_cols=175 Identities=17% Similarity=0.205 Sum_probs=116.5
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~ 68 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPP-GSLTGLLGPNGSGKSTLLRLLAGALR------------PDAGTVDLAGVDLHGL 68 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCEEcccC
Confidence 456788888875 79999999998 99999999999999999999999986 66665 666655433
Q ss_pred CHHHHHHHh---hcc-------chhhhheecc----cccCc----cHHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 144 SKEEFLQMV---DKN-------ELLEYALVYG----DYKGI----PKKQIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~~~~~~i---~~~-------~~~~~~~~~~----~~~~~----~~~~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
+....+..+ .+. ...++..... ..+.. ..+.+.+. .......+.+|++|++.+
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 69 SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 333322211 111 1122221110 00010 11122222 222334566789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLA------ASYCDHVVVLDGGRV 215 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCCE
Confidence 9999988888888 77777777777666532 34667778988874 378999999988875
No 167
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=7e-20 Score=159.92 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=114.9
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC---CC--cCC
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP---GE--VNG 137 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~---G~--~~g 137 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.. |+ ++|
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~-Ge~~~I~G~nGaGKSTLl~~l~G~~~------------p~~g~~G~i~i~g 71 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPR-GSWTALIGHNGSGKSTISKLINGLLL------------PDDNPNSKITVDG 71 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcccC------------CCCCCCcEEEECC
Confidence 3677888988853 68999999998 99999999999999999999999986 443 44 556
Q ss_pred cceeeeCHHHHHHHh---hcc--------chhhhheecccccCccHHH----HHHH---------HhcCCcEEEEeCHHH
Q 043263 138 KDYFFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKKQ----IREY---------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~~----i~~~---------~~~g~~~v~~~~~q~ 193 (286)
.++.......++..+ .+. ...++..+....++...+. +.++ +......+++|++|+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 72 ITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred EECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence 554322222222211 111 1222221110111222211 2222 233344567789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|.++.. ..||+++++++|++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-------~~~d~i~~l~~G~i 221 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-------NMADQVLVLDDGKL 221 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-------HhCCEEEEEECCEE
Confidence 9999999988888888 77777777777776532 34667778988763 46999999988865
No 168
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.6e-20 Score=158.88 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=115.5
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~ 69 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPT-GKITALIGPNGCGKSTLLKCFARLLT------------PQSGTVFLGDKPISML 69 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCCcEEEECCEEhHHC
Confidence 456788888875 78999999998 99999999999999999999999986 55555 555543222
Q ss_pred CHHHHHHHh----hcc------chhhhheecc----cccC----ccHHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 144 SKEEFLQMV----DKN------ELLEYALVYG----DYKG----IPKKQIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~~~~~~i----~~~------~~~~~~~~~~----~~~~----~~~~~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
+...+...+ ++. ...++..+.. ..++ ...+.+.++ .......+++|++|++.+
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 70 SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred CHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHH
Confidence 222222211 111 1111111100 0001 011122222 233445677899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i 216 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQA------SRYCDHLVVLANGHV 216 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH------HHhcCEEEEEECCeE
Confidence 9999989988888 7777777777776653 234667778988874 368999999988865
No 169
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.76 E-value=5.6e-20 Score=163.50 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=117.7
Q ss_pred HHHhHhHHHHhc---------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC
Q 043263 67 IELLRSLEASLG---------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR 131 (286)
Q Consensus 67 ~i~~~~v~~~~~---------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~ 131 (286)
.++++||++.|+ .+++++++.+.+ |++++|+|+||||||||+++|+|++. |.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTLlk~i~Gl~~------------p~ 74 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE-GETLGVVGESGCGKSTFARAIIGLVK------------AT 74 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCC------------CC
Confidence 366777777774 157889999998 99999999999999999999999986 66
Q ss_pred CCC--cCCcceeeeCHHHHHH---H---hhccc---hhhhheecccc------c--CccHHH----HHHH----------
Q 043263 132 PGE--VNGKDYFFVSKEEFLQ---M---VDKNE---LLEYALVYGDY------K--GIPKKQ----IREY---------- 178 (286)
Q Consensus 132 ~G~--~~g~~~~~~~~~~~~~---~---i~~~~---~~~~~~~~~~~------~--~~~~~~----i~~~---------- 178 (286)
+|+ ++|.++...+...+.. . +.|+. +.....+..++ + ....+. +.+.
T Consensus 75 ~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~ 154 (331)
T PRK15079 75 DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL 154 (331)
T ss_pred CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH
Confidence 666 6777665444433221 1 12221 11111111110 0 122211 1111
Q ss_pred HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCC
Q 043263 179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~ 249 (286)
+......+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~------~~~ 228 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV------KHI 228 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHh
Confidence 2333356778999999999999988888888 7777677776666542 244778889999885 367
Q ss_pred CcEEEECCCCCH
Q 043263 250 FDYVVVNAEGKL 261 (286)
Q Consensus 250 ~d~viv~~~G~i 261 (286)
||+|+++.+|++
T Consensus 229 ~dri~vl~~G~i 240 (331)
T PRK15079 229 SDRVLVMYLGHA 240 (331)
T ss_pred CCEEEEEECCEE
Confidence 999999988875
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.4e-20 Score=158.44 Aligned_cols=175 Identities=15% Similarity=0.223 Sum_probs=115.4
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.+.++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPK-GQWTSIVGHNGSGKSTIAKLMIGIEK------------VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEC
Confidence 4678899999963 68999999998 99999999999999999999999986 55565 566554
Q ss_pred eeeCHHHHHHHh---hccc--hh-----hhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 141 FFVSKEEFLQMV---DKNE--LL-----EYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~--~~-----~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
...+...++..+ .+.. ++ .++..+. ...+... +.+.++ .......+++|++|++.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAI 153 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHH
Confidence 333332222221 1111 11 1111111 0011111 112222 222334566789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~-------~~~d~i~~l~~G~i 220 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA-------MEADHVIVMNKGTV 220 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH-------hcCCEEEEEECCEE
Confidence 9999988888888 7777777777766653 234667778988764 35999999988875
No 171
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.5e-20 Score=161.94 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=111.7
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY 140 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~ 140 (286)
+.++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|+++...+.+. ++|.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~-Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~----------~~g~~~ 71 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQ-GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE----------WIFKDE 71 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE----------Eeceec
Confidence 456788888852 68899999998 999999999999999999999999873333322 333221
Q ss_pred ee------------------------eCHHHHHHHh---hcc---ch-----hhhheecccccCccHHH----HHHH---
Q 043263 141 FF------------------------VSKEEFLQMV---DKN---EL-----LEYALVYGDYKGIPKKQ----IREY--- 178 (286)
Q Consensus 141 ~~------------------------~~~~~~~~~i---~~~---~~-----~~~~~~~~~~~~~~~~~----i~~~--- 178 (286)
.. .....++..+ .++ .+ .++..+....++...+. +.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 00 0111122111 111 11 12211111111222221 2222
Q ss_pred -------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 043263 179 -------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREE 243 (286)
Q Consensus 179 -------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~ 243 (286)
.......+++|++|++++|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++..
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~--- 228 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV--- 228 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH---
Confidence 2223345667899999999999988888888 7777676776666542 244777889998865
Q ss_pred hhccCCCcEEEECCCCCH
Q 043263 244 VQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 244 ~~~~~~~d~viv~~~G~i 261 (286)
...||+|+++++|++
T Consensus 229 ---~~~adrv~vl~~G~i 243 (305)
T PRK13651 229 ---LEWTKRTIFFKDGKI 243 (305)
T ss_pred ---HHhCCEEEEEECCEE
Confidence 478999999998864
No 172
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.8e-20 Score=159.70 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=117.0
Q ss_pred HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.++++|+++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++.
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~i~Gl~~------------p~~G~i~i~g~~~~ 71 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKK-GEVTAILGGNGAGKSTLFQNLNGILK------------PSSGRILFDGKPID 71 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCccEEEECCEECC
Confidence 467889999995 3 79999999998 99999999999999999999999986 56665 6666542
Q ss_pred e--eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHH
Q 043263 142 F--VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 142 ~--~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~ 195 (286)
. .....++..+ .+. ...++..+....++.+.+ .+.++ .......+++|++|++.
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH
Confidence 1 1112222221 111 111221110001122211 12222 22334556778999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+-|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~------~~~~dri~~l~~G~i 220 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV------PLYCDNVFVMKEGRV 220 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999988888888 7777676666655542 244777789998874 357999999988865
No 173
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.1e-20 Score=163.63 Aligned_cols=179 Identities=16% Similarity=0.095 Sum_probs=118.4
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|+++.. ..+..|+ ++|.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTL~~~l~Gll~~~--------~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQ-GEVVGIVGESGSGKSVSSLAIMGLIDYP--------GRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCC--------CCCcceEEEECCEE
Confidence 467788888853 68999999998 9999999999999999999999987410 0024555 67777
Q ss_pred eeeeCHHHHHHH-------hhccc---hhhhheecc-------cccCcc----HHHHHHHH------------hcCCcEE
Q 043263 140 YFFVSKEEFLQM-------VDKNE---LLEYALVYG-------DYKGIP----KKQIREYM------------AKGYDIV 186 (286)
Q Consensus 140 ~~~~~~~~~~~~-------i~~~~---~~~~~~~~~-------~~~~~~----~~~i~~~~------------~~g~~~v 186 (286)
+...+...+... +.|+. +.....+.. ...+.. .+.+.+++ ......+
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L 154 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL 154 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 655555444331 12221 110000000 001111 11222222 2333457
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++.
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~------~~~adri~vm~ 228 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV------AEAAHKIIVMY 228 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEE
Confidence 78999999999999989988888 7777777776666542 344778889999875 36899999999
Q ss_pred CCCH
Q 043263 258 EGKL 261 (286)
Q Consensus 258 ~G~i 261 (286)
+|++
T Consensus 229 ~G~i 232 (326)
T PRK11022 229 AGQV 232 (326)
T ss_pred CCEE
Confidence 8876
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.76 E-value=1.2e-19 Score=153.36 Aligned_cols=173 Identities=15% Similarity=0.086 Sum_probs=111.9
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++++++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.+....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~ 89 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPR-GERIGLIGRNGAGKSTLLRLLAGIYP------------PDSGTVTVRGRVSSLL 89 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEchhh
Confidence 788999999987 79999999998 99999999999999999999999986 55555 445432210
Q ss_pred CHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
... ..........++.......++... +.+.+. +......+++|++|++.+|++++.+|+++|+
T Consensus 90 ~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 90 GLG--GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred ccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000 000001111111111100111111 111111 1222345667899999999999988888877
Q ss_pred -----EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -----LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 220 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI------KRLCDRALVLEKGKI 220 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 7776666777766543 233667778887764 367999999998875
No 175
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.1e-20 Score=159.04 Aligned_cols=175 Identities=18% Similarity=0.179 Sum_probs=115.0
Q ss_pred HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.+.++|+++.|+ . .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINE-GEYVAILGHNGSGKSTISKILTGLLK------------PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEec
Confidence 367889999994 2 78999999998 99999999999999999999999986 55565 556554
Q ss_pred eeeCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
...+...++..+ .+. ...++........+...+ .+.+. +......+++|++|++.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHH
Confidence 322222222211 111 112222110000111111 11221 233445677899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. ++.+...++|+++.. ..||+++++++|++
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-------~~~d~v~~l~~G~i 220 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-------ILADKVIVFSEGKL 220 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH-------hhCCEEEEEECCEE
Confidence 9999988888888 7776677777766653 224666778987763 46999999988875
No 176
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=6.3e-20 Score=156.83 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=114.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++...
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDP-GELRVIIGPNGAGKTTMMDVITGKTR------------PDEGSVLFGGTDLTGL 69 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEECCeecCCC
Confidence 457788888875 69999999998 99999999999999999999999986 66665 566554332
Q ss_pred CHHHHHH-H---h-hcc------chhhhheecc--------cccCc----cHHHHHHHH---------hcCCcEEEEeCH
Q 043263 144 SKEEFLQ-M---V-DKN------ELLEYALVYG--------DYKGI----PKKQIREYM---------AKGYDIVLRVDI 191 (286)
Q Consensus 144 ~~~~~~~-~---i-~~~------~~~~~~~~~~--------~~~~~----~~~~i~~~~---------~~g~~~v~~~~~ 191 (286)
+...... . + ++. ...++..+.. ..++. ..+.+.+.+ ......+++|++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 70 PEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQK 149 (242)
T ss_pred CHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 2222111 0 1 111 1122211110 00001 111222222 222334667899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++++ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV------RSIADKVTVLHQGSV 220 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCeE
Confidence 999999999988888777 77777777777776532 33667778988874 367999999988875
No 177
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.2e-20 Score=158.07 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=116.2
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVRE-QEIVSLIGPNGAGKTTVFNCLTGFYK------------PTGGTILLRGQHIEG 71 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcC-CeEEEEECCCCCCHHHHHHHHhCCcC------------CCcceEEECCEECCC
Confidence 4678899999975 79999999998 99999999999999999999999986 55555 55554432
Q ss_pred eCHHHHHHH-----hhcc------chhhhheec----------ccccC------cc---HHHHHHH---------HhcCC
Q 043263 143 VSKEEFLQM-----VDKN------ELLEYALVY----------GDYKG------IP---KKQIREY---------MAKGY 183 (286)
Q Consensus 143 ~~~~~~~~~-----i~~~------~~~~~~~~~----------~~~~~------~~---~~~i~~~---------~~~g~ 183 (286)
.+....... .++. ...++..+. ...+. .. .+.+.+. .....
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (255)
T PRK11300 72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151 (255)
T ss_pred CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence 222211110 1111 111111110 00000 00 0112211 23334
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
..+++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~------~~~~d~i~ 225 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV------MGISDRIY 225 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH------HHhCCEEE
Confidence 45678899999999999989988888 8887777777766643 234677778988875 36799999
Q ss_pred ECCCCCH
Q 043263 255 VNAEGKL 261 (286)
Q Consensus 255 v~~~G~i 261 (286)
++++|++
T Consensus 226 ~l~~g~i 232 (255)
T PRK11300 226 VVNQGTP 232 (255)
T ss_pred EEECCeE
Confidence 9998875
No 178
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.76 E-value=1.3e-20 Score=162.06 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=111.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce--
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY-- 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~-- 140 (286)
.++++|+++.|+. .|+++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~-Ge~~~I~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~ 78 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPA-GQFVAVVGRSGCGKSTLLRLLAGLET------------PSAGELLAGTAPLAE 78 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEHHH
Confidence 4788999999975 78999999998 99999999999999999999999986 44444 333221
Q ss_pred -----eeeCHHHHHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263 141 -----FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 141 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~ 206 (286)
.++.+.. .........++..+ . .+....+.+.++ +......+++|++|++.+|++++.+|++
T Consensus 79 ~~~~i~~v~q~~--~l~~~~tv~enl~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 79 AREDTRLMFQDA--RLLPWKKVIDNVGL-G-LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred hhCceEEEecCc--cCCCCCcHHHHHHh-c-ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1111000 00000111111111 0 000011122222 2233355778999999999999988888
Q ss_pred EEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 207 FVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~------~~~~d~i~~l~~G~i 212 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA------VAMADRVLLIEEGKI 212 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 888 7777777776666542 234677789988864 367999999887765
No 179
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=6.6e-20 Score=153.05 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=116.9
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKA-GEKIGIVGRTGAGKSTLILALFRFLE------------AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCeEEECCEEh
Confidence 3667788888862 68899999998 99999999999999999999999986 66666 566654
Q ss_pred eeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHHh--cCCcEEEEeCHHHHHHHHHHhCCCcEEEE---
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYMA--KGYDIVLRVDIQGARTLRRILGDSAVFVF--- 209 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~~--~g~~~v~~~~~q~v~iaral~~~~~~~Il--- 209 (286)
...+...++..+ .+...+....+..++. ....+.+.+.+. .....+.+|+.|++.+||+++.+|+++|+
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 333333332221 1111111111111110 112233333332 33355677899999999999988888888
Q ss_pred ---EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 ---LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ---ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+.. +.+...++|+++.. ..||+++++++|++
T Consensus 153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~-------~~~d~v~~l~~g~i 201 (207)
T cd03369 153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTI-------IDYDKILVMDAGEV 201 (207)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCEE
Confidence 77776777777777642 34666778887763 34899999998875
No 180
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.8e-19 Score=154.00 Aligned_cols=175 Identities=9% Similarity=0.105 Sum_probs=113.9
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 70 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNS-GEIVGLLGPNGAGKTTTFYMVVGIVP------------RDAGNIIIDDEDISLL 70 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence 567888888875 78999999998 99999999999999999999999986 55565 556554332
Q ss_pred CHHH-HHHHh----hcc------chhhhheeccccc-CccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263 144 SKEE-FLQMV----DKN------ELLEYALVYGDYK-GIPK----KQIREYM---------AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 144 ~~~~-~~~~i----~~~------~~~~~~~~~~~~~-~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iar 198 (286)
+... .+..+ +.. ...++........ .... ..+.+.+ ......+++|+.|++.+|+
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 71 PLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred CHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence 2211 11111 111 1122221111111 0111 1122221 2223456788999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.+.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~------~~~~d~v~~l~~G~i 215 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET------LAVCERAYIVSQGHL 215 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhcCEEEEEeCCeE
Confidence 99988888877 7776676666666542 234667778988764 478999999998875
No 181
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.2e-20 Score=162.65 Aligned_cols=176 Identities=17% Similarity=0.098 Sum_probs=117.0
Q ss_pred HHhHhHHHHhc------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263 68 ELLRSLEASLG------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE- 134 (286)
Q Consensus 68 i~~~~v~~~~~------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~- 134 (286)
++++||++.|+ .+++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+
T Consensus 6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~IvG~sGsGKSTLl~~l~gl~~------------p~~G~i 72 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER-GKTLAVVGESGCGKSTLARLLTMIET------------PTGGEL 72 (327)
T ss_pred EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHHcCCC------------CCCcEE
Confidence 56777787774 168899999998 99999999999999999999999986 55665
Q ss_pred -cCCcceeeeCHHHHHH---H---hhccc---hhhhheeccc------cc-CccH----HHHHHHH----------hcCC
Q 043263 135 -VNGKDYFFVSKEEFLQ---M---VDKNE---LLEYALVYGD------YK-GIPK----KQIREYM----------AKGY 183 (286)
Q Consensus 135 -~~g~~~~~~~~~~~~~---~---i~~~~---~~~~~~~~~~------~~-~~~~----~~i~~~~----------~~g~ 183 (286)
++|.++...+..++.. . +.++. +.....+..+ .+ +... +.+.+.+ ....
T Consensus 73 ~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p 152 (327)
T PRK11308 73 YYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP 152 (327)
T ss_pred EECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC
Confidence 6676665444333221 1 12221 1000000000 00 1111 1122222 2233
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
..+++|++||+.+|++++.+|+++|+ ||..+...+.+.|.+. .+.+...++|++... ...||+|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~------~~~adrv~ 226 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV------EHIADEVM 226 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEE
Confidence 46778899999999999989888888 7777677777766542 244778889999885 36799999
Q ss_pred ECCCCCHH
Q 043263 255 VNAEGKLD 262 (286)
Q Consensus 255 v~~~G~i~ 262 (286)
++.+|++.
T Consensus 227 vm~~G~iv 234 (327)
T PRK11308 227 VMYLGRCV 234 (327)
T ss_pred EEECCEEE
Confidence 99988763
No 182
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6e-20 Score=158.05 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=107.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee--
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-- 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-- 141 (286)
++++|+++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~ 68 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLES-GELLVVLGPSGCGKTTLLNLIAGFVP------------YQHGSITLDGKPVEGP 68 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence 356788888865 68999999998 99999999999999999999999986 44444 3443321
Q ss_pred -----eeCHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 142 -----FVSKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
++.+.. .........++........+... +.+.+. .......+++|++|++.+|++++.+
T Consensus 69 ~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 69 GAERGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCcEEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111000 00011111222111000011111 112222 2223345778999999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|++++
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~------~~~~d~i~~l~ 203 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA------VFMATELVLLS 203 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEe
Confidence 888888 7777777777766653 244677779988865 36799998886
No 183
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=1e-19 Score=155.29 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=113.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 68 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQ-GEVVVIIGPSGSGKSTLLRCINKLEE------------ITSGDLIVDGLKVNDP 68 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCcC
Confidence 346778888864 68999999998 99999999999999999999999986 55555 556544321
Q ss_pred C--HHHHHHHh----hcc------chhhhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 144 S--KEEFLQMV----DKN------ELLEYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 144 ~--~~~~~~~i----~~~------~~~~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
. ...++..+ ++. ...++..+.. ...+... +.+.++ +......+++|++|++.+|
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 69 KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 1 11111111 111 1111111100 0011111 112222 2233345677899999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA------EKVASRLIFIDKGRIA 215 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence 999988888887 7777677777766543 234667778988874 3679999999988763
No 184
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=1.6e-19 Score=152.31 Aligned_cols=172 Identities=14% Similarity=0.217 Sum_probs=112.3
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKP-GEKVGIVGRTGSGKSSLLLALFRLVE------------LSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCCEEEECCEEhH
Confidence 456788888852 78999999998 99999999999999999999999986 55565 4555443
Q ss_pred eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHHH---------HHh-----------cCCcEEEEeCHH
Q 043263 142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIRE---------YMA-----------KGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~---------~~~-----------~g~~~v~~~~~q 192 (286)
..+...++..+ .+. ...++...+.. ...+.+.+ .+. .....+.+|++|
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred hCCHHHHhhhEEEECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 22222222211 111 11222211111 11111111 111 233456678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++.++++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ..||+++++++|++.
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~~~ 216 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI-------IDSDRILVLDKGRVV 216 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCeEE
Confidence 99999999988888887 77777777777776542 23556668887763 458999999988763
No 185
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-19 Score=155.10 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=115.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++... .|..|+ ++|+++...
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQ-NKITALIGASGCGKSTFLRCFNRMNDKI---------AKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCC---------CCCceEEEECCEecccC
Confidence 567889999975 79999999998 9999999999999999999999986310 034555 566655433
Q ss_pred CHHHHHHHh---hcc------chhhhheecccccCc------cHHHHHHHH-------------hcCCcEEEEeCHHHHH
Q 043263 144 SKEEFLQMV---DKN------ELLEYALVYGDYKGI------PKKQIREYM-------------AKGYDIVLRVDIQGAR 195 (286)
Q Consensus 144 ~~~~~~~~i---~~~------~~~~~~~~~~~~~~~------~~~~i~~~~-------------~~g~~~v~~~~~q~v~ 195 (286)
+...++..+ .+. ...++..+....++. ..+.+.+.+ ......+.+|++|+++
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH
Confidence 322322211 111 112221111111110 011112221 2223456778999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i 219 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG------KRVADYTAFFHLGEL 219 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HhhCcEEEEEECCEE
Confidence 99999988888888 7776677777766653 234667778988875 468999999998875
No 186
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.75 E-value=9.3e-20 Score=157.16 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=116.4
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
+.++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~ 70 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSEGSIVVNGQTIN 70 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcc
Confidence 45788999999975 79999999998 99999999999999999999999986 55555 5555432
Q ss_pred ee----------C---HHHHHHHh----hccc------hhhhheecc-cccCccH----HHHHHHH----------hcCC
Q 043263 142 FV----------S---KEEFLQMV----DKNE------LLEYALVYG-DYKGIPK----KQIREYM----------AKGY 183 (286)
Q Consensus 142 ~~----------~---~~~~~~~i----~~~~------~~~~~~~~~-~~~~~~~----~~i~~~~----------~~g~ 183 (286)
.. + ...++..+ ++.. ..++..+.. ..+.... +.+.+.+ ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 150 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP 150 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 10 1 11222211 1111 122211100 0011111 1222221 2233
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVV 255 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv 255 (286)
..+++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~------~~~~d~i~~ 224 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA------RHVSSHVIF 224 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEE
Confidence 45667899999999999988888888 7777777777766543 234677778988874 357999999
Q ss_pred CCCCCH
Q 043263 256 NAEGKL 261 (286)
Q Consensus 256 ~~~G~i 261 (286)
+++|++
T Consensus 225 l~~G~i 230 (257)
T PRK10619 225 LHQGKI 230 (257)
T ss_pred EECCEE
Confidence 998865
No 187
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.6e-19 Score=157.47 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=115.1
Q ss_pred HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
++++|++++|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~i~g 71 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKK-GEFLVILGRNGSGKSTIAKHMNALLI------------PSEGKVYVDG 71 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECC
Confidence 567888898852 78999999998 99999999999999999999999987 55555 555
Q ss_pred cceeeeC-HHHHHHHh---hccc---h----hhhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHH
Q 043263 138 KDYFFVS-KEEFLQMV---DKNE---L----LEYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 138 ~~~~~~~-~~~~~~~i---~~~~---~----~~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q 192 (286)
.++.... ...++..+ .+.. + +.+...++ ...+... +.+.++ .......+++|++|
T Consensus 72 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 151 (280)
T PRK13633 72 LDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ 151 (280)
T ss_pred EeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 5442211 11112111 1111 1 11111111 1112221 122222 23334566788999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+++++++|++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~-------~~~d~v~~l~~G~i 222 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-------VEADRIIVMDSGKV 222 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH-------hcCCEEEEEECCEE
Confidence 99999999988888888 7887777777777653 244677779988874 34999999988865
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-19 Score=158.22 Aligned_cols=174 Identities=13% Similarity=0.116 Sum_probs=114.7
Q ss_pred HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~i 71 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITK-GEWVSIIGQNGSGKSTTARLIDGLFE------------EFEGKVKIDGELL 71 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCCEEEECCEEC
Confidence 567888888862 68999999998 99999999999999999999999987 55565 556554
Q ss_pred eeeCHHHHHHHh---hcc--------chhhhheecccccCccHHH----HHHH---------HhcCCcEEEEeCHHHHHH
Q 043263 141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKKQ----IREY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~~----i~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
...+...++..+ .+. ...++..+.....+...+. +..+ .......+++|+.|++.+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAV 151 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 322222222211 111 1122221100001112111 1222 223334567789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~-------~~~d~i~~l~~G~i 218 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-------ASSDRILVMKAGEI 218 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence 9999988888888 7777677777766543 244777789988884 46999999998865
No 189
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=8.4e-20 Score=143.61 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=99.8
Q ss_pred hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++|+++.|+. .++++++.+.+ |++++|+|+|||||||++++|+|+++ |..|+ ++|....
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~~~~~i---- 65 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINP-GDRIGLVGRNGAGKSTLLKLIAGELE------------PDEGIVTWGSTVKI---- 65 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCceEEEECCeEEE----
Confidence 4567777764 68888999888 99999999999999999999999986 66665 3442000
Q ss_pred HHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHH
Q 043263 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALV 219 (286)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~ 219 (286)
.++. . +.+|+.|++.+||+++.+|+++|+ ||+.+...+.
T Consensus 66 ----------~~~~---------~----------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~ 110 (144)
T cd03221 66 ----------GYFE---------Q----------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110 (144)
T ss_pred ----------EEEc---------c----------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 0000 0 677899999999999988888888 7776677777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 220 ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 220 ~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
+.+.+.. .+...++|+++.. ...||+++++++|+
T Consensus 111 ~~l~~~~-~til~~th~~~~~------~~~~d~v~~l~~g~ 144 (144)
T cd03221 111 EALKEYP-GTVILVSHDRYFL------DQVATKIIELEDGK 144 (144)
T ss_pred HHHHHcC-CEEEEEECCHHHH------HHhCCEEEEEeCCC
Confidence 7776653 3666778887764 36799999998874
No 190
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=8.6e-20 Score=159.73 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=112.9
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
+.++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~iiG~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 69 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEE-GSFVALVGHTGSGKSTLMQHFNALLK------------PSSGTITIAGY 69 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 456788888862 68999999998 99999999999999999999999987 55665 5665
Q ss_pred ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH----------HhcCCcEEEEe
Q 043263 139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY----------MAKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~----------~~~g~~~v~~~ 189 (286)
++... +....+..+ .+. ...++..+....+....+ .+.++ .......+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (287)
T PRK13641 70 HITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGG 149 (287)
T ss_pred ECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHH
Confidence 54221 111111111 111 111211110001111111 12222 12233456788
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~------~~~~d~v~~l~~G~i 223 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDV------AEYADDVLVLEHGKL 223 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99999999999988888877 7776666776666653 234667779988875 368999999988864
No 191
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.75 E-value=1.5e-19 Score=152.38 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=111.9
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+.+ |..|+ ++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRA-GEKVAIIGRVGSGKSTLLKLLAGLYK------------PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCeEEECCEEhH
Confidence 456778888853 68899999998 99999999999999999999999976 55565 4555432
Q ss_pred eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHHHH---------Hhc-----------CCcEEEEeCHH
Q 043263 142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIREY---------MAK-----------GYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~-----------g~~~v~~~~~q 192 (286)
..+...++..+ .+. ...++....... ...+.+.+. +.. ....+++|++|
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 22222222211 111 112221111000 111111111 111 11357788999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+... .+...++|+++. ...||+++++++|++
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-------~~~~d~v~~l~~g~i 216 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL-------LDLVDRIIVMDSGRI 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-------HHhCCEEEEEeCCeE
Confidence 99999999988888888 777777788787776432 355666887765 357999999998875
No 192
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.75 E-value=3.3e-20 Score=156.63 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=109.1
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF----- 141 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~----- 141 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+. ++|.++.
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----------~~~~~~~~~~~~ 70 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPK-NSVYGLLGPNGAGKSTLLKMITGILRPTSGEII----------FDGHPWTRKDLH 70 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEeccccccc
Confidence 35677777764 68889999888 999999999999999999999999873333332 3333211
Q ss_pred ---eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263 142 ---FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209 (286)
Q Consensus 142 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il 209 (286)
+..... .........++.......++...+.+.+. .......+++|+.|++.+|++++.+|+++++
T Consensus 71 ~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll 148 (223)
T TIGR03740 71 KIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL 148 (223)
T ss_pred cEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 110000 00000111111111000111112222222 1222344677899999999999988888888
Q ss_pred ------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 ------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+.+.+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 149 DEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV------QQLADHIGIISEGVL 202 (223)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HHhcCEEEEEeCCEE
Confidence 88877777777766532 33667778988874 368999999988875
No 193
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.75 E-value=1.4e-19 Score=155.11 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=112.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC-----CCC--cCCc
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR-----PGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~-----~G~--~~g~ 138 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |. .|+ ++|.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPK-NQVTALIGPSGCGKSTLLRSLNRMND------------LVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCcCCCCceEEEECCE
Confidence 356788888875 78999999998 99999999999999999999999986 43 555 5565
Q ss_pred ceeee--CHHHHHHHh---hcc------chhhhheecccccC-ccH----HHHHHH-------------HhcCCcEEEEe
Q 043263 139 DYFFV--SKEEFLQMV---DKN------ELLEYALVYGDYKG-IPK----KQIREY-------------MAKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~-~~~----~~i~~~-------------~~~g~~~v~~~ 189 (286)
++... ....++..+ .+. ...++..+.....+ ... +.+.++ +......+++|
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 44321 111112111 111 11122111000111 111 111211 22233456778
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQA------ARISDRTAFFYDGEL 221 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999999999988887777 66666667766666532 23667779988874 368999999998875
No 194
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.5e-19 Score=153.22 Aligned_cols=173 Identities=20% Similarity=0.282 Sum_probs=113.3
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~ 69 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKP-GETVAIVGPTGAGKTTLINLLMRFYD------------PQKGQILIDGIDIRD 69 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCEeHHH
Confidence 456788888852 68899999998 99999999999999999999999986 55665 55554432
Q ss_pred eCHHHHHHHh---hcc------chhhhheecccccCccHHHHHH---------HH-----------hcCCcEEEEeCHHH
Q 043263 143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIRE---------YM-----------AKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~---------~~-----------~~g~~~v~~~~~q~ 193 (286)
.+...++..+ .+. ...++....... .....+.. .+ ......+.+|++|+
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 70 ISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred cCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 2222222211 111 122222111110 11111111 11 11224567789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+.+|++++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|.+... ..||+++++++|++.
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~~~ 216 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-------KNADKILVLDDGKII 216 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-------hhCCEEEEEeCCeEE
Confidence 9999999988888888 77777777777776542 33666678877663 459999999999763
No 195
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=7e-19 Score=148.07 Aligned_cols=153 Identities=23% Similarity=0.191 Sum_probs=111.3
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhccch
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDKNEL 157 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~~~~ 157 (286)
+++++++.+.+ |+++||+|.|||||||+.++|.+++. |+.|+ ++|.++..++.++....+. .+
T Consensus 28 avd~Vsf~i~~-ge~~glVGESG~GKSTlgr~i~~L~~------------pt~G~i~f~g~~i~~~~~~~~~~~v~--el 92 (268)
T COG4608 28 AVDGVSFSIKE-GETLGLVGESGCGKSTLGRLILGLEE------------PTSGEILFEGKDITKLSKEERRERVL--EL 92 (268)
T ss_pred EecceeEEEcC-CCEEEEEecCCCCHHHHHHHHHcCcC------------CCCceEEEcCcchhhcchhHHHHHHH--HH
Confidence 56777888887 99999999999999999999999987 78887 7888876665433222210 01
Q ss_pred hhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHH---HHhcCC
Q 043263 158 LEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERL---VERKTE 228 (286)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~ 228 (286)
++ .. +... +.+.+-..-++|||+||+.+||++..+|.++|+ ||......+..-| ++..+.
T Consensus 93 L~---~V----gl~~----~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l 161 (268)
T COG4608 93 LE---KV----GLPE----EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL 161 (268)
T ss_pred HH---Hh----CCCH----HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence 11 11 1111 123344466889999999999999989999988 7776555555444 344455
Q ss_pred CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 229 NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 229 t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
+...|+|+++.. ...||+|.|+..|++.|.
T Consensus 162 t~lFIsHDL~vv------~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 162 TYLFISHDLSVV------RYISDRIAVMYLGKIVEI 191 (268)
T ss_pred eEEEEEEEHHhh------hhhcccEEEEecCceeEe
Confidence 788889999986 478999999999987553
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.4e-19 Score=158.04 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=111.5
Q ss_pred HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
+.++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |.+|+ ++|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~ 69 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIED-GSYTAFIGHTGSGKSTIMQLLNGLHV------------PTQGSVRVDDT 69 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence 446777777752 68888999988 99999999999999999999999986 55555 5555
Q ss_pred ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263 139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV 189 (286)
Q Consensus 139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~ 189 (286)
++... ....++..+ .+. ...++..+....++...+ .+.+++ ......+++|
T Consensus 70 ~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (280)
T PRK13649 70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG 149 (280)
T ss_pred EccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 43221 111222111 111 112221111011111111 112221 2222346678
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i 223 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV------ANYADFVYVLEKGKL 223 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH------HHhCCEEEEEECCEE
Confidence 99999999999988888888 7777677777766653 234667779988764 367999999988865
No 197
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-19 Score=155.11 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=112.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 69 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQ-GETLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS 69 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEecccc
Confidence 456788888864 78999999998 99999999999999999999999986 55665 566554210
Q ss_pred ------CHHHHHHHh----hccc------hhhhheec-ccccCccH----HHHHHH---------HhcCCcEEEEeCHHH
Q 043263 144 ------SKEEFLQMV----DKNE------LLEYALVY-GDYKGIPK----KQIREY---------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 144 ------~~~~~~~~i----~~~~------~~~~~~~~-~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~ 193 (286)
.....+..+ ++.. ..++.... ....+... +.+.+. +......+++|++|+
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 149 (242)
T PRK11124 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQR 149 (242)
T ss_pred cccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 011111111 1111 11111110 00011111 112222 222334566789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~g~i 219 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA------RKTASRVVYMENGHI 219 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence 9999999988888887 7776677777766642 234667778988774 357999999988865
No 198
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.5e-20 Score=155.27 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=113.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~ 72 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQ-GEIVTLIGANGAGKTTLLGTLCGDPR------------ATSGRIVFDGKDITDW 72 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCceEEECCEecCCC
Confidence 667888998875 79999999998 99999999999999999999999986 55565 556554333
Q ss_pred CHHH-HHHHh----hcc------chhhhheecccccC--ccHHHHHH----------HHhcCCcEEEEeCHHHHHHHHHH
Q 043263 144 SKEE-FLQMV----DKN------ELLEYALVYGDYKG--IPKKQIRE----------YMAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 144 ~~~~-~~~~i----~~~------~~~~~~~~~~~~~~--~~~~~i~~----------~~~~g~~~v~~~~~q~v~iaral 200 (286)
+... .+..+ ++. ...++......... ...+.+.+ ........+++|++|++.+|+++
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 73 QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred CHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 3221 11111 111 11111111000000 00111111 11223345678899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 215 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA------LKLADRGYVLENGHV 215 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH------HhhCCEEEEEeCCEE
Confidence 988888888 7777677776666542 234667778988764 478999999988865
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3e-19 Score=151.88 Aligned_cols=172 Identities=18% Similarity=0.245 Sum_probs=111.3
Q ss_pred HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++|+++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPA-GETVALVGPSGSGKSTLVNLIPRFYD------------VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccc------------CCCCEEEECCEEhhh
Confidence 34566666642 57888888887 99999999999999999999999986 66666 56655433
Q ss_pred eCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------HHH-----------hcCCcEEEEeCHHH
Q 043263 143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------EYM-----------AKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~~~-----------~~g~~~v~~~~~q~ 193 (286)
.+...++..+ .+. ...++....... .....+. +.+ ......+.+|++|+
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred CCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 3333322221 111 112222111110 1111111 111 11223566789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ..||+|+++++|++.
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~v~~l~~G~i~ 215 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-------ENADRIVVLEDGKIV 215 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-------hhCCEEEEecCCeEe
Confidence 9999999988888888 77777777777776542 33566678888763 449999999999763
No 200
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.3e-19 Score=154.10 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=114.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPD-NTITALMGPSGSGKSTLLRVFNRLIELYPE-------ARVSGEVYLDGQDIFKM 75 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCC-------CCCceEEEECCEECCcC
Confidence 567888888875 78999999998 999999999999999999999998741000 013454 455544322
Q ss_pred CHHHHHHHh---hcc-------chhhhheecccccCc--c----HHHHHHHH-------------hcCCcEEEEeCHHHH
Q 043263 144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGI--P----KKQIREYM-------------AKGYDIVLRVDIQGA 194 (286)
Q Consensus 144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~--~----~~~i~~~~-------------~~g~~~v~~~~~q~v 194 (286)
+...++..+ .+. ...++..+....... . .+.+.+++ ......+++|++|++
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 222222211 111 112221110000000 1 11122222 222345667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 223 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA------ARISDYVAFLYKGQI 223 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCeE
Confidence 999999988888888 78777777777776532 34666778988874 367999999998876
No 201
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.8e-20 Score=156.97 Aligned_cols=180 Identities=18% Similarity=0.167 Sum_probs=113.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee--
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-- 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-- 141 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .+..|+ ++|.++.
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-------~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQ-NGVFALMGPSGCGKSTLLRTFNRLLELNEE-------ARVEGEVRLFGRNIYSP 76 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCcccC-------CCCceEEEECCEEcccc
Confidence 567888998875 79999999998 999999999999999999999998751100 012555 5565543
Q ss_pred eeCHHHHHHHh----hcc------chhhhheecccccCc--cH----HHHHHHHh-------------cCCcEEEEeCHH
Q 043263 142 FVSKEEFLQMV----DKN------ELLEYALVYGDYKGI--PK----KQIREYMA-------------KGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~--~~----~~i~~~~~-------------~g~~~v~~~~~q 192 (286)
..+...++..+ ++. ...++........+. .. +.+.++++ .....+++|++|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 11122222211 111 111221110000010 11 11222222 223346678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 226 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQA------ARVSDYVAFLYLGKL 226 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH------HhhCCEEEEEECCEE
Confidence 99999999988888888 77777777777766532 23667778988874 367999999998875
No 202
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.75 E-value=1.9e-19 Score=145.08 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=102.9
Q ss_pred HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc-ceee
Q 043263 69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK-DYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~-~~~~ 142 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|. .+.+
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~~~~~i~~ 68 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKP-GDRLLITGPSGTGKSSLFRALAGLWP------------WGSGRIGMPEGEDLLF 68 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCCceEEE
Confidence 35667777742 68899999998 99999999999999999999999986 55665 3331 1212
Q ss_pred eCHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM 216 (286)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~ 216 (286)
+.++.. +......++..+. ....+++|++|++.+||+++.+|+++|+ ||+.+..
T Consensus 69 ~~q~~~---~~~~tv~~nl~~~-----------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 69 LPQRPY---LPLGTLREQLIYP-----------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128 (166)
T ss_pred ECCCCc---cccccHHHHhhcc-----------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence 111100 0000111111000 2345778999999999999988888888 7777777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 217 ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 217 ~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
.+.+.+.+.+ .+...++|+... ...||++++++++
T Consensus 129 ~l~~~l~~~~-~tiiivsh~~~~-------~~~~d~i~~l~~~ 163 (166)
T cd03223 129 RLYQLLKELG-ITVISVGHRPSL-------WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHhC-CEEEEEeCChhH-------HhhCCEEEEEcCC
Confidence 7777777653 467777888754 3579999988764
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.75 E-value=5.1e-19 Score=159.35 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=115.7
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc----ceee
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK----DYFF 142 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~----~~~~ 142 (286)
.++.+.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|. ++..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~-Gei~~I~G~nGsGKSTLlr~L~Gl~~------------p~~G~I~idG~~~~~~i~~ 94 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEE-GEICVLMGLSGSGKSSLLRAVNGLNP------------VSRGSVLVKDGDGSIDVAN 94 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCEeccccccc
Confidence 466778886 78999999998 99999999999999999999999987 66676 5664 3333
Q ss_pred eCHHHHHHH----h----hccchhhhheeccc------ccCccHH----HHHHHH---------hcCCcEEEEeCHHHHH
Q 043263 143 VSKEEFLQM----V----DKNELLEYALVYGD------YKGIPKK----QIREYM---------AKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~~~~~----i----~~~~~~~~~~~~~~------~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~ 195 (286)
.+...++.. + ++..+..+..+..| ..+.... .+.+++ ......+++|+.|++.
T Consensus 95 ~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~ 174 (382)
T TIGR03415 95 CDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVG 174 (382)
T ss_pred CCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 333333221 1 12122221122222 1122221 222222 2222346678999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++.+|+++|+ ||+.+...+.+.|.+. .+.|...++|+++.. .+.||+|+++++|++
T Consensus 175 LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~------~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 175 LARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA------LKIGNRIAIMEGGRI 243 (382)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99999988888888 7777677776666542 244778889999885 478999999998865
No 204
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.7e-20 Score=153.12 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=110.2
Q ss_pred HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
.++|+++.|+....++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+..
T Consensus 2 ~~~~l~~~~~~~~~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~gl~~------------~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 2 RLDKIRFSYGEQPMHFDLTFAQ-GEITAIVGPSGSGKSTLLNLIAGFET------------PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred EEEeEEEEeCCEecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEcCcCCHh
Confidence 4567777776533478888887 99999999999999999999999986 55555 455443221111
Q ss_pred H--HHHHhhc------cchhhhheeccccc-C---ccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 147 E--FLQMVDK------NELLEYALVYGDYK-G---IPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 147 ~--~~~~i~~------~~~~~~~~~~~~~~-~---~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
. +....++ ....++..+..... . ...+.+.+.+ ......+++|++|++.+|++++.+|+
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 0 0000011 11122221110000 0 0112222222 22334577889999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i 207 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA------KRLAQRVVFLDNGRI 207 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HhhhCEEEEEECCEE
Confidence 8888 7777777777766643 234677779988874 367999999999875
No 205
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.75 E-value=1.7e-19 Score=154.32 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=110.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++ . |.+|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKK-GEIHAIMGPNGSGKSTLSKTIAGHPSYE------------VTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCC------------CCcceEEECCEecCC
Confidence 46788888875 78999999998 9999999999999999999999984 4 44454 45544332
Q ss_pred eCHHHHHH----Hh-hccch------hhhheec-cccc------Ccc----HHHHHHHH----------hcCCc-EEEEe
Q 043263 143 VSKEEFLQ----MV-DKNEL------LEYALVY-GDYK------GIP----KKQIREYM----------AKGYD-IVLRV 189 (286)
Q Consensus 143 ~~~~~~~~----~i-~~~~~------~~~~~~~-~~~~------~~~----~~~i~~~~----------~~g~~-~v~~~ 189 (286)
.+...... .+ ++..+ .++.... .... ... .+.+.+.+ ..... .+++|
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G 148 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGG 148 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHH
Confidence 22211110 00 11111 1110000 0000 001 11122211 11222 37789
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCCC
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAEGK 260 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G~ 260 (286)
++|++.+|++++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|+++.. ... ||+++++++|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~------~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL------NYIKPDYVHVLLDGR 222 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH------HhhcCCeEEEEeCCE
Confidence 99999999999988888888 77777777777776542 34667778988874 245 89999999887
Q ss_pred H
Q 043263 261 L 261 (286)
Q Consensus 261 i 261 (286)
+
T Consensus 223 i 223 (243)
T TIGR01978 223 I 223 (243)
T ss_pred E
Confidence 5
No 206
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.5e-20 Score=159.71 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=112.0
Q ss_pred HHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 67 IELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 67 ~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
.++++|+++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g 72 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKK-NKVTCVIGTTGSGKSTMIQLTNGLII------------SETGQTIVGD 72 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECC
Confidence 4678888888863 68899999998 99999999999999999999999986 44554 444
Q ss_pred cceee----e-CHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHHH----------hcCCcEEE
Q 043263 138 KDYFF----V-SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREYM----------AKGYDIVL 187 (286)
Q Consensus 138 ~~~~~----~-~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~~----------~~g~~~v~ 187 (286)
.++.. . +...++..+ .+. ...++..+.....+... +.+.+.+ ......++
T Consensus 73 ~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS 152 (289)
T PRK13645 73 YAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELS 152 (289)
T ss_pred EEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCC
Confidence 43310 0 111111111 111 11111111000011111 1111121 12234566
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~ 226 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV------LRIADEVIVMHE 226 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEEC
Confidence 7899999999999988888888 7777677776666543 234677789988864 368999999988
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 227 G~i 229 (289)
T PRK13645 227 GKV 229 (289)
T ss_pred CEE
Confidence 865
No 207
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.74 E-value=1.1e-19 Score=153.68 Aligned_cols=176 Identities=17% Similarity=0.199 Sum_probs=111.9
Q ss_pred hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
..++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~ 76 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHP-GEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGK 76 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCcEEEECCC
Confidence 34778889998862 68999999998 99999999999999999999999986 55565 4555
Q ss_pred ceeeeCHHHHHHHh----hcc-----chhhhheecccccCc---cH-------HH--------HHHHHhcCCcEEEEeCH
Q 043263 139 DYFFVSKEEFLQMV----DKN-----ELLEYALVYGDYKGI---PK-------KQ--------IREYMAKGYDIVLRVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~---~~-------~~--------i~~~~~~g~~~v~~~~~ 191 (286)
++...+...++..+ ++. ...++..+....... .. +. +...+......+++|++
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~ 156 (226)
T cd03248 77 PISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156 (226)
T ss_pred chHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence 44322222222111 111 112221110000000 00 00 01112222344567899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.+.+.. +.+...++|+++.. ..||+|+++++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV-------ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-------HhCCEEEEecCCcC
Confidence 999999999988888877 77776777777776532 23566678887763 45999999988753
No 208
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-19 Score=160.48 Aligned_cols=182 Identities=17% Similarity=0.153 Sum_probs=118.9
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..+.++|+++.|.. .|+++++.+.+ |++++|+|+||||||||+++|+|+...... .|..|+ ++|.+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~-Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~-------~p~~G~I~idG~~ 150 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKR-NKVTAFIGPSGCGKSTFLRNLNQLNDLIEG-------TSHEGEIYFLGTN 150 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEE
Confidence 46889999999952 79999999998 999999999999999999999998641100 023555 56666
Q ss_pred eeee--CHHHHHHHh---hcc------chhhhheecccccCccHHH-----HHH-------------HHhcCCcEEEEeC
Q 043263 140 YFFV--SKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQ-----IRE-------------YMAKGYDIVLRVD 190 (286)
Q Consensus 140 ~~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~-----i~~-------------~~~~g~~~v~~~~ 190 (286)
+... ....++..+ .+. ...++..+.....+...+. +.. .+.+....+++|+
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred ccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 5321 112222211 121 1122222111111111111 111 1234445677889
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++.+||+++.+|+++|+ ||+.+...+.+.|.+.. +.|...++|++... ...||+|+++++|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i------~~~~Driivl~~G~i 302 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA------QRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999999989998888 77777777767666532 34677789999985 356999999998875
No 209
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.74 E-value=1.8e-19 Score=156.15 Aligned_cols=176 Identities=17% Similarity=0.134 Sum_probs=112.4
Q ss_pred HHHhHhHHHHhc-----------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263 67 IELLRSLEASLG-----------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE- 134 (286)
Q Consensus 67 ~i~~~~v~~~~~-----------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~- 134 (286)
.++++||++.|+ ..+.++++.+.+ |++++|+||||||||||+++|+|+++ |.+|+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~------------p~~G~i 70 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIE------------PTSGEL 70 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCCCEE
Confidence 367888888884 168899999998 99999999999999999999999987 55555
Q ss_pred -cCCcceeeeCHHHHHHHh---hccc---h------hhhheeccccc-Ccc----HHHHHHHHh----------cCCcEE
Q 043263 135 -VNGKDYFFVSKEEFLQMV---DKNE---L------LEYALVYGDYK-GIP----KKQIREYMA----------KGYDIV 186 (286)
Q Consensus 135 -~~g~~~~~~~~~~~~~~i---~~~~---~------~~~~~~~~~~~-~~~----~~~i~~~~~----------~g~~~v 186 (286)
++|.++........+..+ .+.. + .++.......+ ... .+.+.+.++ .....+
T Consensus 71 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (267)
T PRK15112 71 LIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML 150 (267)
T ss_pred EECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhc
Confidence 455443211111111111 1110 0 00100000000 011 111222221 112456
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||++++++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~------~~~~d~i~~l~ 224 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM------KHISDQVLVMH 224 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH------HHhcCEEEEEE
Confidence 77899999999999988888888 7777777777766653 234677779988774 35799999998
Q ss_pred CCCH
Q 043263 258 EGKL 261 (286)
Q Consensus 258 ~G~i 261 (286)
+|++
T Consensus 225 ~G~i 228 (267)
T PRK15112 225 QGEV 228 (267)
T ss_pred CCEE
Confidence 8865
No 210
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.4e-19 Score=153.41 Aligned_cols=181 Identities=15% Similarity=0.115 Sum_probs=115.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .+..|+ ++|.++..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILK-NSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcC-CCEEEEECCCCCCHHHHHHHHhccccCCcC-------CCCceEEEECCEeccc
Confidence 4778999999975 78999999998 999999999999999999999998752100 012454 45554321
Q ss_pred e--CHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~ 193 (286)
. ....++..+ .+. ...++..+....++. . .+.+.+. .......+++|++|+
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred ccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 1 111122111 111 111211110000110 1 1112221 233334577889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i 227 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA------GRISDRTAFFLNGCI 227 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999989988888 77777777777776542 23666778988875 367999999988876
No 211
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=2.7e-19 Score=152.58 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=109.6
Q ss_pred HhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 69 LLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 69 ~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++.
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~ 68 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPP-GKTVALVGSSGCGKSTVVSLLERFYD------------PTSGEILLDGVDIR 68 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecC-CCEEEEEeCCCCCHHHHHHHHhccCC------------CCCCEEEECCEehh
Confidence 35667777742 67888888887 99999999999999999999999986 55665 5565443
Q ss_pred eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------H---HHh--------cCCcEEEEeCHH
Q 043263 142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------E---YMA--------KGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~---~~~--------~g~~~v~~~~~q 192 (286)
..+....+..+ .+. .+.++..+..... ..+.+. + .++ .....+++|++|
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 146 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ 146 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence 22222222111 111 1122211110000 111111 1 111 112356678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ..||+|+++++|++
T Consensus 147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-------~~~d~v~~l~~G~i 215 (238)
T cd03249 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-------RNADLIAVLQNGQV 215 (238)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCEE
Confidence 99999999988888887 77777777777776543 33556668887763 47999999999876
No 212
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=1.6e-18 Score=134.27 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=119.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
|.++++++.||. .|.++++.-+. |+.++++||||+|||||++.|.-+-- |++|+ +.|..+.+.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~-getlvllgpsgagkssllr~lnlle~------------p~sg~l~ia~~~fd~s 69 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPE-GETLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS 69 (242)
T ss_pred eEEcccccccccchheeeeeecCCC-CCEEEEECCCCCchHHHHHHHHHHhC------------CCCCeEEecccccccc
Confidence 667899999997 79999999998 99999999999999999999875543 77887 445433221
Q ss_pred --C-HHHHHHH-------hhccchhhhheeccc-------ccCccHHHHHH----H---------HhcCCcEEEEeCHHH
Q 043263 144 --S-KEEFLQM-------VDKNELLEYALVYGD-------YKGIPKKQIRE----Y---------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 144 --~-~~~~~~~-------i~~~~~~~~~~~~~~-------~~~~~~~~i~~----~---------~~~g~~~v~~~~~q~ 193 (286)
. ......+ +++..+..+..+..| ..+.++++... . ...-.--+.+|+.||
T Consensus 70 ~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqr 149 (242)
T COG4161 70 KTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQR 149 (242)
T ss_pred cCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhh
Confidence 1 1222222 233333333333333 23444332211 1 111223567899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERKT--ENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+++||+++..|.+++| |||.-...+..-+++..+ .|-.+++|..+.+ .+.|.+|+.+++|.+.|
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va------~k~as~vvyme~g~ive 221 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA------RKTASRVVYMENGHIVE 221 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH------HhhhhheEeeecCeeEe
Confidence 9999999999999998 777655566666666543 2445568877765 47788999999998755
No 213
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=2.8e-19 Score=155.10 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=113.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC--------CCC--c
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR--------PGE--V 135 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~--------~G~--~ 135 (286)
++++|+++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|+++ |. .|+ +
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~laG~~~------------p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEP-GRVTALLGRNGAGKSTLLKALAGDLT------------GGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CcccccccCCceEEEE
Confidence 456788888875 78999999998 99999999999999999999999976 43 455 5
Q ss_pred CCcceeeeCHHHHHHHh---hcc-------chhhhheeccccc----C-c---cHHHHHHHH---------hcCCcEEEE
Q 043263 136 NGKDYFFVSKEEFLQMV---DKN-------ELLEYALVYGDYK----G-I---PKKQIREYM---------AKGYDIVLR 188 (286)
Q Consensus 136 ~g~~~~~~~~~~~~~~i---~~~-------~~~~~~~~~~~~~----~-~---~~~~i~~~~---------~~g~~~v~~ 188 (286)
+|.++...+...++..+ .+. ...++........ . . ..+.+.+.+ ......+++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 148 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSG 148 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCH
Confidence 66655433333333221 111 1122221110000 0 0 111222222 223345677
Q ss_pred eCHHHHHHHHHHhC---------CCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 189 VDIQGARTLRRILG---------DSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 189 ~~~q~v~iaral~~---------~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
|++|++.++++++. +|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~------~~~~ 222 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA------ARHA 222 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhC
Confidence 89999999999994 7777777 7776677777666542 234667778988874 3679
Q ss_pred cEEEECCCCCH
Q 043263 251 DYVVVNAEGKL 261 (286)
Q Consensus 251 d~viv~~~G~i 261 (286)
|+++++++|++
T Consensus 223 d~i~~l~~G~i 233 (272)
T PRK13547 223 DRIAMLADGAI 233 (272)
T ss_pred CEEEEEECCeE
Confidence 99999998875
No 214
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.9e-19 Score=140.24 Aligned_cols=174 Identities=20% Similarity=0.181 Sum_probs=109.8
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~ 143 (286)
+.+++++.+|++ .+.++++.+.+ |+.++++|||||||||++++++|+..+..+.+. ++|..+.-
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~-ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~----------l~~r~i~g- 71 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIAS-GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ----------LNGRRIEG- 71 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecC-CCEEEEEcCCCccHHHHHHHHhcCcCcccceEE----------ECCEeccC-
Confidence 345677778865 68999999998 999999999999999999999999873333333 33432211
Q ss_pred CHHHHHHHhhccchhhhheeccc------ccCccHHHHHHH----H--------hcC-CcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQMVDKNELLEYALVYGD------YKGIPKKQIREY----M--------AKG-YDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~i~~~----~--------~~g-~~~v~~~~~q~v~iaral~~~~ 204 (286)
+..+-.-.++++.++.+....+| +.++.+.+-.+. + ... ..-+++|.+||+.+||++.-+|
T Consensus 72 PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 72 PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence 00110111122333333222222 344444322221 1 111 2345688999999999999788
Q ss_pred cEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 205 AVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
+++++ ||+-+.+.+++-|.. +.+.....|+|.++.+ +-.++++++++.|
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA------lflatrLvvlsp~ 209 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA------LFLATRLVVLSPG 209 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH------HhhhheeEEecCC
Confidence 77776 666666666655543 2344666779988887 5678999988754
No 215
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.74 E-value=9.1e-20 Score=152.89 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=109.8
Q ss_pred HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
+++||++.|+..+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++....
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~-- 66 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVAD-GEIVAIMGPSGAGKSTLLNLIAGFIE------------PASGSIKVNDQSHTGLA-- 66 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEcccCC--
Confidence 3567888887667788888888 99999999999999999999999986 45554 4454432111
Q ss_pred HHHHHh----hc------cchhhhheec--cccc--CccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 147 EFLQMV----DK------NELLEYALVY--GDYK--GIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 147 ~~~~~i----~~------~~~~~~~~~~--~~~~--~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
..+..+ ++ ....++..+. .... ....+.+.++ .......+++|++|++.+|++++.+
T Consensus 67 ~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 67 PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP 146 (213)
T ss_pred hhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 001100 11 1112221110 0000 0011122222 2333456778999999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~------~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA------RAIASQIAVVSQGKI 207 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCeEEEEECCeE
Confidence 888777 7777677776666543 234677778888764 367999999998875
No 216
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.74 E-value=3e-19 Score=154.67 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=111.0
Q ss_pred HHhHhHHHHhc---------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--
Q 043263 68 ELLRSLEASLG---------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-- 134 (286)
Q Consensus 68 i~~~~v~~~~~---------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-- 134 (286)
+.++||++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~ 69 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEE-GETVGLLGRSGCGKSTLARLLLGLEK------------PAQGTVS 69 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEE
Confidence 44567777773 1 68899999998 99999999999999999999999986 66665
Q ss_pred cCCcceeeeCHHH---HHHHh---hccc---hhhhheeccc-------ccCcc----HHHHHHHH----------hcCCc
Q 043263 135 VNGKDYFFVSKEE---FLQMV---DKNE---LLEYALVYGD-------YKGIP----KKQIREYM----------AKGYD 184 (286)
Q Consensus 135 ~~g~~~~~~~~~~---~~~~i---~~~~---~~~~~~~~~~-------~~~~~----~~~i~~~~----------~~g~~ 184 (286)
++|.++...+... ++..+ .+.. +........+ ..... .+.+.+++ .....
T Consensus 70 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 149 (265)
T TIGR02769 70 FRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPR 149 (265)
T ss_pred ECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 5665544333221 11111 1111 1111111110 11111 11222222 22223
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVV 255 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv 255 (286)
.+++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||++++
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~------~~~~d~i~~ 223 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV------QSFCQRVAV 223 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHHhcEEEE
Confidence 4667899999999999988887777 6666566666666542 244777789988875 357999999
Q ss_pred CCCCCH
Q 043263 256 NAEGKL 261 (286)
Q Consensus 256 ~~~G~i 261 (286)
+++|++
T Consensus 224 l~~G~i 229 (265)
T TIGR02769 224 MDKGQI 229 (265)
T ss_pred EeCCEE
Confidence 988864
No 217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.74 E-value=2.6e-19 Score=148.67 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=110.5
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcceee
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+. . |..|+ ++|.++..
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~------------p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKK-GEVHALMGPNGSGKSTLAKTIMGHPKYE------------VTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECC-CcEEEEECCCCCCHHHHHHHHhCCCcCC------------CCccEEEECCEECCc
Confidence 35677777764 78899999998 9999999999999999999999983 4 66676 67776544
Q ss_pred eCHHHHHHHhhccchhhhh-eecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263 143 VSKEEFLQMVDKNELLEYA-LVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE 215 (286)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~ 215 (286)
.+....... .-.++... ..+ .+.... +.+..-...+.+|++|++.++++++.+|+++|+ ||+.+.
T Consensus 69 ~~~~~~~~~--~i~~v~q~~~~~---~~~~~~---~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 140 (200)
T cd03217 69 LPPEERARL--GIFLAFQYPPEI---PGVKNA---DFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140 (200)
T ss_pred CCHHHHhhC--cEEEeecChhhc---cCccHH---HHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 333322110 00111000 000 111221 112222235778999999999999988888777 666667
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCH
Q 043263 216 MALVERLVER--KTENREELLVRIATAREEVQHVK-NFDYVVVNAEGKL 261 (286)
Q Consensus 216 ~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i 261 (286)
..+.+.|.+. .+.+...++|+++.. .. .||+++++++|++
T Consensus 141 ~~l~~~L~~~~~~~~tiii~sh~~~~~------~~~~~d~i~~l~~G~i 183 (200)
T cd03217 141 RLVAEVINKLREEGKSVLIITHYQRLL------DYIKPDRVHVLYDGRI 183 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHH------HHhhCCEEEEEECCEE
Confidence 7777766643 233667778988763 24 6999999998866
No 218
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.73 E-value=8.6e-19 Score=146.18 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=103.5
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
+||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++......
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~ 68 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEK-GKMYAIIGESGSGKSTLLNIIGLLEK------------FDSGQVYLNGKETPPLNSK 68 (206)
T ss_pred cceEEEECCEEEEeceEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEccccchh
Confidence 567777764 78899999998 99999999999999999999999986 55665 566554322211
Q ss_pred ----HHHHHh----hc------cchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263 147 ----EFLQMV----DK------NELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 147 ----~~~~~i----~~------~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iara 199 (286)
..+..+ +. ....++..+.....+.. .+.+.+.+ ......+++|++|++.+|++
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence 111111 11 11122111110111111 11222222 22234466789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++.. ...||+++++
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-------~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-------AKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HhhcCEEEeC
Confidence 9988888888 7777777777766653 23356667887764 3568888763
No 219
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4.7e-19 Score=150.87 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=111.1
Q ss_pred HhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 69 LLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 69 ~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+++|+++.|+ . .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~v~~~g~~~~~~ 68 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPA-GKKVAIVGPSGSGKSTILRLLFRFYD------------VSSGSILIDGQDIREV 68 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEECCEEhhhC
Confidence 3567777774 2 68899999998 99999999999999999999999986 55665 556544332
Q ss_pred CHHHHHHHh----hcc-----chhhhheecccccCccHHHHHH---------H---Hh--------cCCcEEEEeCHHHH
Q 043263 144 SKEEFLQMV----DKN-----ELLEYALVYGDYKGIPKKQIRE---------Y---MA--------KGYDIVLRVDIQGA 194 (286)
Q Consensus 144 ~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~~~~i~~---------~---~~--------~g~~~v~~~~~q~v 194 (286)
+...++..+ ++. ...++..+. .. ......+.. . ++ .....+++|++|++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl 146 (236)
T cd03253 69 TLDSLRRAIGVVPQDTVLFNDTIGYNIRYG-RP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV 146 (236)
T ss_pred CHHHHHhhEEEECCCChhhcchHHHHHhhc-CC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 332222211 111 112221111 00 011111111 1 11 12235677899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ..||+++++++|++.
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-------~~~d~~~~l~~g~i~ 214 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-------VNADKIIVLKDGRIV 214 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-------HhCCEEEEEECCEEE
Confidence 999999988888888 77777777777776532 33666678888763 459999999988763
No 220
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=1.7e-19 Score=155.99 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=113.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|++.... +..|+ ++|.++...
T Consensus 5 l~~~nl~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---------~~~G~i~~~g~~~~~~ 74 (262)
T PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHH-GEMVALLGPSGSGKSTLLRHLSGLITGDK---------SAGSHIELLGRTVQRE 74 (262)
T ss_pred EEEeeEEEEeCCeEEEecceEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCCCC---------CCceEEEECCEecccc
Confidence 667889998875 79999999998 99999999999999999999999975110 01244 455443221
Q ss_pred C-----HHHHHHHh----hcc------chhhhheecc------------cccCccHHHHHHH---------HhcCCcEEE
Q 043263 144 S-----KEEFLQMV----DKN------ELLEYALVYG------------DYKGIPKKQIREY---------MAKGYDIVL 187 (286)
Q Consensus 144 ~-----~~~~~~~i----~~~------~~~~~~~~~~------------~~~~~~~~~i~~~---------~~~g~~~v~ 187 (286)
. ...++..+ +.. ...++..+.. .......+.+.++ .......++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 154 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLS 154 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccC
Confidence 1 11111111 111 1111111100 0000001112222 233445577
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+|++|++.++++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~------~~~~d~i~~l~~ 228 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA------LRYCERIVALRQ 228 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEEC
Confidence 8999999999999988888888 7777777777766653 234677788988864 367999999988
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 229 g~i 231 (262)
T PRK09984 229 GHV 231 (262)
T ss_pred CEE
Confidence 865
No 221
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.7e-19 Score=153.51 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=113.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|+++.... .|..|+ ++|.++..
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-------~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPK-NSVTALIGPSGCGKSTFIRCLNRMNDLIKN-------CRIEGKVSIEGEDIYE 83 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCcccC-------CCcceEEEECCEEccc
Confidence 4778999999975 79999999998 999999999999999999999998741000 013454 45544321
Q ss_pred eC--HHHHHHHh---hcc------chhhhheecccccCccHH----HHHHHH-------------hcCCcEEEEeCHHHH
Q 043263 143 VS--KEEFLQMV---DKN------ELLEYALVYGDYKGIPKK----QIREYM-------------AKGYDIVLRVDIQGA 194 (286)
Q Consensus 143 ~~--~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~----~i~~~~-------------~~g~~~v~~~~~q~v 194 (286)
.. ...++..+ .+. ...++..+....++...+ .+.+++ ......+++|++|++
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 11 11112111 111 111211110001111111 122222 222345667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+|+++++|++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i 231 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA------ARISDYTGFFLMGEL 231 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888887 77777777777776532 33666778988874 367999999998875
No 222
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-19 Score=156.33 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=112.0
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~~~ 68 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEK-GEMVALLGPNGAGKSTLFLHFNGILK------------PTSGEVLIKGEPIKY 68 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEECcc
Confidence 346788888852 78999999998 99999999999999999999999986 55555 55554421
Q ss_pred --eCHHHHHHHh---hcc--------chhhhheeccc-ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263 143 --VSKEEFLQMV---DKN--------ELLEYALVYGD-YKGIPK----KQIREYM---------AKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 --~~~~~~~~~i---~~~--------~~~~~~~~~~~-~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ 195 (286)
.+....+..+ .+. ...++.. ++. ..+... +.+.+++ ......+++|+.|++.
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 69 DKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA-FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA 147 (275)
T ss_pred ccchHHHHHhheEEEeeChhhhhccccHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH
Confidence 0111111111 111 1112111 111 011111 1122222 2223456678999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|.+
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~------~~~~d~i~~l~~G~i 215 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV------PVYADKVYVMSDGKI 215 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999988888888 7777677776666643 234777789998875 357999999987754
No 223
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.73 E-value=3.4e-19 Score=150.15 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=109.8
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~-G~~~~I~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~ 69 (220)
T TIGR02982 3 SIRNLNHYYGHGSLRKQVLFDINLEINP-GEIVILTGPSGSGKTTLLTLIGGLRS------------VQEGSLKVLGQEL 69 (220)
T ss_pred EEEEEEEEccCCCcceeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEh
Confidence 34566666642 58888888887 99999999999999999999999986 55665 566654
Q ss_pred eeeCHHH---HHHHh----hc------cchhhhheeccccc-CccH----HHHHHH---------HhcCCcEEEEeCHHH
Q 043263 141 FFVSKEE---FLQMV----DK------NELLEYALVYGDYK-GIPK----KQIREY---------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~---~~~~i----~~------~~~~~~~~~~~~~~-~~~~----~~i~~~---------~~~g~~~v~~~~~q~ 193 (286)
...+... ++..+ ++ ....++..+....+ .... +.+.++ .......+.+|++|+
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred HhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 3222211 11111 11 11122211111111 1111 112222 222334566789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
+.++++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++. ...||+|+++++|+
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-------~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-------LDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-------HhhCCEEEEEECCE
Confidence 9999999988888888 7777776776666543 23477777898764 46899999998875
No 224
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=5.4e-19 Score=152.38 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=115.9
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
...+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKP-GQKVGICGRTGSGKSSLSLAFFRMVD------------IFDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccC------------CCCCeEEECCE
Confidence 345788999999863 68999999998 99999999999999999999999986 66666 6676
Q ss_pred ceeeeCHHHHHHHh---hcc-chhhhheeccccc---CccHHHHH---------HHH---hcCC--------cEEEEeCH
Q 043263 139 DYFFVSKEEFLQMV---DKN-ELLEYALVYGDYK---GIPKKQIR---------EYM---AKGY--------DIVLRVDI 191 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~-~~~~~~~~~~~~~---~~~~~~i~---------~~~---~~g~--------~~v~~~~~ 191 (286)
++...+...++..+ .+. .+.. ..+..+.. ......+. +.+ +.+. ..+.+|++
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 55433433333322 111 1111 11111110 00111111 111 1122 24556889
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+.+.+.+.+.+.. +.+...++|+++.. ..||+|+++++|++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-------~~~dri~~l~~G~i 232 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI-------LDADLVLVLSRGIL 232 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHH-------HhCCEEEEEECCEE
Confidence 999999999988888888 67766667766666532 33666678988874 35999999998876
No 225
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-19 Score=153.99 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=111.2
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++++||++.|+....++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++.....
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVER-GERVAILGPSGAGKSTLLNLIAGFLT------------PASGSLTLNGQDHTTTPP 68 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCeecCcCCh
Confidence 35678888887644578888887 99999999999999999999999987 44554 44543321111
Q ss_pred HH--HHHHhhc------cchhhhheec--cccc-C-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 146 EE--FLQMVDK------NELLEYALVY--GDYK-G-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 146 ~~--~~~~i~~------~~~~~~~~~~--~~~~-~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
.. +....++ ....++..+. .... . ...+.+.+. +......+++|++|++.+|++++.+|
T Consensus 69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 00 0000011 1122222110 0000 0 011112222 23344567789999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++|++
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~i 208 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA------ARIAPRSLVVADGRI 208 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 88888 7777777777766643 234667778988864 367999999988865
No 226
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.6e-19 Score=153.61 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=115.9
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..++++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|+++... ..|..|+ ++|.++.
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPE-KTVTAFIGPSGCGKSTFLRCLNRMNDTID-------GCRVTGKITLDGEDIY 89 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccccc-------CCCCceEEEECCEECc
Confidence 35889999999976 79999999998 99999999999999999999999874100 0024454 4555442
Q ss_pred ee--CHHHHHHHh----hcc-----chhhhheecccccCc--c----HHHHHHHH-------------hcCCcEEEEeCH
Q 043263 142 FV--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI--P----KKQIREYM-------------AKGYDIVLRVDI 191 (286)
Q Consensus 142 ~~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~--~----~~~i~~~~-------------~~g~~~v~~~~~ 191 (286)
.. ....++..+ +.. ...++..+....++. . .+.+.+++ ......+++|++
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 11 111222211 111 112221110000111 1 11122221 222345677899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~------~~~~d~v~~l~~G~i 240 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQA------ARVSQRTAFFHLGNL 240 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHH------HhhCCEEEEEECCEE
Confidence 999999999988888888 77776777777776542 33666778988875 367999999998876
No 227
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=3e-19 Score=158.87 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=118.3
Q ss_pred HHHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.++++||++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|+++... ...|+ ++|.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~---------~~sG~I~~~G~ 81 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRA-GETLGIVGESGSGKSQTAFALMGLLAANG---------RIGGSATFNGR 81 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCCCCC---------CCCeEEEECCE
Confidence 477889988884 1 68999999998 99999999999999999999999986110 02555 6777
Q ss_pred ceeeeCHHHHHHH-------hhccc---hhhhheecc------ccc-CccHH----HHHHHH------------hcCCcE
Q 043263 139 DYFFVSKEEFLQM-------VDKNE---LLEYALVYG------DYK-GIPKK----QIREYM------------AKGYDI 185 (286)
Q Consensus 139 ~~~~~~~~~~~~~-------i~~~~---~~~~~~~~~------~~~-~~~~~----~i~~~~------------~~g~~~ 185 (286)
++...+..+++.. +.|+. +.....+.. ..+ +...+ .+.+.+ ......
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCccc
Confidence 7655555444321 12221 100000000 000 11111 112222 122345
Q ss_pred EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+ ..+.+...++|++... ...||+|+++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~------~~~~Dri~vm 235 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV------AGICDKVLVM 235 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH------HHhCCEEEEE
Confidence 678899999999999989988888 777767766665543 2244778889999875 3679999999
Q ss_pred CCCCHH
Q 043263 257 AEGKLD 262 (286)
Q Consensus 257 ~~G~i~ 262 (286)
.+|++.
T Consensus 236 ~~G~iv 241 (330)
T PRK09473 236 YAGRTM 241 (330)
T ss_pred ECCEEE
Confidence 988763
No 228
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.73 E-value=8.9e-19 Score=164.43 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=116.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|+++ |.+|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~G~~~------------p~~G~i~~~~~~~~~~ 70 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNA-GDSWAFVGANGSGKSALARALAGELP------------LLSGERQSQFSHITRL 70 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCceEEECCcccccC
Confidence 677899999975 79999999998 99999999999999999999999986 66666 445544322
Q ss_pred CHHHHHHHh---hcc-ch--hh------hheeccccc-C-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263 144 SKEEFLQMV---DKN-EL--LE------YALVYGDYK-G-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 144 ~~~~~~~~i---~~~-~~--~~------~~~~~~~~~-~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral 200 (286)
+...++..+ .+. .+ +. ......+.. . ...+.+.+. +......+++|++||+++|+++
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 71 SFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred CHHHHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 322222211 111 10 00 011111110 0 011122222 2333456778999999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~------~~~~d~v~~l~~G~i 213 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI------PDFVQFAGVLADCTL 213 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhCCEEEEEECCEE
Confidence 988888888 7777777777766553 233667778988875 367999999998865
No 229
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4e-19 Score=150.94 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=110.3
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE 146 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~ 146 (286)
.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|.++...+.+. ++|.++......
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~----------~~g~~~~~~~~~ 70 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKE-GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL----------LDGKDITNLPPH 70 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------ECCEEcCcCChh
Confidence 35677888864 78999999998 999999999999999999999999873333332 344333211110
Q ss_pred H--HH------HHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 147 E--FL------QMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 147 ~--~~------~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
. +. ..+......++..+....++.. .+.+..+ +......+.+|++|++.++++++.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 00 0000001111111100011111 1122222 222234466789999999999999998
Q ss_pred EEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+++++++|++
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~------~~~~d~i~~l~~G~~ 209 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA------LTMSDRIAVMNKGKI 209 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence 8888 7777777777766543 244777788988764 367999999988875
No 230
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=3.6e-19 Score=167.70 Aligned_cols=176 Identities=15% Similarity=0.193 Sum_probs=117.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHA-GEVHALLGGNGAGKSTLMKIIAGIVP------------PDSGTLEIGGNPCAR 77 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence 4778999999976 69999999998 99999999999999999999999986 56666 56655433
Q ss_pred eCHHHHHH----Hhhcc-chhhhheecccc------cCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263 143 VSKEEFLQ----MVDKN-ELLEYALVYGDY------KGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 143 ~~~~~~~~----~i~~~-~~~~~~~~~~~~------~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~ 202 (286)
.+...... .+.+. .+.....+..++ .....+.+.+.+ ......+++|++|++.+|++++.
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 33322221 11111 111111111111 001112223322 22224566789999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~------~~~~d~i~~l~~G~i 218 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI------RQLADRISVMRDGTI 218 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 8888888 7777777777776653 234667779988875 367999999988865
No 231
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.73 E-value=4.1e-19 Score=153.27 Aligned_cols=176 Identities=17% Similarity=0.134 Sum_probs=114.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc---
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD--- 139 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~--- 139 (286)
.++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.+
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYP-GEVLGIVGESGSGKTTLLNALSARLA------------PDAGEVHYRMRDGQL 72 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCccccc
Confidence 3678899999874 78999999998 99999999999999999999999986 55565 55554
Q ss_pred --eeeeCHHHHHH----H---hhccc---h------hhhhe----eccc-ccCccHHHHHHH----------HhcCCcEE
Q 043263 140 --YFFVSKEEFLQ----M---VDKNE---L------LEYAL----VYGD-YKGIPKKQIREY----------MAKGYDIV 186 (286)
Q Consensus 140 --~~~~~~~~~~~----~---i~~~~---~------~~~~~----~~~~-~~~~~~~~i~~~----------~~~g~~~v 186 (286)
+...+...... . +.+.. + .++.. .+.. .+....+.+.++ +......+
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 33222222111 0 11111 0 00100 0000 000001111111 22334557
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++|++|++.+||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~------~~~~d~i~~l~ 226 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA------RLLAHRLLVMK 226 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhcCEEEEEE
Confidence 78999999999999988888888 7777777777766542 234667789988875 35799999999
Q ss_pred CCCH
Q 043263 258 EGKL 261 (286)
Q Consensus 258 ~G~i 261 (286)
+|++
T Consensus 227 ~g~i 230 (258)
T PRK11701 227 QGRV 230 (258)
T ss_pred CCEE
Confidence 8876
No 232
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.9e-19 Score=161.73 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=108.3
Q ss_pred hHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC----H
Q 043263 72 SLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS----K 145 (286)
Q Consensus 72 ~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~----~ 145 (286)
||++.|+....++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.... .
T Consensus 5 ~l~k~~~~~~~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 5 NFKQQLGDLCLTVNLTLPA-QGITAIFGRSGAGKTSLINAISGLTR------------PQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred EEEEEeCCEEEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEcccccccccc
Confidence 6677776533377888887 99999999999999999999999986 55554 4554432110 0
Q ss_pred HHHHHH---h-hccchhhhheeccccc-C---ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263 146 EEFLQM---V-DKNELLEYALVYGDYK-G---IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFV 208 (286)
Q Consensus 146 ~~~~~~---i-~~~~~~~~~~~~~~~~-~---~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~I 208 (286)
...+.. + ++..+..+..+..++. + ...+.+.+. +......+++|++||+++||+++.+|+++|
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 011111 1 1111221212222210 0 111222222 233345677899999999999998888888
Q ss_pred E------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 209 F------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 209 l------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~------~~~~d~i~~l~~G~i 207 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI------LRLADRVVVLEQGKV 207 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence 7 7776667676666542 234677789988765 478999999999876
No 233
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.9e-19 Score=151.56 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=114.1
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++.. .. .+..|+ ++|.++.
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~--------~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPE-NEVTAIIGPSGCGKSTFIKTLNLMIQMVPN--------VKLTGEMNYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCCC--------CCCceEEEECCEEcc
Confidence 4788999999975 79999999998 999999999999999999999998641 00 002344 4454432
Q ss_pred e--eCHHHHHHHh---hcc------chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263 142 F--VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~--~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q 192 (286)
. .....++..+ .+. ...++..+....++. .. +.+.+. +......+++|++|
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 1 1111111111 111 112222111111111 11 111111 12233456778999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.++++++.+|+++++ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~i 232 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA------ARVSDQTAFFYMGEL 232 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence 99999999988888888 77777777777776542 33667778988874 368999999988875
No 234
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.8e-19 Score=152.47 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=114.5
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|.++.
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-------~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAK-NQVTAFIGPSGCGKSTLLRTFNRMYELYPE-------QRAEGEILLDGENIL 83 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC-------CCcceEEEECCEEcc
Confidence 34778899999975 79999999998 999999999999999999999998631000 023444 4444332
Q ss_pred e--eCHHHHHHHh----hcc-----chhhhheeccccc-CccH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263 142 F--VSKEEFLQMV----DKN-----ELLEYALVYGDYK-GIPK----KQIREY-------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~--~~~~~~~~~i----~~~-----~~~~~~~~~~~~~-~~~~----~~i~~~-------------~~~g~~~v~~~~~q 192 (286)
. .+...++..+ ++. ...++.......+ +... +.+.++ +......+++|++|
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 1 1111112111 111 1112111100000 1111 111211 22334457789999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+++++++|++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 233 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQA------ARCSDYTAFMYLGEL 233 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99999999988888888 77777777777776542 33566778988764 367999999998875
No 235
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.72 E-value=1.7e-18 Score=145.03 Aligned_cols=160 Identities=12% Similarity=0.031 Sum_probs=94.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc---CCcceeeeCHHHHHHHhhccc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV---NGKDYFFVSKEEFLQMVDKNE 156 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~---~g~~~~~~~~~~~~~~i~~~~ 156 (286)
+++++++.+.+ |++++|+||||||||||+++|+|+++ |.+|++ +|..+. .... ...+....
T Consensus 2 vl~~vs~~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~------------~~sG~i~~~~~~~~~-~~~~--~~l~~~lt 65 (213)
T PRK15177 2 VLDKTDFVMGY-HEHIGILAAPGSGKTTLTRLLCGLDA------------PDEGDFIGLRGDALP-LGAN--SFILPGLT 65 (213)
T ss_pred eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCCCEEEecCceec-cccc--cccCCcCc
Confidence 35677777777 99999999999999999999999986 555652 222211 1000 00111111
Q ss_pred hhhhheecccccCccHHHHHH----------HHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263 157 LLEYALVYGDYKGIPKKQIRE----------YMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE 220 (286)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~i~~----------~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~ 220 (286)
..++..+....++...+.+.. ........+.+|++|++++|++++.+|+++|+ +|+.+...+.+
T Consensus 66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 222221111111222111111 11222234667899999999999977776666 34444445555
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 221 RLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 221 rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+.+ ....+...++|++... ...||+++++++|++
T Consensus 146 ~l~~~~~~~~ii~vsH~~~~~------~~~~d~i~~l~~G~i 181 (213)
T PRK15177 146 ALACQLQQKGLIVLTHNPRLI------KEHCHAFGVLLHGKI 181 (213)
T ss_pred HHHHHhhCCcEEEEECCHHHH------HHhcCeeEEEECCeE
Confidence 5543 2233666678888764 357999999998865
No 236
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.2e-19 Score=152.08 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=111.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|.++..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPE-NSVTAIIGPSGCGKSTVLRSINRMHDLVPS-------ARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccCCCC-------CCCceEEEECCEEccc
Confidence 4678899999975 79999999998 999999999999999999999998631000 012333 44443321
Q ss_pred e--CHHHHHHHh----hcc------chhhhheecccccC-ccH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263 143 V--SKEEFLQMV----DKN------ELLEYALVYGDYKG-IPK----KQIREY-------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 143 ~--~~~~~~~~i----~~~------~~~~~~~~~~~~~~-~~~----~~i~~~-------------~~~g~~~v~~~~~q 192 (286)
. ....++..+ ++. ...++........+ ... +.+.+. +......+++|++|
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 1 111111111 111 11111111000001 011 112221 12233456778999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i 225 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA------ARVSDYTAFFYMGDL 225 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH------HhhCCEEEEEECCEE
Confidence 99999999988888888 77776777777666542 23566678988874 378999999988875
No 237
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.72 E-value=9.6e-19 Score=148.96 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=103.6
Q ss_pred HHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHH
Q 043263 75 ASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQ 150 (286)
Q Consensus 75 ~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~ 150 (286)
..|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.+... ....+..
T Consensus 29 ~~~~~~~il~~vs~~i~~-Ge~~~i~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~ 94 (236)
T cd03267 29 RKYREVEALKGISFTIEK-GEIVGFIGPNGAGKTTTLKILSGLLQ------------PTSGEVRVAGLVPWK-RRKKFLR 94 (236)
T ss_pred cccCCeeeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEccc-cchhhcc
Confidence 34444 78899999998 99999999999999999999999986 44444 34432211 0001111
Q ss_pred H---h-hcc-ch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263 151 M---V-DKN-EL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 151 ~---i-~~~-~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~ 206 (286)
. + ++. .+ .++.......++...+ .+...+ ......+++|++|++.+|++++.+|++
T Consensus 95 ~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 174 (236)
T cd03267 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI 174 (236)
T ss_pred cEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0 0 010 11 1111111111111111 112221 222234667899999999999988888
Q ss_pred EEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 207 FVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i 232 (236)
T cd03267 175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI------EALARRVLVIDKGRL 232 (236)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence 888 7777777777777653 234667778988764 367999999998875
No 238
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=7.9e-19 Score=149.38 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=111.3
Q ss_pred HhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 69 LLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 69 ~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
.++|+++.|+. .++++++.+.+ |++++|+|+|||||||++++|+|++. |..|+ ++|.++.....
T Consensus 2 ~~~~l~~~~~~~~l~~is~~i~~-Ge~~~i~G~nG~GKStLl~~l~G~~~------------p~~G~v~i~g~~~~~~~~ 68 (235)
T cd03299 2 KVENLSKDWKEFKLKNVSLEVER-GDYFVILGPTGSGKSVLLETIAGFIK------------PDSGKILLNGKDITNLPP 68 (235)
T ss_pred eeEeEEEEeCCceeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEcCcCCh
Confidence 35667777754 78888888888 99999999999999999999999986 55554 45544321111
Q ss_pred HHHHHH---h-hc------cchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263 146 EEFLQM---V-DK------NELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 146 ~~~~~~---i-~~------~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~ 202 (286)
. ... + ++ ....++..+.....+.. .+.+.++ +......+++|+.|++.+|++++.
T Consensus 69 ~--~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 69 E--KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred h--HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 0 000 0 11 11111111100011111 1112222 222334577889999999999999
Q ss_pred CCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++++ ||+.+...+.+.|.+.. +.+...++|++... ...||+++++++|++
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~------~~~~d~i~~l~~G~i 208 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA------WALADKVAIMLNGKL 208 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 9988888 88887888877776531 34667778988774 367999999988876
No 239
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-18 Score=150.18 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=113.2
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|+++..
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQ-NQVTALIGPSGCGKSTFLRCLNRMNDLIPG-------ARVEGEILLDGENIYD 77 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeC-CCEEEEECCCCCCHHHHHHHHHhhcccCCC-------CCCceEEEECCEEccc
Confidence 4778899999975 79999999998 999999999999999999999998520000 023444 45544321
Q ss_pred --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHHH-------------hcCCcEEEEeCHHH
Q 043263 143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREYM-------------AKGYDIVLRVDIQG 193 (286)
Q Consensus 143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~~-------------~~g~~~v~~~~~q~ 193 (286)
.....++..+ .+. ...++..+.....+. . .+.+.+.+ ......+++|++|+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 1111111111 111 111211110000111 0 11122221 22234567889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~------~~~~d~v~~l~~G~i 226 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA------ARVSDVTAFFYMGKL 226 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888877 77777777777666532 33666678988874 367999999998876
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.72 E-value=9.4e-20 Score=150.57 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=108.6
Q ss_pred HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--c
Q 043263 68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--V 135 (286)
Q Consensus 68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~ 135 (286)
++++||++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|++ . |..|+ +
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~-Ge~~~l~G~nGsGKStLl~~i~Gl~~~~------------~~~G~i~~ 70 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKP-GELTAIMGPSGAGKSTLLNALAGRRTGL------------GVSGEVLI 70 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCC------------CCceEEEE
Confidence 456778888752 68888999998 9999999999999999999999997 6 56666 6
Q ss_pred CCcceeeeCHHHHHHHhhccchhh-hheecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263 136 NGKDYFFVSKEEFLQMVDKNELLE-YALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF---- 209 (286)
Q Consensus 136 ~g~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il---- 209 (286)
+|+++.. ...+..+ .+.. +...+ ...+ .+.+.-... ...+++|++|++.+|++++.+|+++|+
T Consensus 71 ~g~~~~~---~~~~~~i---~~~~q~~~~~---~~~t~~~~i~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 71 NGRPLDK---RSFRKII---GYVPQDDILH---PTLTVRETLMFAAK--LRGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred CCEeCch---HhhhheE---EEccCcccCC---CCCcHHHHHHHHHH--hccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 6765431 1111111 1110 00011 1111 111111111 115788999999999999988888777
Q ss_pred --EecCCHHHHHHHHHHhc--CCCHHHHHHHHH-HHHHHhhccCCCcEEEECCCCCH
Q 043263 210 --LAAESEMALVERLVERK--TENREELLVRIA-TAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 --ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~-~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+.. +.+...++|++. .. ...||+++++++|++
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~------~~~~d~v~~l~~G~i 190 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEI------FELFDKLLLLSQGRV 190 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHH------HHhcCEEEEEeCCEE
Confidence 67766777766666532 336667788775 32 357999999998875
No 241
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.6e-19 Score=157.91 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=115.3
Q ss_pred HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|++.... .+..|+ ++|.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~--------~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTE-GEIRGLVGESGSGKSLIAKAICGVTKDNW--------RVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHccCCCCC--------CCcceEEEECCEE
Confidence 56788888883 2 78999999998 99999999999999999999999874100 023454 56665
Q ss_pred eeeeCHHHHHHH-------hhccc---h------hhhheec--cc-ccC-------ccHHHHHHHH------------hc
Q 043263 140 YFFVSKEEFLQM-------VDKNE---L------LEYALVY--GD-YKG-------IPKKQIREYM------------AK 181 (286)
Q Consensus 140 ~~~~~~~~~~~~-------i~~~~---~------~~~~~~~--~~-~~~-------~~~~~i~~~~------------~~ 181 (286)
+...+...+... +.|+. + .++.... .. ..+ ...+.+.+.+ ..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 544444333221 11111 0 0000000 00 000 0011222222 22
Q ss_pred CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
....+++|+.||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v------~~~~dr 228 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML------SQWADK 228 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCE
Confidence 2345778999999999999988888888 7776677776666542 245778889999885 368999
Q ss_pred EEECCCCCH
Q 043263 253 VVVNAEGKL 261 (286)
Q Consensus 253 viv~~~G~i 261 (286)
|+++++|++
T Consensus 229 i~vm~~G~i 237 (330)
T PRK15093 229 INVLYCGQT 237 (330)
T ss_pred EEEEECCEE
Confidence 999998876
No 242
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.71 E-value=1.5e-18 Score=150.53 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=112.0
Q ss_pred HHhHhHHHHhc---------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--
Q 043263 68 ELLRSLEASLG---------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-- 134 (286)
Q Consensus 68 i~~~~v~~~~~---------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-- 134 (286)
++++||++.|+ . .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~sG~i~ 70 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKS-GETVALLGRSGCGKSTLARLLVGLES------------PSQGNVS 70 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEE
Confidence 45678888886 2 68999999998 99999999999999999999999986 55665
Q ss_pred cCCcceeeeCHHH---HHHHh---hccc---hhhhheeccc-------ccCccH----HHHHHH----------HhcCCc
Q 043263 135 VNGKDYFFVSKEE---FLQMV---DKNE---LLEYALVYGD-------YKGIPK----KQIREY----------MAKGYD 184 (286)
Q Consensus 135 ~~g~~~~~~~~~~---~~~~i---~~~~---~~~~~~~~~~-------~~~~~~----~~i~~~----------~~~g~~ 184 (286)
++|.++...+... ++..+ .+.. +........+ ...... ..+.+. ......
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 150 (268)
T PRK10419 71 WRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP 150 (268)
T ss_pred ECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCc
Confidence 5665543332211 11111 1111 1110000000 001111 112222 122334
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVV 255 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv 255 (286)
.+++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||++++
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i------~~~~d~i~~ 224 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLV------ERFCQRVMV 224 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHH------HHhCCEEEE
Confidence 5678899999999999988887777 6666666666666542 244677778988874 357999999
Q ss_pred CCCCCHH
Q 043263 256 NAEGKLD 262 (286)
Q Consensus 256 ~~~G~i~ 262 (286)
+++|++.
T Consensus 225 l~~G~i~ 231 (268)
T PRK10419 225 MDNGQIV 231 (268)
T ss_pred EECCEEe
Confidence 9888753
No 243
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.71 E-value=6.6e-19 Score=151.53 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=112.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc----
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD---- 139 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~---- 139 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |.+|+ ++|.+
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYP-GEVLGIVGESGSGKSTLLGCLAGRLA------------PDHGTATYIMRSGAEL 70 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEEeccccccc
Confidence 667888998875 68999999998 99999999999999999999999986 55555 44543
Q ss_pred -eeeeCHHHHH----HHh---hccc---h------hhhhee----cc-cccCccHHHHHHH----------HhcCCcEEE
Q 043263 140 -YFFVSKEEFL----QMV---DKNE---L------LEYALV----YG-DYKGIPKKQIREY----------MAKGYDIVL 187 (286)
Q Consensus 140 -~~~~~~~~~~----~~i---~~~~---~------~~~~~~----~~-~~~~~~~~~i~~~----------~~~g~~~v~ 187 (286)
+...+..... ..+ .+.. + .++... .. ..+....+.+.++ +......++
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LS 150 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFS 150 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcC
Confidence 3222222211 111 1111 0 001000 00 0000011122222 122334467
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+|++|++.+|++++.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|.+... ...||+++++++
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~------~~~~d~~~~l~~ 224 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA------RLLAQRLLVMQQ 224 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEEC
Confidence 7899999999999988888888 7777677776666542 234677788988774 357999999998
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 225 G~i 227 (253)
T TIGR02323 225 GRV 227 (253)
T ss_pred CEE
Confidence 875
No 244
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.1e-19 Score=149.88 Aligned_cols=166 Identities=14% Similarity=0.183 Sum_probs=107.7
Q ss_pred HHhHhHHHHhc-----c-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG-----H-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~-----~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++|+++.|+ . .++++++.+.+ |++++|+||||||||||+++|+|++. .+|..|+ ++|.+
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~----------~~~~~G~i~~~g~~ 72 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKP-GTLTALMGESGAGKTTLLDVLAGRKT----------AGVITGEILINGRP 72 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCc----------CCCcceEEEECCEe
Confidence 45677777775 2 68888888888 99999999999999999999999742 0145665 56665
Q ss_pred eeeeCHHHHHHHhhccchhhh-heecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------Ee
Q 043263 140 YFFVSKEEFLQMVDKNELLEY-ALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LA 211 (286)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld 211 (286)
+. ..++..+ .+... ...+ ...+ .+.+.-.... ..+.+|++|++.+|++++.+|+++|+ ||
T Consensus 73 ~~----~~~~~~i---~~~~q~~~~~---~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD 140 (192)
T cd03232 73 LD----KNFQRST---GYVEQQDVHS---PNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140 (192)
T ss_pred hH----HHhhhce---EEecccCccc---cCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence 42 1111111 11000 0000 0111 1111110000 15888999999999999988888888 77
Q ss_pred cCCHHHHHHHHHHh--cCCCHHHHHHHHHH-HHHHhhccCCCcEEEECCC-CCHH
Q 043263 212 AESEMALVERLVER--KTENREELLVRIAT-AREEVQHVKNFDYVVVNAE-GKLD 262 (286)
Q Consensus 212 ~~~~~~l~~rl~~r--~~~t~~~i~~rl~~-~~~~~~~~~~~d~viv~~~-G~i~ 262 (286)
+.+...+.+.+.+. .+.+...++|+++. . ...||+|+++++ |++.
T Consensus 141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~------~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASI------FEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEcCChHHH------HhhCCEEEEEcCCCeEE
Confidence 77777777777653 23466777888763 2 367999999988 7653
No 245
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5e-18 Score=140.24 Aligned_cols=178 Identities=14% Similarity=0.185 Sum_probs=119.6
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..|+++||+..|.+ +|.+++..+.+ |+-.+|+||||||||||++++++.++ |.+|. +.|+.+.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~-ge~W~I~G~NGsGKTTLL~ll~~~~~------------pssg~~~~~G~~~G 96 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNP-GEHWAIVGPNGAGKTTLLSLLTGEHP------------PSSGDVTLLGRRFG 96 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecC-CCcEEEECCCCCCHHHHHHHHhcccC------------CCCCceeeeeeecc
Confidence 45899999999987 89999999999 99999999999999999999999876 43333 3333322
Q ss_pred eeCH-HHHHHHh------hccch-----hhhhee------ccccc-CccHHHHHHH------------HhcCCcEEEEeC
Q 043263 142 FVSK-EEFLQMV------DKNEL-----LEYALV------YGDYK-GIPKKQIREY------------MAKGYDIVLRVD 190 (286)
Q Consensus 142 ~~~~-~~~~~~i------~~~~~-----~~~~~~------~~~~~-~~~~~~i~~~------------~~~g~~~v~~~~ 190 (286)
..+. .++++.+ ....| ..+... .+.++ ..+.++..++ ..+-...++.|+
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge 176 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGE 176 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhH
Confidence 2111 3333332 00111 111111 11122 2333222221 223345667789
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKT----ENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++++-+|||++.+|.++|+ ||....+.+.+++.+... .+...|+|..+.. ...+++++.+.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi------~~~~th~lll~~g~ 250 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI------PPCFTHRLLLKEGE 250 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc------ccccceEEEeeCCc
Confidence 9999999999999999999 788778888888886532 2456678887775 57788998888886
Q ss_pred HH
Q 043263 261 LD 262 (286)
Q Consensus 261 i~ 262 (286)
+.
T Consensus 251 v~ 252 (257)
T COG1119 251 VV 252 (257)
T ss_pred ee
Confidence 53
No 246
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.71 E-value=8.2e-19 Score=165.03 Aligned_cols=176 Identities=17% Similarity=0.206 Sum_probs=115.0
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~ 70 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYP-GRVMALVGENGAGKSTMMKVLTGIYT------------RDAGSILYLGKEVTF 70 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCC
Confidence 3678899999975 78999999998 99999999999999999999999986 56665 56655432
Q ss_pred eCHHHH-HHH---hhcc-------chhhhheeccccc---C-ccH----HHHHHHHh---------cCCcEEEEeCHHHH
Q 043263 143 VSKEEF-LQM---VDKN-------ELLEYALVYGDYK---G-IPK----KQIREYMA---------KGYDIVLRVDIQGA 194 (286)
Q Consensus 143 ~~~~~~-~~~---i~~~-------~~~~~~~~~~~~~---~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v 194 (286)
.+.... +.. +.+. ...++..+....+ + ... +.+.+.+. .....+++|++|++
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 71 NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 222111 110 1111 1122211110000 1 111 12222221 12245667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~------~~~~d~i~~l~~G~i 219 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI------FEICDDVTVFRDGQF 219 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence 999999988888777 7776666776555542 233667779988875 368999999998875
No 247
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.7e-18 Score=150.18 Aligned_cols=178 Identities=20% Similarity=0.188 Sum_probs=112.2
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|+++.... .|..|+ ++|.++..
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-------~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPR-GKVTALIGPSGCGKSTVLRSLNRMNDLIEG-------CSLKGRVLFDGTDLYD 84 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEccc
Confidence 4788999999975 79999999998 999999999999999999999998641000 023444 45544321
Q ss_pred --eCHHHHHHHh---hcc------chhhhheecccccCcc---HHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263 143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGIP---KKQIREY-------------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~---~~~i~~~-------------~~~g~~~v~~~~~q~v~ 195 (286)
.+...++..+ .+. ...++..+.....+.. .+.+.++ +......+++|++|++.
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 1122222211 111 1122221111111111 1112221 12222446678999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+++++++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~ 228 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQA------VRVSDMTAFFNA 228 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEec
Confidence 99999988888888 77776777777776542 23566778988765 478999999986
No 248
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.4e-18 Score=149.72 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=114.2
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC----
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN---- 136 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~---- 136 (286)
...+.++++++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~iaG~~~------------~~~G~v~~~G~~~ 74 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPN-NSIFGIMGPSGSGKSTLLKVLNRLIE------------IYDSKIKVDGKVL 74 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCcCceeEcCEEE
Confidence 456889999999987 79999999998 99999999999999999999999976 44443 22
Q ss_pred --CcceeeeCHHHHHHHh----hccch------hhhheecccccCc-cHH----HHHHHHh-------------cCCcEE
Q 043263 137 --GKDYFFVSKEEFLQMV----DKNEL------LEYALVYGDYKGI-PKK----QIREYMA-------------KGYDIV 186 (286)
Q Consensus 137 --g~~~~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~-~~~----~i~~~~~-------------~g~~~v 186 (286)
|.+........++..+ ++..+ .++..+.....+. ..+ .+.++++ .....+
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 154 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL 154 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence 2332212222222211 11111 1111110000011 111 1122211 122345
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
.+|++|+++++++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+.+.. ...||+++++++|
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~------~~~~d~v~~l~~g 228 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV------ARVADYVAFLYNG 228 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH------HHhCCEEEEEECC
Confidence 56888999999999988888888 77777777777776542 34667778988874 3689999999888
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 229 ~i 230 (257)
T PRK14246 229 EL 230 (257)
T ss_pred EE
Confidence 65
No 249
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.5e-18 Score=148.95 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=112.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF- 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~- 142 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++.... .|..|+ ++|.++..
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPA-RQVTALIGPSGCGKSTLLRCLNRMNDLIEG-------VKITGKLTMDGEDIYGN 75 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecC-CCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEEcccc
Confidence 567888988875 79999999998 999999999999999999999998752100 012444 45544321
Q ss_pred eCHHHHHHHh----hccc-----hhhhheecccccCcc-H----HHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263 143 VSKEEFLQMV----DKNE-----LLEYALVYGDYKGIP-K----KQIREY-------------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~~~~~i----~~~~-----~~~~~~~~~~~~~~~-~----~~i~~~-------------~~~g~~~v~~~~~q~v~ 195 (286)
.+...++..+ ++.. ..++..+....++.. . +.+.+. +......+++|+.|++.
T Consensus 76 ~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred cchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 1111222111 1111 111111100011111 1 111111 22233456778999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++.
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQA------RRISDRTAFFLMGELV 223 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHH------HHhCCEEEEEECCEEE
Confidence 99999988888777 66666667766666532 23666778988774 3679999999988763
No 250
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.71 E-value=2.8e-19 Score=160.77 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=107.2
Q ss_pred hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH---
Q 043263 72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK--- 145 (286)
Q Consensus 72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~--- 145 (286)
||++.|+. .+ ++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++.....
T Consensus 4 ~l~~~~~~~~~-~isl~i~~-Gei~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~i~~~~~~~~ 69 (354)
T TIGR02142 4 RFSKRLGDFSL-DADFTLPG-QGVTAIFGRSGSGKTTLIRLIAGLTR------------PDEGEIVLNGRTLFDSRKGIF 69 (354)
T ss_pred EEEEEECCEEE-EEEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECccCccccc
Confidence 45666764 34 77888887 99999999999999999999999986 55555 45554321100
Q ss_pred -HHHHHH---h-hccchhhhheecccc------cCc-c-HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 146 -EEFLQM---V-DKNELLEYALVYGDY------KGI-P-KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 146 -~~~~~~---i-~~~~~~~~~~~~~~~------~~~-~-~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
...+.. + ++..+..+..+..++ ... . .+.+.+. +......+++|++|++++||+++.+
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 011110 1 111111111111111 000 0 1112222 2223345778999999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~------~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV------LRLADRVVVLEDGRV 210 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence 888888 7777777777766542 234677789988875 367999999999875
No 251
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=1.1e-18 Score=181.39 Aligned_cols=169 Identities=13% Similarity=0.185 Sum_probs=116.3
Q ss_pred HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC--Ccc
Q 043263 67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN--GKD 139 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~--g~~ 139 (286)
.++++|++|.|+. .|+++++.+++ |+.++|+|++|||||||+++|.|+++ |.+|.+. ...
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~------------~~~G~i~~~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPV-GSLVAIVGGTGEGKTSLISAMLGELS------------HAETSSVVIRGS 680 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCc------------ccCCCEEEecCc
Confidence 5889999999963 69999999998 99999999999999999999999987 4444310 111
Q ss_pred eeeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCCcE--------EEEeCHHHHHHHHH
Q 043263 140 YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGYDI--------VLRVDIQGARTLRR 199 (286)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~~~--------v~~~~~q~v~iara 199 (286)
+..++++.+ +.++.+.+|. .+++. .+.+.+. +.+++|.++ ++|||+||+++|||
T Consensus 681 Iayv~Q~p~---Lf~gTIreNI-~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 681 VAYVPQVSW---IFNATVRENI-LFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754 (1495)
T ss_pred EEEEcCccc---cccccHHHHh-hcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence 222222110 1122222322 22221 1222221 224555555 44689999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|+++|| ||+.++..+.+++.. ..+.|...++|+++. ...||+|+++++|++
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~-------l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF-------LPLMDRIILVSEGMI 817 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh-------HHhCCEEEEEeCCEE
Confidence 9999999999 787777767666433 234588888999987 578999999999875
No 252
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.4e-18 Score=138.94 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=116.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+..+|+.++|+. +++++++.+.+ |++|||+||||+||||...++.|+.. |++|. ++|.|+..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~-GEiVGLLGPNGAGKTT~Fymi~Glv~------------~d~G~i~ld~~diT~l 71 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNS-GEIVGLLGPNGAGKTTTFYMIVGLVR------------PDSGKILLDDEDITKL 71 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcC-CcEEEEECCCCCCceeEEEEEEEEEe------------cCCceEEECCcccccC
Confidence 567899999997 89999999998 99999999999999999999999976 88887 788888766
Q ss_pred CHHHHHHH-----hhccchhhhheeccccc------Ccc------HHHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263 144 SKEEFLQM-----VDKNELLEYALVYGDYK------GIP------KKQIREY---------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 144 ~~~~~~~~-----i~~~~~~~~~~~~~~~~------~~~------~~~i~~~---------~~~g~~~v~~~~~q~v~ia 197 (286)
+...-..+ .+....+....+..|+. ..+ ...+.+. .......+++|++.|+.+|
T Consensus 72 Pm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred ChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 54332221 12222332333333321 101 1111111 2334567889999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++..+|.+++| +||-+...+++- |+.++ ....+-.|-.... +..||+.+++.+|++
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg-iGvLITDHNVREt------L~i~dRaYIi~~G~v 217 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG-IGVLITDHNVRET------LDICDRAYIISDGKV 217 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC-ceEEEccccHHHH------HhhhheEEEEecCeE
Confidence 999988888777 777666555443 44442 2333334544443 578999988877754
No 253
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.2e-18 Score=150.40 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=112.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++..... .|.+|+ ++|.++..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~-------~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEP-RSVTAFIGPSGCGKSTVLRTLNRMHEVIPG-------ARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcccC-------CCcceEEEECCEeccc
Confidence 3678899999975 78999999998 999999999999999999999998741000 013454 45544321
Q ss_pred --eCHHHHHHHh----hcc------chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263 143 --VSKEEFLQMV----DKN------ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 143 --~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q 192 (286)
.....++..+ ++. ...++.......++. .. +.+.++ .......+++|++|
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 1111111111 111 112221110001111 11 111221 22233456778999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC------CC
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA------EG 259 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~------~G 259 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+|++++ +|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~------~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQA------ARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEecccCCCCc
Confidence 99999999988888888 77776777777766532 23666778988874 36899998885 67
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 230 ~i 231 (258)
T PRK14241 230 RL 231 (258)
T ss_pred eE
Confidence 65
No 254
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.8e-19 Score=165.20 Aligned_cols=175 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYP-GEIHALLGENGAGKSTLMKVLSGIHE------------PTKGTITINNINYNK 71 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCcC------------CCccEEEECCEECCC
Confidence 3678899999975 78999999998 99999999999999999999999986 55665 56655533
Q ss_pred eCHHHHHH-H---hhcc-------chhhhheeccc-----ccCc---cH----HHHHHHHh---------cCCcEEEEeC
Q 043263 143 VSKEEFLQ-M---VDKN-------ELLEYALVYGD-----YKGI---PK----KQIREYMA---------KGYDIVLRVD 190 (286)
Q Consensus 143 ~~~~~~~~-~---i~~~-------~~~~~~~~~~~-----~~~~---~~----~~i~~~~~---------~g~~~v~~~~ 190 (286)
.+...... . +.+. ...++.. ++. .++. .. +.+.+.+. .....+++|+
T Consensus 72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (510)
T PRK09700 72 LDHKLAAQLGIGIIYQELSVIDELTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISH 150 (510)
T ss_pred CCHHHHHHCCeEEEeecccccCCCcHHHHhh-hccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 33222111 0 1111 1112211 110 0111 11 12222322 1223566789
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~------~~~~d~v~~l~~G~i 223 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI------RRICDRYTVMKDGSS 223 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999999988888888 7777677776666543 234677789988875 367999999988865
No 255
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.71 E-value=8.4e-19 Score=149.43 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=111.0
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE 146 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~ 146 (286)
+++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+. ++|.++......
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~----------i~g~~~~~~~~~ 70 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPT-GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR----------LNGQDATRVHAR 70 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------ECCEEcCcCChh
Confidence 45677777765 78899999988 999999999999999999999999863333222 344332211110
Q ss_pred H--H------HHHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 147 E--F------LQMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 147 ~--~------~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
. + ...+......++..+....++.. .+.+.++ .......+++|+.|++.++++++.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 0 00111111122211110111111 1122222 222234566789999999999999998
Q ss_pred EEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.|.+.. +.+...++|++... .+.||+++++++|.+
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~------~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA------MEVADRIVVMSNGKI 209 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCEEEEEECCEE
Confidence 8888 88887888877776531 34677778988864 367999999988875
No 256
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-18 Score=150.03 Aligned_cols=180 Identities=15% Similarity=0.157 Sum_probs=111.0
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF- 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~- 142 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... ...+|+ ++|.++..
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQR-GTVNALIGPSGCGKTTFLRAINRMHDLTPG-------ARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCcC-------CCCceeEEECCEEcccC
Confidence 567888888875 79999999998 999999999999999999999998751100 001344 44443321
Q ss_pred -eCHHHHHHHh----hcc------chhhhheecccccCc-cHH----HHHH-------------HHhcCCcEEEEeCHHH
Q 043263 143 -VSKEEFLQMV----DKN------ELLEYALVYGDYKGI-PKK----QIRE-------------YMAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 -~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~-~~~----~i~~-------------~~~~g~~~v~~~~~q~ 193 (286)
.....++..+ ++. .+.++........+. ..+ .+.+ ........+++|++|+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 0111111111 111 111211110000010 111 1111 1122234566789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+|+++++|++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 225 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQA------ARVSDTTSFFLVGDL 225 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999989988888 77777777777776542 23566678988874 357999999998875
No 257
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=2.1e-18 Score=143.62 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=103.7
Q ss_pred HhHhHHHHhc-------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 69 LLRSLEASLG-------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 69 ~~~~v~~~~~-------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
+++||++.|+ ..++++++.+.+ |++++|+||||||||||+++|+|+++ |.+|+ ++| .
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~-G~~~~i~G~nG~GKSTLl~~i~G~~~------------~~~G~i~~~g-~ 67 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPK-GELVAIVGPVGSGKSSLLSALLGELE------------KLSGSVSVPG-S 67 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCcCC------------CCCCeEEEcC-E
Confidence 3566777774 267888888888 99999999999999999999999986 66666 455 2
Q ss_pred eeeeCHHHHHHHhhccchhhhheecccccCccHHHH------HHHH-----------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263 140 YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQI------REYM-----------AKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i------~~~~-----------~~g~~~v~~~~~q~v~iaral~~ 202 (286)
+.++..... .+ .....++..+............ .+.+ ......+++|++|++.+||+++.
T Consensus 68 i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 322222110 01 1122222221111000000000 0111 11224466789999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHH-HHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 203 DSAVFVF------LAAESEMALVERL-VER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl-~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
+|+++|+ ||+.+.+.+.+.+ .+. .+.+...++|++... ..||+++++++|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~-------~~~d~i~~l~~G~ 204 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL-------PHADQIVVLDNGR 204 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH-------hhCCEEEEEeCCC
Confidence 8888888 7776555565543 322 234667778988774 3499999998774
No 258
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.71 E-value=2.2e-18 Score=146.19 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=102.2
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhc----
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDK---- 154 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~---- 154 (286)
++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++...+... ..+.+
T Consensus 1 l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~~--~~v~q~~~l 65 (230)
T TIGR01184 1 LKGVNLTIQQ-GEFISLIGHSGCGKSTLLNLISGLAQ------------PTSGGVILEGKQITEPGPDR--MVVFQNYSL 65 (230)
T ss_pred CCceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCCCChhh--eEEecCccc
Confidence 3566777776 99999999999999999999999986 55555 4554432111110 11111
Q ss_pred ---cchhhhheec-cc-ccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------E
Q 043263 155 ---NELLEYALVY-GD-YKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------L 210 (286)
Q Consensus 155 ---~~~~~~~~~~-~~-~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------l 210 (286)
....++.... .. ...... +.+.+. +......+++|++|++.+|++++.+|+++|+ |
T Consensus 66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 145 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGAL 145 (230)
T ss_pred CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 1112221110 00 011111 112222 2233345778999999999999988888888 7
Q ss_pred ecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 211 AAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 211 d~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
|+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++..
T Consensus 146 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA------LLLSDRVVMLTNGPAAN 195 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEeCCcEec
Confidence 777777777777653 234677789988864 36799999999887643
No 259
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.71 E-value=1.1e-18 Score=150.18 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=111.2
Q ss_pred HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++... .++.|+ ++|.++....
T Consensus 5 l~~~~l~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--------~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 5 IELRNIALQAAQPLVHGVSLTLQR-GRVLALVGGSGSGKSLTCAAALGILPAGV--------RQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEeCeEEEeccceecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCC--------CCcCCEEEECCeeccccc
Confidence 667888888843 78999999998 99999999999999999999999976200 014554 4554432100
Q ss_pred HHHHHH---Hhhccc---hh------hhheecccccCc--cHHHHHHH------------HhcCCcEEEEeCHHHHHHHH
Q 043263 145 KEEFLQ---MVDKNE---LL------EYALVYGDYKGI--PKKQIREY------------MAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 145 ~~~~~~---~i~~~~---~~------~~~~~~~~~~~~--~~~~i~~~------------~~~g~~~v~~~~~q~v~iar 198 (286)
.... .+.+.. +. ++........+. ..+.+.+. +......+++|+.|++.+|+
T Consensus 76 --~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 --LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred --cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 0000 011110 10 110000000111 11122222 12333557789999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~------~~~~d~v~~l~~G~i 219 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV------ARLADDVAVMSHGRI 219 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99988888888 7777666776666543 234667778988874 367999999988865
No 260
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=1.8e-18 Score=144.10 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=105.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~v~~~g~~~~~~ 68 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNA-GELVQIEGPNGAGKTSLLRILAGLAR------------PDAGEVLWQGEPIRRQ 68 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEcccc
Confidence 346778888865 78999999998 99999999999999999999999986 55665 555544321
Q ss_pred CHHHHHHHh----hcc------chhhhheecccccC-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 144 SKEEFLQMV----DKN------ELLEYALVYGDYKG-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 144 ~~~~~~~~i----~~~------~~~~~~~~~~~~~~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
.. .+...+ ++. ...++.......++ ...+.+.++ .......+++|++|++.+|++++.+
T Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 69 RD-EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hH-HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 11 111111 111 11122111111111 111222222 2223345778899999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 204 SAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
|+++|+ ||+.+.+.+.+.|.+. .+.+...++|++... ....+++++.
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i------~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV------ASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh------ccCCceEEec
Confidence 888888 7776677776666543 233667778887773 2445566655
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.5e-19 Score=146.92 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=107.0
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++||+|.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++.. .|..|+ ++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------~~~~G~i~i~g~~ 73 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKP-GEMVLVLGRPGSGCSTLLKALANRTEGN---------VSVEGDIHYNGIP 73 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECC-CcEEEEECCCCCCHHHHHHHhcccCCCC---------CCcceEEEECCEE
Confidence 356788888852 68899999998 9999999999999999999999987410 034554 56655
Q ss_pred eeeeCHHHHHHHh---h-ccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------
Q 043263 140 YFFVSKEEFLQMV---D-KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------ 209 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ 209 (286)
+..... ..+..+ . +..+.....+..++... . .. ........+.+|++|++.+|++++.+|+++|+
T Consensus 74 ~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~-~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~ 148 (202)
T cd03233 74 YKEFAE-KYPGEIIYVSEEDVHFPTLTVRETLDFA-L-RC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRG 148 (202)
T ss_pred Cccchh-hhcceEEEEecccccCCCCcHHHHHhhh-h-hh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCcc
Confidence 432211 111111 1 11111111111111000 0 00 02223345678999999999999989988888
Q ss_pred EecCCHHHHHHHHHHhc---CCCHHHH-HHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 LAAESEMALVERLVERK---TENREEL-LVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ld~~~~~~l~~rl~~r~---~~t~~~i-~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.+.+.. +.+...+ .|..+.. ...||+++++++|++
T Consensus 149 LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~------~~~~d~i~~l~~G~i 198 (202)
T cd03233 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI------YDLFDKVLVLYEGRQ 198 (202)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH------HHhCCeEEEEECCEE
Confidence 77777777777766532 2233333 4444442 367999999999875
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.4e-18 Score=149.26 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=111.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF- 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~- 142 (286)
+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .+..|+ ++|.++..
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEE-NQVTALIGPSGCGKSTFLRTLNRMNDLIPS-------VKIEGEVLLDGQDIYKS 75 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEcccc
Confidence 567888888865 78999999998 999999999999999999999997531000 012343 44544321
Q ss_pred -eCHHHHHHHh---hcc------chhhhheecccccCc-----cHHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263 143 -VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-----PKKQIREY-------------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 143 -~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-----~~~~i~~~-------------~~~g~~~v~~~~~q~v 194 (286)
.....++..+ .+. ...++..+.....+. ..+.+.+. .......+++|++|++
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 0111111111 111 111111111001111 01111111 2233345778899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~v~~l~~G~i 223 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQA------SRISDKTAFFLNGEI 223 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH------HhhCCEEEEEECCEE
Confidence 999999988888888 77777777767666532 33666778988764 367999999998876
No 263
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=8.7e-18 Score=140.85 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=117.1
Q ss_pred HHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee------eCH
Q 043263 74 EASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF------VSK 145 (286)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~------~~~ 145 (286)
...+|.-.-+.++..+. ..+.+|.|+|||||||++|+++|+.. |++|. ++|.-+.+ ++.
T Consensus 7 ~~~lG~~~l~a~~~~p~-~GvTAlFG~SGsGKTslin~IaGL~r------------PdeG~I~lngr~L~Ds~k~i~lp~ 73 (352)
T COG4148 7 RQRLGNFALDANFTLPA-RGITALFGPSGSGKTSLINMIAGLTR------------PDEGRIELNGRVLVDAEKGIFLPP 73 (352)
T ss_pred hhhcCceEEEEeccCCC-CceEEEecCCCCChhhHHHHHhccCC------------ccccEEEECCEEeecccCCcccCh
Confidence 34455434455667765 57899999999999999999999986 77776 55654332 222
Q ss_pred H--HHHHHhhccchhhhheecccc-cCc---cHHHH---------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 146 E--EFLQMVDKNELLEYALVYGDY-KGI---PKKQI---------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 146 ~--~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~i---------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
+ .+...+++..++.+..+.+|+ |+. ....+ ...+..-..++++|++||++|.||++..|.++++
T Consensus 74 ~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred hhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 2 223344666677777777774 332 12222 2235666788999999999999999988888777
Q ss_pred -----EecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -----LAAESEMALV---ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||.+-+.+++ +||.+.-+..+.-++|-++.. .+.||+|+++++|++
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev------~RLAd~vV~le~GkV 207 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV------LRLADRVVVLENGKV 207 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH------HhhhheEEEecCCeE
Confidence 6766555554 566555444555668877765 589999999999976
No 264
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=2e-17 Score=130.36 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=114.9
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
..+++.|+.++||. .|..+++.-.. |.+|.|+|.|||||||+++|+.=+-. |..|. ++|+.+.
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~-GdVisIIGsSGSGKSTfLRCiN~LE~------------P~~G~I~v~geei~ 71 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSAGSIRVNGEEIR 71 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCC-CCEEEEecCCCCchhHHHHHHHhhcC------------CCCceEEECCeEEE
Confidence 35889999999997 89999999887 99999999999999999999986544 55555 4455433
Q ss_pred ----------eeCHHHHHHHh-------hccchhhhheeccc-------ccCccHHH-HHHH---H---------hcCCc
Q 043263 142 ----------FVSKEEFLQMV-------DKNELLEYALVYGD-------YKGIPKKQ-IREY---M---------AKGYD 184 (286)
Q Consensus 142 ----------~~~~~~~~~~i-------~~~~~~~~~~~~~~-------~~~~~~~~-i~~~---~---------~~g~~ 184 (286)
..+..++..+. +.-.+..+.++..| ..+.++.+ ++.+ + .....
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~ 151 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA 151 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence 22444443332 22122222222222 22333322 2222 1 12234
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
.+++|+.||++|||++.-.|.+++| |||.-...+.+-+.+. .+.|...++|.+..++ ..+.+|+.+
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR------~Vss~v~fL 225 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR------DVSSHVIFL 225 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH------hhhhheEEe
Confidence 5678999999999999988888888 5554333443433332 2347777899888763 567778878
Q ss_pred CCCCHHH
Q 043263 257 AEGKLDS 263 (286)
Q Consensus 257 ~~G~i~~ 263 (286)
.+|.++|
T Consensus 226 h~G~iEE 232 (256)
T COG4598 226 HQGKIEE 232 (256)
T ss_pred ecceecc
Confidence 7777655
No 265
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-18 Score=148.04 Aligned_cols=180 Identities=18% Similarity=0.159 Sum_probs=118.1
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||+..|.. +++++++.+.+ |+++||+|.|||||||+++.|.++++..... ...|+ ++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~-GE~lgiVGESGsGKS~~~~aim~llp~~~~~-------i~~G~i~f~g~~ 73 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKK-GEILGIVGESGSGKSVLAKAIMGLLPKPNAR-------IVGGEILFDGKD 73 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcC-CcEEEEEcCCCCCHHHHHHHHHhccCCCCCe-------EeeeEEEECCcc
Confidence 345677776643 68899999998 9999999999999999999999998621111 11344 66777
Q ss_pred eeeeCHHHHHHH-------hhccch-------------hhhheecccccCccHH----HH------------HHHHhcCC
Q 043263 140 YFFVSKEEFLQM-------VDKNEL-------------LEYALVYGDYKGIPKK----QI------------REYMAKGY 183 (286)
Q Consensus 140 ~~~~~~~~~~~~-------i~~~~~-------------~~~~~~~~~~~~~~~~----~i------------~~~~~~g~ 183 (286)
+..++.++++.. +.|+.. .+-...+... ...+ .+ ++.+..-.
T Consensus 74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~--~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--LSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 766666644332 222211 1111111110 0111 11 11234445
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
.-++||.+||+.+|-++..+|+++|. ||+.....+.+.|++ ..+.+...|+|++... ...||+|.
T Consensus 152 helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv------a~~aDri~ 225 (316)
T COG0444 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV------AEIADRVA 225 (316)
T ss_pred cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcceEE
Confidence 67889999999999999988888777 666555555555543 2344778889999976 58999999
Q ss_pred ECCCCCHHH
Q 043263 255 VNAEGKLDS 263 (286)
Q Consensus 255 v~~~G~i~~ 263 (286)
|+..|++.|
T Consensus 226 VMYaG~iVE 234 (316)
T COG0444 226 VMYAGRIVE 234 (316)
T ss_pred EEECcEEEE
Confidence 999997644
No 266
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.7e-18 Score=148.73 Aligned_cols=181 Identities=22% Similarity=0.199 Sum_probs=113.0
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+..... ..+.+|+ ++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-------~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYE-NKITALIGPSGCGKSTFLRCLNRMNDLIS-------NVKIEGEVLLDGKNIYD 75 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCccc-------CCCCccEEEECCEeccc
Confidence 3567888888864 78999999998 99999999999999999999999864100 0013454 45554421
Q ss_pred e--CHHHHHHHh----hcc-----chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q~ 193 (286)
. ....++..+ ++. ...++..+....++. .. +.+.++ .......+++|++|+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1 111111111 111 112222111111111 11 111111 223345567789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.++++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~------~~~~d~v~~l~~G~i 224 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA------SRVSDYTAFFLMGDL 224 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH------HHhcCEEEEEECCeE
Confidence 9999999988888888 77776777777666532 34666778988764 367999999998875
No 267
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=1.4e-18 Score=140.73 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=95.1
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
.||++.|+. .+.+ .+.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.+..+
T Consensus 4 ~~l~~~~~~~~~l~~-~~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~~q- 68 (177)
T cd03222 4 PDCVKRYGVFFLLVE-LGVVKE-GEVIGIVGPNGTGKTTAVKILAGQLI------------PNGDNDEWDGITPVYKPQ- 68 (177)
T ss_pred CCeEEEECCEEEEcc-CcEECC-CCEEEEECCCCChHHHHHHHHHcCCC------------CCCcEEEECCEEEEEEcc-
Confidence 466777765 4555 466776 99999999999999999999999986 77776 45543322110
Q ss_pred HHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE 220 (286)
Q Consensus 147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~ 220 (286)
.. .+++|++|++.+|++++.+|+++++ ||+.+...+.+
T Consensus 69 -------------------~~-----------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~ 112 (177)
T cd03222 69 -------------------YI-----------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR 112 (177)
T ss_pred -------------------cC-----------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 00 0778999999999999988877777 66655555655
Q ss_pred HHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 221 RLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 221 rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.+.+. ++.+...++|++... ...||++++++++.
T Consensus 113 ~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~~~ 149 (177)
T cd03222 113 AIRRLSEEGKKTALVVEHDLAVL------DYLSDRIHVFEGEP 149 (177)
T ss_pred HHHHHHHcCCCEEEEEECCHHHH------HHhCCEEEEEcCCC
Confidence 55542 224667778988774 35799999888663
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.1e-18 Score=164.29 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=116.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++.. |.+|+ ++|.++..
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----------~~~G~i~~~g~~~~~ 73 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRA-GEIVSLCGENGAGKSTLMKVLSGVYPHG----------TYEGEIIFEGEELQA 73 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCC----------CCCeEEEECCEECCC
Confidence 3778899999975 79999999998 9999999999999999999999987510 14565 56655433
Q ss_pred eCHHHH-HHH---hhcc-------chhhhheeccccc--C-ccH----HHHHHHHh---------cCCcEEEEeCHHHHH
Q 043263 143 VSKEEF-LQM---VDKN-------ELLEYALVYGDYK--G-IPK----KQIREYMA---------KGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~~~-~~~---i~~~-------~~~~~~~~~~~~~--~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v~ 195 (286)
.+.... +.. +.+. ...++..+....+ + ... +.+.+++. .....+++|++||++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 74 SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 222211 111 1111 1122211111010 1 111 12233322 122356678999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~------~~~~d~v~~l~~G~i 221 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV------KAISDTICVIRDGRH 221 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH------HHhcCEEEEEECCEE
Confidence 99999988888888 7777777777766553 234677789988875 367999999998875
No 269
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.5e-18 Score=149.16 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=112.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++.... .+..|+ ++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPE-RQITAIIGPSGCGKSTLLRALNRMNDIVSG-------ARLEGAVLLDNENIYS 75 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCcccc-------CCcccEEEECCEEccc
Confidence 3667888888875 78999999998 999999999999999999999998762210 011344 44443321
Q ss_pred e--CHHHHHHHh----hcc-----chhhhheecccccCcc-----HHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGIP-----KKQIRE-------------YMAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~-----~~~i~~-------------~~~~g~~~v~~~~~q~ 193 (286)
. +...++..+ ++. ...++..+.....+.. .+.+.. .+......+.+|++|+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred cccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 0 111111111 111 1122211111111111 111111 1233344577889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.++|+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|.+
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~------~~~~d~i~~l~~G~i 224 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQA------ARASDWTGFLLTGDL 224 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhCCEEEEEeCCeE
Confidence 9999999988888888 77766766666665432 34667779988875 467999999988875
No 270
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-18 Score=150.85 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=113.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++.... ..|..|+ ++|.++..
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEK-HAVTALIGPSGCGKSTFLRSINRMNDLIP-------SARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccccC-------CCCCceEEEECCEEccc
Confidence 4788999999975 79999999998 99999999999999999999999752000 0023343 44443321
Q ss_pred e--CHHHHHHHh----hcc-----chhhhheecccccCc-----cHHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-----PKKQIRE-------------YMAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-----~~~~i~~-------------~~~~g~~~v~~~~~q~ 193 (286)
. ....++..+ ++. ...++....-..... ..+.+.+ .+......+++|++|+
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 1 111111111 111 111111100000000 0111111 1233345577889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~v~~l~~G~i 241 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQA------LRVSDRTAFFLNGDL 241 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888888 78777777777776542 23666778988864 368999999998875
No 271
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-18 Score=148.68 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=111.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++.... .|..|+ ++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-------~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFK-NQITAIIGPSGCGKTTLLRSINRMNDHIPG-------FRVEGKIYFKGQDIYDP 75 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecC-CCEEEEECCCCCCHHHHHHHHhccccCCCC-------CCcceEEEECCEEcccc
Confidence 567888888874 68999999998 999999999999999999999998641000 013444 445433211
Q ss_pred C--HHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263 144 S--KEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 144 ~--~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~v 194 (286)
+ ....+..+ ++. ...++..+....++. . .+.+.++ .......+++|++|++
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 0 11111111 111 111211110001111 1 1111111 2223345677899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~------~~~~d~i~~l~~G~i 223 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQA------IRIADYIAFMYRGEL 223 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888888 77777777777776532 23566778988864 367999999988875
No 272
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-18 Score=151.45 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=113.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++...++ .|..|+ ++|.++..
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPA-RAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-------YRYSGDVLLGGRSIFN 92 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcCCC-------CCCceEEEECCEEccc
Confidence 4788999999976 78999999998 999999999999999999999998752100 013444 44543321
Q ss_pred eC-HHHHHHHh---hcc------chhhhheecccccC-ccHHHH----HHH-------------HhcCCcEEEEeCHHHH
Q 043263 143 VS-KEEFLQMV---DKN------ELLEYALVYGDYKG-IPKKQI----REY-------------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 143 ~~-~~~~~~~i---~~~------~~~~~~~~~~~~~~-~~~~~i----~~~-------------~~~g~~~v~~~~~q~v 194 (286)
.. ...++..+ .+. ...++......... ...+.. .+. +......+++|++|++
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 11 11111111 111 11111111000000 111111 111 1223345677899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+||+++.+|+++|+ ||+.+...+.+.|.+.. ..+...++|++... ...||+++++++|++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~------~~~~dri~~l~~G~i 240 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQA------ARISDRAALFFDGRL 240 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888877 77766777777666542 23666778988764 367999999998865
No 273
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=7.4e-18 Score=140.85 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=110.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-----
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----- 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----- 152 (286)
+++++++.+|+ |++++++|+|||||||++|+|.|++. |.+|. +.|.+-.. .++++...+
T Consensus 39 AVqdisf~IP~-G~ivgflGaNGAGKSTtLKmLTGll~------------p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~g 104 (325)
T COG4586 39 AVQDISFEIPK-GEIVGFLGANGAGKSTTLKMLTGLLL------------PTSGKVRVNGKDPFR-RREEYLRSIGLVMG 104 (325)
T ss_pred hhheeeeecCC-CcEEEEEcCCCCcchhhHHHHhCccc------------cCCCeEEecCcCcch-hHHHHHHHHHHHhh
Confidence 67888888888 99999999999999999999999986 77777 67775532 333332221
Q ss_pred hcc------chhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263 153 DKN------ELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213 (286)
Q Consensus 153 ~~~------~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~ 213 (286)
+.. ...+...+...+|.++.+...+. +...-..++.|++.++.+|.+++ .++.++|||.|
T Consensus 105 qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL-h~p~VLfLDEp 183 (325)
T COG4586 105 QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL-HPPKVLFLDEP 183 (325)
T ss_pred hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc-CCCcEEEecCC
Confidence 111 11222333334555555444333 22222346678999999999999 55556665555
Q ss_pred C-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH--HHHHHHHHHHHHH
Q 043263 214 S-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL--DSAVKLVESVIDA 274 (286)
Q Consensus 214 ~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i--~~~~~~l~~~i~~ 274 (286)
+ ...+.+-+++. .+.|+...+|.++.. ...||+|+.++.|++ +..+.++.+.+..
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di------~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI------ATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH------HHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 4 44454445432 222444447877765 478999999999975 4455666555443
No 274
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.8e-18 Score=149.98 Aligned_cols=181 Identities=20% Similarity=0.184 Sum_probs=113.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++.... -.|..|+ ++|.++..
T Consensus 20 ~l~~~nl~~~~~~~~il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 20 ALSTKDLHVYYGKKEAIKGIDMQFEK-NKITALIGPSGSGKSTYLRSLNRMNDTID-------IARVTGQILYRGIDINR 91 (267)
T ss_pred EEEEeeEEEEECCeeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCccC-------CCCcceEEEECCEEccc
Confidence 4788999999975 79999999998 99999999999999999999999874100 0023454 45544321
Q ss_pred e--CHHHHHHHh---hcc------chhhhheecccccCc-cH----HHHHH-------------HHhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-PK----KQIRE-------------YMAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~~----~~i~~-------------~~~~g~~~v~~~~~q~ 193 (286)
. .....+..+ .+. ...++........+. .. +.+.+ .+......+++|++|+
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 0 111111111 111 111221110000111 11 11111 1223334567789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i 240 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA------ARASDYTAFFYLGDL 240 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence 9999999988888877 66666677777666542 23566668988764 368999999998875
No 275
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.6e-18 Score=149.01 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=111.5
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|.++...
T Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-------~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGISLDFEE-KELTALIGPSGCGKSTFLRCLNRMNDDIEN-------IKITGEIKFEGQNIYGS 76 (251)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhhccccccC-------CCcceEEEECCEEcccc
Confidence 667899999975 78999999998 999999999999999999999998741000 012333 444433210
Q ss_pred --CHHHHHHHh----hcc-----chhhhheecccccCcc-----HHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263 144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGIP-----KKQIREY-------------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~-----~~~i~~~-------------~~~g~~~v~~~~~q~v 194 (286)
....++..+ ++. ...++.......++.. .+.+.++ +......+++|++|++
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 111111111 111 1112111100001110 1111111 1222345667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~G~i 224 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA------GRISDQTAFLMNGDL 224 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHH------HhhcCEEEEEECCEE
Confidence 999999988888888 77777777777776542 34667778988874 367999999988875
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-18 Score=149.92 Aligned_cols=178 Identities=14% Similarity=0.089 Sum_probs=112.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|+++.. +.+ +..|+ ++|.++..
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-g~i------~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQ-SKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV------RVEGRVEFFNQNIYE 78 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCC-CCc------cccceEEECCEEhhc
Confidence 4778999999975 78999999998 9999999999999999999999997521 000 01333 44443311
Q ss_pred --eCHHHHHHHh----hc-----cchhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263 143 --VSKEEFLQMV----DK-----NELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 --~~~~~~~~~i----~~-----~~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~ 193 (286)
.+...++..+ +. ....++........+. . .+.+.++ .......+.+|+.|+
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 0111111111 11 1111111110000011 1 1112211 122334577889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i------~~~~d~i~~l~~ 226 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV------SRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhcCEEEEEcc
Confidence 9999999988888888 7777777777777652 244667778988875 478999999998
No 277
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=2e-18 Score=179.92 Aligned_cols=168 Identities=14% Similarity=0.240 Sum_probs=115.1
Q ss_pred HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC-CC--cCCc
Q 043263 67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP-GE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~-G~--~~g~ 138 (286)
.++++|++|.|+. .|+++++.+++ |+.++|+||+|||||||+++|.|.++ |.+ |+ +.|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~------------~~~GG~I~l~~- 679 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPV-GSLVAIVGSTGEGKTSLISAMLGELP------------PRSDASVVIRG- 679 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecC-CCEEEEECCCCCCHHHHHHHHHHhhc------------cCCCceEEEcC-
Confidence 5899999999963 59999999998 99999999999999999999999987 444 44 111
Q ss_pred ceeeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCCcE--------EEEeCHHHHHHHH
Q 043263 139 DYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGYDI--------VLRVDIQGARTLR 198 (286)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~~~--------v~~~~~q~v~iar 198 (286)
.+.+++++.+ +.++.+.+|. .++..+ +.+.+. +.+++|.++ ++|||+||+++||
T Consensus 680 ~Iayv~Q~p~---LfngTIreNI-~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 680 TVAYVPQVSW---IFNATVRDNI-LFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred eEEEEcCccc---cCCCCHHHHH-hCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 1222222210 1122222222 222211 122111 123445444 4568999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHH-HH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERL-VE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl-~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+++++|| ||+.++..+.+++ .. ..+.|.+.++|+++. +..||+|+++++|++
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~-------l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHF-------LSQVDRIILVHEGMI 817 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhH-------HHhCCEEEEEeCCEE
Confidence 99999999999 7776666665543 32 234588888999977 578999999999876
No 278
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.70 E-value=4.2e-18 Score=156.44 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=123.0
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.++++||+..|.. +++++++.+.+ |+++||+|.|||||||+++.|.|+++... . ...|+ ++|.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~-GE~lgIvGESGsGKSt~a~~i~gll~~~~-~-------~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEP-GEILGIVGESGSGKSTLALALMGLLPEGG-R-------ITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecC-CcEEEEEcCCCCCHHHHHHHHhccCCCCC-c-------ccceEEEECCc
Confidence 4677888888753 58999999998 99999999999999999999999986221 0 12455 5677
Q ss_pred ceeeeCHHHHHHHh-------hccchhhhheec--cc--------ccCccHHH----HHHHH-----------hcCCcEE
Q 043263 139 DYFFVSKEEFLQMV-------DKNELLEYALVY--GD--------YKGIPKKQ----IREYM-----------AKGYDIV 186 (286)
Q Consensus 139 ~~~~~~~~~~~~~i-------~~~~~~~~~~~~--~~--------~~~~~~~~----i~~~~-----------~~g~~~v 186 (286)
++..++..+.+... .|..+-..+..+ ++ .+....++ +.+.+ ..-...+
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL 155 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL 155 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence 76666666554432 233221111000 00 01111111 11111 1234568
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+||++||+.+|.++..+|.++|+ ||+.+...+.+.|++ ..+.+...|+|++... ...||+|+|+.
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv------a~~aDrv~Vm~ 229 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV------AELADRVVVMY 229 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH------HHhcCeEEEEE
Confidence 89999999999999989988888 777766666665543 3455777889999876 47899999999
Q ss_pred CCCHHHH
Q 043263 258 EGKLDSA 264 (286)
Q Consensus 258 ~G~i~~~ 264 (286)
+|.+.|.
T Consensus 230 ~G~iVE~ 236 (539)
T COG1123 230 KGEIVET 236 (539)
T ss_pred CCEEEEe
Confidence 9977543
No 279
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2e-18 Score=148.47 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=111.5
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC---CCCC--cCCcce
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM---RPGE--VNGKDY 140 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~---~~G~--~~g~~~ 140 (286)
+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++.. .| ..|+ ++|.++
T Consensus 6 l~~~~l~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYP-NEITALIGPSGSGKSTLLRSINRMNDL----------NPEVTITGSIVYNGHNI 74 (252)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhccccc----------CCCCCccceEEECCEEC
Confidence 677889998875 78999999998 999999999999999999999997420 02 2344 444433
Q ss_pred eee--CHHHHHHHh----hc-----cchhhhheecccccCcc-----HHHHHH-------------HHhcCCcEEEEeCH
Q 043263 141 FFV--SKEEFLQMV----DK-----NELLEYALVYGDYKGIP-----KKQIRE-------------YMAKGYDIVLRVDI 191 (286)
Q Consensus 141 ~~~--~~~~~~~~i----~~-----~~~~~~~~~~~~~~~~~-----~~~i~~-------------~~~~g~~~v~~~~~ 191 (286)
... ....++..+ ++ ....++........+.. .+.+.+ ........+++|++
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 75 YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred cCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 110 011111111 11 11112211100001110 111111 12233345778999
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i 225 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQA------SRISDRTGFFLDGDL 225 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 999999999988888888 77777777777776532 24667778988764 367999999998865
No 280
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.4e-18 Score=148.06 Aligned_cols=181 Identities=16% Similarity=0.159 Sum_probs=111.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|+.+.... .+..|+ ++|.++..
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPK-NRVTALIGPSGCGKSTLLRCFNRMNDLIPG-------CRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECC-CcEEEEECCCCCCHHHHHHHHhccccCCCC-------CCcceEEEECCEEccc
Confidence 4678899999975 79999999998 999999999999999999999997531000 001343 44443321
Q ss_pred e--CHHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263 143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~ 193 (286)
. .....+..+ ++. ...++..+....++. . .+.+.++ +......+++|++|+
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred cccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 1 111111111 111 111111111000010 0 1111111 223334567889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|++... ...||+++++++|++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~------~~~~d~v~~l~~G~i 226 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA------ARVSDYTGFMYLGKL 226 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH------HhhCCEEEEEECCEE
Confidence 9999999988888888 77777777766666532 23666678988874 367999999988865
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.70 E-value=7.4e-18 Score=144.52 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=105.0
Q ss_pred HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
+++||++. ..|.++++.+.+ |++++|+|+||||||||+++|+|+++ ..|+ ++|.++...+..
T Consensus 2 ~~~~l~~~--~~l~~vsl~i~~-Gei~~l~G~nGsGKSTLl~~l~Gl~~-------------~~G~i~~~g~~i~~~~~~ 65 (248)
T PRK03695 2 QLNDVAVS--TRLGPLSAEVRA-GEILHLVGPNGAGKSTLLARMAGLLP-------------GSGSIQFAGQPLEAWSAA 65 (248)
T ss_pred cccccchh--ceecceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC-------------CCeEEEECCEecCcCCHH
Confidence 34566665 268888888887 99999999999999999999999874 2444 556554333332
Q ss_pred HHHHHh---hcc-ch------hhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC-
Q 043263 147 EFLQMV---DKN-EL------LEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG- 202 (286)
Q Consensus 147 ~~~~~i---~~~-~~------~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~- 202 (286)
.+...+ .+. .+ .++..+... .... .+.+.+. +......+++|++|++.+|++++.
T Consensus 66 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 66 ELARHRAYLSQQQTPPFAMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred HHhhheEEecccCccCCCccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 222211 111 11 122111111 1111 1112222 223334567789999999999985
Q ss_pred ------CCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 ------DSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ------~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~G~i 211 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT------LRHADRVWLLKQGKL 211 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 4466666 6666566666666543 234667778988864 478999999998865
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.6e-18 Score=161.31 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=111.0
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
+|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |.+|+ ++|.++...+..
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~ 68 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRP-HSIHALMGENGAGKSTLLKCLFGIYQ------------KDSGSILFQGKEIDFKSSK 68 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCceEEEECCEECCCCCHH
Confidence 567778865 68999999998 99999999999999999999999986 55665 566554322221
Q ss_pred -HHHHH---hhcc-------chhhhheeccc--ccC--ccH----HHHHHHHh---------cCCcEEEEeCHHHHHHHH
Q 043263 147 -EFLQM---VDKN-------ELLEYALVYGD--YKG--IPK----KQIREYMA---------KGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 147 -~~~~~---i~~~-------~~~~~~~~~~~--~~~--~~~----~~i~~~~~---------~g~~~v~~~~~q~v~iar 198 (286)
.++.. +.+. ...++.. ++. ..+ ... +.+.+++. .....+++|++|++.+|+
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 69 EALENGISMVHQELNLVLQRSVMDNMW-LGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred HHHhCCEEEEecccccccCCCHHHHhh-cccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHH
Confidence 11111 1111 1112211 110 011 111 12222221 122346678999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~------~~~~d~i~~l~~G~i 212 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI------FQLCDEITILRDGQW 212 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99988888777 7776677776666543 234677779988875 367999999998865
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-18 Score=165.46 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=113.2
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~ 140 (286)
.++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+. ++|..+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~-Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~----------~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQR-GETLAIVGESGSGKSVTALALMRLLEQAGGLVQ----------CDKMLL 80 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE----------ECCEEe
Confidence 4788999999951 68999999998 999999999999999999999999863333222 223211
Q ss_pred ----------eeeCHHHHHH-------Hhhcc---------chhhhheecccc-cCccH----HHHHHH-----------
Q 043263 141 ----------FFVSKEEFLQ-------MVDKN---------ELLEYALVYGDY-KGIPK----KQIREY----------- 178 (286)
Q Consensus 141 ----------~~~~~~~~~~-------~i~~~---------~~~~~~~~~~~~-~~~~~----~~i~~~----------- 178 (286)
...+...+.. ++.|. ...++..+.... .+... +.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh
Confidence 0011111111 11111 111111100000 01111 112222
Q ss_pred -HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccC
Q 043263 179 -MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 179 -~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
+......+++|++||+.+|++++.+|+++|+ ||+.+...+.+.+.+ ..+.+...++|++... ..
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~------~~ 234 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV------AE 234 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HH
Confidence 1233346778999999999999988888887 777766666665543 2244778889998875 47
Q ss_pred CCcEEEECCCCCHH
Q 043263 249 NFDYVVVNAEGKLD 262 (286)
Q Consensus 249 ~~d~viv~~~G~i~ 262 (286)
.||+|+++++|++.
T Consensus 235 ~adri~vl~~G~i~ 248 (623)
T PRK10261 235 IADRVLVMYQGEAV 248 (623)
T ss_pred hCCEEEEeeCCeec
Confidence 89999999999774
No 284
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=2e-18 Score=159.17 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=112.2
Q ss_pred hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
..+.++|+++.|+. +|.++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~-GEivgIiGpNGSGKSTLLkiLaGLl~------------P~sGeI~I~G~ 86 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPE-GEIVGIIGLNGSGKSTLSNLIAGVTM------------PNKGTVDIKGS 86 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence 34778888888875 58899999998 99999999999999999999999986 55555 4454
Q ss_pred cee-eeCHHHHHHHhhccchhhhheecccccCccHHH----HHH---------HHhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 139 DYF-FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ----IRE---------YMAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 139 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----i~~---------~~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
+.. .... ....+....++..+....++...+. +.+ .+......+++|++|++.+|++++.+|
T Consensus 87 ~~~i~~~~----~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 87 AALIAISS----GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred eeeEEecc----ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 311 0000 0001111122211111111111111 111 123334567789999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i------~~l~DrIivL~~GkI 221 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV------KSFCTKALWLHYGQV 221 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 88888 7776666777766543 233667778988764 367999999988754
No 285
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=2.8e-18 Score=162.47 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=116.1
Q ss_pred HHHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.++++|+++.|+ .+++++++.+.+ |++++|+||||||||||+++|+|+++.... .|.+|+ ++|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~ 76 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEA-GETLALVGESGSGKSVTALSILRLLPSPPV-------VYPSGDIRFHGE 76 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCcC-------CccceEEEECCE
Confidence 367889999995 168999999998 999999999999999999999999752000 013555 5666
Q ss_pred ceeeeCHHHH---H-H---Hhhccc---hh-----hhheec--ccccCccH----HHHHHHH------------hcCCcE
Q 043263 139 DYFFVSKEEF---L-Q---MVDKNE---LL-----EYALVY--GDYKGIPK----KQIREYM------------AKGYDI 185 (286)
Q Consensus 139 ~~~~~~~~~~---~-~---~i~~~~---~~-----~~~~~~--~~~~~~~~----~~i~~~~------------~~g~~~ 185 (286)
++...+.... + . .+.|.. +. .+.... ....+... +.+.+++ ......
T Consensus 77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~ 156 (529)
T PRK15134 77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ 156 (529)
T ss_pred ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence 5543332211 1 0 111211 10 000000 00001111 1222222 223456
Q ss_pred EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~dri~~l 230 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV------RKLADRVAVM 230 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH------HHhcCEEEEE
Confidence 778999999999999988888877 7777676776666542 244777889998875 3679999999
Q ss_pred CCCCH
Q 043263 257 AEGKL 261 (286)
Q Consensus 257 ~~G~i 261 (286)
++|++
T Consensus 231 ~~G~i 235 (529)
T PRK15134 231 QNGRC 235 (529)
T ss_pred ECCEE
Confidence 98865
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-18 Score=149.57 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=113.6
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++.... ..|..|+ ++|.++..
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPK-NRVTAFIGPSGCGKSTLLRCFNRMNDLVD-------NCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcCCCcc-------CCCCceEEEECCEECcc
Confidence 4788999999975 78999999998 99999999999999999999999864100 0013444 44443321
Q ss_pred --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263 143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~ 193 (286)
.....++..+ .+. ...++..+.....+. . .+.+.++ +......+++|++|+
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence 0111111111 111 111221110001111 0 1112221 122334566789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
+++|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++.
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA------ARVSDYTAFMYMGKLV 246 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH------HhhCCEEEEEECCEEE
Confidence 9999999988888888 77776777777666532 23566678988774 3679999999988763
No 287
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.69 E-value=1.8e-18 Score=148.66 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=110.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc--cCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~--~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.+.++||++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|+ ++ |..|+ ++|.++
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~------------~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINK-GEIHAIMGPNGSGKSTLSKVIAGHPAYK------------ILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcC-CcEEEEECCCCCCHHHHHHHHcCCCcCc------------CCCceEEECCEEc
Confidence 4778899999975 79999999998 999999999999999999999997 34 34444 444433
Q ss_pred eeeCHHHHHHH----h-hccc------hhhhheecc-------cccCcc----HHHHHHHH----------hcCCc-EEE
Q 043263 141 FFVSKEEFLQM----V-DKNE------LLEYALVYG-------DYKGIP----KKQIREYM----------AKGYD-IVL 187 (286)
Q Consensus 141 ~~~~~~~~~~~----i-~~~~------~~~~~~~~~-------~~~~~~----~~~i~~~~----------~~g~~-~v~ 187 (286)
...+....... + +... ..++..... ...... .+.+.+++ ..... .++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFS 153 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCC
Confidence 22222111110 0 0000 011100000 000000 01112221 11122 377
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCC-CcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKN-FDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~ 258 (286)
+|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ... ||+++++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~------~~~~~d~i~~l~~ 227 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL------DYIKPDYVHVMQN 227 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HhhhCCEEEEEeC
Confidence 8899999999999989988888 7777777787777653 234667778987764 233 899999988
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 228 G~i 230 (252)
T CHL00131 228 GKI 230 (252)
T ss_pred CEE
Confidence 875
No 288
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3e-18 Score=148.79 Aligned_cols=181 Identities=18% Similarity=0.137 Sum_probs=113.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++.... ..|..|+ ++|.++..
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~-------~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHE-NEVTAIIGPSGCGKSTYIKTLNRMVELVP-------SVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCC-------CCCCceeEEECCEEccc
Confidence 4788999999975 78999999998 99999999999999999999999863000 0023444 44544321
Q ss_pred --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263 143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIRE-------------YMAKGYDIVLRVDIQG 193 (286)
Q Consensus 143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~-------------~~~~g~~~v~~~~~q~ 193 (286)
.....++..+ .+. ...++..+....++. . .+.+.+ .+......+++|++|+
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 1111111111 111 111221110000111 1 111111 1223344577889999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i------~~~~d~i~~l~~G~i 244 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA------ARISDKTAFFLNGYV 244 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988988888 77777777777666542 23566678988874 367999999988876
No 289
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.9e-18 Score=146.94 Aligned_cols=177 Identities=17% Similarity=0.145 Sum_probs=109.9
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .|..|+ ++|.++..
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPK-NQITAFIGPSGCGKSTILRCFNRLNDLIPG-------FRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhcccCC-------CCCceEEEECCEEccc
Confidence 4778899999975 79999999998 999999999999999999999998641000 013343 44544321
Q ss_pred --eCHHHHHHHh---hcc------chhhhheecccccCc---cHHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263 143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI---PKKQIREY-------------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~---~~~~i~~~-------------~~~g~~~v~~~~~q~v~ 195 (286)
.....++..+ .+. ...++..+.....+. ..+.+.++ .......+++|++|++.
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC 161 (264)
T ss_pred cccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH
Confidence 1111222111 111 111211110000010 01111111 22233457788999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|++++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~------~~~~d~v~~l~ 224 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA------ARVSDMTAFFN 224 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEe
Confidence 99999988888888 77776777777776532 23666778988875 47899999887
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.7e-18 Score=162.81 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=115.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++...
T Consensus 5 l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~i~~~ 71 (501)
T PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRA-GQVHALMGENGAGKSTLLKILSGNYQ------------PDAGSILIDGQEMRFA 71 (501)
T ss_pred EEEeeeEEEECCEEEEeeeeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEECCCC
Confidence 677899999975 79999999998 99999999999999999999999986 55665 455544222
Q ss_pred CHH-HHHHHh---hcc-------chhhhheecc--cccC-ccH----HHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263 144 SKE-EFLQMV---DKN-------ELLEYALVYG--DYKG-IPK----KQIREYMA---------KGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~-~~~~~i---~~~-------~~~~~~~~~~--~~~~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v~i 196 (286)
+.. .++..+ .+. ...++..+.. ..++ ... +.+.+.+. .....+++|++|++.+
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 72 STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred CHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHH
Confidence 211 111111 111 1122211100 0011 111 12222221 1223466789999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~------~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI------FALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence 9999988887777 7776677777666543 234677889988875 3679999999988763
No 291
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=4.8e-18 Score=142.94 Aligned_cols=168 Identities=11% Similarity=0.098 Sum_probs=101.6
Q ss_pred hHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 70 LRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 70 ~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+.|+.+.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++...+
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~~ 69 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPT-GQLTMIVGQVGCGKSSLLLAILGEMQ------------TLEGKVHWSNKNESEPS 69 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCccccccc
Confidence 4566677753 68888888888 99999999999999999999999986 44444 4444322111
Q ss_pred H----HHHHHH---hhcc------chhhhheecccccCccHHHHHHH---------Hh-----------cCCcEEEEeCH
Q 043263 145 K----EEFLQM---VDKN------ELLEYALVYGDYKGIPKKQIREY---------MA-----------KGYDIVLRVDI 191 (286)
Q Consensus 145 ~----~~~~~~---i~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~-----------~g~~~v~~~~~ 191 (286)
. ...+.. +.+. ...++.... .. ...+...+. +. .....+.+|+.
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 146 (218)
T cd03290 70 FEATRSRNRYSVAYAAQKPWLLNATVEENITFG-SP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQR 146 (218)
T ss_pred ccccchhhcceEEEEcCCCccccccHHHHHhhc-Cc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHH
Confidence 0 000110 0111 111111111 00 111111111 11 12345677899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHH-HH-H--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVER-LV-E--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~r-l~-~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|++.+|++++.+|+++|+ ||+.+...+.++ +. . ..+.+...++|+.+. ...||+++++++|+
T Consensus 147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-------~~~~d~i~~l~~G~ 218 (218)
T cd03290 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-------LPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-------HhhCCEEEEecCCC
Confidence 999999999988888887 777666665552 22 1 123466777888776 34699999998774
No 292
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=2.5e-18 Score=144.30 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=107.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~i~~ 77 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDA-GEALLVQGDNGAGKTTLLRVLAGLLH------------VESGQIQIDGKTATR 77 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCCeeEEECCEEccc
Confidence 4778899999875 78999999998 99999999999999999999999987 55554 44543321
Q ss_pred eCHHHHHHHh-hcc------chhhhheecccccCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 143 VSKEEFLQMV-DKN------ELLEYALVYGDYKGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 143 ~~~~~~~~~i-~~~------~~~~~~~~~~~~~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
......-..+ +.. ...++.......++.. .+.+.+.+ ......+++|++|++.++++++.+|+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred hhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0000000000 111 1111111110011111 11122221 22223566789999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++|+ ||+.+.+.+.+.+.+. .+.+...++|+++.. ...||++++++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~~~i~~l~ 211 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAA------PPVRTRMLTLE 211 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhh------hhhcceEEEEe
Confidence 8777 7776666776666532 233666778988875 47889988765
No 293
>PRK08356 hypothetical protein; Provisional
Probab=99.69 E-value=2.6e-15 Score=124.13 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=121.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
..+++|+||+||||||+++.|.. +. +. .+..+++.+..++.++.+++|.+...+..++....++++..+.++.||..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g-~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG-FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC-Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 46899999999999999999965 43 32 45566666667777788888888888887777788888888888888754
Q ss_pred H--HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH-
Q 043263 172 K--KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE- 242 (286)
Q Consensus 172 ~--~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~- 242 (286)
. +.+.+.+.....++++|- ..+..+..+-.....+|+++++ .+.+.+|+..|+.. +.+.+.........
T Consensus 82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l 159 (195)
T PRK08356 82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL 159 (195)
T ss_pred HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhcCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence 2 222223333345666664 3344444443223578889987 68888999988654 33333332222221
Q ss_pred --HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 243 --EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 243 --~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..+....||.+|+|+ ++++++.++|.+++...
T Consensus 160 ~~~~~~~~~aD~vI~N~-~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 160 YHTTKLKDKADFVIVNE-GTLEELRKKVEEILREL 193 (195)
T ss_pred hhhhhHHHhCcEEEECC-CCHHHHHHHHHHHHHHh
Confidence 222346799999774 79999999999998765
No 294
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8e-19 Score=152.52 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=109.8
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
+.++||++.|+ . .++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~ 73 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPG-GSIAALVGVNGSGKSTLFKALMGFVR------------LASGKISILGQPTRQ 73 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEhHH
Confidence 67788899885 2 78999999998 99999999999999999999999986 55555 45544310
Q ss_pred eCHH-HHHHHhhcc-c-------hhhhheeccc-----ccCc----cHHHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263 143 VSKE-EFLQMVDKN-E-------LLEYALVYGD-----YKGI----PKKQIREY---------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~~~~-~~~~~i~~~-~-------~~~~~~~~~~-----~~~~----~~~~i~~~---------~~~g~~~v~~~~~q~v~ 195 (286)
.... .+. .+.+. . .+.+....+. .... ..+.+.++ .......+++|++|++.
T Consensus 74 ~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 74 ALQKNLVA-YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred hhccceEE-EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH
Confidence 0000 000 00111 0 0111111110 0000 11122222 12233456778999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||++++. +|++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~------~~~~d~v~~~-~G~i 219 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV------TEFCDYTVMV-KGTV 219 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEE-CCEE
Confidence 99999988888888 7777777777777653 234667778988764 3678998777 5654
No 295
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-18 Score=147.77 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=111.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC--CCCC--cCCccee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM--RPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~--~~G~--~~g~~~~ 141 (286)
++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+.+.. ++ ..|+ ++|.++.
T Consensus 4 l~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---------~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 4 IDARDVNFWYGDFHALKGISMEIEE-KSVVAFIGPSGCGKSTFLRLFNRMNDLI---------PATRLEGEIRIDGRNIY 73 (250)
T ss_pred EEEEEEEEEECCEeEEeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhhhhccc---------CCCCCceEEEECCEecc
Confidence 567788888875 68999999998 9999999999999999999999863100 01 2454 4555442
Q ss_pred ee--CHHHHHHHh---hcc------chhhhheecccccCc-----cHHHHHHHH-------------hcCCcEEEEeCHH
Q 043263 142 FV--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-----PKKQIREYM-------------AKGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-----~~~~i~~~~-------------~~g~~~v~~~~~q 192 (286)
.. +...++..+ .+. ...++..+....++. ..+.+.+++ ......+++|++|
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 21 111112111 111 111111110000111 011122222 2223456788999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQA------ARVSDKTAFFYMGEM 223 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhCCEEEEEECCEE
Confidence 99999999988888888 77777777777776542 23666778988874 367999999998865
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.69 E-value=2.9e-17 Score=144.02 Aligned_cols=173 Identities=17% Similarity=0.132 Sum_probs=114.7
Q ss_pred HHhHhHHHHhcc-------------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC
Q 043263 68 ELLRSLEASLGH-------------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE 134 (286)
Q Consensus 68 i~~~~v~~~~~~-------------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~ 134 (286)
++.++|..+|.. +++++++...+ |+.+||+|.|||||||+..+|.++++ ..|+
T Consensus 277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~-gqTlGlVGESGSGKsTlG~allrL~~-------------s~G~ 342 (534)
T COG4172 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR-GQTLGLVGESGSGKSTLGLALLRLIP-------------SQGE 342 (534)
T ss_pred EEecceEEEEecCCccccccchheEEeccceeEecC-CCeEEEEecCCCCcchHHHHHHhhcC-------------cCce
Confidence 556666666632 57788888887 99999999999999999999999974 3466
Q ss_pred --cCCcceeeeCHHHHHHHh------hccch------------hhh-heecccccCccH----HHHHHHH----------
Q 043263 135 --VNGKDYFFVSKEEFLQMV------DKNEL------------LEY-ALVYGDYKGIPK----KQIREYM---------- 179 (286)
Q Consensus 135 --~~g~~~~~~~~~~~~~~i------~~~~~------------~~~-~~~~~~~~~~~~----~~i~~~~---------- 179 (286)
++|+++...+..+++.+. .|+.| +.. ..++.. ..+. +.+.+++
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~--~ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP--KLSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC--CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 678888777776655432 22222 111 111110 1121 1222222
Q ss_pred hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHH----------HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263 180 AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEM----------ALVERLVERKTENREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 180 ~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~----------~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~ 249 (286)
..-...+++|++||++|||+++-+|.+ |+||.|+-. .+.+.|.++.+.+...|.|++... ...
T Consensus 421 ~RYPhEFSGGQRQRIAIARAliLkP~~-i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv------rAl 493 (534)
T COG4172 421 NRYPHEFSGGQRQRIAIARALILKPEL-ILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV------RAL 493 (534)
T ss_pred hcCCcccCcchhhHHHHHHHHhcCCcE-EEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH------HHh
Confidence 223356779999999999999955555 555555432 233445555556778889999886 478
Q ss_pred CcEEEECCCCCHHH
Q 043263 250 FDYVVVNAEGKLDS 263 (286)
Q Consensus 250 ~d~viv~~~G~i~~ 263 (286)
||+|||+.+|++.|
T Consensus 494 ~~~viVm~~GkiVE 507 (534)
T COG4172 494 CHRVIVMRDGKIVE 507 (534)
T ss_pred hceEEEEeCCEEee
Confidence 99999999998744
No 297
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=3.3e-18 Score=142.04 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=102.1
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++|+++.|+. .++++++.+.+ |++++|+|+|||||||++++|+|+++ |..|+ ++|.++..
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~v~~~g~~~~~- 67 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPA-GGLLHLKGSNGAGKTTLLKLIAGLLN------------PEKGEILFERQSIKK- 67 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeeEEECCCcccc-
Confidence 346778888865 78999999998 99999999999999999999999986 66665 56665432
Q ss_pred CHHHHHHHh---hcc-------chhhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
....++..+ .+. ...++.. ++.........+.+.+ ......+.+|+.|++.+|++++.+|
T Consensus 68 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 68 DLCTYQKQLCFVGHRSGINPYLTLRENCL-YDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred CHHHHHhheEEeccccccCcCCCHHHHHH-HHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 112222211 111 1111111 1100000111222221 2222356778999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
+++|+ ||+.+.+.+.+.|.+. .+.+...++|+... ...||.-+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-------~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-------LNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-------ccccchhh
Confidence 88888 7776666666666542 23355566776655 45566543
No 298
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.8e-18 Score=150.08 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=113.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC--cceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+.. .. .|..|+ ++|.++
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~---------~~~~G~I~~~g~~i 108 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILS-KYVTAIIGPSGCGKSTFLRAINRMNDLIPS---------CHTTGALMFDGEDI 108 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC---------CCCceEEEECCEEh
Confidence 4788999999975 78999999998 99999999999999999999999742 00 013444 445433
Q ss_pred eee--CHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHH-------------HHhcCCcEEEEeCH
Q 043263 141 FFV--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIRE-------------YMAKGYDIVLRVDI 191 (286)
Q Consensus 141 ~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~-------------~~~~g~~~v~~~~~ 191 (286)
... ....++..+ .+. ...++..+....++. . .+.+.+ .+......+++|++
T Consensus 109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred hhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 211 111111111 111 111111110000011 0 111111 12333455778899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~------~~~~d~i~~L~~G~i 259 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA------SRVSDYTMFFYEGVL 259 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 999999999988888888 77777777777776542 23566778988874 367999999998875
No 299
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.69 E-value=6.4e-18 Score=144.95 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=107.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++||++.|+. +++++++.+.+ |++++|+|+||||||||+++|+|+. + |..|+ ++|.++.
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRP-GEVHAIMGPNGSGKSTLSATLAGREDYE------------VTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCccCC------------CCceEEEECCCccc
Confidence 456788888875 78999999998 9999999999999999999999984 4 44444 4554443
Q ss_pred eeCHHHHHH-Hh---hcc-chh------hhh-eecccc------cCcc----HHHHHHHHh---------cC-C-cEEEE
Q 043263 142 FVSKEEFLQ-MV---DKN-ELL------EYA-LVYGDY------KGIP----KKQIREYMA---------KG-Y-DIVLR 188 (286)
Q Consensus 142 ~~~~~~~~~-~i---~~~-~~~------~~~-~~~~~~------~~~~----~~~i~~~~~---------~g-~-~~v~~ 188 (286)
..+...... .+ .+. .+. .+. ....+. .... .+.+.+.+. .. . ..+++
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~ 148 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 148 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH
Confidence 222221110 00 011 000 000 000000 0001 111121111 01 1 14778
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCC
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKN-FDYVVVNAEG 259 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G 259 (286)
|++|++.+|++++.+|+++|+ ||+.+...+.+.+.+. .+.+...++|++... ... +|+|+++++|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~------~~~~~d~i~~l~~g 222 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL------DYIKPDYVHVLYQG 222 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HhhhCCEEEEEECC
Confidence 999999999999988888888 7777677777665543 233667778987763 233 8999998888
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 223 ~i 224 (248)
T PRK09580 223 RI 224 (248)
T ss_pred eE
Confidence 76
No 300
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.68 E-value=4.5e-18 Score=141.34 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=103.7
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++....
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~ 68 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAA-GEALQVTGPNGSGKTTLLRILAGLSP------------PLAGRVLLNGGPLDFQR 68 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEeccccc
Confidence 45677888865 68899999998 99999999999999999999999986 55565 4555443211
Q ss_pred HHHHHHHh----hccch------hhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
..++..+ ++..+ .++....... ...+.+.+++ ......+.+|++|++.+|++++.+|+
T Consensus 69 -~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 69 -DSIARGLLYLGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred -HHhhhheEEeccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 1122111 11111 1221111111 1222233322 12223466789999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|+.... ...++++++.
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~------~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL------SEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh------hhccceeEec
Confidence 7777 6666666676666542 233566667765543 4678888765
No 301
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.68 E-value=3.3e-18 Score=146.82 Aligned_cols=168 Identities=16% Similarity=0.191 Sum_probs=106.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc-ceee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK-DYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~-~~~~ 142 (286)
++++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|. .+.+
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~-Ge~~~I~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~~~~~i~~ 71 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKP-GKILTLLGPNGAGKSTLVRVVLGLVA------------PDEGVIKRNGKLRIGY 71 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCccCEEE
Confidence 667888988875 78999999998 99999999999999999999999986 44443 2221 1221
Q ss_pred eCHHH-HHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE---
Q 043263 143 VSKEE-FLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF--- 209 (286)
Q Consensus 143 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il--- 209 (286)
+..+. +...+. ....++.... .+...+.+.++ +......+++|++|++.+|++++.+|+++|+
T Consensus 72 v~q~~~~~~~l~-~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 72 VPQKLYLDTTLP-LTVNRFLRLR---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred eccccccccccC-hhHHHHHhcc---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11110 000000 0001110000 01111222222 2333455778999999999999988887777
Q ss_pred ---EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 ---LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 ---ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i------~~~~d~i~~l~~ 196 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV------MAKTDEVLCLNH 196 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEECC
Confidence 6776667776666542 234677779988875 367999998875
No 302
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.6e-18 Score=148.50 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=111.2
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++|+++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|++..... .+..|+ ++|.++..
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~-Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPA-KKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-------AKVEGRLLYRDRNIYD 91 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhcccccccC-------CCcCceEEECCEeccc
Confidence 5788999999976 79999999998 999999999999999999999998641000 012444 45544321
Q ss_pred e--CHHHHHHHh---hcc------chhhhheecccccCc---cHHHHH-------------HHHhcCCcEEEEeCHHHHH
Q 043263 143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI---PKKQIR-------------EYMAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~---~~~~i~-------------~~~~~g~~~v~~~~~q~v~ 195 (286)
. ....++..+ .+. .+.++.......... ..+.+. ..+......+.+|++|++.
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 1 111111111 111 111111110000000 011111 1122333456788999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+|++++.+|+++|+ ||+.+.+.+.+.|.+.. +.+...++|+++.. ...||++++++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~ 234 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA------SRVADWTAFFN 234 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEe
Confidence 99999988888888 78777777877776542 23566778988775 37899999996
No 303
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=4.9e-18 Score=141.73 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++. |..|+ ++|.++..
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~- 68 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAA-GEALVLTGPNGSGKTTLLRLIAGLLP------------PAAGTIKLDGGDIDD- 68 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEeCcc-
Confidence 456788888875 78999999998 99999999999999999999999986 55555 45544321
Q ss_pred CHHHHHHHh----hccc------hhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 144 SKEEFLQMV----DKNE------LLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 144 ~~~~~~~~i----~~~~------~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
.. ++..+ ++.. ..++.......++...+.+.+. .......+++|++|++.+|++++.+|
T Consensus 69 -~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 69 -PD-VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred -hh-hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 00 11111 1111 1111111111111111222222 12223457778999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+++|+ ||+.+...+.+.|.+. .+.+...++|++... .. |+++...
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~-------~~-~~~~~~~ 199 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL-------PG-ARELDLG 199 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh-------cc-CcEEeec
Confidence 77777 6666666666666542 233666678877763 33 7666543
No 304
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=6.2e-18 Score=141.89 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=105.9
Q ss_pred hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC----
Q 043263 72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS---- 144 (286)
Q Consensus 72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~---- 144 (286)
+|+++|+. .+ ++++.+.+ ++++|+|+||||||||+++|+|+++ |..|+ ++|.++....
T Consensus 5 ~l~~~~~~~~~-~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL-KIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEK------------PDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee-CceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEecccccchhh
Confidence 67778876 34 77777775 9999999999999999999999986 55565 4555432111
Q ss_pred HHHHHHHh---hcc-chhhhheecccc------cC--ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 145 KEEFLQMV---DKN-ELLEYALVYGDY------KG--IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 145 ~~~~~~~i---~~~-~~~~~~~~~~~~------~~--~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
....+..+ .+. .+........++ +. ...+.+.+. .......+++|++|++.+|++++.+
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 11111111 111 111111111110 00 011122222 2233355778899999999999988
Q ss_pred CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++|+ ||+.+...+.+.+.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 210 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA------EYLADRIVVMEDGRL 210 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence 888888 7777777777766543 134667778988774 367999999998875
No 305
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.68 E-value=5.2e-18 Score=140.63 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=92.2
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++....
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~ 68 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNA-GEALQVTGPNGIGKTTLLRILAGLLR------------PDSGEVRWNGTALAEQR 68 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEEcccch
Confidence 35677777765 68999999998 99999999999999999999999986 55555 4554432211
Q ss_pred HHHHHHHh----hcc------chhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 145 KEEFLQMV----DKN------ELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 145 ~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
. .++..+ ++. ...++............+.+.++ +......+++|++|++.+|++++.+|+
T Consensus 69 ~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 69 D-EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred H-HhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 1 111110 111 11111111111111111112222 223334567789999999999998877
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHH
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIA 238 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~ 238 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|+..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 7777 5555555665555542 2224555566443
No 306
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.68 E-value=1.8e-17 Score=140.60 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=100.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---hhcc
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---VDKN 155 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i~~~ 155 (286)
++++++.+.+ |++++|+||||||||||+++|+|++.... .+..|+ ++|.++... ...... +.+.
T Consensus 2 l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--------~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKR-GEVLALVGESGSGKSLTCLAILGLLPPGL--------TQTSGEILLDGRPLLPL--SIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCcc--------CccccEEEECCEechhh--hhhhheeEEEecC
Confidence 5677777777 99999999999999999999999986200 014555 556543211 000000 1111
Q ss_pred c---hh------hhheecccccCc-c---HHHHHHH------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 156 E---LL------EYALVYGDYKGI-P---KKQIREY------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 156 ~---~~------~~~~~~~~~~~~-~---~~~i~~~------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
. +. ++........+. . .+.+.+. .......+++|++|++.+|++++.+|+++|+
T Consensus 71 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred chhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 10 110000000111 1 1112222 1223345778899999999999988888777
Q ss_pred -----EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 -----LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i 204 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVV------ARIADEVAVMDDGRI 204 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 7776677777766653 234667778988874 367999999998875
No 307
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=9.4e-18 Score=158.24 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=116.9
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.++++|+++.|+..++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++...+
T Consensus 265 ~l~~~~l~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~------------p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 265 VFEVRNVTSRDRKKVRDISFSVCR-GEILGFAGLVGSGRTELMNCLFGVDK------------RAGGEIRLNGKDISPRS 331 (510)
T ss_pred EEEEeCccccCCCcccceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCc------------CCCCeEEECCEECCCCC
Confidence 478999998876689999999998 99999999999999999999999986 55665 4555442211
Q ss_pred H-HHHHHH---hhcc----------chhhhheecccc----c----Cc-c----HHHHHHHHhc----------CCcEEE
Q 043263 145 K-EEFLQM---VDKN----------ELLEYALVYGDY----K----GI-P----KKQIREYMAK----------GYDIVL 187 (286)
Q Consensus 145 ~-~~~~~~---i~~~----------~~~~~~~~~~~~----~----~~-~----~~~i~~~~~~----------g~~~v~ 187 (286)
. ..++.. +.+. ...++....... + +. . .+.+.+.++. ....++
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 411 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELS 411 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCC
Confidence 1 111111 1121 112221110000 0 10 1 1112222211 123567
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
+|++|++.+|++++.+|+++|+ ||+.+.+.+.+.|.+. .+.+...++|++... ...||+++++++|
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~------~~~~d~i~~l~~G 485 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI------ITVCDRIAVFCEG 485 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HhhCCEEEEEECC
Confidence 8999999999999988888888 8887777777766542 234777789988765 4789999999988
Q ss_pred CHH
Q 043263 260 KLD 262 (286)
Q Consensus 260 ~i~ 262 (286)
++.
T Consensus 486 ~i~ 488 (510)
T PRK09700 486 RLT 488 (510)
T ss_pred EEE
Confidence 763
No 308
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.68 E-value=7.1e-17 Score=127.59 Aligned_cols=178 Identities=19% Similarity=0.181 Sum_probs=106.3
Q ss_pred HHHhHhHHHHhcc-----------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263 67 IELLRSLEASLGH-----------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE- 134 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~- 134 (286)
-++++|++++|.. +++.+++.... |+.++|+|.||||||||+++|+|..+ |.+|+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~-~QTlaiIG~NGSGKSTLakMlaGmi~------------PTsG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIE------------PTSGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC-CcEEEEEccCCCcHhHHHHHHhcccC------------CCCceE
Confidence 3677888877742 46677788887 99999999999999999999999987 88888
Q ss_pred -cCCcceeeeCHHHHHH---Hhhccc---hh---hhheeccc-cc---Ccc----HHHHHHHH------hcCC----cEE
Q 043263 135 -VNGKDYFFVSKEEFLQ---MVDKNE---LL---EYALVYGD-YK---GIP----KKQIREYM------AKGY----DIV 186 (286)
Q Consensus 135 -~~g~~~~~~~~~~~~~---~i~~~~---~~---~~~~~~~~-~~---~~~----~~~i~~~~------~~g~----~~v 186 (286)
++|+...+-+.....+ ++.++. |- .-....+. +. ... .+.+.+-+ ++.. ..+
T Consensus 71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~l 150 (267)
T COG4167 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHML 150 (267)
T ss_pred EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhc
Confidence 6777665544332222 222211 10 00011110 00 011 11222221 2221 234
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
.-+++||+++|||++-.|.++|. ||..-...+... |.++-+.+.+-+...+-.. ...+|.|+|++
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i------KHi~D~viVM~ 224 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI------KHISDQVLVMH 224 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh------hhhcccEEEEe
Confidence 46799999999999988888887 565544444332 2233333333344444332 25799999999
Q ss_pred CCCHHH
Q 043263 258 EGKLDS 263 (286)
Q Consensus 258 ~G~i~~ 263 (286)
+|++.|
T Consensus 225 EG~vvE 230 (267)
T COG4167 225 EGEVVE 230 (267)
T ss_pred cCceee
Confidence 997644
No 309
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.68 E-value=7.2e-18 Score=162.19 Aligned_cols=176 Identities=18% Similarity=0.113 Sum_probs=117.0
Q ss_pred HHHhHhHHHHhc-------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC
Q 043263 67 IELLRSLEASLG-------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG 133 (286)
Q Consensus 67 ~i~~~~v~~~~~-------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G 133 (286)
.++++||++.|+ .+++++++.+.+ |++++|+|+||||||||+++|+|++. |..|
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~lvG~nGsGKSTLlk~i~Gl~~------------p~~G 379 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP-GETLSLVGESGSGKSTTGRALLRLVE------------SQGG 379 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCc
Confidence 478999999995 168999999998 99999999999999999999999986 5556
Q ss_pred C--cCCcceeeeCHHHH---HHH---hhccc---hhhhheeccc------ccCc-cH----HHHHHH----------Hhc
Q 043263 134 E--VNGKDYFFVSKEEF---LQM---VDKNE---LLEYALVYGD------YKGI-PK----KQIREY----------MAK 181 (286)
Q Consensus 134 ~--~~g~~~~~~~~~~~---~~~---i~~~~---~~~~~~~~~~------~~~~-~~----~~i~~~----------~~~ 181 (286)
+ ++|.++...+.... +.. +.|+. +.....+..+ .++. .. +.+.+. ...
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 459 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence 5 55655433322211 111 12211 1111011100 0111 11 122222 222
Q ss_pred CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
....+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+ ..+.+...++|+++.. ...||+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v------~~~~dr 533 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV------ERISHR 533 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCE
Confidence 3356778999999999999988888888 777777777776654 2244778889998875 367999
Q ss_pred EEECCCCCH
Q 043263 253 VVVNAEGKL 261 (286)
Q Consensus 253 viv~~~G~i 261 (286)
|+++++|++
T Consensus 534 i~vl~~G~i 542 (623)
T PRK10261 534 VAVMYLGQI 542 (623)
T ss_pred EEEEECCEE
Confidence 999988865
No 310
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=5.3e-18 Score=160.29 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=111.5
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--Ccceeeeeecc----------cCCCCCC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATS----------RPMRPGE 134 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~----------r~~~~G~ 134 (286)
+++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++ ....+.+.... ..+..|.
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEE-GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 46788888865 78999999998 9999999999999999999999985 43344333210 0000010
Q ss_pred ---cCCccee-------eeCHH---HHHHHh---hcc--ch------hhhheecccccCccH----HHHHHH--------
Q 043263 135 ---VNGKDYF-------FVSKE---EFLQMV---DKN--EL------LEYALVYGDYKGIPK----KQIREY-------- 178 (286)
Q Consensus 135 ---~~g~~~~-------~~~~~---~~~~~i---~~~--~~------~~~~~~~~~~~~~~~----~~i~~~-------- 178 (286)
++|.++. ..... .++..+ .+. .+ .++..+....++... +.+.+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 0122110 00111 111111 111 11 111111000111111 112222
Q ss_pred -HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccC
Q 043263 179 -MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 179 -~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
+......+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ..
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~------~~ 234 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI------ED 234 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HH
Confidence 2334456788999999999999988888888 7777777776555442 234677789998875 36
Q ss_pred CCcEEEECCCCCH
Q 043263 249 NFDYVVVNAEGKL 261 (286)
Q Consensus 249 ~~d~viv~~~G~i 261 (286)
.||+|+++++|++
T Consensus 235 ~~d~i~~l~~G~i 247 (520)
T TIGR03269 235 LSDKAIWLENGEI 247 (520)
T ss_pred hcCEEEEEeCCEE
Confidence 7999999998875
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=6.4e-18 Score=160.05 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=115.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFV 143 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~ 143 (286)
.++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|. .+.++
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~----------~~~~~~i~~~ 387 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEA-GERLAIIGENGVGKTTLLRTLVGELEPDSGTVK----------WSENANIGYY 387 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE----------ECCceEEEEE
Confidence 5889999999975 78999999998 999999999999999999999999863333322 2221 12222
Q ss_pred CHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF---- 209 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il---- 209 (286)
.+.............++...+.. .....+.+.+. .......+++|++|++.+|++++.+|+++|+
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11100000000011111111000 00111112221 2334466778999999999999988888888
Q ss_pred --EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 210 --LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 210 --ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
||+.+.+.+.+.|.+.++ +...++|+++.. ...||+|+++++|.+.
T Consensus 467 ~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~~------~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 467 NHMDMESIESLNMALEKYEG-TLIFVSHDREFV------SSLATRIIEITPDGVV 514 (530)
T ss_pred CCCCHHHHHHHHHHHHHCCC-EEEEEeCCHHHH------HHhCCEEEEEECCeEE
Confidence 787777788887777644 777789988875 3679999999888764
No 312
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.1e-18 Score=146.53 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=110.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++||++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+.+.... .+.+|+ ++|.++...
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 6 ITSSDVHLFYGKFEALKGIDLDFNQ-NEITALIGPSGCGKSTYLRTLNRMNDLIPG-------VTITGNVSLRGQNIYAP 77 (252)
T ss_pred EEEEeEEEEECCeeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC-------CCcccEEEEcCEEcccc
Confidence 677899999975 79999999998 999999999999999999999997530000 002343 344333210
Q ss_pred --CHHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHH-------------HHHhcCCcEEEEeCHHHH
Q 043263 144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIR-------------EYMAKGYDIVLRVDIQGA 194 (286)
Q Consensus 144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~-------------~~~~~g~~~v~~~~~q~v 194 (286)
....+...+ ++. ...++..+.....+. . .+.+. .........+++|++|++
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 011111100 110 111111110000010 0 01111 112333455777899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i 225 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA------SRISDKTAFFLTGNL 225 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 999999988888887 77776777777776542 23667778988874 367999999998876
No 313
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.4e-18 Score=146.92 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=109.6
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC--CCCC--cCCcce
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM--RPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~--~~G~--~~g~~~ 140 (286)
.+.++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++... | ..|+ ++|.++
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~---------~~~~~G~i~~~g~~i 76 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYR-NKVTAIIGPSGCGKSTFIKTLNRISELEG---------PVKVEGVVDFFGQNI 76 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcCccc---------CCccceEEEECCEec
Confidence 4678899999975 78999999998 99999999999999999999999875100 0 2343 455443
Q ss_pred ee--eCHHHHHHHh----hcc-----chhhhheecccccC-cc----HHHHHHH-------------HhcCCcEEEEeCH
Q 043263 141 FF--VSKEEFLQMV----DKN-----ELLEYALVYGDYKG-IP----KKQIREY-------------MAKGYDIVLRVDI 191 (286)
Q Consensus 141 ~~--~~~~~~~~~i----~~~-----~~~~~~~~~~~~~~-~~----~~~i~~~-------------~~~g~~~v~~~~~ 191 (286)
.. .....++..+ ++. ...++........+ .. .+.+.+. +......+++|+.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 77 YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ 156 (259)
T ss_pred cccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 21 1111111111 111 11111111000000 01 1111121 2223345667899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
|++.+||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||++++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i------~~~~d~i~~l~ 223 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA------TRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCeEEEEe
Confidence 999999999988888877 77776777777776532 23666778988875 46899999886
No 314
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.67 E-value=4.7e-18 Score=159.92 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=111.8
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+++.. |.+|+ ++|.++...
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~-Ge~~~liG~nGsGKSTLl~~i~G~~~~~----------~~~G~i~~~g~~~~~~ 70 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRP-GECVGLCGENGAGKSTLMKILSGVYPHG----------TWDGEIYWSGSPLKAS 70 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCC----------CCCeEEEECCEECCCC
Confidence 456788888875 68999999998 9999999999999999999999987510 13454 455444322
Q ss_pred CHHHH-HHH---hhcc-------chhhhheeccccc--C--ccH----HHHHHHHh----------cCCcEEEEeCHHHH
Q 043263 144 SKEEF-LQM---VDKN-------ELLEYALVYGDYK--G--IPK----KQIREYMA----------KGYDIVLRVDIQGA 194 (286)
Q Consensus 144 ~~~~~-~~~---i~~~-------~~~~~~~~~~~~~--~--~~~----~~i~~~~~----------~g~~~v~~~~~q~v 194 (286)
+.... +.. +.+. ...++..+....+ + ... +.+.+.+. .....+++|++|++
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 71 NIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred CHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 22111 110 1111 1112111100000 0 111 12222221 11235678899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~------~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV------KAVCDTICVIRDGQH 219 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH------HHhCCEEEEEeCCeE
Confidence 999999988887777 7777677776665542 233677789988875 367999999998875
No 315
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6.9e-18 Score=146.17 Aligned_cols=181 Identities=16% Similarity=0.157 Sum_probs=111.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+.....+. +.+|+ ++|.++..
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~-------~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHE-KQVTALIGPSGCGKSTFLRCFNRMHDLYPGN-------HYEGEIILHPDNVNI 87 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCCCCC-------CcccEEEEcCccccc
Confidence 4788999999975 79999999998 9999999999999999999999986410000 02343 33433210
Q ss_pred ----eCHHHHHHHh---hcc------chhhhheecccccCcc-----HHHHHHH-------------HhcCCcEEEEeCH
Q 043263 143 ----VSKEEFLQMV---DKN------ELLEYALVYGDYKGIP-----KKQIREY-------------MAKGYDIVLRVDI 191 (286)
Q Consensus 143 ----~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~-----~~~i~~~-------------~~~g~~~v~~~~~ 191 (286)
.....++..+ .+. ...++..+.....+.. .+.+.++ +......+++|+.
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 0111111111 111 1111111100000110 1111222 1222344667899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++.++++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+++++++|++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~------~~~~d~i~~l~~G~i 238 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA------ARVSDYTAYMYMGEL 238 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 999999999988888887 77766777767666532 23566778988874 368999999998875
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=6.1e-17 Score=138.49 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=96.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhccchh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDKNELL 158 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~~~~~ 158 (286)
|+..+..+.+ |++++|+||||||||||+++|+|++. |..|+ ++|..+.+..+... ........
T Consensus 15 l~~~~~~i~~-Ge~~~i~G~NGsGKSTLlk~L~G~~~------------p~~G~i~~~g~~i~~~~q~~~--~~~~~tv~ 79 (246)
T cd03237 15 LEVEGGSISE-SEVIGILGPNGIGKTTFIKMLAGVLK------------PDEGDIEIELDTVSYKPQYIK--ADYEGTVR 79 (246)
T ss_pred EEEecCCcCC-CCEEEEECCCCCCHHHHHHHHhCCCc------------CCCCeEEECCceEEEeccccc--CCCCCCHH
Confidence 4444555666 99999999999999999999999986 56665 45544433322110 00001111
Q ss_pred hhheecccccCccH---HH------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH
Q 043263 159 EYALVYGDYKGIPK---KQ------IREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV 223 (286)
Q Consensus 159 ~~~~~~~~~~~~~~---~~------i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~ 223 (286)
++............ .+ +...+......+++|++|++++|++++.+|+++|+ ||+.+...+.+.|.
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 159 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11100000000000 01 11123334456788999999999999988888888 77776666666555
Q ss_pred Hh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 224 ER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 224 ~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
+. .+.+...++|++... ...||+|++++++
T Consensus 160 ~~~~~~~~tiiivsHd~~~~------~~~~d~i~~l~~~ 192 (246)
T cd03237 160 RFAENNEKTAFVVEHDIIMI------DYLADRLIVFEGE 192 (246)
T ss_pred HHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEcCC
Confidence 42 244777889988874 3579999998753
No 317
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=7.9e-17 Score=130.44 Aligned_cols=163 Identities=15% Similarity=0.245 Sum_probs=113.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---hhc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---VDK 154 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i~~ 154 (286)
++.++++.++. |++|.|+|.|||||||+++.|+|.+. |+.|+ ++|.|+...+...-... +.|
T Consensus 21 ~l~~~sL~I~~-g~FvtViGsNGAGKSTlln~iaG~l~------------~t~G~I~Idg~dVtk~~~~~RA~~larVfQ 87 (263)
T COG1101 21 ALNGLSLEIAE-GDFVTVIGSNGAGKSTLLNAIAGDLK------------PTSGQILIDGVDVTKKSVAKRANLLARVFQ 87 (263)
T ss_pred HHhcCceeecC-CceEEEEcCCCccHHHHHHHhhCccc------------cCCceEEECceecccCCHHHHhhHHHHHhc
Confidence 57888888887 99999999999999999999999886 78887 89999877765543332 222
Q ss_pred cch--------hhhheeccc----ccCccH-------HH-----------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 155 NEL--------LEYALVYGD----YKGIPK-------KQ-----------IREYMAKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 155 ~~~--------~~~~~~~~~----~~~~~~-------~~-----------i~~~~~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
+.. ++.+...+. .++... +. ++..+......+++||+|.+.++-+.+..|
T Consensus 88 dp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p 167 (263)
T COG1101 88 DPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP 167 (263)
T ss_pred chhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC
Confidence 221 222222111 112111 11 112234445667899999999999998666
Q ss_pred cEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.++++ |||...+.+++ ++.+....|..+|+|.+..+ +.+.+|.|++++|+|
T Consensus 168 kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A------l~yG~RlImLh~G~I 227 (263)
T COG1101 168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA------LDYGNRLIMLHSGKI 227 (263)
T ss_pred cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH------HhhCCeEEEEeCCeE
Confidence 66666 77766555544 44455556888999999988 689999999999875
No 318
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.3e-18 Score=145.73 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=109.7
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+...... .|..|+ ++|.++....
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~i~~~~ 78 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYK-REVTAFIGPSGCGKSTFLRCFNRMNDFVPN-------CKVKGELDIDGIDVYSVD 78 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccCCC-------CCcceEEEECCEehHhcc
Confidence 46778888864 68999999998 999999999999999999999998631000 012343 4444332111
Q ss_pred --HHHHHHHh---hcc------chhhhheecccccCc------cHHHHHHHHh-------------cCCcEEEEeCHHHH
Q 043263 145 --KEEFLQMV---DKN------ELLEYALVYGDYKGI------PKKQIREYMA-------------KGYDIVLRVDIQGA 194 (286)
Q Consensus 145 --~~~~~~~i---~~~------~~~~~~~~~~~~~~~------~~~~i~~~~~-------------~g~~~v~~~~~q~v 194 (286)
...++..+ .+. ...++..+.....+. ..+.+.++++ .....+.+|++|++
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred cchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 01111111 111 111111110000010 0111222211 22334667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|++... ...||+|+++++|++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQA------KKVSDRVAFFQSGRIV 227 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhcCEEEEEECCEEE
Confidence 999999988888888 77776777777766532 34667779988874 3679999999998763
No 319
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.67 E-value=1.6e-17 Score=160.66 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred hHHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-ccee
Q 043263 66 KIELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-KDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~~~~ 141 (286)
..++++||++.|+ + .++++++.+++ |++++|+||||||||||+++|+|+++...+.+. +++ ..+.
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~-Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~----------~~~~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPS-GNHLLICGPNGCGKSSLFRILGELWPVYGGRLT----------KPAKGKLF 518 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe----------ecCCCcEE
Confidence 3588999999994 2 79999999998 999999999999999999999999873333322 111 1111
Q ss_pred eeCHHHHHHHhhccchhhhheeccc-----ccCccHHHHHHHH---------h--cC-------CcEEEEeCHHHHHHHH
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGD-----YKGIPKKQIREYM---------A--KG-------YDIVLRVDIQGARTLR 198 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~i~~~~---------~--~g-------~~~v~~~~~q~v~iar 198 (286)
++.++. .+..+...++..+... ..+...+.+.+++ . .| ...+++|++||+++||
T Consensus 519 ~v~Q~~---~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 519 YVPQRP---YMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EECCCC---CCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 111110 0000111111111000 0011122222221 1 11 1357789999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+++.+|+++|+ ||+.+++.+.+.+.+. +.+...++|+++. ...||++++++
T Consensus 596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~~-~~tvI~isH~~~~-------~~~~d~il~l~ 652 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREF-GITLFSVSHRKSL-------WKYHEYLLYMD 652 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEeCchHH-------HHhCCEEEEEe
Confidence 99999998888 7877777777777765 4478888999987 47899999886
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=3.1e-18 Score=141.65 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=96.4
Q ss_pred HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+.++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++....
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~~ 68 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLP-SAITYIKGANGCGKSSLLRMIAGIMQ------------PSSGNIYYKNCNINNIA 68 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCcccChhh
Confidence 345677778765 44458888888 99999999999999999999999986 55555 4555432111
Q ss_pred HHHHHHHhhcc------chhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263 145 KEEFLQMVDKN------ELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209 (286)
Q Consensus 145 ~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il 209 (286)
........+.. ...++..+....++ ..+.+.+. .......+.+|++|++.++++++.+|+++|+
T Consensus 69 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lll 147 (195)
T PRK13541 69 KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147 (195)
T ss_pred hhhEEeccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000000111 11111111111111 11122222 2223345678899999999999988887777
Q ss_pred ------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 210 ------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 210 ------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
+|+.+...+.+.+.. ..+.+...++|+... +..+|.|
T Consensus 148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-------i~~~~~~ 192 (195)
T PRK13541 148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-------IKSAQIL 192 (195)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-------cchhhee
Confidence 666666666665542 122355556776665 4556554
No 321
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.1e-17 Score=146.12 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=112.1
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. .|+++++.+.+ |++++|+|+||||||||+++|+|++.... ..|..|+ ++|.++..
T Consensus 39 ~l~i~~l~~~~~~~~il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 39 VIEARDLNVFYGDEQALDDVSMDIPE-NQVTAMIGPSGCGKSTFLRCINRMNDLID-------AARVEGELTFRGKNVYD 110 (285)
T ss_pred eEEEEEEEEEECCEeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCccc-------CCCCceEEEECCEEccc
Confidence 4788999999975 79999999998 99999999999999999999999874100 0023343 44443321
Q ss_pred e--CHHHHHHHh---hcc------chhhhheecccccCcc---HHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263 143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGIP---KKQIREY-------------MAKGYDIVLRVDIQGAR 195 (286)
Q Consensus 143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~---~~~i~~~-------------~~~g~~~v~~~~~q~v~ 195 (286)
. ....++..+ .+. ...++..+.....+.. .+.+.++ +......+++|++|++.
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred cccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 1 111111111 111 1111111100000111 1112221 23334567789999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEE-ECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVV-VNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~vi-v~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+.. ..+...++|++... ...||+++ ++++|++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i------~~~~dri~v~l~~G~i 258 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA------ARISDKTAVFLTGGEL 258 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCEEEEEeeCCEE
Confidence 99999988988888 77777777777776542 23666778988875 36799864 5577765
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1e-17 Score=161.38 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=115.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC-Cccee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN-GKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~-g~~~~ 141 (286)
.+.++||++.|+. +|.++++.+.+ |++++|+||||||||||+++|+|++. |.+|+ ++ +..+.
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVP-GSRIGLLGRNGAGKSTLIKLLAGELA------------PVSGEIGLAKGIKLG 378 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEECCCEEEE
Confidence 5889999999986 78999999998 99999999999999999999999986 55555 21 22222
Q ss_pred eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-- 209 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-- 209 (286)
++.+.....+.......++..... .......+... .......+++|++||+.+|++++..|+++|+
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLA--PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhC--chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 222211100000011111110000 00111122222 1223345778999999999999988888888
Q ss_pred ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+..+ +...++|++... ...||+|+++++|.+
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd~~~~------~~~~d~i~~l~~G~i 505 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEG-ALVVVSHDRHLL------RSTTDDLYLVHDGKV 505 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 888878888888877654 777889988764 367999999988865
No 323
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=8.5e-18 Score=175.32 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=121.6
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||++.|+. +++++++.+.+ |+++||+|||||||||++++|+|+.. |+.|+ ++|.+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~-GEi~gLLG~NGAGKTTLlkmL~Gll~------------ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRP-GECFGLLGVNGAGKTTTFKMLTGDTT------------VTSGDATVAGKS 2002 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcC-CcEEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECCEE
Confidence 34788999999973 79999999998 99999999999999999999999986 77777 67766
Q ss_pred eeeeCHHHHHHHh----hccch------hhhheecccccCccHHHH----HHH---------HhcCCcEEEEeCHHHHHH
Q 043263 140 YFFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQI----REY---------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 140 ~~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i----~~~---------~~~g~~~v~~~~~q~v~i 196 (286)
+.. .....+..+ +...+ .++...+...++...+.+ .+. ..+....+++|++|++.+
T Consensus 2003 i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2003 ILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred Ccc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 532 112222211 22222 222222223334332221 121 222335677899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++++ ||+.+...+++.|.+. .+.+...++|.++.. ...||+|+++.+|++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~------e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC------EALCTRLAIMVKGAF 2148 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999988888888 7777777777766542 234667779988875 368999999988854
No 324
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.4e-17 Score=143.11 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=110.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++||++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+.+... ..|+.|+ ++|.++...
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPK-NSVTALIGPSGCGKSTFIRTLNRMNDLIP-------GFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhccCC-------CCCCccEEEECCEEcccc
Confidence 456788888874 78999999998 99999999999999999999999752000 0013444 455443211
Q ss_pred --CHHHHHHHh----hcc-----chhhhheecccccCc-cH----HHHH-------------HHHhcCCcEEEEeCHHHH
Q 043263 144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-PK----KQIR-------------EYMAKGYDIVLRVDIQGA 194 (286)
Q Consensus 144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~~----~~i~-------------~~~~~g~~~v~~~~~q~v 194 (286)
+....+..+ ++. ...++..+....++. .. +.+. ..+......+++|++|++
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 111111111 111 111111110000110 11 1111 112333455778899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.++++++.+|+++++ ||+.+...+.+.|.+.. +.+...++|++... ...||+++++++|++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~------~~~~~~i~~l~~G~i 223 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA------TRVSKYTSFFLNGEI 223 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHH------HhhcCEEEEEECCeE
Confidence 999999988888887 77776777777666532 33566778888775 467999988887865
No 325
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.66 E-value=2.5e-17 Score=139.13 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=101.6
Q ss_pred HHhHhHHHHhc---------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263 68 ELLRSLEASLG---------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN 136 (286)
Q Consensus 68 i~~~~v~~~~~---------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~ 136 (286)
++++|+++.|+ .+++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~ 68 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNA-GECVALSGPSGAGKSTLLKSLYANYL------------PDSGRILVR 68 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEEe
Confidence 34667777774 268899999998 99999999999999999999999986 44454 33
Q ss_pred --Cc--ceeeeCHHHH---H-H---Hhhcc-chh------hhheecccccCcc----HHHHHHHH----------hcCCc
Q 043263 137 --GK--DYFFVSKEEF---L-Q---MVDKN-ELL------EYALVYGDYKGIP----KKQIREYM----------AKGYD 184 (286)
Q Consensus 137 --g~--~~~~~~~~~~---~-~---~i~~~-~~~------~~~~~~~~~~~~~----~~~i~~~~----------~~g~~ 184 (286)
|. ++...+...+ + . .+.+. .+. ++........+.. .+.+.+++ .....
T Consensus 69 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (224)
T TIGR02324 69 HEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPA 148 (224)
T ss_pred cCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcc
Confidence 21 2211121111 0 0 01111 111 1111000001111 11222221 12234
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
.+++|++|++.++++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+.+.. ...||+++..
T Consensus 149 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~------~~~~d~i~~~ 222 (224)
T TIGR02324 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR------ELVADRVMDV 222 (224)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcceeEec
Confidence 4667889999999999988888777 7776677776666543 233666778887763 2578888765
No 326
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.66 E-value=1.9e-17 Score=156.82 Aligned_cols=175 Identities=13% Similarity=0.113 Sum_probs=114.6
Q ss_pred HHHhHhHHHHhc-----------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC
Q 043263 67 IELLRSLEASLG-----------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG 133 (286)
Q Consensus 67 ~i~~~~v~~~~~-----------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G 133 (286)
.++++|+++.|+ . +|+++++.+.+ |++++|+||||||||||+++|+|+++ .+|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLlk~l~Gl~~-------------~~G 340 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP-GETLGLVGESGSGKSTTGLALLRLIN-------------SQG 340 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhCcCC-------------CCc
Confidence 589999999994 2 68999999998 99999999999999999999999873 334
Q ss_pred C--cCCcceeeeCHHHH---HHH---hhcc---------chhhhheecccccC--cc----HHHHHHH----------Hh
Q 043263 134 E--VNGKDYFFVSKEEF---LQM---VDKN---------ELLEYALVYGDYKG--IP----KKQIREY----------MA 180 (286)
Q Consensus 134 ~--~~g~~~~~~~~~~~---~~~---i~~~---------~~~~~~~~~~~~~~--~~----~~~i~~~----------~~ 180 (286)
+ ++|.++...+.... +.. +.+. ...++.......++ .. .+.+.+. ..
T Consensus 341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence 4 45544432222111 111 1111 11111111000010 11 1112222 12
Q ss_pred cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
.....+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~------~~~~d 494 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV------RALCH 494 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HHhcC
Confidence 23356778999999999999988888887 7777677777766642 234777889998875 36799
Q ss_pred EEEECCCCCH
Q 043263 252 YVVVNAEGKL 261 (286)
Q Consensus 252 ~viv~~~G~i 261 (286)
+|+++++|++
T Consensus 495 ~i~~l~~G~i 504 (529)
T PRK15134 495 QVIVLRQGEV 504 (529)
T ss_pred eEEEEECCEE
Confidence 9999999876
No 327
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2e-17 Score=142.92 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=107.9
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
+.++++++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|++..... .+..|+ ++|.++...
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHVPIRK-NEITGFIGPSGCGKSTVLRSLNRMNDLVKG-------FRFEGHVHFLGQDVYGK 80 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccccccC-------CCCceEEEECCEecccc
Confidence 344555666764 68899999998 999999999999999999999999751000 013454 556544211
Q ss_pred --CHHHHHHHh----hccc-----hhhhheecccccCc---cHHHHHHHHh-------------cCCcEEEEeCHHHHHH
Q 043263 144 --SKEEFLQMV----DKNE-----LLEYALVYGDYKGI---PKKQIREYMA-------------KGYDIVLRVDIQGART 196 (286)
Q Consensus 144 --~~~~~~~~i----~~~~-----~~~~~~~~~~~~~~---~~~~i~~~~~-------------~g~~~v~~~~~q~v~i 196 (286)
....++..+ ++.. ..++..+....+.. ..+.+.++++ .....+.+|+.|++.+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred ccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 111112211 1111 11111111000000 0112222221 2223467889999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|++++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i------~~~~d~v~~l~ 222 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA------IRVADTTAFFS 222 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEe
Confidence 9999988888888 78777778877777642 33566678988865 37899999984
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.4e-17 Score=157.81 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=110.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeeeC
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFVS 144 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~~ 144 (286)
++++|+++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++...+.+. ++|. .+.++.
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~----------~~~~~~i~~~~ 70 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGG-GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS----------LDPNERLGKLR 70 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----------ecCCCEEEEEe
Confidence 456788999975 78999999998 999999999999999999999999863333222 2221 111111
Q ss_pred H----------HH-HHHHh--------------hccch--------hhhheecccccCcc-HHHHHHHH----------h
Q 043263 145 K----------EE-FLQMV--------------DKNEL--------LEYALVYGDYKGIP-KKQIREYM----------A 180 (286)
Q Consensus 145 ~----------~~-~~~~i--------------~~~~~--------~~~~~~~~~~~~~~-~~~i~~~~----------~ 180 (286)
+ .+ +.... ..... .+....+...++.. .+.+.+++ .
T Consensus 71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 150 (530)
T PRK15064 71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY 150 (530)
T ss_pred ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence 1 00 00000 00000 00000000000000 11122221 1
Q ss_pred cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
.....+++|++|++++|++++.+|+++++ ||+.+...+.+.|.+. +.+...++|+++.. ...||+|+
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~------~~~~d~i~ 223 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-NSTMIIISHDRHFL------NSVCTHMA 223 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CCeEEEEeCCHHHH------HhhcceEE
Confidence 12355778999999999999988888888 7887777787777654 34777889988875 36799999
Q ss_pred ECCCCCH
Q 043263 255 VNAEGKL 261 (286)
Q Consensus 255 v~~~G~i 261 (286)
++++|++
T Consensus 224 ~l~~g~i 230 (530)
T PRK15064 224 DLDYGEL 230 (530)
T ss_pred EEeCCEE
Confidence 9988875
No 329
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.65 E-value=4.1e-17 Score=140.91 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=103.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc-eeeeCHHHHHHHhhccc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD-YFFVSKEEFLQMVDKNE 156 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~-~~~~~~~~~~~~i~~~~ 156 (286)
.+.++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.. +..... .......
T Consensus 39 il~~is~~i~~-Ge~~~liG~NGsGKSTLlk~L~Gl~~------------p~~G~I~~~g~~~~~~~~~----~~~~~~t 101 (264)
T PRK13546 39 ALDDISLKAYE-GDVIGLVGINGSGKSTLSNIIGGSLS------------PTVGKVDRNGEVSVIAISA----GLSGQLT 101 (264)
T ss_pred EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEeEEeccc----CCCCCCc
Confidence 68889999998 99999999999999999999999986 44444 33321 100000 0000001
Q ss_pred hhhhheecccccCccHHHH-------------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263 157 LLEYALVYGDYKGIPKKQI-------------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA 217 (286)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~i-------------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~ 217 (286)
..++.......++...+.. ...+......+++|++|++.+|++++.+|+++|+ ||+.+...
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 102 GIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence 1111110000001111111 1112333456778899999999999988888887 66666666
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH------HHHHHHHHHHHH
Q 043263 218 LVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL------DSAVKLVESVID 273 (286)
Q Consensus 218 l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i------~~~~~~l~~~i~ 273 (286)
+.+.|.+. .+.+...++|.+... ...||+|+++++|.+ ++...+....+.
T Consensus 182 l~~~L~~~~~~g~tiIiisH~~~~i------~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 182 CLDKIYEFKEQNKTIFFVSHNLGQV------RQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHH------HHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHH
Confidence 66666542 234677778887764 357999999887754 444454444443
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=3.4e-17 Score=155.78 Aligned_cols=171 Identities=18% Similarity=0.174 Sum_probs=111.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-CCc--cee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-NGK--DYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-~g~--~~~ 141 (286)
.+.++||++.|+. .|.++++.+.+ |++++|+|+||||||||+++|+|++. |..|++ .+. .+.
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~------------p~~G~i~~~~~~~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPP-GGIVGIIGPNGAGKSTLFKMITGQEQ------------PDSGTIKIGETVKLA 390 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCceEEE
Confidence 4889999999976 79999999998 99999999999999999999999986 444441 121 122
Q ss_pred eeCHHHHHHHhhccchhhhheecccccCc--cHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGDYKGI--PKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il 209 (286)
++.++. ..........++.......++. ........ .......+++|++|++.+|++++.+|+++|+
T Consensus 391 ~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 391 YVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred EEeCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222211 0111111122221110000000 01111111 1223346778999999999999988888888
Q ss_pred ------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 ------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+..+ +...++|.++.. ...||+|+++++
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~------~~~~d~i~~l~~ 517 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFPG-CAVVISHDRWFL------DRIATHILAFEG 517 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHH------HHhCCEEEEEEC
Confidence 788778888887777644 667779988764 367999988864
No 331
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.8e-17 Score=154.32 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=116.3
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.++++|+++.+...++++++.+.+ |++++|+|+||||||||+++|+|+.. |..|+ ++|.++...+
T Consensus 250 ~i~~~~l~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 250 ILEVRNLTSLRQPSIRDVSFDLHK-GEILGIAGLVGAKRTDIVETLFGIRE------------KSAGTITLHGKKINNHN 316 (491)
T ss_pred EEEEeCcccccCcccceeeEEEeC-CcEEEEecCCCCCHHHHHHHHcCCCc------------CCccEEEECCEECCCCC
Confidence 478899998864479999999998 99999999999999999999999986 55555 4555443222
Q ss_pred HHHH-HHH---hhcc----------chhhhheecc------cccCc-c----HHHHHHHH----------hcCCcEEEEe
Q 043263 145 KEEF-LQM---VDKN----------ELLEYALVYG------DYKGI-P----KKQIREYM----------AKGYDIVLRV 189 (286)
Q Consensus 145 ~~~~-~~~---i~~~----------~~~~~~~~~~------~~~~~-~----~~~i~~~~----------~~g~~~v~~~ 189 (286)
.... +.. +.+. .+.++ .... ..++. . .+.+.+.+ ......+++|
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 395 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFN-SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGG 395 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHh-eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcH
Confidence 2111 110 1111 11111 1111 00111 1 11112211 1223467789
Q ss_pred CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++.+|++++.+|+++|+ ||+.+.+.+.+.+.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~------~~~~d~v~~l~~g~i 469 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPEL------LGITDRILVMSNGLV 469 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHH------HhhCCEEEEEECCEE
Confidence 99999999999989988888 8888888887766442 234777889988875 478999999988875
Q ss_pred H
Q 043263 262 D 262 (286)
Q Consensus 262 ~ 262 (286)
.
T Consensus 470 ~ 470 (491)
T PRK10982 470 A 470 (491)
T ss_pred E
Confidence 3
No 332
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.5e-17 Score=154.19 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=113.9
Q ss_pred HHHhHhHHHHhc---c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 67 IELLRSLEASLG---H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 67 ~i~~~~v~~~~~---~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
.++++||++.|+ . +++++++.+.+ |++++|+|+||||||||+++|+|++.+ |.+|+ ++|.+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~~~G~i~~~g~~ 326 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRR-GEILGIAGLVGAGRTELVQCLFGAYPG-----------RWEGEIFIDGKP 326 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcC-CcEEEEeCCCCCCHHHHHHHHhCCCCC-----------CCCcEEEECCEE
Confidence 478999999993 2 68999999998 999999999999999999999998751 24554 44544
Q ss_pred eeeeCHH-HHHHH---hhcc----------chhhhheec--ccccC---cc----HHHHHHHHhc----------CCcEE
Q 043263 140 YFFVSKE-EFLQM---VDKN----------ELLEYALVY--GDYKG---IP----KKQIREYMAK----------GYDIV 186 (286)
Q Consensus 140 ~~~~~~~-~~~~~---i~~~----------~~~~~~~~~--~~~~~---~~----~~~i~~~~~~----------g~~~v 186 (286)
+...... ..+.. +.+. ...++..+. ...+. .. .+.+.+.++. ....+
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 406 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL 406 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccC
Confidence 3211111 11110 1111 111111110 00000 01 1122222211 12356
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~------~~~~d~v~~l~~ 480 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV------LGLSDRVLVMHE 480 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH------HHhCCEEEEEEC
Confidence 78999999999999988888888 7877777776665542 234777889998875 368999999998
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 481 G~i 483 (506)
T PRK13549 481 GKL 483 (506)
T ss_pred CEE
Confidence 875
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.4e-16 Score=123.65 Aligned_cols=184 Identities=17% Similarity=0.144 Sum_probs=111.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~ 144 (286)
-+.++++++.|+. ...++++.+.| |++.+|+|.||||||||+++|++.+.+..+.+.|..|.-. -.+++.++
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~P-GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~-----~~dl~~ms 79 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYP-GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ-----PRDLYTMS 79 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecC-CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC-----chhHhhhc
Confidence 4678999999987 79999999999 9999999999999999999999988744444443322110 01333344
Q ss_pred HHHHHHHh-hccchh-------------------hhheecc-cccCccHHHHHHHHh----------cCCcEEEEeCHHH
Q 043263 145 KEEFLQMV-DKNELL-------------------EYALVYG-DYKGIPKKQIREYMA----------KGYDIVLRVDIQG 193 (286)
Q Consensus 145 ~~~~~~~i-~~~~~~-------------------~~~~~~~-~~~~~~~~~i~~~~~----------~g~~~v~~~~~q~ 193 (286)
..+-+.+. .+..|+ |.....+ ..|+-...+..++++ .-..++.+|-.||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 44433332 111121 1111111 134433344444433 2234566777899
Q ss_pred HHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 194 ARTLRRILGDSAVFVFLAAES-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 194 v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
+.|||.+.. .+.++|+|.|+ ...+..-++.. -+....+++|++..+ .-.+|+..++.+|.+.|
T Consensus 160 LQiARnLVt-~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va------rLla~rlmvmk~g~vve 232 (258)
T COG4107 160 LQIARNLVT-RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA------RLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHhcc-CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH------HHhhhcceeecCCCEec
Confidence 999999994 45556655554 33333333322 122445668988876 35688888888876543
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.1e-17 Score=131.90 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=97.6
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE 146 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~ 146 (286)
+++++.|.. .+.++++.+.+ |++++|+|+|||||||++++|++.+. +..|+ ++|.+.......
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~-g~~~~i~G~nGsGKStll~~l~g~~~------------~~~G~i~~~~~~~~~~~~~ 69 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKA-GEIVALVGPNGSGKSTLLRAIAGLLK------------PTSGEILIDGKDIAKLPLE 69 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEEcccCCHH
Confidence 455666653 68888888887 99999999999999999999999876 55565 455433211111
Q ss_pred HHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE 220 (286)
Q Consensus 147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~ 220 (286)
.+...+ .+.. . +.+|+.+++.++++++..|+++++ +|..+...+.+
T Consensus 70 ~~~~~i---~~~~------------q-------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 70 ELRRRI---GYVP------------Q-------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121 (157)
T ss_pred HHHhce---EEEe------------e-------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 110000 0000 0 667899999999999988877777 66665666766
Q ss_pred HHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 221 RLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 221 rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
.+.+.. +.+...++|+++.. ...||+++++++|+
T Consensus 122 ~l~~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~g~ 157 (157)
T cd00267 122 LLRELAEEGRTVIIVTHDPELA------ELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCcC
Confidence 666432 23666778888774 24579999887753
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.64 E-value=2.4e-17 Score=156.83 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=111.7
Q ss_pred HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee--
Q 043263 67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-- 141 (286)
Q Consensus 67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~-- 141 (286)
.++++||++.|+ . .|+++++.+.+ |++++|+||||||||||+++|+|++....+.+..... ...|.+......
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~-Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-IKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCCCC
Confidence 377899999997 4 79999999998 9999999999999999999999998633333321100 000001000000
Q ss_pred eeCHHH-HHHHhhc-----cch--h-hhheecc------------------c--ccCccHHHHHHHH--------hcCCc
Q 043263 142 FVSKEE-FLQMVDK-----NEL--L-EYALVYG------------------D--YKGIPKKQIREYM--------AKGYD 184 (286)
Q Consensus 142 ~~~~~~-~~~~i~~-----~~~--~-~~~~~~~------------------~--~~~~~~~~i~~~~--------~~g~~ 184 (286)
..+..+ +...... ..+ . ....... . .+. ..+.+.+++ .....
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD-LDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc-hHHHHHHHHHhCCCCcccCchh
Confidence 001100 0000000 000 0 0000000 0 000 011222222 12234
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
.+++|++|++.+|++++.+|+++|+ ||+.+...+.+.|.+..+ +...++|+++.. ...||+|+++++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~-tviiisHd~~~~------~~~~d~i~~l~~ 235 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG-TVVAVTHDRYFL------DNVAGWILELDR 235 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcCeEEEEeC
Confidence 5778999999999999988888888 777777777777776654 777789988875 367999999988
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|.+
T Consensus 236 g~i 238 (556)
T PRK11819 236 GRG 238 (556)
T ss_pred CEE
Confidence 864
No 336
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.64 E-value=1.9e-17 Score=140.15 Aligned_cols=174 Identities=14% Similarity=0.184 Sum_probs=105.3
Q ss_pred HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcc
Q 043263 69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKD 139 (286)
Q Consensus 69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~ 139 (286)
.+.||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|+++ ...+.+. ++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~----------~~g~~ 73 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDVSLHVES-GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL----------FNGQP 73 (226)
T ss_pred eeecceeeeecCccccccccCceEEEcC-CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE----------ECCEE
Confidence 45677777742 58888888887 99999999999999999999999875 3333332 33432
Q ss_pred eeeeCHHHHHHHh----hcc------chhhhheeccccc---Ccc----HHHHHH-HH---------hcCCcEEEEeCHH
Q 043263 140 YFFVSKEEFLQMV----DKN------ELLEYALVYGDYK---GIP----KKQIRE-YM---------AKGYDIVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i----~~~------~~~~~~~~~~~~~---~~~----~~~i~~-~~---------~~g~~~v~~~~~q 192 (286)
+. ...++..+ +.. ...++..+..... ... ...+.+ .+ ......+++|+.|
T Consensus 74 ~~---~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 150 (226)
T cd03234 74 RK---PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERR 150 (226)
T ss_pred CC---hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHH
Confidence 21 00111100 000 1111111100000 000 011111 11 2223456678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHH-HHHHHHhhccCCCcEEEECCCCCHH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRI-ATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl-~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++.++++++.+|+++|+ ||+.+...+.+.+.+. .+.+...++|++ ... ...||+++++++|++.
T Consensus 151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~------~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL------FRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH------HHhCCEEEEEeCCEEE
Confidence 99999999988888877 7776677777766643 234666778876 333 4789999999998763
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.64 E-value=1.7e-17 Score=173.09 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=121.8
Q ss_pred HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++||++.|+ . +++++++.+.+ |++++|+|+|||||||++++|+|++. |++|+ ++|.++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~-Gei~aLLG~NGAGKSTLLkiLaGLl~------------PtsG~I~i~G~dI 994 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYE-NQITAFLGHNGAGKTTTLSILTGLLP------------PTSGTVLVGGKDI 994 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcC-CcEEEEECCCCChHHHHHHHHhcCCC------------CCceEEEECCEEC
Confidence 578999999995 2 79999999998 99999999999999999999999986 77776 677765
Q ss_pred eeeCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263 141 FFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 141 ~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia 197 (286)
.. ....++..+ ++..+ .++..++...++... +.+.+.+ ......+++|++|++.+|
T Consensus 995 ~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred cc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 32 222233221 22111 223222222233322 1222322 222345778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++.+|+++|+ ||+.+...+++.|.+. .+.+...++|.++.+ ...||+|+++++|++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea------~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA------DLLGDRIAIISQGRL 1138 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 999988888887 7777677777776654 233667779988875 368999999998875
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.64 E-value=2.2e-17 Score=159.26 Aligned_cols=174 Identities=12% Similarity=0.100 Sum_probs=113.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-CCcc--ee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-NGKD--YF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-~g~~--~~ 141 (286)
.++++||++.|+. .+.++++.+.+ |++++|+||||||||||+++|+|++. |..|++ .|.+ +.
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~~~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQR-GDKIALIGPNGCGKTTLLKLMLGQLQ------------ADSGRIHCGTKLEVA 385 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCCcEEE
Confidence 4789999999976 78999999998 99999999999999999999999976 445541 1322 22
Q ss_pred eeCHHHHHHHhhccchhhhheeccccc--CccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGDYK--GIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il 209 (286)
++.+.. ..+.......++........ .-....+... .......+++|++||+.+|++++.+|+++|+
T Consensus 386 y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 386 YFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred EEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222211 01111112222211100000 0001112221 1223356778999999999999988888888
Q ss_pred ------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC-CCCH
Q 043263 210 ------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA-EGKL 261 (286)
Q Consensus 210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~-~G~i 261 (286)
||..+.+.+.+.|.+.++ +...++|+.... ...||+|++++ +|.+
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~-tvi~vSHd~~~~------~~~~d~i~~l~~~g~i 516 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQG-TVLLVSHDRQFV------DNTVTECWIFEGNGKI 516 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHH------HHhcCEEEEEeCCCeE
Confidence 787777777777766544 777889988764 36799999986 6654
No 339
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.8e-17 Score=146.18 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=111.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.+.++||++.|+. +|+++++.+.+ |++++|+|+||||||||+++|+|++..+.. .|..|+ ++|.++..
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~-Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~-------~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPE-KSVTALIGPSGCGKSTFLRCLNRMNDRIKA-------ARIDGSVELDGQDIYQ 116 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEccc
Confidence 4788999999975 79999999998 999999999999999999999998631000 023443 44443321
Q ss_pred e--CHHHHHHHh---hcc------chhhhheecc------------cccCcc-----HHHHHHH-------------Hhc
Q 043263 143 V--SKEEFLQMV---DKN------ELLEYALVYG------------DYKGIP-----KKQIREY-------------MAK 181 (286)
Q Consensus 143 ~--~~~~~~~~i---~~~------~~~~~~~~~~------------~~~~~~-----~~~i~~~-------------~~~ 181 (286)
. ....++..+ .+. ...++..+.. ..++.. .+.+.++ +..
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred ccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 1 111111111 111 1111111100 000010 1112221 122
Q ss_pred CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEE-
Q 043263 182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYV- 253 (286)
Q Consensus 182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~v- 253 (286)
....+++|+.|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. ..+...++|+++.. ...||++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i------~~~~d~i~ 270 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQA------ARISDQTA 270 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhcCEEE
Confidence 3345677899999999999988888888 78777777777776542 23566678988875 3679986
Q ss_pred EECCCCCH
Q 043263 254 VVNAEGKL 261 (286)
Q Consensus 254 iv~~~G~i 261 (286)
+++++|++
T Consensus 271 ~~l~~G~i 278 (305)
T PRK14264 271 VFLTGGEL 278 (305)
T ss_pred EEecCCEE
Confidence 45677765
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.64 E-value=2.6e-17 Score=171.51 Aligned_cols=168 Identities=17% Similarity=0.312 Sum_probs=117.1
Q ss_pred HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++|++|.|+. .|+++++.+++ |++++|+||||||||||+++|+|+++ |..|+ ++|. +
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~-G~~v~IvG~~GsGKSTLl~~l~g~~~------------~~~G~i~~~g~-i 701 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPE-GALVAVVGQVGCGKSSLLSALLAEMD------------KVEGHVHMKGS-V 701 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCc------------cCCcEEEECCE-E
Confidence 5889999999963 69999999998 99999999999999999999999987 55565 3442 3
Q ss_pred eeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCC--------cEEEEeCHHHHHHHHHH
Q 043263 141 FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGY--------DIVLRVDIQGARTLRRI 200 (286)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~--------~~v~~~~~q~v~iaral 200 (286)
.+++++.+ +..+...+|.. ++..+ ..+... ..++.|. ..+.+||+||+++||++
T Consensus 702 ~yv~Q~~~---l~~~Ti~eNI~-~g~~~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 702 AYVPQQAW---IQNDSLRENIL-FGKAL--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEcCCcc---ccCCcHHHHhh-cCCcc--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 33332211 11223333322 22111 111111 1123333 34567899999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 201 LGDSAVFVF------LAAESEMALVERLVE----RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|+++++ ||+.+...+.+.+.+ ..+.|...++|+++. ...||+|+++++|++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-------l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-------LPQVDVIIVMSGGKI 839 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-------hhhCCEEEEecCCeE
Confidence 999999999 888878888887753 123477788998877 466999999998875
No 341
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.64 E-value=2.5e-17 Score=143.41 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=106.3
Q ss_pred hhHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 65 NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
...++++|+++.....++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|. +.+
T Consensus 37 ~~~l~i~nls~~~~~vL~~vs~~i~~-Ge~~~liG~NGsGKSTLl~~I~Gl~~------------p~~G~I~i~g~-i~y 102 (282)
T cd03291 37 DNNLFFSNLCLVGAPVLKNINLKIEK-GEMLAITGSTGSGKTSLLMLILGELE------------PSEGKIKHSGR-ISF 102 (282)
T ss_pred CCeEEEEEEEEecccceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCE-EEE
Confidence 34578888887533389999999998 99999999999999999999999986 55555 3341 222
Q ss_pred eCHHHHHHHhhccchhhhheecccccCccHHH------HHHH---Hhc--------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ------IREY---MAK--------GYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------i~~~---~~~--------g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
+.+.. .. ......++..+........... +... +.. ....+++|++|++.+|++++.+|+
T Consensus 103 v~q~~--~l-~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 103 SSQFS--WI-MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EeCcc--cc-cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 22111 00 0011122211100000000000 0111 111 123566789999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHH-Hh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLV-ER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~-~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.+. .. .+.+...++|++... ..||+++++++|++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-------~~~d~i~~l~~G~i 236 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS 236 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-------HhCCEEEEEECCEE
Confidence 8887 66665665655442 22 233666778887763 46999999988865
No 342
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.64 E-value=8.2e-17 Score=151.56 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=113.8
Q ss_pred HHHhHhHHHHh---cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 67 IELLRSLEASL---GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 67 ~i~~~~v~~~~---~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
.++++|+++.| +. .++++++.+.+ |++++|+||||||||||+++|+|++.+ +.+|+ ++|.+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~~G~i~~~g~~ 324 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRR-GEILGVAGLVGAGRTELVQALFGAYPG-----------KFEGNVFINGKP 324 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeC-CcEEEEeCCCCCCHHHHHHHHhCCCCC-----------CCCeEEEECCEE
Confidence 47899999998 22 78999999998 999999999999999999999999751 13454 44544
Q ss_pred eeeeCH-HHHHHHh---hcc----------chhhhhee-----cccccCcc----HHHHHHHHhc----------CCcEE
Q 043263 140 YFFVSK-EEFLQMV---DKN----------ELLEYALV-----YGDYKGIP----KKQIREYMAK----------GYDIV 186 (286)
Q Consensus 140 ~~~~~~-~~~~~~i---~~~----------~~~~~~~~-----~~~~~~~~----~~~i~~~~~~----------g~~~v 186 (286)
+..... ..++..+ .+. ...++... ....+... .+.+.++++. ....+
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence 321111 1111111 111 11111111 00000111 1123333221 12356
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
++|++|++.+|++++.+|+++|+ ||+.+...+.+.+.+. .+.+...++|+++.. ...||+++++++
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~------~~~~d~v~~l~~ 478 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV------LGLSDRVLVIGE 478 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEEC
Confidence 78999999999999988888888 7877777776655542 234677789988875 468999999988
Q ss_pred CCHH
Q 043263 259 GKLD 262 (286)
Q Consensus 259 G~i~ 262 (286)
|++.
T Consensus 479 G~i~ 482 (500)
T TIGR02633 479 GKLK 482 (500)
T ss_pred CEEE
Confidence 8753
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.3e-17 Score=157.91 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=110.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc-eee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD-YFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~-~~~ 142 (286)
+.++||++.|+. .|+++++.+.+ |+++||+||||||||||+++|+|.+. |++|+ ++|.. +.+
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~-Ge~v~LvG~NGsGKSTLLkiL~G~~~------------pd~G~I~~~~~~~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINP-GQKVGLVGKNGCGKSTLLALLKNEIS------------ADGGSYTFPGNWQLAW 68 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEecCCCEEEE
Confidence 457889999986 78999999998 99999999999999999999999876 44444 22221 100
Q ss_pred eC-------HHHHHHHhhccchh-----------------hhheecc---cccC-ccHHHHHHHH----------hcCCc
Q 043263 143 VS-------KEEFLQMVDKNELL-----------------EYALVYG---DYKG-IPKKQIREYM----------AKGYD 184 (286)
Q Consensus 143 ~~-------~~~~~~~i~~~~~~-----------------~~~~~~~---~~~~-~~~~~i~~~~----------~~g~~ 184 (286)
+. ...+....+....+ ....... ...+ .....+...+ .....
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 00 00011110000000 0000000 0000 0111222222 22234
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
.+++|++||+.+|++++.+|+++|| ||+.+...+.+.|.+.++ +...++|+.... ...||+|+++++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~-tviivsHd~~~l------~~~~d~i~~L~~ 221 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG-TLILISHDRDFL------DPIVDKIIHIEQ 221 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HHhcCEEEEEeC
Confidence 5678999999999999988888888 777777777776766543 777889988774 367999999998
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|.+
T Consensus 222 G~i 224 (638)
T PRK10636 222 QSL 224 (638)
T ss_pred CEE
Confidence 875
No 344
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=1.4e-16 Score=131.88 Aligned_cols=159 Identities=17% Similarity=0.093 Sum_probs=103.7
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-hccc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV-DKNE 156 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i-~~~~ 156 (286)
+|+++++.+.+ |+.+||+|+||||||||+++|+|.++ |+.|+ +.|.-...+ ++..-+ ++-+
T Consensus 42 aL~disf~i~~-Ge~vGiiG~NGaGKSTLlkliaGi~~------------Pt~G~v~v~G~v~~li---~lg~Gf~pelT 105 (249)
T COG1134 42 ALKDISFEIYK-GERVGIIGHNGAGKSTLLKLIAGIYK------------PTSGKVKVTGKVAPLI---ELGAGFDPELT 105 (249)
T ss_pred EecCceEEEeC-CCEEEEECCCCCcHHHHHHHHhCccC------------CCCceEEEcceEehhh---hcccCCCcccc
Confidence 79999999998 99999999999999999999999997 77777 445311100 000000 1112
Q ss_pred hhhhheecccccCccHHHHHHHH-------------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263 157 LLEYALVYGDYKGIPKKQIREYM-------------AKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA 217 (286)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~i~~~~-------------~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~ 217 (286)
-.+|....+..+|...+++++.. ..-..+.+.|-.-|++.+-+...+|+++|+ -|+.=.+.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 23444455555566655554432 222223334555778888777778888888 33333344
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 218 LVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 218 l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
..+|+.+. .+.+...+.|.+... .+.||+++++++|.
T Consensus 186 ~~~rl~e~~~~~~tiv~VSHd~~~I------~~~Cd~~i~l~~G~ 224 (249)
T COG1134 186 CLERLNELVEKNKTIVLVSHDLGAI------KQYCDRAIWLEHGQ 224 (249)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHH------HHhcCeeEEEeCCE
Confidence 55666654 234667779988886 47899999999984
No 345
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.62 E-value=5.2e-17 Score=156.85 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=115.7
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++|+++.|+. .++++++.+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|++
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~ 71 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYA-GEMVAIVGASGSGKSTLMNILGCLDK------------PTSGTYRVAGQD 71 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEE
Confidence 667888888841 68999999998 99999999999999999999999986 66666 67776
Q ss_pred eeeeCHHHHHH----Hh----hccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHH
Q 043263 140 YFFVSKEEFLQ----MV----DKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~----~i----~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q 192 (286)
+...+..++.. .+ ++..++++.....+ ..+...+ .+.+. +......+.+|+.|
T Consensus 72 i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 72 VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred cCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 65444433211 11 11111111111111 1111111 11222 23334556778999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+||+++.+|+++|+ ||+.+.+.+.+.+.+. .+.+...++|+++. ...||+++++++|++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~-------~~~~d~i~~l~~G~i 221 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV-------AAQAERVIEIRDGEI 221 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-------HHhCCEEEEEECCEE
Confidence 99999999988888887 7777677776666543 23466777898876 346999999988865
No 346
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.62 E-value=9.4e-17 Score=152.74 Aligned_cols=173 Identities=15% Similarity=0.126 Sum_probs=110.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFV 143 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~ 143 (286)
.++++|+++.|+. .|.++++.+.+ |++++|+||||||||||+++|+|++....+.+. +++. .+.++
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~----------~~~~~~i~~v 390 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPP-GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK----------IGETVKLAYV 390 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE----------ECCceEEEEE
Confidence 4789999999975 79999999998 999999999999999999999999763333332 1111 12222
Q ss_pred CHHHHHHHhhccchhhhheecccccCcc--HHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIP--KKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-- 209 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-- 209 (286)
.++. ..........++.......++.. .....+. .......+++|++|++.+|++++.+|+++|+
T Consensus 391 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 391 DQSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred eCCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 2110 00000111111111100000000 1111111 1222345778999999999999988888888
Q ss_pred ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+..+ +...++|+++.. ...||+|+++++
T Consensus 470 Pt~~LD~~~~~~l~~~l~~~~~-~viivsHd~~~~------~~~~d~i~~l~~ 515 (552)
T TIGR03719 470 PTNDLDVETLRALEEALLEFAG-CAVVISHDRWFL------DRIATHILAFEG 515 (552)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCHHHH------HHhCCEEEEEEC
Confidence 787778888887877654 677779988765 367999998875
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.62 E-value=1.5e-16 Score=136.61 Aligned_cols=180 Identities=15% Similarity=0.113 Sum_probs=97.5
Q ss_pred HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHH
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKE 146 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~ 146 (286)
.+|+++|+. .+++++ .+.+ |++++|+||||||||||+++|+|+++...+.+....... ....++|.++......
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~-Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPRE-GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCC-CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 356777753 577777 4565 999999999999999999999999873333321000000 0000234433211111
Q ss_pred HHHHHh------hccchhhh---heecccccCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263 147 EFLQMV------DKNELLEY---ALVYGDYKGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVF 207 (286)
Q Consensus 147 ~~~~~i------~~~~~~~~---~~~~~~~~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~ 207 (286)
..+..+ +....... ..+..+..... .+.+.+.+ ......+.+|++|++.++++++.+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 111000 00000000 00000000000 11122221 2223346678999999999999888877
Q ss_pred EE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 208 VF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 208 Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
++ ||+.+...+.+.+.+. .+.+...++|++... ...||+|+++++
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~------~~~ad~i~~l~~ 214 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL------DYLSDYIHCLYG 214 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEECC
Confidence 77 6665555555555442 234667778988774 357999999974
No 348
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.62 E-value=5.4e-17 Score=154.39 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=109.6
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee--e
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF--F 142 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~--~ 142 (286)
++++||++.|+ . .|+++++.+.+ |++++|+|+||||||||+++|+|++.+..+.+..... ...|.+...... .
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~-Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-IKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCCCCC
Confidence 67889999997 4 79999999998 9999999999999999999999998633333321100 000101100000 0
Q ss_pred eCHHH-HHHHhhc--c---chh---hhh-eeccc----------------ccCc--cHHHHHHHH--------hcCCcEE
Q 043263 143 VSKEE-FLQMVDK--N---ELL---EYA-LVYGD----------------YKGI--PKKQIREYM--------AKGYDIV 186 (286)
Q Consensus 143 ~~~~~-~~~~i~~--~---~~~---~~~-~~~~~----------------~~~~--~~~~i~~~~--------~~g~~~v 186 (286)
.+..+ +...+.. . .+. +.. ..... ..+. ....+.+.+ ......+
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L 162 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL 162 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence 11110 0000000 0 000 000 00000 0000 001111121 1223457
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+..+ +...++|+++.. ...||+|+++++|+
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~-tvIiisHd~~~~------~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG-TVVAVTHDRYFL------DNVAGWILELDRGR 235 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcCeEEEEECCE
Confidence 78999999999999988888888 777777777777776543 777889988875 36789999988886
Q ss_pred H
Q 043263 261 L 261 (286)
Q Consensus 261 i 261 (286)
+
T Consensus 236 i 236 (552)
T TIGR03719 236 G 236 (552)
T ss_pred E
Confidence 4
No 349
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.62 E-value=1.9e-17 Score=156.49 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=112.0
Q ss_pred HHHhHhHHHHhc-------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC-
Q 043263 67 IELLRSLEASLG-------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN- 136 (286)
Q Consensus 67 ~i~~~~v~~~~~-------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~- 136 (286)
.++++||++.|+ .+++++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~~ 345 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKE-GEIFGIVGTSGAGKTTLSKIIAGVLE------------PTSGEVNVRV 345 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEEec
Confidence 588999999994 168999999998 99999999999999999999999986 44454 22
Q ss_pred Ccce---eeeCH---HHHHHHh----hccchhhhheeccccc-----Ccc----HHHHHHHH--------------hcCC
Q 043263 137 GKDY---FFVSK---EEFLQMV----DKNELLEYALVYGDYK-----GIP----KKQIREYM--------------AKGY 183 (286)
Q Consensus 137 g~~~---~~~~~---~~~~~~i----~~~~~~~~~~~~~~~~-----~~~----~~~i~~~~--------------~~g~ 183 (286)
|.+. ...+. ..++..+ +...+..+..+..++. ... .+.+.+++ ....
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 346 GDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred CCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 3211 11110 0111111 1111111111111100 011 11122221 1223
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
..+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+
T Consensus 426 ~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~------~~~~d~i~ 499 (520)
T TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV------LDVCDRAA 499 (520)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH------HHhCCEEE
Confidence 45678899999999999988888887 7777777777766542 234677889988875 36799999
Q ss_pred ECCCCCH
Q 043263 255 VNAEGKL 261 (286)
Q Consensus 255 v~~~G~i 261 (286)
++++|++
T Consensus 500 ~l~~G~i 506 (520)
T TIGR03269 500 LMRDGKI 506 (520)
T ss_pred EEECCEE
Confidence 9988865
No 350
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.4e-16 Score=148.35 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=111.1
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.+.++|+++. ..++++++.+.+ |++++|+||||||||||+++|+|+++ |.+|+ ++|+++....
T Consensus 257 ~l~~~~~~~~--~~l~~isl~i~~-Ge~~~iiG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~g~~~~~~~ 321 (501)
T PRK11288 257 RLRLDGLKGP--GLREPISFSVRA-GEIVGLFGLVGAGRSELMKLLYGATR------------RTAGQVYLDGKPIDIRS 321 (501)
T ss_pred EEEEeccccC--CcccceeEEEeC-CcEEEEEcCCCCCHHHHHHHHcCCCc------------CCCceEEECCEECCCCC
Confidence 3567777643 478999999998 99999999999999999999999986 55555 4554432211
Q ss_pred HHH-HHH---Hhhcc----------chhhhheeccccc----C---cc---HHHHHHHHh----------cCCcEEEEeC
Q 043263 145 KEE-FLQ---MVDKN----------ELLEYALVYGDYK----G---IP---KKQIREYMA----------KGYDIVLRVD 190 (286)
Q Consensus 145 ~~~-~~~---~i~~~----------~~~~~~~~~~~~~----~---~~---~~~i~~~~~----------~g~~~v~~~~ 190 (286)
... .+. .+.+. ...++.......+ + .. .+.+.+.+. .....+++|+
T Consensus 322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 401 (501)
T PRK11288 322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN 401 (501)
T ss_pred HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence 111 111 01111 1122211100000 0 00 112222221 1224567899
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~------~~~~d~i~~l~~g~i 474 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV------LGVADRIVVMREGRI 474 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HhhCCEEEEEECCEE
Confidence 9999999999988888888 7777777776665432 234777889988875 478999999988864
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.61 E-value=1.2e-16 Score=152.11 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=107.8
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
.++++|+++.|+. .|+++++.+.+ |++++|+||||||||||+++|+|++....+.+.. + ..+.++.+
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~-Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~----------~-~~i~y~~Q 407 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYE-GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP----------E-LKISYKPQ 407 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE----------e-eeEEEecc
Confidence 4789999999976 57888888887 9999999999999999999999998633332221 1 11111111
Q ss_pred HHHHHHhhccchhhhheecccccCcc--HHH------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------Ee
Q 043263 146 EEFLQMVDKNELLEYALVYGDYKGIP--KKQ------IREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LA 211 (286)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~------i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld 211 (286)
.. .........++.......+... ... +..........+++|++||+++|++++.+|+++|+ ||
T Consensus 408 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 408 YI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred cc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 10 0000001111110000000000 000 11123445567889999999999999988877777 66
Q ss_pred cCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 212 AESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 212 ~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+.+...+.+.|.+. .+.+...++|++... ...||+|+++++
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~------~~~aDrvivl~~ 529 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMI------DYISDRLMVFEG 529 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEcC
Confidence 66666666666543 244778889988875 367999999974
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=6.5e-17 Score=156.80 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=112.5
Q ss_pred HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceee
Q 043263 67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~ 142 (286)
.++++||++.|+. .|.++++.+.+ |++++|+||||||||||+++|+|++.+..+.+.. ++. .+.+
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~-Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~----------~~~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDL-DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR----------SAKVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEE----------CCceeEEE
Confidence 5789999999953 68999999998 9999999999999999999999998633333221 111 1111
Q ss_pred eCHHHHHHH-hhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263 143 VSKEEFLQM-VDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-- 209 (286)
Q Consensus 143 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-- 209 (286)
+.+..+... +...........+ .+...+.+... .......+++|++||+.+|++++.+|+++|+
T Consensus 577 v~Q~~~~~l~~~~~~~~~~~~~~---~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 577 FSQHHVDGLDLSSNPLLYMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred EeccccccCCcchhHHHHHHHhc---CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111100000 0000000000000 01112222222 2233456778999999999999988888888
Q ss_pred ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+.+.+.+.|.+..+ +...++|++... ...||+++++++|.+
T Consensus 654 PT~~LD~~s~~~l~~~L~~~~g-tvIivSHd~~~i------~~~~drv~~l~~G~i 702 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLFQG-GVLMVSHDEHLI------SGSVDELWVVSEGKV 702 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 777777777777766544 777789988775 367999999988875
No 353
>PLN03211 ABC transporter G-25; Provisional
Probab=99.61 E-value=5.8e-17 Score=156.18 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=114.3
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc--ceeeeeecccCCCCCCcCCccee---
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS--LHFVVTATSRPMRPGEVNGKDYF--- 141 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~--~~~~i~~~~r~~~~G~~~g~~~~--- 141 (286)
.++|+++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|.... ..+.+. ++|.++.
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~-Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~----------inG~~~~~~~ 138 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASP-GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTIL----------ANNRKPTKQI 138 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEE----------ECCEECchhh
Confidence 46678888875 89999999998 999999999999999999999998752 123322 4454321
Q ss_pred -----eeCHHHHHHHhhccchhhhheeccccc---CccHH----HHHHHHh-----c---------CCcEEEEeCHHHHH
Q 043263 142 -----FVSKEEFLQMVDKNELLEYALVYGDYK---GIPKK----QIREYMA-----K---------GYDIVLRVDIQGAR 195 (286)
Q Consensus 142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~----~i~~~~~-----~---------g~~~v~~~~~q~v~ 195 (286)
++.++. .........++..+..... ....+ .+++.++ . ....+++|++||+.
T Consensus 139 ~~~i~yv~Q~~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ 216 (659)
T PLN03211 139 LKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216 (659)
T ss_pred ccceEEECccc--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH
Confidence 111000 0000111122221111110 11111 1222221 1 11247789999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH--HHH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD--SAV 265 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~--~~~ 265 (286)
+|++++.+|+++++ ||+.+...+.+.|++. .+.|...+.|+++... ...+|+|+++++|++. ...
T Consensus 217 ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i-----~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV-----YQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH-----HHhhceEEEecCCcEEEECCH
Confidence 99999988888777 7776677777766643 2447777788876311 3679999999988652 233
Q ss_pred HHHHHHHHH
Q 043263 266 KLVESVIDA 274 (286)
Q Consensus 266 ~~l~~~i~~ 274 (286)
+++...++.
T Consensus 292 ~~~~~~f~~ 300 (659)
T PLN03211 292 SDAMAYFES 300 (659)
T ss_pred HHHHHHHHH
Confidence 444444443
No 354
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.1e-16 Score=125.61 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=109.3
Q ss_pred HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++||+.+..+ +|.++++.+.+ |++.+|+||||||||||++.|+|+-. | .++.|+ ++|+|+..
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~-GEvhaiMGPNGsGKSTLa~~i~G~p~-Y---------~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKE-GEVHAIMGPNGSGKSTLAYTIMGHPK-Y---------EVTEGEILFDGEDILE 72 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcC-CcEEEEECCCCCCHHHHHHHHhCCCC-c---------eEecceEEECCccccc
Confidence 345566655552 79999999998 99999999999999999999999732 1 145676 78999988
Q ss_pred eCHHHHHHH-----hhccc------hhhhheecccc-cC------ccHHHHHHH----------HhcCC-cEEEEeCHHH
Q 043263 143 VSKEEFLQM-----VDKNE------LLEYALVYGDY-KG------IPKKQIREY----------MAKGY-DIVLRVDIQG 193 (286)
Q Consensus 143 ~~~~~~~~~-----i~~~~------~~~~~~~~~~~-~~------~~~~~i~~~----------~~~g~-~~v~~~~~q~ 193 (286)
++.++.... ++.+. ..+......+. ++ ...+.+++. +.+.. .-+++|++.|
T Consensus 73 l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 887764442 11110 01111111010 00 001122222 22221 3466899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
..++..++-+|.+.|| ||.++.+.+.+-+.... +.+...|+|.-.-. . .-..|+|.++-+|+|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll----~-~i~pD~vhvl~~GrI 223 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL----D-YIKPDKVHVLYDGRI 223 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH----h-hcCCCEEEEEECCEE
Confidence 9999988889999999 66665666655554422 22556777744331 1 123577777766654
No 355
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.59 E-value=2.1e-16 Score=148.47 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=111.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcce---
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDY--- 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~--- 140 (286)
.++++|+++.|+. +++++++.+.+ |++++|+||||||||||+++|+|+.+. ..+.+. ++|.++
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~----------~~g~~~~~~ 328 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNP-GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT----------LFGRRRGSG 328 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE----------EecccCCCC
Confidence 4889999999975 79999999998 999999999999999999999997642 122222 333321
Q ss_pred ----------eeeCHHHHHHHhhccchhhhheecc-----cccC-cc---HHHHHHHH----------hcCCcEEEEeCH
Q 043263 141 ----------FFVSKEEFLQMVDKNELLEYALVYG-----DYKG-IP---KKQIREYM----------AKGYDIVLRVDI 191 (286)
Q Consensus 141 ----------~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~-~~---~~~i~~~~----------~~g~~~v~~~~~ 191 (286)
.++.++. ..........++....+ ..+. .. .+.+.+.+ ......+++|++
T Consensus 329 ~~~~~~~~~i~~v~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSL-HLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ 407 (490)
T ss_pred CCHHHHHhhceEECHHH-HhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHH
Confidence 1111110 00000000011111100 0010 11 11222222 122245667899
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVK-NFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i 261 (286)
|++.+|++++.+|+++|+ ||+.+...+.+.|.+. +..+...++|+++.. .. .||+++++++|++
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~------~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA------PACITHRLEFVPDGDI 481 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh------hhhhheeEEEecCCce
Confidence 999999999988888888 7777777777766653 222467779988774 23 4899999999976
Q ss_pred H
Q 043263 262 D 262 (286)
Q Consensus 262 ~ 262 (286)
.
T Consensus 482 ~ 482 (490)
T PRK10938 482 Y 482 (490)
T ss_pred E
Confidence 3
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=2.3e-16 Score=152.17 Aligned_cols=185 Identities=12% Similarity=-0.000 Sum_probs=110.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee--e
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF--V 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~--~ 143 (286)
+.++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+..... ...+.+....... .
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~-Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIED-NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-LIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-CEEEEeccCCCCCCCC
Confidence 567899999976 78999999998 9999999999999999999999997643333321100 0000000000000 0
Q ss_pred C-HHHHH----HH------h-------hccchhhhheecc-------cccC-ccHHHHHHHHh-------cCCcEEEEeC
Q 043263 144 S-KEEFL----QM------V-------DKNELLEYALVYG-------DYKG-IPKKQIREYMA-------KGYDIVLRVD 190 (286)
Q Consensus 144 ~-~~~~~----~~------i-------~~~~~~~~~~~~~-------~~~~-~~~~~i~~~~~-------~g~~~v~~~~ 190 (286)
. .+.+. .. . ......++...+. ...+ .....+..++. .....+++|+
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe 161 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW 161 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence 0 00000 00 0 0000000000000 0000 01122333321 1234577899
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++|++++.+|+++|+ ||+.+...+.+.|.+..+ +...++|+.... ...||+|+++++|++
T Consensus 162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~-tvlivsHd~~~l------~~~~d~i~~L~~G~i 231 (635)
T PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG-SIIFISHDRSFI------RNMATRIVDLDRGKL 231 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCHHHH------HHhcCeEEEEECCEE
Confidence 9999999999988888888 787777777777776543 777789988764 367999999988865
No 357
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.59 E-value=2.3e-16 Score=148.43 Aligned_cols=173 Identities=12% Similarity=0.188 Sum_probs=111.7
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.++++|+++ ..++++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++...+
T Consensus 257 ~l~~~~l~~---~~l~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~G~~~------------p~~G~I~~~g~~i~~~~ 320 (501)
T PRK10762 257 RLKVDNLSG---PGVNDVSFTLRK-GEILGVSGLMGAGRTELMKVLYGALP------------RTSGYVTLDGHEVVTRS 320 (501)
T ss_pred EEEEeCccc---CCcccceEEEcC-CcEEEEecCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCCCC
Confidence 367788875 258999999998 99999999999999999999999986 55555 4555442222
Q ss_pred HHH-HHHH---hhcc----------chhhhheec-----ccccC-cc----HHHHHHHHhc----------CCcEEEEeC
Q 043263 145 KEE-FLQM---VDKN----------ELLEYALVY-----GDYKG-IP----KKQIREYMAK----------GYDIVLRVD 190 (286)
Q Consensus 145 ~~~-~~~~---i~~~----------~~~~~~~~~-----~~~~~-~~----~~~i~~~~~~----------g~~~v~~~~ 190 (286)
... .+.. +.+. ...++..+. ...++ .. .+.+.+.+.. ....+++|+
T Consensus 321 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 321 PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 111 1110 1111 111211110 00001 11 1122333221 123566889
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++.+|++++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ...||+|+++++|++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~------~~~~d~v~~l~~G~i 473 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEV------LGMSDRILVMHEGRI 473 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HhhCCEEEEEECCEE
Confidence 9999999999988888888 78877777777766532 34667779988875 468999999998875
No 358
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.59 E-value=5.6e-16 Score=127.62 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=33.6
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+++++++.+.+ |++++|+||||||||||+++|+|++.
T Consensus 7 il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 7 VLKGLNFAAER-GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred eecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57777788887 99999999999999999999999986
No 359
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=8.3e-16 Score=144.94 Aligned_cols=173 Identities=12% Similarity=0.140 Sum_probs=111.4
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.+.++|+++ . .|+++++.+.+ |++++|+||||||||||+++|+|+++ |..|+ ++|.++...+
T Consensus 268 ~l~~~~l~~--~-~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 268 VLTVEDLTG--E-GFRNISLEVRA-GEILGLAGVVGAGRTELAETLYGLRP------------ARGGRIMLNGKEINALS 331 (510)
T ss_pred eEEEeCCCC--C-CccceeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCcEEEECCEECCCCC
Confidence 477888884 2 58999999998 99999999999999999999999976 45554 4454332222
Q ss_pred HHHH-HHH---hhcc----------chhhhheec--cc--cc-Cc--cHHHHHHHHh----------cCCcEEEEeCHHH
Q 043263 145 KEEF-LQM---VDKN----------ELLEYALVY--GD--YK-GI--PKKQIREYMA----------KGYDIVLRVDIQG 193 (286)
Q Consensus 145 ~~~~-~~~---i~~~----------~~~~~~~~~--~~--~~-~~--~~~~i~~~~~----------~g~~~v~~~~~q~ 193 (286)
.... +.. +.+. ...++.... .. .+ .. ..+.+.+++. .....+++|++|+
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 411 (510)
T PRK15439 332 TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK 411 (510)
T ss_pred HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH
Confidence 1111 100 1111 111111100 00 00 00 1112222221 1224577899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i------~~~~d~i~~l~~G~i 481 (510)
T PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI------EQMADRVLVMHQGEI 481 (510)
T ss_pred HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888888 8888787777766543 234777889988875 367999999988865
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.57 E-value=1.3e-15 Score=123.29 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=87.5
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-------ceeeeCHHHHHHHh
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-------DYFFVSKEEFLQMV 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-------~~~~~~~~~~~~~i 152 (286)
+++++++.+.+ |++++|+||||||||||++++... .+.+. ++|. .+.++.+.
T Consensus 10 ~l~~isl~i~~-G~~~~l~G~nG~GKSTLl~~il~~----~G~v~----------~~~~~~~~~~~~~~~~~q~------ 68 (176)
T cd03238 10 NLQNLDVSIPL-NVLVVVTGVSGSGKSTLVNEGLYA----SGKAR----------LISFLPKFSRNKLIFIDQL------ 68 (176)
T ss_pred eecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhc----CCcEE----------ECCcccccccccEEEEhHH------
Confidence 57777888887 999999999999999999998531 11111 1221 11111110
Q ss_pred hccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC--CcEEEE------EecCCHHHHHHHHHH
Q 043263 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD--SAVFVF------LAAESEMALVERLVE 224 (286)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~--~~~~Il------ld~~~~~~l~~rl~~ 224 (286)
.+++. + ++... .+......+.++++|++.++++++.+ |+++|+ ||+.+.+.+.+.+.+
T Consensus 69 ---~~l~~---~----~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 69 ---QFLID---V----GLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred ---HHHHH---c----CCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 01110 0 00000 01222345677899999999999988 777777 666666666666654
Q ss_pred h--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 225 R--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 225 r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
. .+.+...++|++.. ...||+++++++|.
T Consensus 135 ~~~~g~tvIivSH~~~~-------~~~~d~i~~l~~g~ 165 (176)
T cd03238 135 LIDLGNTVILIEHNLDV-------LSSADWIIDFGPGS 165 (176)
T ss_pred HHhCCCEEEEEeCCHHH-------HHhCCEEEEECCCC
Confidence 3 23466777888765 35699999998764
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=8.8e-16 Score=154.32 Aligned_cols=180 Identities=13% Similarity=0.212 Sum_probs=121.4
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
+..++++|.+|+.+. .|+++++.+++ |+.++|+|+.|||||+|+.+|.|.++ ..+|. +.|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~-G~lvaVvG~vGsGKSSLL~AiLGEm~------------~~sG~v~v~g 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKK-GQLVAVVGPVGSGKSSLLSAILGEMP------------KLSGSVAVNG 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecC-CCEEEEECCCCCCHHHHHHHHhcCcc------------cccceEEEcC
Confidence 345777888887653 68999999998 99999999999999999999999986 44444 445
Q ss_pred cceeeeCHHHHHHHhhccchhhhheecccccCccH-HH-H--------HHHHhcCCc--------EEEEeCHHHHHHHHH
Q 043263 138 KDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK-KQ-I--------REYMAKGYD--------IVLRVDIQGARTLRR 199 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~-i--------~~~~~~g~~--------~v~~~~~q~v~iara 199 (286)
. +.+.+++.+ +.++.+ .+++.+|..|...+ +. + -+.++.|.. .+.|||+||+.+|||
T Consensus 583 s-iaYv~Q~pW---I~ngTv-reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 583 S-VAYVPQQPW---IQNGTV-RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred e-EEEeccccH---hhCCcH-HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 4 444444332 122222 33344554332110 00 1 122344444 455789999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH--HHHHHH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS--AVKLVE 269 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~--~~~~l~ 269 (286)
++.+.++++| +|+..-..+.++... ..+.|.+.++|.+.. +..||.|+++++|++.+ .++++.
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~-------L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF-------LPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh-------hhhCCEEEEecCCeEecccCHHHHH
Confidence 9999999999 666655566665443 133477888997776 68999999999998733 355554
No 362
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.57 E-value=2e-15 Score=127.47 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-------eeCHHHHHHHhhccchh
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-------FVSKEEFLQMVDKNELL 158 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-------~~~~~~~~~~i~~~~~~ 158 (286)
+.+ |++++|+|+||||||||+++|+|+++ |..|+ ++|.++. ++.+...-.........
T Consensus 3 i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 69 (223)
T TIGR03771 3 ADK-GELLGLLGPNGAGKTTLLRAILGLIP------------PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVA 69 (223)
T ss_pred cCC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCccchHhhCcEEEecccccccCCCCccHH
Confidence 444 99999999999999999999999986 55555 5554421 11110000000000011
Q ss_pred hhheec-----ccccC---ccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263 159 EYALVY-----GDYKG---IPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE 215 (286)
Q Consensus 159 ~~~~~~-----~~~~~---~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~ 215 (286)
++.... +.... ...+.+.++++ .....+.+|++|++.++++++.+|+++|+ ||+.+.
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 70 HTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred HHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 111000 00000 01112232222 22234567889999999999999988888 888777
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 216 MALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 216 ~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+.+.+.|.+. .+.+...++|+++.. ...||+++++ +|++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l-~G~i 190 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQA------MATCDRVVLL-NGRV 190 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEE-CCEE
Confidence 7777777643 234677778988864 3679999988 5765
No 363
>PRK13409 putative ATPase RIL; Provisional
Probab=99.57 E-value=8e-16 Score=146.59 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=102.0
Q ss_pred HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-----------
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN----------- 136 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~----------- 136 (286)
+++++.|+. .|++++ .+.+ |+++||+|||||||||++++|+|++. |+.|++.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~-Gev~gLvG~NGaGKSTLlkiL~G~l~------------p~~G~i~~~~~~~~~~~~ 142 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKE-GKVTGILGPNGIGKTTAVKILSGELI------------PNLGDYEEEPSWDEVLKR 142 (590)
T ss_pred cCceEEecCCceeEecCC-cCCC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCccccCCCcHHHHHHH
Confidence 348889975 588888 6666 99999999999999999999999986 6666643
Q ss_pred --CcceeeeCHHHHHHH-h-----hcc-chhhh---heecccccCcc-HHHHHHH---------HhcCCcEEEEeCHHHH
Q 043263 137 --GKDYFFVSKEEFLQM-V-----DKN-ELLEY---ALVYGDYKGIP-KKQIREY---------MAKGYDIVLRVDIQGA 194 (286)
Q Consensus 137 --g~~~~~~~~~~~~~~-i-----~~~-~~~~~---~~~~~~~~~~~-~~~i~~~---------~~~g~~~v~~~~~q~v 194 (286)
|.++.... ..+... + .+. ..... ..+..++.... .+.+.+. +......+++|++|++
T Consensus 143 ~~G~~l~~~~-~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 143 FRGTELQNYF-KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred hCChHHHHHH-HHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 33221000 000000 0 000 00000 00001110000 1112222 2233345677899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
++|++++.+|+++|| ||+.....+.+.|.+.. +.+...++|+++.. ...||+|+++.+
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l------~~~~D~v~vl~~ 286 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVL------DYLADNVHIAYG 286 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence 999999988887777 66665666666555431 44677889998875 367999999875
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.56 E-value=7e-16 Score=160.50 Aligned_cols=170 Identities=12% Similarity=0.196 Sum_probs=110.7
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
.+.++++++.+...|+++++.+++ |++++|+||||||||||+++|+|+++ |..|+ ++|. +.++.
T Consensus 428 ~~~~~~~s~~~~~~l~~i~l~i~~-G~~~~I~G~~GsGKSTLl~~l~G~~~------------~~~G~i~~~g~-iayv~ 493 (1490)
T TIGR01271 428 GLFFSNFSLYVTPVLKNISFKLEK-GQLLAVAGSTGSGKSSLLMMIMGELE------------PSEGKIKHSGR-ISFSP 493 (1490)
T ss_pred cccccccccccCcceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE-EEEEe
Confidence 356677776554479999999998 99999999999999999999999987 55565 3442 22222
Q ss_pred HHHHHHHhhccchhhhheecccccCc-c-HH-----HHHH---HHhcCC--------cEEEEeCHHHHHHHHHHhCCCcE
Q 043263 145 KEEFLQMVDKNELLEYALVYGDYKGI-P-KK-----QIRE---YMAKGY--------DIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~-----~i~~---~~~~g~--------~~v~~~~~q~v~iaral~~~~~~ 206 (286)
++.+ +..+...+|.. ++..+.. . .+ .+.+ .++.|. ..+.+|++||+++||+++.+|++
T Consensus 494 Q~~~---l~~~Ti~eNI~-~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i 569 (1490)
T TIGR01271 494 QTSW---IMPGTIKDNII-FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL 569 (1490)
T ss_pred CCCc---cCCccHHHHHH-hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 2110 01112222222 2111100 0 00 0111 122232 35667899999999999999998
Q ss_pred EEE------EecCCHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 207 FVF------LAAESEMALVERL-VER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl-~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|| ||+.+...+.+.+ ... .+.|...++|++.. ...||+|+++++|++
T Consensus 570 llLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~-------~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 570 YLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH-------LKKADKILLLHEGVC 625 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHH-------HHhCCEEEEEECCEE
Confidence 888 7777777777653 332 34477888998877 356999999988754
No 365
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.1e-15 Score=133.81 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=119.9
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
-..++++||.|.|.. -+-.+|+.+.. |++|.|+|.|||||||++++|.|++. |++|+ +||.+
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikr-GelvFliG~NGsGKST~~~LLtGL~~------------PqsG~I~ldg~p 386 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKR-GELVFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKP 386 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEec-CcEEEEECCCCCcHHHHHHHHhcccC------------CCCCceeECCcc
Confidence 346999999999986 24566788886 99999999999999999999999997 99999 89999
Q ss_pred eeeeCHHHHHHHhh---ccchhhhheecccccCccHHHHHHHH-----------hcCCc---EEEEeCHHHHHHHHHHhC
Q 043263 140 YFFVSKEEFLQMVD---KNELLEYALVYGDYKGIPKKQIREYM-----------AKGYD---IVLRVDIQGARTLRRILG 202 (286)
Q Consensus 140 ~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~g~~---~v~~~~~q~v~iaral~~ 202 (286)
+...+.++++.++. .+..+......+.- ..+.+.+..++ ..|.. .++-||+.|++++-+++.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll~~e~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 98888888887652 11111111111111 02333333331 22221 244589999999999998
Q ss_pred CCcEEEE----EecCCH--H----HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263 203 DSAVFVF----LAAESE--M----ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 203 ~~~~~Il----ld~~~~--~----~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~ 264 (286)
+.++++| -|-++. . .+.-++++.+ .|+..|+|+=.- ...||+++.+.+|++.|.
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG-KTI~aIsHDd~Y-------F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG-KTIFAISHDDHY-------FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC-CeEEEEecCchh-------hhhHHHHHHHhcCceeec
Confidence 9999998 232221 1 2223444544 488888774222 567899998888876543
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=1.6e-16 Score=126.85 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=114.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC-ccee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG-KDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g-~~~~ 141 (286)
.+.++||+.+|++ ++.++++.+.+ |+.-+|+||||+||||++..|.|.-. |+.|+ ++| .|+.
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~-Gelr~lIGpNGAGKTT~mD~ItGKtr------------p~~G~v~f~g~~dl~ 71 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDP-GELRVLIGPNGAGKTTLMDVITGKTR------------PQEGEVLFDGDTDLT 71 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecC-CeEEEEECCCCCCceeeeeeecccCC------------CCcceEEEcCchhhc
Confidence 3567889999998 89999999998 99999999999999999999999875 77777 555 5666
Q ss_pred eeCHHHHHHH-----hhccchhhhheeccccc------------------CccHHHHHHHHh---------cCCcEEEEe
Q 043263 142 FVSKEEFLQM-----VDKNELLEYALVYGDYK------------------GIPKKQIREYMA---------KGYDIVLRV 189 (286)
Q Consensus 142 ~~~~~~~~~~-----i~~~~~~~~~~~~~~~~------------------~~~~~~i~~~~~---------~g~~~v~~~ 189 (286)
..+...+..+ ++....+++..++.|+. ....+.+++.+. .-...++.|
T Consensus 72 ~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG 151 (249)
T COG4674 72 KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG 151 (249)
T ss_pred cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence 5555444332 23344444433333310 111223443321 112456789
Q ss_pred CHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 190 DIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|++.|.--+..+|.+ ++||.|. .+..-+-|... +..+..++.|++... ...|++|-|++.|++
T Consensus 152 qKQwLEIGMll~Q~P~l-LLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fv------r~~A~~VTVlh~G~V 224 (249)
T COG4674 152 QKQWLEIGMLLAQDPKL-LLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV------REIADKVTVLHEGSV 224 (249)
T ss_pred hhhhhhhheeeccCCcE-EEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHH------HHhhheeEEEeccce
Confidence 99999999877755555 5555543 11222233332 234777888988875 367899999888764
No 367
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.55 E-value=5.3e-14 Score=117.37 Aligned_cols=178 Identities=24% Similarity=0.319 Sum_probs=103.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee--------eeCHHHHHHHhhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF--------FVSKEEFLQMVDK 154 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~--------~~~~~~~~~~i~~ 154 (286)
..+|||+|++||||||++++|.++ +...++.....+.. ..|. .+|.++. .+++..++..+.+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~~-g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~ 83 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAEM-GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFS 83 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhC
Confidence 478999999999999999999974 21111111000000 0110 2333332 1344444444322
Q ss_pred c-chhh--hheecccccCccHHHHHHHHhcCCc-EEEEeCHHHHHHHHHH-hCCCcEEEEEecCCHHHHHHHHHHhcCCC
Q 043263 155 N-ELLE--YALVYGDYKGIPKKQIREYMAKGYD-IVLRVDIQGARTLRRI-LGDSAVFVFLAAESEMALVERLVERKTEN 229 (286)
Q Consensus 155 ~-~~~~--~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~~q~v~iaral-~~~~~~~Illd~~~~~~l~~rl~~r~~~t 229 (286)
+ .... +...++..+..-.+.+......+.. +++++.. +..+. ....+.+++++++ .+.+.+|+.+|++.+
T Consensus 84 ~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pL----L~e~~~~~~~d~ii~V~a~-~e~~~~Rl~~R~~~s 158 (208)
T PRK14731 84 DPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAI----LFESGGDAGLDFIVVVAAD-TELRLERAVQRGMGS 158 (208)
T ss_pred CHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeee----eeecCchhcCCeEEEEECC-HHHHHHHHHHcCCCC
Confidence 2 1111 1122222221112233333334433 4444432 11111 1233677778776 888999999998878
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.+.+..|++.+..+.++...+|.+|.| +|+++++..++.++++.+.
T Consensus 159 ~e~~~~Ri~~q~~~~~~~~~ad~vI~N-~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 159 REEIRRRIAAQWPQEKLIERADYVIYN-NGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHHHHHHHHcCChHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHHHH
Confidence 899999999888777767789998865 4899999999999987764
No 368
>PLN03073 ABC transporter F family; Provisional
Probab=99.54 E-value=7.6e-16 Score=149.44 Aligned_cols=184 Identities=14% Similarity=0.051 Sum_probs=110.6
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcc
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~ 139 (286)
...|.++|++++|+. .|+++++.+.+ |+++||+|+||||||||+++|+|... +..+.+.+... +..|.+
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~-Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q-----~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAF-GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ-----EVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec-----cCCCCC
Confidence 345899999999976 79999999998 99999999999999999999998531 11122221110 011222
Q ss_pred eeee------CHHH---HHH---Hhhcc-chhhh----heecccccCccHH-----------------------HHHHH-
Q 043263 140 YFFV------SKEE---FLQ---MVDKN-ELLEY----ALVYGDYKGIPKK-----------------------QIREY- 178 (286)
Q Consensus 140 ~~~~------~~~~---~~~---~i~~~-~~~~~----~~~~~~~~~~~~~-----------------------~i~~~- 178 (286)
.... .... +.. ...+. ..... ........+...+ .+...
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 1100 0000 000 01110 00000 0000000011110 11111
Q ss_pred ---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 043263 179 ---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREE 243 (286)
Q Consensus 179 ---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~ 243 (286)
.......+++|++|++++|++++.+|+++|| ||+.+...+.+.|.+.+ .+...++|+....
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-~tviivsHd~~~l--- 404 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP-KTFIVVSHAREFL--- 404 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHH---
Confidence 1223356778999999999999988888887 77776777777777664 3777889987764
Q ss_pred hhccCCCcEEEECCCCCH
Q 043263 244 VQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 244 ~~~~~~~d~viv~~~G~i 261 (286)
...||+|+++++|++
T Consensus 405 ---~~~~d~i~~l~~g~i 419 (718)
T PLN03073 405 ---NTVVTDILHLHGQKL 419 (718)
T ss_pred ---HHhCCEEEEEECCEE
Confidence 357999999988865
No 369
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=6.7e-14 Score=115.58 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=107.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC-------cCCccee---eeCHHHHHHHhhccch-hh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE-------VNGKDYF---FVSKEEFLQMVDKNEL-LE 159 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~-------~~g~~~~---~~~~~~~~~~i~~~~~-~~ 159 (286)
+.+|||+|+.||||||++++|...++...++.....+.. ..+. .+|.++. .+++..++..+..+.- ..
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~ 85 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKK 85 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHH
Confidence 468999999999999999999865432222211111100 0010 2333331 2455555555422211 11
Q ss_pred --hheecccccCccHHHHHHHHhcC--CcEEEEeCHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 160 --YALVYGDYKGIPKKQIREYMAKG--YDIVLRVDIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 160 --~~~~~~~~~~~~~~~i~~~~~~g--~~~v~~~~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
+...++. ..+.+.+.+... ..++++..+ + ..+. ....+.+++++++ .+..++|+.+|++.+.+.
T Consensus 86 ~Le~i~HP~----V~~~~~~~~~~~~~~~vv~eipL--L--~E~~~~~~~~~D~vi~V~a~-~e~ri~Rl~~Rd~~s~~~ 156 (204)
T PRK14733 86 WLEDYLHPV----INKEIKKQVKESDTVMTIVDIPL--L--GPYNFRHYDYLKKVIVIKAD-LETRIRRLMERDGKNRQQ 156 (204)
T ss_pred HHHhhhhHH----HHHHHHHHHHhcCCCeEEEEech--h--hhccCchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence 1122221 222333333322 234555543 1 1221 1123677888886 888889999998889999
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCC-CHHHHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEG-KLDSAVKLVESVIDAEK 276 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G-~i~~~~~~l~~~i~~~~ 276 (286)
+..|++.|+++.++...||.||.|+ | +++++..++.+++++.+
T Consensus 157 a~~ri~~Q~~~eek~~~aD~VI~N~-g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 157 AVAFINLQISDKEREKIADFVIDNT-ELTDQELESKLITTINEIT 200 (204)
T ss_pred HHHHHHhCCCHHHHHHhCCEEEECc-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999888899999999665 8 99999999999988764
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.54 E-value=1.8e-15 Score=132.82 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=122.9
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.+.++|++..|+. +++++++++.+ |++++|+|.||||||-.+..+.++++..... .-+|. ++|.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~-GEtlAlVGESGSGKSvTa~sim~LLp~~~~~-------~~sg~i~f~G~ 77 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEA-GETLALVGESGSGKSVTALSILGLLPSPAAA-------HPSGSILFDGE 77 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecC-CCEEEEEecCCCCccHHHHHHHHhcCCCccc-------CccceeEEcCh
Confidence 4678888888862 68999999998 9999999999999999999999998622111 11333 6777
Q ss_pred ceeeeCHHHHHHHh-------hccch-------------hhhheecccccCccHHHHH----------------HHHhcC
Q 043263 139 DYFFVSKEEFLQMV-------DKNEL-------------LEYALVYGDYKGIPKKQIR----------------EYMAKG 182 (286)
Q Consensus 139 ~~~~~~~~~~~~~i-------~~~~~-------------~~~~~~~~~~~~~~~~~i~----------------~~~~~g 182 (286)
++...+..+++... .|... .|-... .++...+..+ ..+..-
T Consensus 78 dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~---Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 78 DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL---HRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 77666666665532 11111 111111 1222222111 114444
Q ss_pred CcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 183 YDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
..-+++|++||+.||-|+...|+++|- ||..-...+.+-|+ ++-+.....|+|++... .+.||+|
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iV------r~~ADrV 228 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV------RKFADRV 228 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHH------HHhhhhE
Confidence 567889999999999999977777777 55554555555444 44455777889999986 4789999
Q ss_pred EECCCCCHHHH
Q 043263 254 VVNAEGKLDSA 264 (286)
Q Consensus 254 iv~~~G~i~~~ 264 (286)
.|+..|.+.|.
T Consensus 229 ~VM~~G~ivE~ 239 (534)
T COG4172 229 YVMQHGEIVET 239 (534)
T ss_pred EEEeccEEeec
Confidence 99999987554
No 371
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.53 E-value=8.1e-16 Score=136.81 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=90.4
Q ss_pred EEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHH--HHHHhhccc------hhhhheeccc
Q 043263 97 ISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEE--FLQMVDKNE------LLEYALVYGD 166 (286)
Q Consensus 97 l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~--~~~~i~~~~------~~~~~~~~~~ 166 (286)
|+||||||||||+++|+|++. |.+|+ ++|.++....... +....++.. ..++..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 68 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ------------PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLK 68 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHh
Confidence 689999999999999999986 55555 5565443222110 000011111 1222111101
Q ss_pred ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--
Q 043263 167 YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-- 225 (286)
Q Consensus 167 ~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-- 225 (286)
.++... +.+.+++ ......+++|++|++++||+++.+|+++|+ ||+.+...+.+.|.+.
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 69 MRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 111111 1222222 222345678899999999999988888888 7777677776666542
Q ss_pred -cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 226 -KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 226 -~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+.+...++|++... ...||+|+++++|++
T Consensus 149 ~~g~tiiivTHd~~e~------~~~~d~i~vl~~G~i 179 (325)
T TIGR01187 149 QLGITFVFVTHDQEEA------MTMSDRIAIMRKGKI 179 (325)
T ss_pred hcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 244777889988875 478999999998875
No 372
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=113.81 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccchh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNELL 158 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~~ 158 (286)
+.+|+|+|++||||||+++.|.. ++...++.....+. ...|. .+|.++. .+++..++..+..+...
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 45799999999999999999987 44222222221111 11111 2333322 24566666655333221
Q ss_pred -h--hheecccccCccHHHHHHHHhcC---CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 159 -E--YALVYGDYKGIPKKQIREYMAKG---YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 159 -~--~~~~~~~~~~~~~~~i~~~~~~g---~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
. +...++. ..+.+.+.+... ..++++..+-.-.-... ..+.+++++++ .+...+|+.+|++.+.+.
T Consensus 81 ~~~L~~i~hP~----v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~---~~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~ 152 (194)
T PRK00081 81 RKKLEAILHPL----IREEILEQLQEAESSPYVVLDIPLLFENGLEK---LVDRVLVVDAP-PETQLERLMARDGLSEEE 152 (194)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHcccCCEEEEEehHhhcCCchh---hCCeEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence 1 1112211 122333333222 34556655321111122 33688888887 888889999998889999
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
+..|+..+.+..++...+|.||.| +|+++++..++.++++.
T Consensus 153 ~~~ri~~Q~~~~~~~~~ad~vI~N-~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 153 AEAIIASQMPREEKLARADDVIDN-NGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHHHHHhCCHHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHh
Confidence 999999887777767889988865 48999999999988754
No 373
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.52 E-value=2.1e-13 Score=115.65 Aligned_cols=184 Identities=18% Similarity=0.120 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCcce----eeeCHHHHHHHhhccch-h
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDY----FFVSKEEFLQMVDKNEL-L 158 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~----~~~~~~~~~~~i~~~~~-~ 158 (286)
.+|||+|+.||||||++++|...++...++.....+. ...|. .+|..+ ..+++..++..+..+.- .
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5899999999999999999987543222221111111 11111 123222 12566666665432211 1
Q ss_pred --hhheecccccCccHHHHHH--------HH-hcCC-cEEEEeCHHHHHHHHHH-hC-CCcEEEEEecCCHHHHHHHHHH
Q 043263 159 --EYALVYGDYKGIPKKQIRE--------YM-AKGY-DIVLRVDIQGARTLRRI-LG-DSAVFVFLAAESEMALVERLVE 224 (286)
Q Consensus 159 --~~~~~~~~~~~~~~~~i~~--------~~-~~g~-~~v~~~~~q~v~iaral-~~-~~~~~Illd~~~~~~l~~rl~~ 224 (286)
-+...++..+....+.+.+ .+ ..+. .++++...- ..+- .. ..+.+++++++ .+...+||.+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL----~E~~~~~~~~D~iv~V~a~-~e~ri~RL~~ 156 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTL----FETKTFTYFVSASVVVSCS-EERQIERLRK 156 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechh----hccCchhhcCCeEEEEECC-HHHHHHHHHH
Confidence 1112222211111111211 01 1222 455565431 1221 11 23677778876 8888899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-CCHHHHHHHHHHHHHHHHhcccc
Q 043263 225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAE-GKLDSAVKLVESVIDAEKAKVRQ 281 (286)
Q Consensus 225 r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~~~~~~~~ 281 (286)
|++.+.+.+..|+..|....++...||.||.|+. |+++++..++.++++.++.+++.
T Consensus 157 R~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~~~~~ 214 (244)
T PTZ00451 157 RNGFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSRQSNK 214 (244)
T ss_pred cCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 9888999999999998888887889999986542 79999999999999888766553
No 374
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.52 E-value=8.6e-14 Score=114.77 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-h-
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-L- 158 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~- 158 (286)
++||+|++||||||++++|.+. +....+.....+.. ..|. .+|.++. .+++..++..+..+.- .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999874 32222222211111 1111 2333332 2455555555422211 1
Q ss_pred -hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263 159 -EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI 237 (286)
Q Consensus 159 -~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl 237 (286)
-+...++..+....+.+.. ..++..++++...-.- . .+....+.+++++++ .+...+|+.+|++.+.+.+..|+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~-~~~~~~vi~e~pLL~E--~-~~~~~~D~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri 154 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT-TAEGKLVIWEVPLLFE--T-DAYTLCDATVTVDSD-PEESILRTISRDGMKKEDVLARI 154 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH-HhcCCcEEEEeeeeeE--c-CchhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1112222221111111111 2233445555432110 0 011123788889987 77888999999888999999999
Q ss_pred HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
..+....++...||.||.|+ |+++++..++.++++...++
T Consensus 155 ~~Q~~~~~k~~~aD~vI~N~-~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 155 ASQLPITEKLKRADYIVRND-GNREGLKEECKILYSTLLKK 194 (196)
T ss_pred HHcCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHHHHh
Confidence 98887777788999988655 79999999999998877654
No 375
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=2e-13 Score=112.67 Aligned_cols=172 Identities=18% Similarity=0.200 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee-----eeCHHHHHHHhhccch-
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF-----FVSKEEFLQMVDKNEL- 157 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~-----~~~~~~~~~~i~~~~~- 157 (286)
.+|+|+|++||||||+++.|...++...++.....+.. ..|. .+|.++. .+++..+...+..+.-
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999987543333222211111 1111 1232221 2344444444322111
Q ss_pred hh--hheecccccCccHHHHHHHHhc---CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 158 LE--YALVYGDYKGIPKKQIREYMAK---GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~i~~~~~~---g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
.. +...++. ..+.+.+.+.. ...++++...-.-. .+....+.+++++++ .+...+|+.+|++.+.+.
T Consensus 82 ~~~l~~i~hP~----i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~~~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~ 153 (195)
T PRK14730 82 RRWLENLIHPY----VRERFEEELAQLKSNPIVVLVIPLLFEA---KLTDLCSEIWVVDCS-PEQQLQRLIKRDGLTEEE 153 (195)
T ss_pred HHHHHHHHhHH----HHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHhCCCEEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence 00 1112211 12223322222 23444444321111 122234678889987 888889999998789999
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
+.+|++.+.+..++...+|.||.| +|+++++.+++.+++.
T Consensus 154 ~~~ri~~Q~~~~~k~~~aD~vI~N-~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 154 AEARINAQWPLEEKVKLADVVLDN-SGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHHHHHhCCCHHHHHhhCCEEEEC-CCCHHHHHHHHHHHHh
Confidence 999999887666666789998854 5899999999988764
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.49 E-value=3.8e-15 Score=139.04 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=107.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
|.++|+++.|+. .|.++++.+.+ |..|||+|+||||||||+++|+|......+.+....- .+.|.+..........
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~-G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNP-GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-LRVGYLSQEPPLDPEK 81 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCC-CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-ceEEEeCCCCCcCCCc
Confidence 567899999976 78999999998 9999999999999999999999988643333331100 0001110000000000
Q ss_pred HHHHHHhhcc----------chhhh-------------heecccc--cCccHHHHHHHHh--------cCCcEEEEeCHH
Q 043263 146 EEFLQMVDKN----------ELLEY-------------ALVYGDY--KGIPKKQIREYMA--------KGYDIVLRVDIQ 192 (286)
Q Consensus 146 ~~~~~~i~~~----------~~~~~-------------~~~~~~~--~~~~~~~i~~~~~--------~g~~~v~~~~~q 192 (286)
..+...+... .-... ...+... |.. ...+..++. .....+++|++.
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTL-EARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccch-HHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 0000000000 00000 0000000 111 111222221 122456789999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|+++|++++.+|+++++ ||.++...+.+-|....+ +...|+|+-... -..|++|+.++.|.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FL------d~V~t~I~~ld~g~ 227 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFL------DNVATHILELDRGK 227 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHH------HHHhhheEEecCCc
Confidence 99999999988887777 777777788788887766 888888865542 14577777777664
No 377
>PLN02422 dephospho-CoA kinase
Probab=99.49 E-value=3.4e-13 Score=113.27 Aligned_cols=178 Identities=19% Similarity=0.179 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-h
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-L 158 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~ 158 (286)
.+|||+|++||||||++++|.. ++...++.....+.. ..|. .+|.++. .+++..++..+..+.- .
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999985 332222222211110 1110 2333331 2445555555422211 1
Q ss_pred h--hheecccccCccHHHHHHHHhcC-CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263 159 E--YALVYGDYKGIPKKQIREYMAKG-YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLV 235 (286)
Q Consensus 159 ~--~~~~~~~~~~~~~~~i~~~~~~g-~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~ 235 (286)
. +...++..+......+.+....+ ..++++..+ +..+ .+....+.+|+++++ .+...+|+.+|++.+.+.+..
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipL--L~E~-~~~~~~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~ 156 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPL--LFET-KMDKWTKPVVVVWVD-PETQLERLMARDGLSEEQARN 156 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehh--hhhc-chhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 1 11222222111111111111122 345555543 1111 122234778889986 888889999998889999999
Q ss_pred HHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 236 RIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 236 rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
|++.+.+..++...||.||.|+ |+++++..++.++++...
T Consensus 157 Ri~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 157 RINAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence 9999887777778899888655 899999999999988753
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.48 E-value=3.3e-15 Score=116.29 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=68.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hcc
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKN 155 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~ 155 (286)
|+++++.+++ |++++|+|+||||||||+++|+|.+. |..|. ++|.++...+...++..+ .+.
T Consensus 1 L~~v~~~i~~-g~~~~i~G~nGsGKStLl~~l~g~~~------------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (137)
T PF00005_consen 1 LKNVSLEIKP-GEIVAIVGPNGSGKSTLLKALAGLLP------------PDSGSILINGKDISDIDIEELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEEEET-TSEEEEEESTTSSHHHHHHHHTTSSH------------ESEEEEEETTEEGTTSHHHHHHHTEEEEESS
T ss_pred CCceEEEEcC-CCEEEEEccCCCccccceeeeccccc------------ccccccccccccccccccccccccccccccc
Confidence 3455666676 99999999999999999999999986 44444 566665443333333332 111
Q ss_pred -chhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263 156 -ELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213 (286)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~ 213 (286)
.+.....+..+ ...+.+.+. +......+.+|++|++.+|++++.+|++ +++|.|
T Consensus 68 ~~~~~~~tv~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l-lllDEP 135 (137)
T PF00005_consen 68 PQLFPGLTVREN---ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL-LLLDEP 135 (137)
T ss_dssp HCHHTTSBHHHH---HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE-EEEEST
T ss_pred cccccccccccc---cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE-EEEeCC
Confidence 11111111111 111112222 1111145667899999999999955554 555555
No 379
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.47 E-value=1.6e-14 Score=138.95 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=98.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh----h
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----D 153 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----~ 153 (286)
+|+++++.+.+ |++++|+||||||||||+++|+|...... ...|+ ++|.++. ...++..+ +
T Consensus 40 iL~~vs~~i~~-Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~---------~~~G~i~~~g~~~~---~~~~~~~i~yv~Q 106 (617)
T TIGR00955 40 LLKNVSGVAKP-GELLAVMGSSGAGKTTLMNALAFRSPKGV---------KGSGSVLLNGMPID---AKEMRAISAYVQQ 106 (617)
T ss_pred cccCCEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCCC---------cceeEEEECCEECC---HHHHhhhceeecc
Confidence 57888888887 99999999999999999999999864110 01333 5555432 12222211 1
Q ss_pred cc------chhhhheeccccc---CccHH----HHHHHHh-----c------C----CcEEEEeCHHHHHHHHHHhCCCc
Q 043263 154 KN------ELLEYALVYGDYK---GIPKK----QIREYMA-----K------G----YDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 154 ~~------~~~~~~~~~~~~~---~~~~~----~i~~~~~-----~------g----~~~v~~~~~q~v~iaral~~~~~ 205 (286)
++ ...++..+..... ....+ .+.+.++ . | ...+.+|++||+.+|++++.+|+
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 11 1122221111111 11111 1222211 1 1 12477899999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++ ||+.+...+.+.|++. .+.+...+.|+.+... ...||+++++++|++
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i-----~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSEL-----FELFDKIILMAEGRV 245 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHH-----HHHhceEEEeeCCeE
Confidence 8776 6666666666666543 2345566678764211 468999999998864
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.47 E-value=3e-14 Score=133.09 Aligned_cols=171 Identities=15% Similarity=0.092 Sum_probs=112.9
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCcc-
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKD- 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~- 139 (286)
...++++|+++.|+. .+.++++.+.+ |..|||+||||+|||||+++|.+... |.+|. ..|..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~-g~riaiiG~NG~GKSTLlk~l~g~~~------------~~~G~v~~g~~v 385 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDR-GDRIAIVGPNGAGKSTLLKLLAGELG------------PLSGTVKVGETV 385 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecC-CCEEEEECCCCCCHHHHHHHHhhhcc------------cCCceEEeCCce
Confidence 345899999999954 68899999998 99999999999999999999998876 44554 12332
Q ss_pred -eeeeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263 140 -YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFV 208 (286)
Q Consensus 140 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~I 208 (286)
+.+.++..- ........+++..-... ......++.. ..+....++||++-|+.+|+.++..|.++|
T Consensus 386 ~igyf~Q~~~-~l~~~~t~~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 386 KIGYFDQHRD-ELDPDKTVLEELSEGFP--DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEEEEEehhh-hcCccCcHHHHHHhhCc--cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 222222210 10011122222111100 0001122222 122334688999999999999998888888
Q ss_pred E------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 209 F------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 209 l------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
| ||.++.+.+.+.|....+ +...|+|+-... -..|+++++..+
T Consensus 463 LDEPTNhLDi~s~~aLe~aL~~f~G-tvl~VSHDr~Fl------~~va~~i~~~~~ 511 (530)
T COG0488 463 LDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRYFL------DRVATRIWLVED 511 (530)
T ss_pred EcCCCccCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcceEEEEcC
Confidence 8 888888888888888776 888888876653 256787777764
No 381
>PTZ00243 ABC transporter; Provisional
Probab=99.45 E-value=1.4e-14 Score=151.20 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=98.8
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeCHHHHHHHhhccchh
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVSKEEFLQMVDKNELL 158 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~~~~~~~~i~~~~~~ 158 (286)
.|+++++.+++ |++++|+||||||||||+++|+|+++ |..|++. ...+.++.++.. +..+...
T Consensus 675 iL~~isl~i~~-G~~~~IiG~nGsGKSTLL~~i~G~~~------------~~~G~i~~~~~i~yv~Q~~~---l~~~Tv~ 738 (1560)
T PTZ00243 675 LLRDVSVSVPR-GKLTVVLGATGSGKSTLLQSLLSQFE------------ISEGRVWAERSIAYVPQQAW---IMNATVR 738 (1560)
T ss_pred eEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCeEEEEeCCCc---cCCCcHH
Confidence 68899999998 99999999999999999999999987 4444411 111222221110 0111222
Q ss_pred hhheecccc----cC--cc----HHHH-------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263 159 EYALVYGDY----KG--IP----KKQI-------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE 215 (286)
Q Consensus 159 ~~~~~~~~~----~~--~~----~~~i-------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~ 215 (286)
++..+.... +. .. .+.+ ...+.+....+++|++||+++||+++.+|+++|| ||+.+.
T Consensus 739 enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~ 818 (1560)
T PTZ00243 739 GNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG 818 (1560)
T ss_pred HHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 222111100 00 00 0001 1112333455778999999999999999988888 666555
Q ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 216 MALVERLV--ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 216 ~~l~~rl~--~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
..+.+.+. ...+.|...++|+++. ...||+|+++++|++
T Consensus 819 ~~i~~~~~~~~~~~~TvIlvTH~~~~-------~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 819 ERVVEECFLGALAGKTRVLATHQVHV-------VPRADYVVALGDGRV 859 (1560)
T ss_pred HHHHHHHHHHhhCCCEEEEEeCCHHH-------HHhCCEEEEEECCEE
Confidence 55555432 2234477788998877 357999999988864
No 382
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.4e-12 Score=104.57 Aligned_cols=181 Identities=19% Similarity=0.254 Sum_probs=111.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-ch
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-EL 157 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~ 157 (286)
+.+|||+|++||||||+++.+.++ +....+.....|. ...|. .+|.++- .++++.++..+.++ ..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~-G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKAL-GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHc-CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 358999999999999999999854 2222222222221 11121 3444431 24566666655222 11
Q ss_pred --hhhheecccccCccHHHHHHHHhcCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH
Q 043263 158 --LEYALVYGDYKGIPKKQIREYMAKGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELL 234 (286)
Q Consensus 158 --~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~ 234 (286)
+-+.+.++.++..-.+++...+-.|+.+++ |... +..+ .+.......|.+.++ ++...+|+.+|++.+.+...
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--LFE~-~~~~~~~~tvvV~cd-~~~Ql~Rl~~Rd~lse~dAe 155 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--LFEA-KLLKICHKTVVVTCD-EELQLERLVERDELSEEDAE 155 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--HHHH-hHHhheeeEEEEEEC-cHHHHHHHHHhccccHHHHH
Confidence 223334433332233445555666765544 4443 3333 222222334445544 66777999999988999999
Q ss_pred HHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 235 VRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 235 ~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
+|+..|++-.++...+|.|+ +++|.++++.+++..++...+..
T Consensus 156 ~Rl~sQmp~~~k~~~a~~Vi-~Nng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220|consen 156 NRLQSQMPLEKKCELADVVI-DNNGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred HHHHhcCCHHHHHHhhheee-cCCCChHHHHHHHHHHHHHhcch
Confidence 99999999888888999888 55699999999999988776544
No 383
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=5.7e-13 Score=110.39 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-chh
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-ELL 158 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~~ 158 (286)
.+|||+|++||||||+++.|+.+ +...++.....+. ...|. .+|..+. .+++..++..+..+ ...
T Consensus 2 ~~igitG~igsGKst~~~~l~~~-g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSSE-GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 57999999999999999999873 3222222211110 01111 2333322 13444444443211 111
Q ss_pred h--hheecccccCccHHHHHHHHhcCC-cEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263 159 E--YALVYGDYKGIPKKQIREYMAKGY-DIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLV 235 (286)
Q Consensus 159 ~--~~~~~~~~~~~~~~~i~~~~~~g~-~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~ 235 (286)
. +...++..+....+.+......+. .++++... +... .+....+.+|+++++ .+...+|+.+|.+.+.+.+..
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~pl--L~e~-g~~~~~D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ 156 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPL--LVEK-GLDRKMDLVVVVDVD-VEERVRRLVEKRGLDEDDARR 156 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeec--eeEc-CccccCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 1 112222211111112222223332 33333322 1100 111234788899986 788889999887778999999
Q ss_pred HHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 236 RIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 236 rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
|++.+++..++...||.||. ++|+++++.+++..+++....
T Consensus 157 ri~~Q~~~~~k~~~ad~vI~-N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 157 RIAAQIPDDVRLKAADIVVD-NNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHHhcCCHHHHHHhCCEEEE-CcCCHHHHHHHHHHHHHHHHh
Confidence 99999887776788998875 558999999999999877654
No 384
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.44 E-value=5e-13 Score=109.86 Aligned_cols=171 Identities=22% Similarity=0.249 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-chhh
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-ELLE 159 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~~~ 159 (286)
+|+|+|++||||||+++.|....+...++.....+. ...|. .+|.++. .+++..++..+..+ ....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999987642222222211110 00110 1222221 13344444433111 1111
Q ss_pred --hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263 160 --YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI 237 (286)
Q Consensus 160 --~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl 237 (286)
+...++..+....+.+.+....+..++++........+..+ .+.+++++++ .+.+.+|+.+|++.+.+.+..|+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~---~D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~ 156 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL---CDRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRL 156 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh---CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 11122111111112222222223344544432111112333 3778889986 88888999999888999999999
Q ss_pred HHHHHHhhccCCCcEEEECCCCCHHHHHHHHH
Q 043263 238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~ 269 (286)
+.+.+..+....||.||.|+ |+++++..++.
T Consensus 157 ~~q~~~~~~~~~ad~vI~N~-~~~e~l~~~~~ 187 (188)
T TIGR00152 157 ASQMDIEERLARADDVIDNS-ATLADLVKQLE 187 (188)
T ss_pred HhcCCHHHHHHhCCEEEECC-CCHHHHHHHHh
Confidence 99887766678899999655 89999988875
No 385
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=1.1e-13 Score=106.33 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=89.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCC--cCCcceeee
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
.++||+...++ .|.++++++.+ |+|+.|+|||||||||++..+.|.+. .|.+ .|+ ++++++..+
T Consensus 4 ~l~nvsl~l~g~cLLa~~n~Tia~-GeivtlMGPSGcGKSTLls~~~G~La~~F~~----------~G~~~l~~~~l~~l 72 (213)
T COG4136 4 CLKNVSLRLPGSCLLANVNFTIAK-GEIVTLMGPSGCGKSTLLSWMIGALAGQFSC----------TGELWLNEQRLDML 72 (213)
T ss_pred eeeeeeecCCCceEEEeeeEEecC-CcEEEEECCCCccHHHHHHHHHhhcccCcce----------eeEEEECCeecccc
Confidence 45677777776 57889999998 99999999999999999999999875 1211 233 555555433
Q ss_pred CHH--HHHHHhhccchhhhheeccccc--------Cc-cHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263 144 SKE--EFLQMVDKNELLEYALVYGDYK--------GI-PKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD 203 (286)
Q Consensus 144 ~~~--~~~~~i~~~~~~~~~~~~~~~~--------~~-~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~ 203 (286)
+.. +..-++++.-++.+..+.+|+. +. .+.....+ ......++++|++.|+++.|+++ .
T Consensus 73 Pa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll-a 151 (213)
T COG4136 73 PAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL-A 151 (213)
T ss_pred chhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH-h
Confidence 322 2222334444444444444421 11 11112222 33345678899999999999999 5
Q ss_pred CcEEEEEecCCHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLV 223 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~ 223 (286)
.+..++||.| ...+-..|+
T Consensus 152 ~Pk~lLLDEP-FS~LD~ALR 170 (213)
T COG4136 152 QPKALLLDEP-FSRLDVALR 170 (213)
T ss_pred CcceeeeCCc-hhHHHHHHH
Confidence 5556677776 555544443
No 386
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.43 E-value=1e-14 Score=150.84 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=106.8
Q ss_pred HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+ . +|+++++.+.+ |++++|+||||||||||+++|+|+... ..+.+|+ ++|.+
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~-Ge~~aI~G~sGaGKSTLL~~Lag~~~~---------g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKP-GTLTALMGASGAGKTTLLNVLAERVTT---------GVITGGDRLVNGRP 829 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCC---------CCcceeEEEECCEE
Confidence 56788888884 1 79999999998 999999999999999999999998641 0123454 56655
Q ss_pred eeeeCHHHHHHH---hhc-cch------hhhheeccccc---CccH----HHHHHHHh-----cCCc--------EEEEe
Q 043263 140 YFFVSKEEFLQM---VDK-NEL------LEYALVYGDYK---GIPK----KQIREYMA-----KGYD--------IVLRV 189 (286)
Q Consensus 140 ~~~~~~~~~~~~---i~~-~~~------~~~~~~~~~~~---~~~~----~~i~~~~~-----~g~~--------~v~~~ 189 (286)
+. . .++.. +.| +.+ .++..+....+ .... +.+++.++ ...+ .+.+|
T Consensus 830 ~~---~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgG 905 (1394)
T TIGR00956 830 LD---S-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVE 905 (1394)
T ss_pred CC---h-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHH
Confidence 42 1 12211 111 111 22222111111 1111 11222221 1111 36678
Q ss_pred CHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC-
Q 043263 190 DIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG- 259 (286)
Q Consensus 190 ~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G- 259 (286)
++||+.+|++++.+|+.+++||+|+ ...+.+.|++. .+.+...+.|+++... ...+|+|+++++|
T Consensus 906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~-----~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAIL-----FEEFDRLLLLQKGG 980 (1394)
T ss_pred HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH-----HHhcCEEEEEcCCC
Confidence 9999999999998886555555544 55666655543 2346677789877521 2468999999876
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 981 ~i 982 (1394)
T TIGR00956 981 QT 982 (1394)
T ss_pred EE
Confidence 54
No 387
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.43 E-value=1.2e-12 Score=107.86 Aligned_cols=174 Identities=20% Similarity=0.230 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCcceee----eCHHHHHHHhhccch-
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYFF----VSKEEFLQMVDKNEL- 157 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~~----~~~~~~~~~i~~~~~- 157 (286)
+.+|||||.+||||||+++++.. ++...++.....|.. ..|. .+|.++.. +++..++..+-.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999998 433233322222210 1110 34544432 344444444322211
Q ss_pred hh--hheecccccCccHHHH---HHHHhcCCcEEEEeCHHHHHHHHHH-hCC-CcEEEEEecCCHHHHHHHHHHhcCCCH
Q 043263 158 LE--YALVYGDYKGIPKKQI---REYMAKGYDIVLRVDIQGARTLRRI-LGD-SAVFVFLAAESEMALVERLVERKTENR 230 (286)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~i---~~~~~~g~~~v~~~~~q~v~iaral-~~~-~~~~Illd~~~~~~l~~rl~~r~~~t~ 230 (286)
.. +...++ ...+.+ .+....+ .++.+.+ ++... ... .+.+|.++++ .+...+|+++|++.+.
T Consensus 81 ~~~Le~i~hP----li~~~~~~~~~~~~~~-~~~~eip-----lL~e~~~~~~~d~Vi~V~a~-~e~r~eRl~~R~~~~~ 149 (201)
T COG0237 81 RLKLEKILHP----LIRAEIKVVIDGARSP-YVVLEIP-----LLFEAGGEKYFDKVIVVYAP-PEIRLERLMKRDGLDE 149 (201)
T ss_pred HHHHHHhhhH----HHHHHHHHHHHHhhCC-ceEEEch-----HHHhccccccCCEEEEEECC-HHHHHHHHHhcCCCCH
Confidence 00 011111 111211 1222222 3344433 33222 212 3567778876 8888899999998899
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
+.+..++..+++..++...+|.|+ +++|.++.+.+++.+.++.....
T Consensus 150 e~~~~~~~~Q~~~~ek~~~ad~vi-~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 150 EDAEARLASQRDLEEKLALADVVI-DNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred HHHHHHHHhcCCHHHHHhhcCChh-hcCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999998888788999888 55589999999999998887654
No 388
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.7e-13 Score=105.63 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=83.4
Q ss_pred HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
+.+|++..-+. .|.++++.+.+ |+++.|+||||||||||+++|+|+.. |.+|+ +.|..+...
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~-Ge~~~i~G~NG~GKTtLLRilaGLl~------------p~~G~v~~~~~~i~~~- 69 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNA-GEALQITGPNGAGKTTLLRILAGLLR------------PDAGEVYWQGEPIQNV- 69 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcC-CCEEEEECCCCCcHHHHHHHHHcccC------------CCCCeEEecCCCCccc-
Confidence 44566666555 67888888888 99999999999999999999999987 77777 455554332
Q ss_pred HHHHHHHh----h------ccchhhhheecccccC-ccHHHHHHHHhc-C--------CcEEEEeCHHHHHHHHHHhCCC
Q 043263 145 KEEFLQMV----D------KNELLEYALVYGDYKG-IPKKQIREYMAK-G--------YDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 145 ~~~~~~~i----~------~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-g--------~~~v~~~~~q~v~iaral~~~~ 204 (286)
++.+.... . .-...||..++..+++ .....+.+++.. | ...++-|+..|+++||-++..+
T Consensus 70 ~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred hhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 22222211 1 1233566655555554 344555555432 1 1123447889999999888555
Q ss_pred cEEEEEecC
Q 043263 205 AVFVFLAAE 213 (286)
Q Consensus 205 ~~~Illd~~ 213 (286)
++ -+||+|
T Consensus 150 pL-WiLDEP 157 (209)
T COG4133 150 PL-WILDEP 157 (209)
T ss_pred Cc-eeecCc
Confidence 54 445555
No 389
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.39 E-value=5.6e-14 Score=118.80 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=49.5
Q ss_pred CcEEEEeCHHHHHHHHHHhCCCc-EEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 183 YDIVLRVDIQGARTLRRILGDSA-VFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~~-~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
...+++|++|++.+|++++.+|+ .++++|+|+ ...+.+.+.+. .+.+...++|+++. ...||+
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-------~~~~d~ 207 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-------IRAADH 207 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-------HHhCCE
Confidence 34566789999999999997774 555555554 44554544432 23467778898876 357999
Q ss_pred EEEC------CCCCH
Q 043263 253 VVVN------AEGKL 261 (286)
Q Consensus 253 viv~------~~G~i 261 (286)
|+++ ++|++
T Consensus 208 i~~l~~~~~~~~G~i 222 (226)
T cd03270 208 VIDIGPGAGVHGGEI 222 (226)
T ss_pred EEEeCCCccccCCEE
Confidence 9999 66655
No 390
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=3.9e-13 Score=105.27 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=87.9
Q ss_pred HHhHhHHHHhc-----c----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC--
Q 043263 68 ELLRSLEASLG-----H----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-- 136 (286)
Q Consensus 68 i~~~~v~~~~~-----~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-- 136 (286)
+.++||+++|- + .+.++++.+.. |++++|-|||||||||++++|-+.|. |++|.+.
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a-GECvvL~G~SG~GKStllr~LYaNY~------------~d~G~I~v~ 71 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA-GECVVLHGPSGSGKSTLLRSLYANYL------------PDEGQILVR 71 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecC-ccEEEeeCCCCCcHHHHHHHHHhccC------------CCCceEEEE
Confidence 56678888873 2 58899999998 99999999999999999999999886 6666521
Q ss_pred --Cc--ceeeeCHHHHHHH--------------hhccchhhhheecc-cccCccHHHHHHH--------------HhcCC
Q 043263 137 --GK--DYFFVSKEEFLQM--------------VDKNELLEYALVYG-DYKGIPKKQIREY--------------MAKGY 183 (286)
Q Consensus 137 --g~--~~~~~~~~~~~~~--------------i~~~~~~~~~~~~~-~~~~~~~~~i~~~--------------~~~g~ 183 (286)
|. |+....+.+.-.. ++.-.-++- ...+ -..+...+..... ..-..
T Consensus 72 H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdV-vaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP 150 (235)
T COG4778 72 HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV-VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP 150 (235)
T ss_pred eCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHH-HHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC
Confidence 11 1111111111111 111000000 0000 0012222221111 12234
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER 225 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r 225 (286)
.++++|+.||+.|||.++.+.+++++ ||+.+...+.+-|.+.
T Consensus 151 aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 67889999999999999988888877 7777777777776643
No 391
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.36 E-value=4.1e-13 Score=109.01 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccc-hh
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNE-LL 158 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~-~~ 158 (286)
.+|||+|+.||||||++++|.. ++...++.....+. ...|. .+|.++. .+++..++..+-.+. ..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999998 33222222211111 11121 2344332 245566665542221 11
Q ss_pred h--hheecccccCccHHHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHH
Q 043263 159 E--YALVYGDYKGIPKKQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREEL 233 (286)
Q Consensus 159 ~--~~~~~~~~~~~~~~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i 233 (286)
. +...++. ..+.+.+.+. ....++++..+-. -. .+....+.+++++++ ++...+|+.+|.+.+.+.+
T Consensus 80 ~~L~~iihP~----I~~~~~~~~~~~~~~~~~v~e~pLL~--E~-~~~~~~D~vi~V~a~-~e~ri~Rl~~R~~~~~~~~ 151 (180)
T PF01121_consen 80 KKLENIIHPL----IREEIEKFIKRNKSEKVVVVEIPLLF--ES-GLEKLCDEVIVVYAP-EEIRIKRLMERDGLSEEEA 151 (180)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHCHSTSEEEEE-TTTT--TT-TGGGGSSEEEEEE---HHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHhHH----HHHHHHHHHHhccCCCEEEEEcchhh--hh-hHhhhhceEEEEECC-HHHHHHHHHhhCCCcHHHH
Confidence 1 1112211 1223333222 1234555554311 11 122234777888886 8888899999988899999
Q ss_pred HHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263 234 LVRIATAREEVQHVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 234 ~~rl~~~~~~~~~~~~~d~viv~~~G~i~~ 263 (286)
..|++.|.+..++...||.||.|+ |++++
T Consensus 152 ~~ri~~Q~~~~~k~~~ad~vI~N~-g~~~~ 180 (180)
T PF01121_consen 152 EARIASQMPDEEKRKRADFVIDNN-GSLEE 180 (180)
T ss_dssp HHHHHTS--HHHHHHH-SEEEE-S-SHHH-
T ss_pred HHHHHhCCCHHHHHHhCCEEEECC-CCCCC
Confidence 999999999988889999999665 77754
No 392
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.35 E-value=5.2e-11 Score=98.98 Aligned_cols=174 Identities=20% Similarity=0.222 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc--cchhh---hheecc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK--NELLE---YALVYG 165 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~--~~~~~---~~~~~~ 165 (286)
+|.+|+|.|+.||||||+++.|...+...+.. ..+++.|. +.. ..+.++..+.. ..+.. ...+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~-~~~~~~p~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD-VVFTREPG-GTP--------LGEKLRELLLDPNEEMDDKTELLLFYA 71 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc-eeEeeCCC-CCh--------HHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 38899999999999999999998865321111 11222232 111 11223333221 11111 111112
Q ss_pred cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHhcC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL---GDSAVFVFLAAESEMALVERLVERKT 227 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r~~ 227 (286)
+.+....+.+...+..|..+++|- .......+...+ ..|+++|+|+.+ .+.+.+|+.+|+.
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~-~~~~~~Rl~~R~~ 150 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVP-PEVGLARIRARGE 150 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 222222333445556676666651 112222222222 368899999998 6788899998864
Q ss_pred CCH-----HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 228 ENR-----EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 228 ~t~-----~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
.+. .....++.............+.++++.+++++++.++|.+++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 151 LDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 221 123344433222222122345677788889999999999998765
No 393
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.35 E-value=1.7e-11 Score=100.42 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
..+++|+|++||||||+++.|+..++.........-|.. +.+.. .....++..+..+.+....... ...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~l 71 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAE----VASGS---ERGKQLQAIMESGDLVPLDTVL----DLL 71 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH----HhcCC---HHHHHHHHHHHCCCCCCHHHHH----HHH
Confidence 578999999999999999999976532221111000000 00000 0011122222222211111111 111
Q ss_pred HHHHHHHHhcCCcEEEEeCHHHHHHHH---HHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 043263 172 KKQIREYMAKGYDIVLRVDIQGARTLR---RILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE 242 (286)
Q Consensus 172 ~~~i~~~~~~g~~~v~~~~~q~v~iar---al~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~ 242 (286)
.+.+...+..+..+++++-...+..+. ..+..|..+|+||++ .+.+.+|+..|+.. +.+.+..|+.....
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~ 150 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYK 150 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence 122333345677788887543222222 223468889999997 78888999877532 55667777776543
Q ss_pred Hhh-----ccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 243 EVQ-----HVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 243 ~~~-----~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
... +....+.+.++.++.++++.+++.+.++.
T Consensus 151 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 151 ATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 321 11234666778888999999999988764
No 394
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.35 E-value=1.4e-13 Score=142.63 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=103.4
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHH---Hh-h
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQ---MV-D 153 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~---~i-~ 153 (286)
+|+++++.+.+ |++++|+||||||||||+++|+|..... ..+.+|+ ++|.++.... ..++. .+ +
T Consensus 76 iL~~vs~~i~~-Ge~~aIlG~nGsGKSTLLk~LaG~~~~~--------~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q 145 (1394)
T TIGR00956 76 ILKPMDGLIKP-GELTVVLGRPGSGCSTLLKTIASNTDGF--------HIGVEGVITYDGITPEEIK-KHYRGDVVYNAE 145 (1394)
T ss_pred eeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCC--------CCCceeEEEECCEehHHHH-hhcCceeEEecc
Confidence 68889999988 9999999999999999999999975210 0133444 4554331110 00110 00 1
Q ss_pred cc------chhhhheeccccc-------CccHHH-----HHHHHh-----cCC---------cEEEEeCHHHHHHHHHHh
Q 043263 154 KN------ELLEYALVYGDYK-------GIPKKQ-----IREYMA-----KGY---------DIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 154 ~~------~~~~~~~~~~~~~-------~~~~~~-----i~~~~~-----~g~---------~~v~~~~~q~v~iaral~ 201 (286)
++ ...++..+..... +...++ .+..++ ... ..+++|++||+.+|++++
T Consensus 146 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 146 TDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 11 1112111110000 111111 111211 111 236789999999999999
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHH-HHHHHhhccCCCcEEEECCCCCHH--HHHHHHH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIA-TAREEVQHVKNFDYVVVNAEGKLD--SAVKLVE 269 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~-~~~~~~~~~~~~d~viv~~~G~i~--~~~~~l~ 269 (286)
.+|+++++ ||+.+...+.+.|++. .+.+...+.|+.. .. ...+|+|+++++|++. ...+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i------~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDA------YELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH------HHhhceEEEEeCCeEEEECCHHHHH
Confidence 88888777 7777777777766653 2335566677653 32 3689999999988651 2234444
Q ss_pred HHHHH
Q 043263 270 SVIDA 274 (286)
Q Consensus 270 ~~i~~ 274 (286)
+.++.
T Consensus 300 ~yF~~ 304 (1394)
T TIGR00956 300 QYFEK 304 (1394)
T ss_pred HHHHH
Confidence 44443
No 395
>PRK01184 hypothetical protein; Provisional
Probab=99.35 E-value=8.6e-11 Score=96.15 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=65.5
Q ss_pred CCcEEEEeC--HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHH--HhhccCCCcEE
Q 043263 182 GYDIVLRVD--IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIATARE--EVQHVKNFDYV 253 (286)
Q Consensus 182 g~~~v~~~~--~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~~--~~~~~~~~d~v 253 (286)
+..+++++- ...+..++..+..+..+|+++++ .+.+.+|+..|++ .+.+.+..|...+.+ ..+....||.+
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~v 158 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYM 158 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEE
Confidence 456777763 33344556666445678889986 7888899988763 245677777766532 33445789998
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHh
Q 043263 254 VVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 254 iv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
|. ++|+++++..++.++++....
T Consensus 159 I~-N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 159 IV-NDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred Ee-CCCCHHHHHHHHHHHHHHHhc
Confidence 86 558999999999999876543
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=99.34 E-value=9.1e-14 Score=143.77 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHH-HHHHHhhccCCCcEEE
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIA-TAREEVQHVKNFDYVV 254 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~-~~~~~~~~~~~~d~vi 254 (286)
.+++|++||+.+|++++.+|+++++ ||+.+...+.+.|++. .+.|...+.|+.. .. ...||+|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i------~~lfD~vi 409 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET------FDLFDDII 409 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH------HHHhheEE
Confidence 3668999999999999988888777 7777777777766653 2335555567542 22 36899999
Q ss_pred ECCCCCHH--HHHHHHHHHHHHH
Q 043263 255 VNAEGKLD--SAVKLVESVIDAE 275 (286)
Q Consensus 255 v~~~G~i~--~~~~~l~~~i~~~ 275 (286)
++++|++. ...+++...++++
T Consensus 410 lL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 410 LLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred EeeCceEEEeCCHHHHHHHHHHc
Confidence 99988752 2334555555443
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.31 E-value=8.6e-12 Score=113.45 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=116.9
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-Cccee
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYF 141 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~ 141 (286)
..+.++|++|.|.. .+.++++-+.. +..++++||||+||||+++++.+.+. |..|.+- +....
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~-~srvAlVGPNG~GKsTLlKl~~gdl~------------p~~G~vs~~~H~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDL-DSRVALVGPNGAGKSTLLKLITGDLQ------------PTIGMVSRHSHNK 454 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCc-ccceeEecCCCCchhhhHHHHhhccc------------ccccccccccccc
Confidence 45788999999975 68888888887 89999999999999999999999876 5555521 11111
Q ss_pred ee--CHHHHHHHhhccchhhhh-eecccccCccHHHHHHHHhc----------CCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263 142 FV--SKEEFLQMVDKNELLEYA-LVYGDYKGIPKKQIREYMAK----------GYDIVLRVDIQGARTLRRILGDSAVFV 208 (286)
Q Consensus 142 ~~--~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~----------g~~~v~~~~~q~v~iaral~~~~~~~I 208 (286)
+. ++..-..+-.+...+++. ..+.. ....+.++..+.. -...+++|++.|+..++..+..|.++|
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl 532 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL 532 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc--cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE
Confidence 10 000000000000001110 11111 1122333333221 112366899999999999997777777
Q ss_pred E------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 209 F------LAAESEMALVERLVERKTENREELLVRIATAREEVQH-VKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 209 l------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~-~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
| ||.++...+.+.|.+..+ +...+.|+.....+..+. ....|.-+...+|+++.-..++.+.+...
T Consensus 533 LDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~e 605 (614)
T KOG0927|consen 533 LDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKE 605 (614)
T ss_pred ecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhhh
Confidence 7 777777788888887765 566666654432221111 24556666667788988777777555443
No 398
>PRK04040 adenylate kinase; Provisional
Probab=99.31 E-value=7.3e-11 Score=96.78 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=53.8
Q ss_pred CCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHhh----ccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATAREEVQ----HVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~~~----~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.|..+|++++++...+.+|+.. |+..+.+.+..++..+..+.. .....+.+|+|++|.++++++++.+++
T Consensus 110 ~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 110 NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 7889999999888777777753 555577888777776665422 224589999999999999999998876
No 399
>PRK06762 hypothetical protein; Provisional
Probab=99.30 E-value=1.6e-10 Score=92.89 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc-ccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD-YKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 170 (286)
+.+|+|+|++||||||+++.|+..++ ..+..++.+.++..+.... ...+. ....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~--------------------~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~ 56 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG--------------------RGTLLVSQDVVRRDMLRVK-----DGPGNLSIDL 56 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--------------------CCeEEecHHHHHHHhcccc-----CCCCCcCHHH
Confidence 46899999999999999999998753 1233344455444321100 00000 0011
Q ss_pred cHHHHHHHHhcCCcEEEEeCH------HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVDI------QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT---ENREELLVRIATAR 241 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~------q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~ 241 (286)
..+.+...+..|..+++++-. ..+..++.....+..+|+||++ .+.+.+|..+|.. .+...+...+
T Consensus 57 ~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~---- 131 (166)
T PRK06762 57 IEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWW---- 131 (166)
T ss_pred HHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHH----
Confidence 122233445667777776532 1133333344446688999997 6678888887754 2344443333
Q ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.+.+....++.++++++.++.+++.++.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 132 NPHDTLGVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred hhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 22232345788888887799999998887653
No 400
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.30 E-value=1.1e-12 Score=122.62 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=101.3
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF 141 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~ 141 (286)
+..+.++|++..-+. .+.+.++.+.+ |+-+-|.|+||||||||+|.|+|+.+...+.+.. | .+.+..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~-G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~----P-----~~~~~l 459 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRP-GERLLITGESGAGKTSLLRALAGLWPWGSGRISM----P-----ADSALL 459 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCC-CCEEEEECCCCCCHHHHHHHHhccCccCCCceec----C-----CCCceE
Confidence 356888888887765 57888999998 9999999999999999999999998744333321 2 122233
Q ss_pred eeCHHHHHHHhhccchhhhheecccccCccHHHHHHHH------------hc---CCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYM------------AK---GYDIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~---g~~~v~~~~~q~v~iaral~~~~~~ 206 (286)
++++.. .++++.+.+-..+-......+.+++.+++ ++ -..++.+|+.||++.||.+++.|..
T Consensus 460 flpQ~P---Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 460 FLPQRP---YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred EecCCC---CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 333211 12222222222121111113333333332 11 1245778999999999999988888
Q ss_pred EEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 043263 207 FVF------LAAESEMALVERLVER-KTENREELLVRIAT 239 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~ 239 (286)
+++ ||++++..+.+-++++ .+.+.+.|.||-..
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl 576 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL 576 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence 887 7777776776666653 33355566665443
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.28 E-value=4.2e-12 Score=113.38 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=101.3
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee--
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV-- 143 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~-- 143 (286)
.++..++.+.|+. .|....-.+.. |++++++||||-||||++++|+|.+. |++|......+...
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~-gEvigilGpNgiGKTTFvk~LAG~ik------------Pdeg~~~~~~vSyKPQ 408 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYD-GEVIGILGPNGIGKTTFVKLLAGVIK------------PDEGSEEDLKVSYKPQ 408 (591)
T ss_pred eeecchheeecCceEEEecCCeeec-ceEEEEECCCCcchHHHHHHHhcccc------------CCCCCCccceEeecce
Confidence 3556677888886 45555566665 99999999999999999999999886 66665212222211
Q ss_pred --------CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------
Q 043263 144 --------SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------ 209 (286)
Q Consensus 144 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ 209 (286)
+-+++-.......+.. .++.+- -...-.+...+++....+++|++||+++|.++.+..+++++
T Consensus 409 yI~~~~~gtV~~~l~~~~~~~~~~--s~~~~e-i~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 409 YISPDYDGTVEDLLRSAIRSAFGS--SYFKTE-IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred eecCCCCCcHHHHHHHhhhhhccc--chhHHh-hcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 1111111111111110 000000 00111244556666677899999999999999877777776
Q ss_pred EecCCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 210 LAAESEM---ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 210 ld~~~~~---~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
||..... ..++|+.+....+..++.|++... --.+|+++|..
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~------dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI------DYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehh------hhhhceEEEEe
Confidence 4443111 233455544444666778877663 24699999987
No 402
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.26 E-value=3.2e-11 Score=98.33 Aligned_cols=158 Identities=25% Similarity=0.296 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-hh
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-LE 159 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~~ 159 (286)
+|+|+|++||||||+++.|.. ++...++.....+.. ..|. .+|.++. .+++..++..+..+.- ..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999988 443333322222211 1111 2344332 2445555555422211 10
Q ss_pred --hheecccccCccHHHHHHHHhc---CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH
Q 043263 160 --YALVYGDYKGIPKKQIREYMAK---GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELL 234 (286)
Q Consensus 160 --~~~~~~~~~~~~~~~i~~~~~~---g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~ 234 (286)
+...++. ..+.+.+.+.. ...+++++..-.-.-...+ .+.+++++++ .+...+|+.+|++.+...+.
T Consensus 80 ~l~~i~hp~----i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~---~D~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~ 151 (179)
T cd02022 80 KLEAITHPL----IRKEIEEQLAEARKEKVVVLDIPLLFETGLEKL---VDRVIVVDAP-PEIQIERLMKRDGLSEEEAE 151 (179)
T ss_pred HHHHHHHHH----HHHHHHHHHHHccCCCEEEEEehHhhcCCcHHh---CCeEEEEECC-HHHHHHHHHHcCCCCHHHHH
Confidence 1122221 12223322222 2344455433111111222 3788889987 78888999999888999999
Q ss_pred HHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 235 VRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 235 ~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.|+..|....++...||.||.|+ |.+
T Consensus 152 ~r~~~Q~~~~~~~~~aD~vI~N~-~~~ 177 (179)
T cd02022 152 ARIASQMPLEEKRARADFVIDNS-GSL 177 (179)
T ss_pred HHHHhcCCHHHHHHhCCEEEECc-CCC
Confidence 99999887777778999999766 544
No 403
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.26 E-value=1.4e-10 Score=96.86 Aligned_cols=86 Identities=12% Similarity=0.162 Sum_probs=52.0
Q ss_pred cEEEEeCHHHH-HHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH------hhccCCCcE
Q 043263 184 DIVLRVDIQGA-RTLRRILGDSAVFVFLAAESEMALVERLVERK----TENREELLVRIATAREE------VQHVKNFDY 252 (286)
Q Consensus 184 ~~v~~~~~q~v-~iaral~~~~~~~Illd~~~~~~l~~rl~~r~----~~t~~~i~~rl~~~~~~------~~~~~~~d~ 252 (286)
.++++|-.-.. .-++.++ +..|||+++ .+..++|...|. +.+.+.+..++..+... .+....||.
T Consensus 108 ~vivEg~~l~~~~~~~~~~---d~~I~v~~~-~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~ 183 (209)
T PRK05480 108 VIILEGILLLEDERLRDLM---DIKIFVDTP-LDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADI 183 (209)
T ss_pred EEEEEeehhcCchhHhhhh---ceeEEEeCC-hhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeE
Confidence 45556543211 2223344 889999998 555556655554 45777777777665432 334568898
Q ss_pred EEECC---CCCHHHHHHHHHHHHH
Q 043263 253 VVVNA---EGKLDSAVKLVESVID 273 (286)
Q Consensus 253 viv~~---~G~i~~~~~~l~~~i~ 273 (286)
||.++ .+.++++.++|..+++
T Consensus 184 vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 184 IIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred EecCCCcchHHHHHHHHHHHHHhh
Confidence 88643 1267777777777654
No 404
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.26 E-value=2.8e-10 Score=92.36 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc-eeeeCHHHHHH---Hhhccc-hhhh-heecc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD-YFFVSKEEFLQ---MVDKNE-LLEY-ALVYG 165 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~-~~~~~~~~~~~---~i~~~~-~~~~-~~~~~ 165 (286)
|.+|.|+|++||||||+++.|...++..... .|.| +.......+.. .+.... +.+. ....+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~-------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLH-------------FGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFR 68 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccc-------------cCccHHHHhcChhhcccccccccCccCCcccchHHH
Confidence 7899999999999999999999765310000 0111 11100000000 000000 0000 01222
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR 241 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~ 241 (286)
+.|+...+.+...+..|..++++... +....++.+...+-.+|+++++ .+.+.+|+.+|+........+ +.
T Consensus 69 ~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~~~~~~~~----~~ 143 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPGQARK----QA 143 (175)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCccchHHHH----HH
Confidence 34555556677788999999998532 2223445555445677779987 688889999887532222111 11
Q ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.........|.++-.+..++++.+++|.+.+
T Consensus 144 ~~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 144 RVVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred HHhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 1111123456665444347999988887654
No 405
>PLN03140 ABC transporter G family member; Provisional
Probab=99.25 E-value=1.8e-12 Score=134.26 Aligned_cols=177 Identities=12% Similarity=0.182 Sum_probs=102.1
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---h-h
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---V-D 153 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i-~ 153 (286)
.|+++++.+.+ |++++|+||||||||||+++|+|.... + +.+|+ ++|.+.. ...++.. + +
T Consensus 895 iL~~vs~~i~~-Gel~aL~G~sGaGKTTLL~~LaG~~~~--g--------~~~G~I~inG~~~~---~~~~~~~igyv~Q 960 (1470)
T PLN03140 895 LLREVTGAFRP-GVLTALMGVSGAGKTTLMDVLAGRKTG--G--------YIEGDIRISGFPKK---QETFARISGYCEQ 960 (1470)
T ss_pred EeeCcEEEEEC-CeEEEEECCCCCCHHHHHHHHcCCCCC--C--------cccceEEECCccCC---hHHhhhheEEEcc
Confidence 68889999998 999999999999999999999997531 0 12343 4454321 1112211 1 1
Q ss_pred cc------chhhhheeccccc---CccHH----HHHHHHh--------cCC------cEEEEeCHHHHHHHHHHhCCCcE
Q 043263 154 KN------ELLEYALVYGDYK---GIPKK----QIREYMA--------KGY------DIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 154 ~~------~~~~~~~~~~~~~---~~~~~----~i~~~~~--------~g~------~~v~~~~~q~v~iaral~~~~~~ 206 (286)
++ ...++..+..... ..+.+ .+++.++ +.. ..+++|++||+.+|++++.+|++
T Consensus 961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence 11 1122221111110 11111 1222211 111 24677899999999999988888
Q ss_pred EEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-CCH------HHHHHHHHHH
Q 043263 207 FVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE-GKL------DSAVKLVESV 271 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-G~i------~~~~~~l~~~ 271 (286)
+++ ||+.+...+.+.|++. .+.+...+.|+.+... ...||+++++++ |++ .+-..++.+.
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i-----~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~y 1115 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI-----FEAFDELLLMKRGGQVIYSGPLGRNSHKIIEY 1115 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-----HHhCCEEEEEcCCCEEEEECCcccccccHHHH
Confidence 555 4554455666655543 2336666688776311 357899999975 553 2223456666
Q ss_pred HHHH
Q 043263 272 IDAE 275 (286)
Q Consensus 272 i~~~ 275 (286)
+++.
T Consensus 1116 F~~~ 1119 (1470)
T PLN03140 1116 FEAI 1119 (1470)
T ss_pred HHhc
Confidence 6654
No 406
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.24 E-value=1.6e-12 Score=129.45 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=119.5
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..+.++++++.|+. ++.++++.+++ |++.|+.|+|||||||+.++|.|... |+.|+ +.|.++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~-gecfgLLG~NGAGKtT~f~mltG~~~------------~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPP-GECFGLLGVNGAGKTTTFKMLTGETK------------PTSGEALIKGHDI 629 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecC-CceEEEecCCCCCchhhHHHHhCCcc------------CCcceEEEecCcc
Confidence 34667788888875 46788899998 99999999999999999999999876 77777 666666
Q ss_pred eee-CHHHHHHHh----------hccchhhhheecccccCccHHHHHHHH-------------hcCCcEEEEeCHHHHHH
Q 043263 141 FFV-SKEEFLQMV----------DKNELLEYALVYGDYKGIPKKQIREYM-------------AKGYDIVLRVDIQGART 196 (286)
Q Consensus 141 ~~~-~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~g~~~v~~~~~q~v~i 196 (286)
... +.......+ +.-+-.|+...++.+.|+...++.+.+ ......+.+|.+.++..
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHH
Confidence 432 121222222 222335666777777776654444331 12234566889999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|.+++++|.++++ +||.++..++.-+. +.+. .....+|-++.+ -..|||+.++-+|++
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLTSHsMeE~------EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHSMEEA------EALCTRTAIMVIGQL 776 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHH------HHHhhhhheeecCee
Confidence 9999977777776 66655666655444 3322 344446766654 267999888888864
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5.7e-11 Score=105.82 Aligned_cols=187 Identities=19% Similarity=0.167 Sum_probs=112.3
Q ss_pred HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-c--ce
Q 043263 67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-K--DY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~--~~ 140 (286)
.+-+.+|+|.|++ .+..+++-+-- ...|+|+||||.||||++++|.|.+. |..|+..- . .+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDm-dSRiaIVGPNGVGKSTlLkLL~Gkl~------------P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDM-DSRIAIVGPNGVGKSTLLKLLIGKLD------------PNDGELRKNHRLRI 652 (807)
T ss_pred eeecccccccCCCCCchhhcccccccc-cceeEEECCCCccHHHHHHHHhcCCC------------CCcchhhccceeee
Confidence 4678999999976 57777877765 67799999999999999999999987 77776221 1 12
Q ss_pred eeeCHHHHHHHhhccchhhhheecccccCccHHHHHHHH-----hcCCcE-----EEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 141 FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYM-----AKGYDI-----VLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~g~~~-----v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
.+.++..-..+-......++.. ..+.++.+..+..+ ..+..+ +++|+..|++++.-.++.|+++|+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLq---r~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQ---RKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred echhhhhHHhhccccCHHHHHH---HhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 2222222112211112222211 11122333333332 222222 447899999999877888888888
Q ss_pred -----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC------CCHHHHHHHHHHHHHHH
Q 043263 210 -----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE------GKLDSAVKLVESVIDAE 275 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~------G~i~~~~~~l~~~i~~~ 275 (286)
||..+...+.+.|.+..+ ..++++|+-.... ...|...+|-+. |+.++-..++.+.+...
T Consensus 730 EPTNNLDIESIDALaEAIney~G-gVi~VsHDeRLi~-----eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv 800 (807)
T KOG0066|consen 730 EPTNNLDIESIDALAEAINEYNG-GVIMVSHDERLIV-----ETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEV 800 (807)
T ss_pred CCCCCcchhhHHHHHHHHHhccC-cEEEEecccceee-----ecCceEEEEccCChhhccccHHHHHHHHHHHHHHH
Confidence 777777777777777655 5666666433210 245666555442 34555555665555443
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.22 E-value=8.6e-12 Score=114.26 Aligned_cols=175 Identities=19% Similarity=0.181 Sum_probs=105.8
Q ss_pred hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263 65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY 140 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~ 140 (286)
++.|++++|++.-+. .++++++.++. |..+.|+||||||||+|++.|.|+.+...+.+.. |..|.. .++
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~-g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k----~~~~~~--~~l 503 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPS-GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK----PTDGGP--KDL 503 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecC-CCeEEEECCCCCchhHHHHHHhcccccCCCeEEe----cccCCC--Cce
Confidence 466888888887664 46778999998 9999999999999999999999998744444332 111100 233
Q ss_pred eeeCHH------HHHHHhhccchhhhheecccccCccHHHHHHHH-----------hcC---------CcEEEEeCHHHH
Q 043263 141 FFVSKE------EFLQMVDKNELLEYALVYGDYKGIPKKQIREYM-----------AKG---------YDIVLRVDIQGA 194 (286)
Q Consensus 141 ~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~g---------~~~v~~~~~q~v 194 (286)
.++++. .+++.+ -+ ............+.+.+.+.+ ..| .++++.|+.||+
T Consensus 504 fflPQrPYmt~GTLRdQv---IY-P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 504 FFLPQRPYMTLGTLRDQV---IY-PLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred EEecCCCCccccchhhee---ec-cCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 333221 111111 00 000000111112222222110 111 245667899999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
+.||-++..|.+.|+ ++.+.|..+-+.+++. +.|.+.|-||-+- .+..|.++-++.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-giT~iSVgHRkSL-------~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-GITFISVGHRKSL-------WKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-CCeEEEeccHHHH-------HhhhhEEEEecC
Confidence 999999988888888 5555455554445444 4477888999887 366777776653
No 409
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.21 E-value=6.1e-12 Score=105.44 Aligned_cols=76 Identities=9% Similarity=-0.109 Sum_probs=48.9
Q ss_pred HhcCCcEEEEeCHHHHHHHHHHhCC----------CcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHH
Q 043263 179 MAKGYDIVLRVDIQGARTLRRILGD----------SAVFVF------LAAESEMALVERLVERK--TENREELLVRIATA 240 (286)
Q Consensus 179 ~~~g~~~v~~~~~q~v~iaral~~~----------~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~ 240 (286)
+......+.+|+.|++.++++++.. |+++|+ +|+.....+.+.+.+.. +.+...++|+++..
T Consensus 117 l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~ 196 (213)
T cd03279 117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELK 196 (213)
T ss_pred hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHH
Confidence 3444456778899999999999742 334444 44443445545454331 33667778877754
Q ss_pred HHHhhccCCCcEEEECCCCC
Q 043263 241 REEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 241 ~~~~~~~~~~d~viv~~~G~ 260 (286)
...+|+++++++|.
T Consensus 197 ------~~~~~~i~~~~~~~ 210 (213)
T cd03279 197 ------ERIPQRLEVIKTPG 210 (213)
T ss_pred ------HhhCcEEEEEecCC
Confidence 36789999888774
No 410
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.20 E-value=7.7e-12 Score=107.38 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=48.3
Q ss_pred CcEEEEeCHHHHHHHHHHhCC---CcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 183 YDIVLRVDIQGARTLRRILGD---SAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~---~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
...+++|+.||+.+|+++..+ |.++|+ ||+.+...+.+.+.+. .+.+...++|.++. ...||
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~-------i~~aD 239 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV-------IKCAD 239 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-------HHhCC
Confidence 345667899999999999975 345444 4444444555544432 23477778898876 35699
Q ss_pred EEEEC------CCCCH
Q 043263 252 YVVVN------AEGKL 261 (286)
Q Consensus 252 ~viv~------~~G~i 261 (286)
+++++ ++|++
T Consensus 240 ~ii~Lgp~~g~~~G~i 255 (261)
T cd03271 240 WIIDLGPEGGDGGGQV 255 (261)
T ss_pred EEEEecCCcCCCCCEE
Confidence 99999 56654
No 411
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.18 E-value=1e-10 Score=106.55 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccch--
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-- 157 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-- 157 (286)
.+|||+|++||||||++++|..+ +...++.....+. ...|. .+|.++. .+++..++..+..+.-
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~-G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAEL-GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 47999999999999999999874 3222221111111 01111 2333321 2455555555422111
Q ss_pred -hhhheecccccCccHHHHHHHHh--cCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHH
Q 043263 158 -LEYALVYGDYKGIPKKQIREYMA--KGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREEL 233 (286)
Q Consensus 158 -~~~~~~~~~~~~~~~~~i~~~~~--~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i 233 (286)
..+...++.. .+.+.+.+. .+..+++ +... +.-. .+....+.+|+|+++ .+...+|+.++.+.+...+
T Consensus 81 ~~le~i~hP~I----~~~i~~~i~~~~~~~vvv~eipL--L~E~-~~~~~~D~iI~V~ap-~e~ri~Rl~~rRg~s~~~a 152 (395)
T PRK03333 81 AVLNGIVHPLV----GARRAELIAAAPEDAVVVEDIPL--LVES-GMAPLFHLVVVVDAD-VEVRVRRLVEQRGMAEADA 152 (395)
T ss_pred HHHHHhhhHHH----HHHHHHHHHhcCCCCEEEEEeee--eecC-CchhhCCEEEEEECC-HHHHHHHHHhcCCCCHHHH
Confidence 0111122221 122223222 2223333 3221 1000 111123788999997 7888899988666688888
Q ss_pred HHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 234 LVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 234 ~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..++..+....++...||.+|. ++|+++++..++.++++.
T Consensus 153 ~~ri~~Q~~~e~k~~~AD~vId-N~~s~e~l~~~v~~~l~~ 192 (395)
T PRK03333 153 RARIAAQASDEQRRAVADVWLD-NSGTPDELVEAVRALWAD 192 (395)
T ss_pred HHHHHhcCChHHHHHhCCEEEE-CCCCHHHHHHHHHHHHHH
Confidence 8888887766666788998876 568999999999888775
No 412
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=6.6e-12 Score=120.22 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=93.4
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc---ceeeeeecccCCCCCCcCCcceeeeCHHHHHHH---h-
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS---LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM---V- 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~---~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~---i- 152 (286)
.|++++....+ |++.||+||||||||||+++|+|.... ..+.+. ++|+.. +...++.. +
T Consensus 45 iL~~vsg~~~~-Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il----------vNG~~~---~~~~~~~~s~yV~ 110 (613)
T KOG0061|consen 45 ILKGVSGTAKP-GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL----------LNGRPR---DSRSFRKISGYVQ 110 (613)
T ss_pred eeeCcEEEEec-CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE----------ECCccC---chhhhhheeEEEc
Confidence 68888888888 999999999999999999999998641 222222 555321 22222221 1
Q ss_pred hccch------hhhheeccccc--C-ccHH----HHHHHH-----hcCCcE---------EEEeCHHHHHHHHHHhCCCc
Q 043263 153 DKNEL------LEYALVYGDYK--G-IPKK----QIREYM-----AKGYDI---------VLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 153 ~~~~~------~~~~~~~~~~~--~-~~~~----~i~~~~-----~~g~~~---------v~~~~~q~v~iaral~~~~~ 205 (286)
+++.+ .|...+.+..+ . .+.+ .+++.+ .+-.++ +.+|+++|+.+|..++.+|.
T Consensus 111 QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~ 190 (613)
T KOG0061|consen 111 QDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPS 190 (613)
T ss_pred ccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCC
Confidence 22222 23222222221 1 1222 222221 122233 44589999999999997777
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
++++ ||..+...+++-|++. .+.++....|+.+... ...+|+++++..|+
T Consensus 191 iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~l-----f~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 191 ILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSEL-----FELFDKLLLLSEGE 248 (613)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHH-----HHHHhHhhhhcCCc
Confidence 7666 5555455555555442 2435444456555432 45678888777664
No 413
>PRK14530 adenylate kinase; Provisional
Probab=99.16 E-value=1.4e-09 Score=91.27 Aligned_cols=169 Identities=21% Similarity=0.247 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH--HHHHHHhhccchhhhheecccccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK--EEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+..|+|+|++||||||+++.|++.++..++++...-+.. .+.++..... ......+..+.+... .
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~d--------~ 69 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRAN-----KQMDISDMDTEYDTPGEYMDAGELVPD--------A 69 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHh-----ccCCcccccchHHHHHHHHHcCCCCCH--------H
Confidence 567999999999999999999988763333322111100 0111111100 001111111111110 0
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHH--hCCCcEEEEEecCCHHHHHHHHHHhc---------------------
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRI--LGDSAVFVFLAAESEMALVERLVERK--------------------- 226 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral--~~~~~~~Illd~~~~~~l~~rl~~r~--------------------- 226 (286)
.....+...+......+++|-......+..+ ...+..+|+||.+ .+.+.+|+..|.
T Consensus 70 ~~~~~l~~~l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 148 (215)
T PRK14530 70 VVNEIVEEALSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGV 148 (215)
T ss_pred HHHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCccccc
Confidence 1122334444545567777744333333332 2368899999997 777778886542
Q ss_pred ------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 ------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 ------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.+..|+.........+ ...-.+.++.+++++++.++|.+.+.+
T Consensus 149 ~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 149 CDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 225677888988766533221 222345667778999999999988764
No 414
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.16 E-value=1.1e-09 Score=90.28 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTENR-----EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~-----~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.|+++|+++++ .+.+.+|+.+|+.... .....++.............+.++++.+++++++.+++.+.|.
T Consensus 125 ~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 125 KPDLTILLDID-PEVGLARIEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred CCCEEEEEeCC-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 68899999997 6788899998865322 2233333332222111112456777888899999999988765
No 415
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.16 E-value=1e-11 Score=103.26 Aligned_cols=80 Identities=11% Similarity=-0.050 Sum_probs=55.7
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHH------HHHHHHHhCCCcEEEE------EecCCHH-HHHHHHHHhc---CCCHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQG------ARTLRRILGDSAVFVF------LAAESEM-ALVERLVERK---TENREELL 234 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~------v~iaral~~~~~~~Il------ld~~~~~-~l~~rl~~r~---~~t~~~i~ 234 (286)
....+.+.+.+....+.+|+.|+ +++++++...|+++++ ||+.... .+.+.+.+.. +.+...++
T Consensus 101 ~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiit 180 (204)
T cd03240 101 HQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVIT 180 (204)
T ss_pred chHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 34456666666677788899995 6788999878888877 7766566 6666665432 33566778
Q ss_pred HHHHHHHHHhhccCCCcEEEECC
Q 043263 235 VRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 235 ~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
|.... ...||++++++
T Consensus 181 H~~~~-------~~~~d~i~~l~ 196 (204)
T cd03240 181 HDEEL-------VDAADHIYRVE 196 (204)
T ss_pred ecHHH-------HhhCCEEEEEe
Confidence 87654 35689888764
No 416
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.15 E-value=3.6e-09 Score=85.86 Aligned_cols=163 Identities=13% Similarity=0.143 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
|++++|+|+|||||||+++.|++++... .++|.++.. ....+.+...-.+.+. ....+. ...
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~--------------~i~gd~~~~--~~~~r~~~~g~~~~~~-~~~~~~-~~~ 64 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAK--------------FIDGDDLHP--AKNIDKMSQGIPLTDE-DRLPWL-ERL 64 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCE--------------EECCcccCC--HhHHHHHhcCCCCCcc-cchHHH-HHH
Confidence 8999999999999999999999986521 144554422 1122222111111111 000000 000
Q ss_pred HHHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhc
Q 043263 172 KKQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQH 246 (286)
Q Consensus 172 ~~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~ 246 (286)
.+.....+. .|..+......+.-.+++... .+..+|+|+++ .+.+.+|+.+|.+. +...+.+++.... ...
T Consensus 65 ~~~~~~~~~~~~~g~iv~s~~~~~~R~~~r~~~-~~~~~v~l~a~-~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e--~~~ 140 (176)
T PRK09825 65 NDASYSLYKKNETGFIVCSSLKKQYRDILRKSS-PNVHFLWLDGD-YETILARMQRRAGHFMPPDLLQSQFDALE--RPC 140 (176)
T ss_pred HHHHHHHHhcCCCEEEEEEecCHHHHHHHHhhC-CCEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHcC--CCC
Confidence 011111112 222121222333345555543 56678889986 88999999988542 4444444333221 111
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
....+-+.++.++.++++..++.+.+....
T Consensus 141 ~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~ 170 (176)
T PRK09825 141 ADEHDIARIDVNHDIENVTEQCRQAVQAFR 170 (176)
T ss_pred CCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence 233567788888888888877777776544
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.14 E-value=3.6e-10 Score=91.80 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|.+|+|+|++||||||+++.|.+.+.. .+....+++.+.++..+....+..... . ... .
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~-----------------~~~~~~~~~~d~~r~~~~~~~~~~~~~-~-~~~-~ 65 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL-----------------KYSNVIYLDGDELREILGHYGYDKQSR-I-EMA-L 65 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-----------------cCCcEEEEecHHHHhhcCCCCCCHHHH-H-HHH-H
Confidence 5899999999999999999999887630 112222333344443322111000000 0 000 0
Q ss_pred cHHHHHH-HHhcCCcEEEEeCH-H--HHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHh
Q 043263 171 PKKQIRE-YMAKGYDIVLRVDI-Q--GARTLRRILGDSAVFVFLAAESEMALVERLVER--KTENREELLVRIATAREEV 244 (286)
Q Consensus 171 ~~~~i~~-~~~~g~~~v~~~~~-q--~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~ 244 (286)
....+.+ ....|..+++++.. . -...++..+ .+.++|||+++ .+.+.+|+... .......+..++..+.+..
T Consensus 66 ~~~~l~~~l~~~g~~VI~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (176)
T PRK05541 66 KRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHL-PNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVDIPFD 143 (176)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHhhc-CCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCCCccc
Confidence 0111222 23456666665432 1 233445554 45678889987 67777886532 0111122333333322222
Q ss_pred hccCCCcEEEECCC-CCHHHHHHHHHHHHHH
Q 043263 245 QHVKNFDYVVVNAE-GKLDSAVKLVESVIDA 274 (286)
Q Consensus 245 ~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~ 274 (286)
+ ..||.+|.+++ .++++.++++.+.++.
T Consensus 144 ~--~~Ad~vI~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 144 E--PKADLVIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred C--CCCCEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 34888887764 3788888877776654
No 418
>PRK14531 adenylate kinase; Provisional
Probab=99.13 E-value=2.6e-09 Score=87.32 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
..|.|+||+||||||+++.|+..+...+++....-|.-- ..+.+ ........+..+.+.... +..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~---~~~~~----~~~~~~~~~~~G~~v~d~--------l~~ 67 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEV---AAGSA----LGQEAEAVMNRGELVSDA--------LVL 67 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHH---hcCCH----HHHHHHHHHHcCCCCCHH--------HHH
Confidence 358999999999999999999877533333221111000 00000 001112222222211110 111
Q ss_pred HHHHHHHh--cCCcEEEEeCHHHHHHHH---HHh----CCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 043263 173 KQIREYMA--KGYDIVLRVDIQGARTLR---RIL----GDSAVFVFLAAESEMALVERLVERKT--ENREELLVRIATAR 241 (286)
Q Consensus 173 ~~i~~~~~--~g~~~v~~~~~q~v~iar---al~----~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~ 241 (286)
..+.+.+. .+...+++|-+.....+. .++ ..+..+|+++++ .+.+.+|+..|+. .+.+.+..|++.+.
T Consensus 68 ~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~ 146 (183)
T PRK14531 68 AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYR 146 (183)
T ss_pred HHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 11222222 244567777542222222 111 245668889997 8889999988754 35677888887765
Q ss_pred HHhhcc-C----CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 242 EEVQHV-K----NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 242 ~~~~~~-~----~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.....+ + ..-.+.++.+++++++..++.+.+
T Consensus 147 ~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 147 EKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 533221 1 122455677789999999988765
No 419
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.7e-09 Score=86.01 Aligned_cols=169 Identities=23% Similarity=0.312 Sum_probs=104.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+..||.++|++||||-|.+..|.+.|+..+.+..+.-|.-..-. |.+ ....+...+.++.++... +
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse----~g~~I~~~i~~G~iVP~e--------i 72 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSE----RGALIKEIIKNGDLVPVE--------I 72 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cCh----HHHHHHHHHHcCCcCcHH--------H
Confidence 36799999999999999999999998766665444333211000 110 112223333444443321 1
Q ss_pred cHHHHHHHHhcCC---cEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHH
Q 043263 171 PKKQIREYMAKGY---DIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRI 237 (286)
Q Consensus 171 ~~~~i~~~~~~g~---~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl 237 (286)
..+.+.+++.... ..+++|-+ |....-+.+-..+.+++|+|++ ++...+|+..|+.. +.+.+..|+
T Consensus 73 ~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikkR~ 151 (195)
T KOG3079|consen 73 TLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKKRL 151 (195)
T ss_pred HHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence 2223333332222 27888744 4444444443378999999997 88888999877542 577888888
Q ss_pred HHHHHHh----hccCC-CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 238 ATAREEV----QHVKN-FDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 238 ~~~~~~~----~~~~~-~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+..... ++.+. ....-++.++++++++.++.+.+..
T Consensus 152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 8765432 22222 2344567888999999999998864
No 420
>PRK13973 thymidylate kinase; Provisional
Probab=99.12 E-value=6.7e-09 Score=86.99 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc------chhhhheecc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN------ELLEYALVYG 165 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~------~~~~~~~~~~ 165 (286)
|.+|+|-|+.||||||+++.|+..+..-+..+.. ++.|.. .. ..+.++..+... ...+...+.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~-~~~p~~-~~--------~g~~ir~~l~~~~~~~~~~~~~~ll~~a 72 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV-TREPGG-SP--------GAEAIRHVLLSGAAELYGPRMEALLFAA 72 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE-EECCCC-Cc--------hHHHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 8999999999999999999999887533332222 222321 11 112222222110 0111111112
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCH---------------HHHHHHHHH-h--CCCcEEEEEecCCHHHHHHHHHHhcC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDI---------------QGARTLRRI-L--GDSAVFVFLAAESEMALVERLVERKT 227 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~---------------q~v~iaral-~--~~~~~~Illd~~~~~~l~~rl~~r~~ 227 (286)
+......+.+..++..|..++++.-. ..+..+... . ..|+++|+||.+ ++...+|+.+|+.
T Consensus 73 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~-~e~~~~Rl~~R~~ 151 (213)
T PRK13973 73 ARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIP-AEVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhccC
Confidence 21112233456667777766664211 112222211 1 368999999997 7888899987753
Q ss_pred CC---------HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 228 EN---------REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 228 ~t---------~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
.+ .+....+........+. .....++++.+++++++..+|.+++.....
T Consensus 152 ~~~~~~~e~~~~~~~~~~~~~y~~l~~~-~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 152 SDTPDRFEKEDLAFHEKRREAFLQIAAQ-EPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred CCccCchhhchHHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12222222222221110 111245678888999999999999987543
No 421
>PLN02200 adenylate kinase family protein
Probab=99.11 E-value=4e-09 Score=89.45 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
+.+++|+|++||||||+++.|+..++..+++....-|.. +.+.. -....+...+..+..... ...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~----i~~~s---~~~~~i~~~~~~G~~vp~--------e~~ 107 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRRE----IASNS---EHGAMILNTIKEGKIVPS--------EVT 107 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHH----HhccC---hhHHHHHHHHHcCCCCcH--------HHH
Confidence 578999999999999999999987754333322111100 00000 000111111111111110 011
Q ss_pred HHHHHHHHh--cCCcEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q 043263 172 KKQIREYMA--KGYDIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIATAR 241 (286)
Q Consensus 172 ~~~i~~~~~--~g~~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~ 241 (286)
...+.+.+. .+...+++|.+ |+..+...+-..|+.+|+|+.+ .+.+.+|+..|+. .+.+.+..|++...
T Consensus 108 ~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~ 186 (234)
T PLN02200 108 VKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRLKVFN 186 (234)
T ss_pred HHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHHHHHH
Confidence 112222232 23457788754 2322222221257889999997 6778889887632 24567777777655
Q ss_pred HHhh----ccCC-CcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 242 EEVQ----HVKN-FDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 242 ~~~~----~~~~-~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.... +.+. ...+.++.+++++++.+++.+.+....
T Consensus 187 ~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 187 ALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 4422 1222 234667777899999999999988754
No 422
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.11 E-value=6e-11 Score=106.10 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=96.9
Q ss_pred hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee-----CH
Q 043263 72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV-----SK 145 (286)
Q Consensus 72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~-----~~ 145 (286)
++.-+|+. .+.-..+-++..|+++||+|+||-||||.+++|+|.+. |.-|..++.+-... ..
T Consensus 79 e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~------------PNLG~~~~pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK------------PNLGRYEDPPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc------------cCCCCCCCCCCHHHHHHHhhh
Confidence 35556774 45555566666799999999999999999999999875 76666544321110 01
Q ss_pred ----HHHHHHhhc-------cchhhhhe--ecccc---------cCccHH-----HHHHHHhcCCcEEEEeCHHHHHHHH
Q 043263 146 ----EEFLQMVDK-------NELLEYAL--VYGDY---------KGIPKK-----QIREYMAKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 146 ----~~~~~~i~~-------~~~~~~~~--~~~~~---------~~~~~~-----~i~~~~~~g~~~v~~~~~q~v~iar 198 (286)
..|..+... ..+++... +-+.. .+...+ .+...+.+....+++|++||+++|.
T Consensus 147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 111111100 01111100 00000 011111 1222344555668899999999999
Q ss_pred HHhCCCcEEEEEecCCHHHHHHHHH------Hhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 199 RILGDSAVFVFLAAESEMALVERLV------ERK--TENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 199 al~~~~~~~Illd~~~~~~l~~rl~------~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++.++.++++|-.+.|--.+.+|+. +.. +....++.|+++... -.+|.|.+.-
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD------~lsD~vhI~Y 287 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD------YLSDFVHILY 287 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH------HhhheeEEEe
Confidence 9999999999955555444445543 222 235566788888631 3567666554
No 423
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.10 E-value=8.8e-09 Score=80.25 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc--cchhhhheecccccCc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK--NELLEYALVYGDYKGI 170 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~ 170 (286)
.+|.|-|++||||||+++.|++.++...++ . ..-|+.+... ..+.+...+....+.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vs---------a------------G~iFR~~A~e~gmsl~ef~~~AE~~p~i 59 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVS---------A------------GTIFREMARERGMSLEEFSRYAEEDPEI 59 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceee---------c------------cHHHHHHHHHcCCCHHHHHHHHhcCchh
Confidence 368999999999999999999987421111 1 1223333211 1222222222222222
Q ss_pred cHH--HHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH------
Q 043263 171 PKK--QIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATARE------ 242 (286)
Q Consensus 171 ~~~--~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~------ 242 (286)
+.+ .-+..+.+..++++++.+..+ +++ ..+++.|||.+| .++..+|+..|.+.+...+...+..-..
T Consensus 60 D~~iD~rq~e~a~~~nvVlegrLA~W-i~k---~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY 134 (179)
T COG1102 60 DKEIDRRQKELAKEGNVVLEGRLAGW-IVR---EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRY 134 (179)
T ss_pred hHHHHHHHHHHHHcCCeEEhhhhHHH-Hhc---cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 211 111223346678887754222 222 367999999998 8888899999987676655432221110
Q ss_pred ------HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 243 ------EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 243 ------~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
+...+..+|.||-.+.-++++++.-|...++....+
T Consensus 135 ~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 135 KKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred HHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 111235577777545447888888887777776544
No 424
>PRK13808 adenylate kinase; Provisional
Probab=99.10 E-value=3.1e-09 Score=93.68 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC--HHHHHHHhhccchhhhheecccccCcc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS--KEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
.|.|+||+||||||+++.|+..|...++++.+.-|. .+...+ ...+...+..+.++.+. +.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~---------~i~~~s~~g~~~~~~~~~G~lVPde--------iv 64 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRA---------AVAAGTPVGLKAKDIMASGGLVPDE--------VV 64 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHH---------HhhcCChhhHHHHHHHHcCCCCCHH--------HH
Confidence 388999999999999999998876444332221110 000000 11112222222222111 11
Q ss_pred HHHHHHHHh---cCCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHh------------cCCC
Q 043263 172 KKQIREYMA---KGYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVER------------KTEN 229 (286)
Q Consensus 172 ~~~i~~~~~---~g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r------------~~~t 229 (286)
...+.+.+. .....+++|-+..+..+..+ + ..|+++|+||.+ ++.+++|+..| ...+
T Consensus 65 ~~li~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~R~DD~ 143 (333)
T PRK13808 65 VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEVRADDT 143 (333)
T ss_pred HHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCccCCCCC
Confidence 111222221 23457788866444444332 2 268999999997 78888998765 1225
Q ss_pred HHHHHHHHHHHHHHh----hccCCC-cEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 230 REELLVRIATAREEV----QHVKNF-DYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 230 ~~~i~~rl~~~~~~~----~~~~~~-d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.+.+.+|+..+.... ++.... -.+.|+.++.+++++++|..+|....
T Consensus 144 ~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 144 PEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 778888887655442 222222 24556666789999999999998753
No 425
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.10 E-value=2.3e-09 Score=87.54 Aligned_cols=163 Identities=20% Similarity=0.326 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
+|.|+|++||||||+++.|+..++..+++..+.-|.... .+.+ ....+...+..+..... ....+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~---~~~~----~~~~~~~~~~~g~~~~~--------~~~~~ 65 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIK---SGSE----NGELIESMIKNGKIVPS--------EVTVK 65 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHh---cCCh----HHHHHHHHHHCCCcCCH--------HHHHH
Confidence 478999999999999999998875433332211111100 0000 00111111111111110 01112
Q ss_pred HHHHHHhc--CCcEEEEeCHHHHHHH---HHHh---CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHH
Q 043263 174 QIREYMAK--GYDIVLRVDIQGARTL---RRIL---GDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIAT 239 (286)
Q Consensus 174 ~i~~~~~~--g~~~v~~~~~q~v~ia---ral~---~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~ 239 (286)
.+.+.+.. +..++++|-+.....+ ..++ ..|+.+|+|+.+ .+.+.+|+..|+. .+.+.+..|+..
T Consensus 66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~ 144 (183)
T TIGR01359 66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRT 144 (183)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHH
Confidence 23333322 4567888743222111 1222 267889999997 7788899988753 246677777765
Q ss_pred HHHH----hhccCCCc-EEEECCCCCHHHHHHHHHHHH
Q 043263 240 AREE----VQHVKNFD-YVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 240 ~~~~----~~~~~~~d-~viv~~~G~i~~~~~~l~~~i 272 (286)
.... .++....+ .+.++.+++++++.+++.+++
T Consensus 145 y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 145 YNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4432 22223233 456777889999999888765
No 426
>PRK14527 adenylate kinase; Provisional
Probab=99.09 E-value=5.6e-09 Score=85.94 Aligned_cols=164 Identities=19% Similarity=0.261 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC--HHHHHHHhhccchhhhheeccccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS--KEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
+++++.++||+||||||+++.|+..+...+.+ .|++-...+...+ .......+..+.....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is---------~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~-------- 67 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS---------TGDILRDHVARGTELGQRAKPIMEAGDLVPD-------- 67 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC---------ccHHHHHHHhcCcHHHHHHHHHHHcCCCCcH--------
Confidence 48999999999999999999999766422221 1110000000000 0001111111111110
Q ss_pred CccHHHHHHHHhc--CCcEEEEeCHHHH---HHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHH
Q 043263 169 GIPKKQIREYMAK--GYDIVLRVDIQGA---RTLRRIL----GDSAVFVFLAAESEMALVERLVERKT------ENREEL 233 (286)
Q Consensus 169 ~~~~~~i~~~~~~--g~~~v~~~~~q~v---~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i 233 (286)
......+.+.+.. +...+++|-+... ..+..++ ..+..+|+||.+ .+.+.+|+.+|.. .+.+.+
T Consensus 68 ~~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~ 146 (191)
T PRK14527 68 ELILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETV 146 (191)
T ss_pred HHHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHH
Confidence 0111223333332 3457777643111 2122221 245567889997 7888899987641 256778
Q ss_pred HHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 234 LVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 234 ~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
..|+..+......+ ...-.+.++.++.++++++++...+
T Consensus 147 ~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 147 RRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 88888776544321 1222455677789999999998765
No 427
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.09 E-value=2.3e-11 Score=101.73 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=43.7
Q ss_pred EEEEeCHHHHHHHHHHhC----CCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 185 IVLRVDIQGARTLRRILG----DSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~----~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
.+..+++|++.+++++.. .|+++++ +|+.+...+.+.+.+... .+...++|+... ...||+|
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~-------~~~~d~v 199 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNM-------FELADRL 199 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHH-------HHhCCEE
Confidence 355678899999998852 3566665 666656666666665432 245556776443 3689999
Q ss_pred EECC
Q 043263 254 VVNA 257 (286)
Q Consensus 254 iv~~ 257 (286)
+++.
T Consensus 200 ~~~~ 203 (212)
T cd03274 200 VGIY 203 (212)
T ss_pred EEEE
Confidence 9865
No 428
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.08 E-value=6.8e-12 Score=103.77 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=28.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++++.+.+ | +++|+|||||||||++++|+++++
T Consensus 14 ~~~~l~~~~-g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 14 DKTTIPFPP-G-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CCeeeecCC-C-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 445566665 8 999999999999999999998864
No 429
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.07 E-value=8.6e-12 Score=98.29 Aligned_cols=145 Identities=13% Similarity=0.171 Sum_probs=80.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---h-hc
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---V-DK 154 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i-~~ 154 (286)
|-..+..+.. |+++-++|||||||||++..++|+. |-+|+ ++|.+.......++... + ++
T Consensus 15 L~plS~qv~a-Ge~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~eLArhRAYLsQq 80 (248)
T COG4138 15 LGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATELARHRAYLSQQ 80 (248)
T ss_pred cccccccccc-ceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhHHHHHHHHHhhc
Confidence 5555666666 9999999999999999999999986 55666 67887655444444332 1 22
Q ss_pred c--ch----hhhheecccccCccHHHHHH---------HHhcCCcEEEEeCHHHHHHHHHHhC-----CCc-EEEEEecC
Q 043263 155 N--EL----LEYALVYGDYKGIPKKQIRE---------YMAKGYDIVLRVDIQGARTLRRILG-----DSA-VFVFLAAE 213 (286)
Q Consensus 155 ~--~~----~~~~~~~~~~~~~~~~~i~~---------~~~~g~~~v~~~~~q~v~iaral~~-----~~~-~~Illd~~ 213 (286)
. .| +.+...+... ......+.+ .+.+...-+.+|+.||+.+|...+. +|. -++++|+|
T Consensus 81 q~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 81 QTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred cCCcchhhhhhhhhhcCch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 1 12 1111111000 011112222 1333445677899999988854431 232 23334443
Q ss_pred C------HHHHHHHHHHh---cCCCHHHHHHHHHHH
Q 043263 214 S------EMALVERLVER---KTENREELLVRIATA 240 (286)
Q Consensus 214 ~------~~~l~~rl~~r---~~~t~~~i~~rl~~~ 240 (286)
. .+....|+..+ .+.++++-.|++++.
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT 195 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT 195 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH
Confidence 2 33344454432 333555567777765
No 430
>PRK13946 shikimate kinase; Provisional
Probab=99.07 E-value=5.7e-09 Score=85.42 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--ccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YKG 169 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 169 (286)
...|+|+|++||||||+++.|+..++ .++.+.+.. ..... ...+.+....++. ...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg--------------------~~~id~D~~-~~~~~-g~~~~e~~~~~ge~~~~~ 67 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG--------------------LPFLDADTE-IERAA-RMTIAEIFAAYGEPEFRD 67 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--------------------CCeECcCHH-HHHHh-CCCHHHHHHHHCHHHHHH
Confidence 46799999999999999999998763 111111110 11110 0001000001111 111
Q ss_pred ccHHHHHHHHhcCCcEEEEeC-HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE 242 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~-~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~ 242 (286)
...+.+...+..+..++..+. .-...-.+..+....+.|||+++ .+.+.+|+..+.+. +......++...+.
T Consensus 68 ~e~~~l~~l~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~ 146 (184)
T PRK13946 68 LERRVIARLLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEERY 146 (184)
T ss_pred HHHHHHHHHHhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 223344455555544454321 10112223333345788999997 78888999876542 22222222222222
Q ss_pred HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 243 EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 243 ~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.. ...+|.++..++..++++++.|.+.++....+
T Consensus 147 ~~--y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 147 PV--YAEADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred HH--HHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 21 23489888778779999999999999876543
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.05 E-value=1.3e-08 Score=85.11 Aligned_cols=162 Identities=20% Similarity=0.279 Sum_probs=91.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ 174 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
|.|+||+||||||+++.|+..+...++++.+.-|.. +... ......+...+..+..+... +..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~----~~~~---~~~~~~~~~~~~~g~~vp~~--------~~~~l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE----IKAG---TPLGKKAKEYMEKGELVPDE--------IVNQL 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh----hccc---cHHHHHHHHHHhCCCCCCHH--------HHHHH
Confidence 789999999999999999987653333322111110 0000 00001111222222221110 11222
Q ss_pred HHHHHhc----CCcEEEEeCHHHHHHH---HHHhC-CCcEEEEEecCCHHHHHHHHHHhc--------------------
Q 043263 175 IREYMAK----GYDIVLRVDIQGARTL---RRILG-DSAVFVFLAAESEMALVERLVERK-------------------- 226 (286)
Q Consensus 175 i~~~~~~----g~~~v~~~~~q~v~ia---ral~~-~~~~~Illd~~~~~~l~~rl~~r~-------------------- 226 (286)
+.+.+.+ +...+++|-+.....+ ...+. .+..+|+|+.+ ++.+.+|+..|.
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~ 145 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPG 145 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCC
Confidence 3333433 4567888754333333 33344 57889999997 788888888763
Q ss_pred -------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 227 -------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 227 -------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
..+.+.+.+|+..+......+ . ..-.+.++.+++++++.++|.+.+
T Consensus 146 ~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 146 CDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 125678899998776543221 2 223555677779999999998875
No 432
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.04 E-value=1.9e-10 Score=98.35 Aligned_cols=68 Identities=10% Similarity=-0.051 Sum_probs=43.5
Q ss_pred CcEEEEeCHHHHHHHHHHhC----CCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 183 YDIVLRVDIQGARTLRRILG----DSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~----~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
...+++|++|++.+|++++. .|+++|+ +|+.+...+.+.|.+.. +.+...++|+... ...||
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~-------~~~~d 228 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL-------LEVAD 228 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HhhCC
Confidence 34567789999999999962 3556665 55555666666666542 2233444565433 46899
Q ss_pred EEEECC
Q 043263 252 YVVVNA 257 (286)
Q Consensus 252 ~viv~~ 257 (286)
+++++.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 888764
No 433
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.8e-11 Score=108.74 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=88.1
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCccee
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYF 141 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~~~ 141 (286)
...|.+.+.+..||+ .|.+-++.+.. |..+||+|+||+|||||+++|+. ....+ |.+-++.|.+..
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~-GrRYGLvGrNG~GKsTLLRaia~~~v~~f----------~veqE~~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSR-GRRYGLVGRNGIGKSTLLRAIANGQVSGF----------HVEQEVRGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeec-ccccceeCCCCCcHHHHHHHHHhcCcCcc----------CchhheeccchH
Confidence 345777888899987 67888888887 99999999999999999999986 11111 222122222211
Q ss_pred ee----CHH-HHHHHhhcc-chhhh---heecc-cc--cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263 142 FV----SKE-EFLQMVDKN-ELLEY---ALVYG-DY--KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209 (286)
Q Consensus 142 ~~----~~~-~~~~~i~~~-~~~~~---~~~~~-~~--~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il 209 (286)
-. ..+ ....++.++ .+... ..++. .+ .+++.+.. .+--..++||=+-++++|||++.+|++++|
T Consensus 147 ~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 00 000 001111111 00000 00111 11 12333322 222345777877899999999988887777
Q ss_pred ------EecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263 210 ------LAAESEMALVERLVERKTENREELLV 235 (286)
Q Consensus 210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~ 235 (286)
||..+..-+..-|.... .|..++.|
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~-~T~liVSH 253 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWK-ITSLIVSH 253 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCC-ceEEEEec
Confidence 66665666666666654 24444444
No 434
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.03 E-value=8.7e-11 Score=107.02 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=46.5
Q ss_pred hhhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 64 VNKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 64 ~~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
....+.+.|+++.|.+ .+.++.+.+.+ |+.+||+|+|||||||+++++.+...
T Consensus 72 ~s~dvk~~sls~s~~g~~l~kd~~~El~~-g~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGVELIKDVTLELNR-GRRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred ccccceeeeeeeccCCceeeeeeeEEecC-CceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 3456888999999987 68899999998 99999999999999999999987643
No 435
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.03 E-value=8.1e-09 Score=87.48 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=38.8
Q ss_pred cEEEEEecCCHHHHHHHHHHh---cCCCHHHHHHHHHH-HHH----HhhccCCCcEEEECC
Q 043263 205 AVFVFLAAESEMALVERLVER---KTENREELLVRIAT-ARE----EVQHVKNFDYVVVNA 257 (286)
Q Consensus 205 ~~~Illd~~~~~~l~~rl~~r---~~~t~~~i~~rl~~-~~~----~~~~~~~~d~viv~~ 257 (286)
+.+||++++ .+..++|+..| .+.+.+.+.+++.. +++ ..+....||.||.++
T Consensus 162 D~vi~v~~~-~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 162 DFTIFLDAP-AEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CEEEEEECC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 799999997 77777888877 35588888888864 333 234567899998766
No 436
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.8e-09 Score=88.24 Aligned_cols=176 Identities=21% Similarity=0.288 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCcceeeeCHHHHHHHhhccch--hhhh-eeccc-
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKDYFFVSKEEFLQMVDKNEL--LEYA-LVYGD- 166 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~~~~~~~~~~~~~i~~~~~--~~~~-~~~~~- 166 (286)
..+|+|-||+||||||+++.|+..+...++..+.+.|...-.- -.+.++. +.+.+..+.....+ .... .+.+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~--d~~~~~~l~~~~~i~f~~~~~v~l~ge 81 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLD--DEDALVALAKELDISFVNDDRVFLNGE 81 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCc--cHHHHHHHHHhCCceecccceEEECCc
Confidence 3789999999999999999999988755554444333211000 0122211 22222222211111 0000 00000
Q ss_pred -----c------------------cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH
Q 043263 167 -----Y------------------KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLV 223 (286)
Q Consensus 167 -----~------------------~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~ 223 (286)
+ +....+..+.....+..++++|- .+.-..+++.++.|||++..++.-.+|..
T Consensus 82 dvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGR----DiGTvV~PdA~lKiFLtAS~e~RA~RR~~ 157 (222)
T COG0283 82 DVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGR----DIGTVVFPDAELKIFLTASPEERAERRYK 157 (222)
T ss_pred hhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecC----CCcceECCCCCeEEEEeCCHHHHHHHHHH
Confidence 0 00000111122333466777763 23334578999999999998888888888
Q ss_pred HhcCCC----HHHHHHHHHHHH-HHh----hccC-CCcEEEECCCC-CHHHHHHHHHHHHH
Q 043263 224 ERKTEN----REELLVRIATAR-EEV----QHVK-NFDYVVVNAEG-KLDSAVKLVESVID 273 (286)
Q Consensus 224 ~r~~~t----~~~i~~rl~~~~-~~~----~~~~-~~d~viv~~~G-~i~~~~~~l~~~i~ 273 (286)
+..... .+.+...+..-- .+. .+++ ..|-++++.++ +++|+++++.++++
T Consensus 158 q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 158 QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 753322 244433332211 111 1223 35666666544 89999999999887
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.02 E-value=1.1e-08 Score=85.82 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=91.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|.|+|++||||||+++.|+..+...+.+..+.-|.. +.+. ......+...+..+..+... ...+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~----~~~~---~~~~~~~~~~~~~g~~~p~~--------~~~~ 66 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAA----VKAG---TELGKEAKSYMDAGELVPDE--------IVIG 66 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHH----Hhcc---chHHHHHHHHHHcCCcCCHH--------HHHH
Confidence 4899999999999999999988764443322111100 0000 00001111222222111110 1122
Q ss_pred HHHHHHhc---CCcEEEEeCHHHHHHHHHH------h-CCCcEEEEEecCCHHHHHHHHHHhc-----------------
Q 043263 174 QIREYMAK---GYDIVLRVDIQGARTLRRI------L-GDSAVFVFLAAESEMALVERLVERK----------------- 226 (286)
Q Consensus 174 ~i~~~~~~---g~~~v~~~~~q~v~iaral------~-~~~~~~Illd~~~~~~l~~rl~~r~----------------- 226 (286)
.+.+.+.+ +...+++|-+.....+..+ . ..+..+|+|+++ .+.+.+|+..|.
T Consensus 67 ~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 67 LVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPK 145 (215)
T ss_pred HHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCC
Confidence 23333322 2367788744322222222 1 245688889987 778888888663
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 ----------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 ----------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.+.+|+..+......+ + ..-.+.++.+++++++++++.+++.+
T Consensus 146 ~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 146 VEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 236788899998766543222 1 12255678888999999999988764
No 438
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.02 E-value=7.4e-11 Score=95.36 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=101.7
Q ss_pred hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
+..|+++++.|.|.. .+.+.++++|. |....++|.||||||||+++|+|..-.-...+....|.|...+ ...-+
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~-gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPA-GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCC-CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 346889999999976 68899999998 9999999999999999999999864322333333333332211 11111
Q ss_pred eeeeCHH------HHHHHhhccch-hhhheecccccCcc---HHHHHHHHh----cCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 140 YFFVSKE------EFLQMVDKNEL-LEYALVYGDYKGIP---KKQIREYMA----KGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 140 ~~~~~~~------~~~~~i~~~~~-~~~~~~~~~~~~~~---~~~i~~~~~----~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
..++-.+ .-+...-|+.+ .++ .+++. .+.. .+.+...+. =....+.+||+.|+.+...++ .|.
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~-mifgV-~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL-~Pf 166 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGV-GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL-KPF 166 (291)
T ss_pred eeEecccccccccccccccccccccHHH-HHhhc-cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc-cce
Confidence 1111100 00011111122 111 11111 0111 111112211 112346689999999999888 777
Q ss_pred EEEEEecCC-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 206 VFVFLAAES-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 206 ~~Illd~~~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
.+++||.-+ ...+.+-+++. .+.|+.-.+|..+-. .....+++.+.+|++.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGL------e~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGL------ETWPTHLVYIKSGKLV 227 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccch------hhcchhEEEecCCeee
Confidence 777755543 22333334321 222555556665542 2456677777777653
No 439
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.01 E-value=1.3e-08 Score=82.16 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=45.3
Q ss_pred HhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 200 ILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 200 l~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.+.....+|+|+++ .+.+.+|+.++... ......+.+...... .+...+|.++..++.+++++.+.|.+.++
T Consensus 93 ~l~~~~~~v~l~~~-~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~dl~idt~~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 93 LLRERGTVVYLDAS-FEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDP-LYEEVADITVETDGRSPEEVVNEILEKLE 170 (175)
T ss_pred HHHhCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH-HHHhhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 33345688899987 77788998765431 111111212111111 11245898887777899999999999887
Q ss_pred HH
Q 043263 274 AE 275 (286)
Q Consensus 274 ~~ 275 (286)
.+
T Consensus 171 ~~ 172 (175)
T PRK00131 171 AA 172 (175)
T ss_pred hh
Confidence 53
No 440
>PRK08233 hypothetical protein; Provisional
Probab=99.01 E-value=2.6e-08 Score=80.99 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+|+|.|++||||||+++.|++.++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 68999999999999999999998764
No 441
>PRK14532 adenylate kinase; Provisional
Probab=99.00 E-value=8.9e-09 Score=84.48 Aligned_cols=164 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|.|+|++||||||+++.|+..++..++++.+.-|... -.|.+ ....+...+..+..+... +..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~---~~~~~----~~~~~~~~~~~g~~~~~~--------~~~~ 66 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAI---ASGSE----LGQRVKGIMDRGELVSDE--------IVIA 66 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHH---HcCCH----HHHHHHHHHHCCCccCHH--------HHHH
Confidence 38899999999999999999877533333221111100 00000 001112222222111110 1111
Q ss_pred HHHHHH---hcCCcEEEEeCHHHHHHH---HHHh----CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHH
Q 043263 174 QIREYM---AKGYDIVLRVDIQGARTL---RRIL----GDSAVFVFLAAESEMALVERLVERKT------ENREELLVRI 237 (286)
Q Consensus 174 ~i~~~~---~~g~~~v~~~~~q~v~ia---ral~----~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl 237 (286)
.+.+.+ ..+..+++++-+.....+ ..++ ..|+.+|+|+.+ .+.+.+|+..|.. .+.+.+..|+
T Consensus 67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl 145 (188)
T PRK14532 67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRL 145 (188)
T ss_pred HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHH
Confidence 222222 234567777743221111 1111 256689999997 7888899886631 2456677788
Q ss_pred HHHHHHhh----ccCCCc-EEEECCCCCHHHHHHHHHHHHH
Q 043263 238 ATAREEVQ----HVKNFD-YVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 238 ~~~~~~~~----~~~~~d-~viv~~~G~i~~~~~~l~~~i~ 273 (286)
........ .....+ .+.++.+++++++.++|.+.+.
T Consensus 146 ~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 146 DAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 76654432 122233 3445555789999999998875
No 442
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.99 E-value=2.6e-08 Score=80.57 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 199 RILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 199 al~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.++.....+|||+.+ .+.+.+|+..+... ........+...+.. .+...||.+|..++.+++++.++|.+.+
T Consensus 92 ~~l~~~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~-~Y~~~Ad~~idt~~~s~~ei~~~i~~~l 169 (172)
T PRK05057 92 NRLSARGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANERNP-LYEEIADVTIRTDDQSAKVVANQIIHML 169 (172)
T ss_pred HHHHhCCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhhCCEEEECCCCCHHHHHHHHHHHH
Confidence 444455789999997 77888998754221 112222222222211 1235699888777678999999998877
Q ss_pred HH
Q 043263 273 DA 274 (286)
Q Consensus 273 ~~ 274 (286)
+.
T Consensus 170 ~~ 171 (172)
T PRK05057 170 ES 171 (172)
T ss_pred hh
Confidence 53
No 443
>PLN02674 adenylate kinase
Probab=98.99 E-value=9e-09 Score=87.30 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
...+.|+||+||||+|+++.|+..+...+.++.+.-|.. ..+.- ....+...+..+.++....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~--------~g~~i~~~~~~G~lvpd~i-------- 94 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDL-------- 94 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccCh--------hhHHHHHHHHcCCccCHHH--------
Confidence 356899999999999999999998764443332211100 00000 0112222333333332211
Q ss_pred cHHHHHHHHhc---CCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHhc--------------
Q 043263 171 PKKQIREYMAK---GYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVERK-------------- 226 (286)
Q Consensus 171 ~~~~i~~~~~~---g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r~-------------- 226 (286)
....+.+.+.+ +...+++|-+.-+..|..+ + ..+..+|+|+.+ .+.+.+|+..|.
T Consensus 95 v~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~ 173 (244)
T PLN02674 95 VVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFA 173 (244)
T ss_pred HHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccC
Confidence 12223333322 3457788755334444322 1 257888999986 788889987651
Q ss_pred -------------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 227 -------------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 227 -------------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
..+.+.+.+|+..+......+ + ..-.+.++.++.+++++++|..++
T Consensus 174 pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 174 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 225788899998776543222 1 223455677779999999998765
No 444
>PRK02496 adk adenylate kinase; Provisional
Probab=98.98 E-value=1.5e-08 Score=82.87 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
+.++|+||+||||||+++.|+..+...+.+....-+.... .+.. ........+..+..... ....
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~---~~~~----~g~~~~~~~~~g~~~~~--------~~~~ 66 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIK---EQTP----LGIKAQGYMDKGELVPD--------QLVL 66 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHh---ccCh----hHHHHHHHHHCCCccCH--------HHHH
Confidence 4589999999999999999998764222221111100000 0000 00001111111111110 0111
Q ss_pred HHHHHHHh---cCCcEEEEeCHHH---HHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 043263 173 KQIREYMA---KGYDIVLRVDIQG---ARTLRRIL----GDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATA 240 (286)
Q Consensus 173 ~~i~~~~~---~g~~~v~~~~~q~---v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~ 240 (286)
..+.+.+. .....+++|-+.. ...+..++ ..+..+|+|+.+ .+.+.+|+..|++. +.+.+.+|++..
T Consensus 67 ~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~y 145 (184)
T PRK02496 67 DLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEVY 145 (184)
T ss_pred HHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 12222222 2235677774311 22222221 357888999997 88888999987542 567777888776
Q ss_pred HHHhhc----cC-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 241 REEVQH----VK-NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 241 ~~~~~~----~~-~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
...... .+ ....+.++.+++++++.+++...+
T Consensus 146 ~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 146 REQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 543221 11 123567788889999999998776
No 445
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.98 E-value=1.1e-08 Score=84.35 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
|.+|+|.|+.||||||++++|...+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998765
No 446
>PRK14526 adenylate kinase; Provisional
Probab=98.97 E-value=2e-08 Score=83.80 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.++|+||+||||||++++|++.+...+.+....-|... -.+.. ....+...+..+.++.... ..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~---~~~t~----~g~~i~~~~~~g~lvpd~~--------~~~ 66 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENI---LNSTP----LGKEIKQIVENGQLVPDSI--------TIK 66 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhc---ccCCh----hhHHHHHHHHcCccCChHH--------HHH
Confidence 37899999999999999999876533332221111000 00000 0112233333333322111 112
Q ss_pred HHHHHHh---cCCcEEEEeCHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhc----------------------
Q 043263 174 QIREYMA---KGYDIVLRVDIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERK---------------------- 226 (286)
Q Consensus 174 ~i~~~~~---~g~~~v~~~~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~---------------------- 226 (286)
.+.+.+. .....+++|-+..+..|.++-. ....+|.++.+ .+.+.+|+..|.
T Consensus 67 lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~ 145 (211)
T PRK14526 67 IVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGIC 145 (211)
T ss_pred HHHHHHhcccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcC
Confidence 2233332 2345777886544444444321 22355667875 788889987642
Q ss_pred -----------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 -----------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 -----------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.+.+|+..+..+..++ . ..-.+.++.+++++++.++|.+++++
T Consensus 146 ~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 146 DVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 235788899998776543222 2 22345667778999999999988865
No 447
>PLN02459 probable adenylate kinase
Probab=98.96 E-value=1.8e-08 Score=86.01 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=98.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+..+.|+||+||||||+++.|+..+...+.++...-|.. ..+ .+ ....+...+.++.++.....
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~----lg~~i~~~~~~G~lVPdeiv------- 93 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP----LGAQLKEIVNQGKLVPDEII------- 93 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch----hHHHHHHHHHcCCccCHHHH-------
Confidence 356888999999999999999987754444333221110 000 00 01122333344444332211
Q ss_pred cHHHHHHHHh-----cCCcEEEEeCHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhc-----------------
Q 043263 171 PKKQIREYMA-----KGYDIVLRVDIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERK----------------- 226 (286)
Q Consensus 171 ~~~~i~~~~~-----~g~~~v~~~~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~----------------- 226 (286)
...+.+.+. .....+++|-+.-+..|..+- ..+..+|+|+.+ .+.+++|+..|.
T Consensus 94 -~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~ 171 (261)
T PLN02459 94 -FSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLK 171 (261)
T ss_pred -HHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCccccccccccc
Confidence 122223332 234577888664445444432 256888999987 788888887542
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 ---------------------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 ---------------------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.+..|+..+......+ ...-.+.++.++.++++.++|.+++..
T Consensus 172 ~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 172 GEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred cccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 225677889998776543222 223345567778999999999999876
Q ss_pred HH
Q 043263 275 EK 276 (286)
Q Consensus 275 ~~ 276 (286)
..
T Consensus 252 ~~ 253 (261)
T PLN02459 252 DD 253 (261)
T ss_pred hh
Confidence 54
No 448
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.96 E-value=7.6e-09 Score=82.34 Aligned_cols=156 Identities=17% Similarity=0.262 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--ccCc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YKGI 170 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~ 170 (286)
..|+|+|+.||||||+.+.|+..+. +.|++.+..-.........+-...+|. ....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~----------------------~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~ 60 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN----------------------LPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRL 60 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC----------------------CCcccchHHHHHHHCcCHHHHHHHHhHHHHHHH
Confidence 4589999999999999999998763 122222221111111111111111111 1112
Q ss_pred cHHHHHHHHhcCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc-C-----CCHHHHHHHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK-T-----ENREELLVRIATAREE 243 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~-~-----~t~~~i~~rl~~~~~~ 243 (286)
-.+.+.+.+..+..++. ||..---.-.|..+.+...+|||+++ .+.+.+|+.... + .+. ...+...+.+
T Consensus 61 E~~vl~~l~~~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~---~~~l~~L~~~ 136 (172)
T COG0703 61 ETEVLKELLEEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDP---REELEELLEE 136 (172)
T ss_pred HHHHHHHHhhcCCeEEECCCccccCHHHHHHHHhCCeEEEEeCC-HHHHHHHhccccCCCcccCCCh---HHHHHHHHHH
Confidence 23345555555533333 33332224456666677799999997 889999998322 1 122 1111221111
Q ss_pred --hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 244 --VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 244 --~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..+...+|+++-.++.+ ++++.++.+.+...
T Consensus 137 R~~~Y~e~a~~~~~~~~~~-~~v~~~i~~~l~~~ 169 (172)
T COG0703 137 RQPLYREVADFIIDTDDRS-EEVVEEILEALEGS 169 (172)
T ss_pred HHHHHHHhCcEEecCCCCc-HHHHHHHHHHHHHh
Confidence 11135577777555444 88888888877654
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.96 E-value=3.9e-08 Score=82.01 Aligned_cols=30 Identities=43% Similarity=0.597 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++++|.+++|+|+|||||||+++.|++++.
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455699999999999999999999999875
No 450
>PRK04182 cytidylate kinase; Provisional
Probab=98.96 E-value=3.3e-08 Score=80.24 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH---H-Hh--------hccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAR---E-EV--------QHVKNFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~---~-~~--------~~~~~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
+.+.|+|+++ .+.+.+|+..+.+.+.......+.... . .. .....+|.+|..++-+++++++.|.+.
T Consensus 92 ~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~ 170 (180)
T PRK04182 92 ADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTA 170 (180)
T ss_pred CCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHH
Confidence 5788999997 788889998876555444322221111 0 00 112568877766666899999999998
Q ss_pred HHHHH
Q 043263 272 IDAEK 276 (286)
Q Consensus 272 i~~~~ 276 (286)
+....
T Consensus 171 ~~~~~ 175 (180)
T PRK04182 171 IDKLL 175 (180)
T ss_pred HHHHh
Confidence 87643
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.96 E-value=8.3e-08 Score=75.83 Aligned_cols=148 Identities=23% Similarity=0.335 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
+.|+|+|.+|+||||+++.|.. + |.++..++ + ++....+.....-....+-++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~-l--------------------g~~~i~l~--e---l~~e~~~~~~~de~r~s~~vD~ 54 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRE-L--------------------GYKVIELN--E---LAKENGLYTEYDELRKSVIVDV 54 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHH-h--------------------CCceeeHH--H---HHHhcCCeeccCCccceEEeeH
Confidence 3689999999999999999993 3 23332211 1 1111111110000000112333
Q ss_pred HHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hhc
Q 043263 173 KQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE---VQH 246 (286)
Q Consensus 173 ~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~---~~~ 246 (286)
+.+...++ .....+++... ..+++.++++|+|-++ ...+.+||+.|+. +.+.|..-+....-+ .+.
T Consensus 55 d~~~~~le~~~~~~~~Ivd~H~------~hl~~~~dlVvVLR~~-p~~L~~RLk~RGy-~~eKI~ENveAEi~~vi~~EA 126 (180)
T COG1936 55 DKLRKRLEELLREGSGIVDSHL------SHLLPDCDLVVVLRAD-PEVLYERLKGRGY-SEEKILENVEAEILDVILIEA 126 (180)
T ss_pred HHHHHHHHHHhccCCeEeechh------hhcCCCCCEEEEEcCC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 34566776653 1344457889999987 7899999999976 666665444432211 122
Q ss_pred cCCCcEEE--ECCCCCHHHHHHHHHHHHHH
Q 043263 247 VKNFDYVV--VNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 247 ~~~~d~vi--v~~~G~i~~~~~~l~~~i~~ 274 (286)
...++.++ -..+.+++++++++..++.+
T Consensus 127 ~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 127 VERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 23334443 34556899999999999985
No 452
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=9.2e-08 Score=73.95 Aligned_cols=158 Identities=25% Similarity=0.329 Sum_probs=90.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
..++.++|++||||||+.++|...+. ---++|.|++ +++..+.+ .++.-+.+....+++..+.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~--------------~~F~dgDd~H--p~~NveKM-~~GipLnD~DR~pWL~~i~ 74 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG--------------LKFIDGDDLH--PPANVEKM-TQGIPLNDDDRWPWLKKIA 74 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC--------------CcccccccCC--CHHHHHHH-hcCCCCCcccccHHHHHHH
Confidence 45899999999999999999998763 1115677765 44444444 3333333333333332222
Q ss_pred HHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhC--------CCc-EEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHH
Q 043263 172 KKQIREYMAKGYDIVLRVD---IQGARTLRRILG--------DSA-VFVFLAAESEMALVERLVERKTE--NREELLVRI 237 (286)
Q Consensus 172 ~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~--------~~~-~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl 237 (286)
......+..|..+++-+. ++.-.|+|.-+. +.. .+|+|.. +.+++.+|+.+|.+. ....+..++
T Consensus 75 -~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf 152 (191)
T KOG3354|consen 75 -VELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQF 152 (191)
T ss_pred -HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHH
Confidence 223334456777777553 355566665321 122 3344665 799999999998663 555555544
Q ss_pred HHHHHHhhccCCCc---EEEECCC-CCHHHHHHHHHHHHH
Q 043263 238 ATAREEVQHVKNFD---YVVVNAE-GKLDSAVKLVESVID 273 (286)
Q Consensus 238 ~~~~~~~~~~~~~d---~viv~~~-G~i~~~~~~l~~~i~ 273 (286)
++ .+ ...|| .|-+.-+ -.+++.++.|.+.+.
T Consensus 153 ~~----LE-~p~~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 153 AT----LE-APDADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred Hh----cc-CCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 44 22 22333 3333222 467777777766553
No 453
>PRK13949 shikimate kinase; Provisional
Probab=98.95 E-value=2e-08 Score=80.95 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..|+|+|++||||||+++.|++.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999998864
No 454
>PRK13948 shikimate kinase; Provisional
Probab=98.95 E-value=1.4e-08 Score=82.71 Aligned_cols=163 Identities=16% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--c
Q 043263 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--Y 167 (286)
Q Consensus 90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~ 167 (286)
+.+..|+|+|..||||||+.+.|+..+. .++.+.+. .+.... .....+....++. .
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg--------------------~~~iD~D~-~ie~~~-g~si~~if~~~Ge~~f 65 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM--------------------LHFIDTDR-YIERVT-GKSIPEIFRHLGEAYF 65 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC--------------------CCEEECCH-HHHHHH-hCCHHHHHHHhCHHHH
Confidence 3467899999999999999999998763 22222221 011110 0000010011111 1
Q ss_pred cCccHHHHHHHHhcCCcEEE-EeC-HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 043263 168 KGIPKKQIREYMAKGYDIVL-RVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELLVRIATAREE 243 (286)
Q Consensus 168 ~~~~~~~i~~~~~~g~~~v~-~~~-~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~~~ 243 (286)
.....+.+.+.+..+..++. |+. ... ...+..+.+...+|||+++ .+.+.+|+....+ ........++.....+
T Consensus 66 R~~E~~~l~~l~~~~~~VIa~GgG~v~~-~~n~~~l~~~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~ 143 (182)
T PRK13948 66 RRCEAEVVRRLTRLDYAVISLGGGTFMH-EENRRKLLSRGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLNE 143 (182)
T ss_pred HHHHHHHHHHHHhcCCeEEECCCcEEcC-HHHHHHHHcCCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHHH
Confidence 11112233344433333343 111 100 1112223345678899976 8888899853321 0100011223322222
Q ss_pred hh-ccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 244 VQ-HVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 244 ~~-~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.. ....||.+|..++.+++++.++|.+.+....
T Consensus 144 R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 144 REPVYRQATIHVSTDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred HHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 11 1245898887777789999999988887643
No 455
>PRK13974 thymidylate kinase; Provisional
Probab=98.95 E-value=6.1e-08 Score=81.13 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceee----eeecccCCCCCCcCCcceeeeCHHHHHHHhhcc--c-----hhhh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFV----VTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN--E-----LLEY 160 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~----i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~--~-----~~~~ 160 (286)
|.+|+|.|+.||||||+++.|++.++.-+.. -...++.|. |.. ..+.++..+... . ....
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~--------~g~~ir~~l~~~~~~~~~~~~~~~ 73 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTL--------LGKSLRELLLDTSKDNSPSPLAEL 73 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCc--------hHHHHHHHHcCCCcccCCCHHHHH
Confidence 8999999999999999999999887421110 001111221 111 112223332111 0 0111
Q ss_pred heecccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHH
Q 043263 161 ALVYGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL---GDSAVFVFLAAESEMALVERL 222 (286)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl 222 (286)
..+..+.+....+.+...+..|..++.|- +...+..+..+. ..|+++|+||.+ .+.+.+|+
T Consensus 74 llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~-~~~~~~R~ 152 (212)
T PRK13974 74 LLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRRR 152 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHH
Confidence 11111111111223455566666555431 211222222221 258999999997 77888888
Q ss_pred HHhcCCCHHH----HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 223 VERKTENREE----LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 223 ~~r~~~t~~~----i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..|.....+. ...+...... ........+.++.+++++++.+++.+.+...
T Consensus 153 ~~R~dD~~e~~~~~y~~~v~~~y~--~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 153 KNRKPDRIEAEGIEFLERVAEGFA--LIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred HhcccCchhhhhHHHHHHHHHHHH--HHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7764322211 1111111111 1122334556677778999999999998864
No 456
>PLN02924 thymidylate kinase
Probab=98.95 E-value=3.7e-08 Score=82.72 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc----chhhhheecc
Q 043263 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN----ELLEYALVYG 165 (286)
Q Consensus 90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~----~~~~~~~~~~ 165 (286)
++|.+|+|.|..||||||+++.|+..+..-+..+. .++.|..+...|. .++..+... ...+...+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~-~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~a 84 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE-LWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFSA 84 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce-eeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHHH
Confidence 35899999999999999999999988753333332 2233332221121 111111110 0011111111
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeC--------------HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCH
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVD--------------IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENR 230 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~--------------~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~ 230 (286)
..+. ....+..++..|..+++|-- ...+......+..|+++|+||.+ .+...+|....+. ...
T Consensus 85 dR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~R~~~~~~~~E~ 162 (220)
T PLN02924 85 NRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAERGGYGGERYEK 162 (220)
T ss_pred HHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCcccccc
Confidence 1111 12346666777777766521 11122122223478999999997 5566677543211 111
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
.....++........ ....++++.++.++++.++|.+.+.....
T Consensus 163 ~~~~~rv~~~Y~~la---~~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 163 LEFQKKVAKRFQTLR---DSSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred HHHHHHHHHHHHHHh---hcCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 222333333222221 12344457777899999999999987544
No 457
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.94 E-value=2.1e-08 Score=81.29 Aligned_cols=165 Identities=23% Similarity=0.325 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|.|+|||||||||+++.|+..++..+.+..+.-|... ..+.+ -.......+.++.++....+. +...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~---~~~t~----lg~~~k~~i~~g~lv~d~i~~----~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI---AERTE----LGEEIKKYIDKGELVPDEIVN----GLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh---ccCCh----HHHHHHHHHHcCCccchHHHH----HHHHH
Confidence 48999999999999999999887655544332222110 00000 011122233444433322221 11222
Q ss_pred HHHHHHhcCCcEEEEeCHHHHHHHHHHh-------CCCcEEEEEecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Q 043263 174 QIREYMAKGYDIVLRVDIQGARTLRRIL-------GDSAVFVFLAAESEMALVERLVERK---TENREELLVRIATAREE 243 (286)
Q Consensus 174 ~i~~~~~~g~~~v~~~~~q~v~iaral~-------~~~~~~Illd~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~ 243 (286)
.+.+. ......+.++-+..+..++++- ...+.++.++.+ .+.+..|+..|. ..+.+.+..|+......
T Consensus 71 rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~-~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 71 RLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVP-EELLLERLLGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred HHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCC-HHHHHHHHhCccccccCCHHHHHHHHHHHHhc
Confidence 22222 1112466677655555554432 255667778987 488888988763 34788888888877654
Q ss_pred hhcc-CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 244 VQHV-KNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 244 ~~~~-~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
..++ .+.. +-++..+.+++..+.+.+.+
T Consensus 149 ~~pli~~y~-~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 149 TAPLIEYYS-VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccchhhhhe-eeccCCCCHHHHHHHHHHhh
Confidence 3322 2222 66677789999998887764
No 458
>PRK14529 adenylate kinase; Provisional
Probab=98.94 E-value=6.1e-08 Score=81.27 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|+|+||+||||||+++.|+..+...+.+.....|..-. .+.+ ....+...+.++.++... +..+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~---~~t~----lg~~i~~~i~~G~lvpde--------i~~~ 66 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIG---GGTE----LGKKAKEYIDRGDLVPDD--------ITIP 66 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhcc---CCCh----HHHHHHHHHhccCcchHH--------HHHH
Confidence 488999999999999999998876444433332221100 0100 112233333333333221 1222
Q ss_pred HHHHHHhc--CCcEEEEeCHHHHHHHHHHh-------CCCcEEEEEecCCHHHHHHHHHHhc------------------
Q 043263 174 QIREYMAK--GYDIVLRVDIQGARTLRRIL-------GDSAVFVFLAAESEMALVERLVERK------------------ 226 (286)
Q Consensus 174 ~i~~~~~~--g~~~v~~~~~q~v~iaral~-------~~~~~~Illd~~~~~~l~~rl~~r~------------------ 226 (286)
.+.+.+.. ....+++|-+.-+..|..+. ..++.+|+|+.+ .+.+.+|+..|.
T Consensus 67 lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~ 145 (223)
T PRK14529 67 MILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRRLCKNDNNHPNNIFIDAIK 145 (223)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCccccccCCcccccccCCCc
Confidence 33333322 34678888664444444331 257889999987 788889887651
Q ss_pred ---------------C--CC-HHHHHHHHHHHHHHh-------hccC------CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 227 ---------------T--EN-REELLVRIATAREEV-------QHVK------NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 227 ---------------~--~t-~~~i~~rl~~~~~~~-------~~~~------~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
+ .+ .+.|.+|+.....+. ++.+ ..-.+.++.++.++++.++|.+.+
T Consensus 146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1 12 468899998776541 1222 122556677789999999888765
No 459
>PRK03839 putative kinase; Provisional
Probab=98.94 E-value=6.2e-08 Score=78.91 Aligned_cols=146 Identities=23% Similarity=0.244 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|.|+|++||||||+++.|+..+..........-+.. .+.. ..+........
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-------------------------~~~~---~~~~~~~~~~~ 53 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-------------------------GIGE---EKDDEMEIDFD 53 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-------------------------CCcc---cCChhhhcCHH
Confidence 5899999999999999999988642222111100000 0000 00000000111
Q ss_pred HHHHHH---hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---h-c
Q 043263 174 QIREYM---AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV---Q-H 246 (286)
Q Consensus 174 ~i~~~~---~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~---~-~ 246 (286)
.+...+ ..+..+++++... .+..+..+|+|+++ .+.+.+|+..|+. ....+.+.......+. + +
T Consensus 54 ~l~~~~~~~~~~~~vIidG~~~-------~l~~~~~vi~L~~~-~~~~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~~~~~ 124 (180)
T PRK03839 54 KLAYFIEEEFKEKNVVLDGHLS-------HLLPVDYVIVLRAH-PKIIKERLKERGY-SKKKILENVEAELVDVCLCEAL 124 (180)
T ss_pred HHHHHHHHhccCCCEEEEeccc-------cccCCCEEEEEECC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1244577777532 12367889999987 7788899987753 2222222221111110 1 1
Q ss_pred cCCCcEEEECCC-CCHHHHHHHHHHHHHHHH
Q 043263 247 VKNFDYVVVNAE-GKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 247 ~~~~d~viv~~~-G~i~~~~~~l~~~i~~~~ 276 (286)
......+.++.+ .+++++.+++.+.+....
T Consensus 125 ~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 125 EEKEKVIEVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 122344555554 489999999999887643
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.93 E-value=1.2e-08 Score=84.41 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcce-eeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc-cchhhhheeccccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLH-FVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK-NELLEYALVYGDYK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~-~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~ 168 (286)
+|.+++|+|++||||||+++.|.+.+...+ ..+. ++|.++ +..+.. ..+.... . ...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~----------ld~d~~--------~~~~~~~~~~~~~~-~-~~~~ 82 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYL----------LDGDNV--------RHGLCSDLGFSDAD-R-KENI 82 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEE----------EcCEeH--------HhhhhhcCCcCccc-H-HHHH
Confidence 589999999999999999999998753100 0000 233222 111000 0000000 0 0000
Q ss_pred CccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcE-EEEEecCCHHHHHHH----HHHhcCCCHHHHHHHHHHH
Q 043263 169 GIPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAV-FVFLAAESEMALVER----LVERKTENREELLVRIATA 240 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~-~Illd~~~~~~l~~r----l~~r~~~t~~~i~~rl~~~ 240 (286)
....+.....+..|..++.... ......++.++....+ +|+|+++ .+.+.+| +..+.. ...+.+ +...
T Consensus 83 ~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~r~l~~~~~--~~~~~~-l~~~ 158 (198)
T PRK03846 83 RRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDPKGLYKKAR--AGEIRN-FTGI 158 (198)
T ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCchhHHHHhh--cCCccC-cccc
Confidence 0011112233456666665442 3344566676654454 6899997 6677777 111110 000100 1000
Q ss_pred HHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 241 REEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 241 ~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
....+....+|.+|..++.++++++++|.+.++.
T Consensus 159 r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 159 DSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred cccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 0011111447776655667899999998888764
No 461
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7.9e-08 Score=73.88 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=93.0
Q ss_pred EcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHHHHH
Q 043263 98 SGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIRE 177 (286)
Q Consensus 98 ~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (286)
+|.+||||||+...|+..+.. --++|.+++ +++.+.+|- ++.-+.+....+++..+ .+.+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~--------------~fidGDdlH--p~aNi~KM~-~GiPL~DdDR~pWL~~l-~~~~~~ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGA--------------KFIDGDDLH--PPANIEKMS-AGIPLNDDDRWPWLEAL-GDAAAS 62 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCC--------------ceecccccC--CHHHHHHHh-CCCCCCcchhhHHHHHH-HHHHHH
Confidence 599999999999999987641 115677654 555555552 23222222333333221 222333
Q ss_pred HHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCCCcE
Q 043263 178 YMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 178 ~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
....+...++.+.. +.-.++|.-.+ .-.+|+|+.+ .+.+.+|+..|.+. ....+..++++.. ++...-|.
T Consensus 63 ~~~~~~~~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE---~P~~de~v 137 (161)
T COG3265 63 LAQKNKHVVIACSALKRSYRDLLREANP-GLRFVYLDGD-FDLILERMKARKGHFMPASLLDSQFATLE---EPGADEDV 137 (161)
T ss_pred hhcCCCceEEecHHHHHHHHHHHhccCC-CeEEEEecCC-HHHHHHHHHhcccCCCCHHHHHHHHHHhc---CCCCCCCE
Confidence 34455556665543 44455554431 2455678875 99999999998764 5666666555531 11122267
Q ss_pred EEECCCCCHHHHHHHHHHHHHH
Q 043263 253 VVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 253 viv~~~G~i~~~~~~l~~~i~~ 274 (286)
|.++-+..++++++++.+.+..
T Consensus 138 i~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 138 LTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred EEeeCCCCHHHHHHHHHHHHhc
Confidence 7778788899999999888764
No 462
>PRK14528 adenylate kinase; Provisional
Probab=98.91 E-value=8.8e-08 Score=78.51 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
+.+.|+||+||||||+++.|+..+...+.++...-|..- -.+.. ........+..+.++... ...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~---~~~~~----~g~~~~~~~~~g~lvp~~--------~~~ 66 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV---KNQTA----MGIEAKRYMDAGDLVPDS--------VVI 66 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh---hcCCH----HHHHHHHHHhCCCccCHH--------HHH
Confidence 468999999999999999999876532322211111000 00000 000111122222211111 111
Q ss_pred HHHHHHHhc---CCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHhc------CCCHHHHHHH
Q 043263 173 KQIREYMAK---GYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVERK------TENREELLVR 236 (286)
Q Consensus 173 ~~i~~~~~~---g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r~------~~t~~~i~~r 236 (286)
..+.+.+.+ ....+++|-+.....|..+ + ..++.+|+||.+ .+.+.+|+..|. ..+.+.+.+|
T Consensus 67 ~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~gr~dd~~e~i~~R 145 (186)
T PRK14528 67 GIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEGRADDNEATIKNR 145 (186)
T ss_pred HHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccCCCCCCHHHHHHH
Confidence 122333322 2356777754333333222 1 368899999997 778889988652 2368889999
Q ss_pred HHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHH
Q 043263 237 IATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 237 l~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
++.......++ + ..-.+.++.+++++++..++.+.
T Consensus 146 l~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 146 LDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 98776543222 1 22245566777999998888654
No 463
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=6.5e-08 Score=80.18 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=95.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-----chhhhheecc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-----ELLEYALVYG 165 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~ 165 (286)
+|++|+|-|.-||||||++++|.+.+..-+..+ ..+|.|..+. -.+.++..+..+ ...+...+..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~trEP~~~~---------ige~iR~~ll~~~~~~~~~~e~lLfaa 71 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTREPGGTP---------IGEKIRELLLNGEEKLSPKAEALLFAA 71 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCCCh---------HHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 489999999999999999999999876333322 2344453211 011222222211 1111111222
Q ss_pred cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhcC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRILG---DSAVFVFLAAESEMALVERLVERKT 227 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~~ 227 (286)
.......+.+..++..|..++++- +...+..+...+. .|++.+|||.+ .+.-.+|+.+|+.
T Consensus 72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~ 150 (208)
T COG0125 72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 211223344556667776666641 2223333334454 78999999998 5666689888754
Q ss_pred C-CHH---H--HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 228 E-NRE---E--LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 228 ~-t~~---~--i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
. +.. . ...+......+.......-.++++.+..++++.+++.+.+....
T Consensus 151 ~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 151 LRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 3 221 1 12222222222211111224556777789999999998887653
No 464
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.90 E-value=1.1e-08 Score=82.92 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|++++|+|++||||||+++.|++.+... |.++..++.+.++..+..+ .+.... .......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~-----------------g~~v~~id~D~~~~~~~~~~~~~~~~-r~~~~~~ 64 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA-----------------GYPVEVLDGDAVRTNLSKGLGFSKED-RDTNIRR 64 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------------CCeEEEEcCccHHHHHhcCCCCChhh-HHHHHHH
Confidence 48999999999999999999999876311 1122222222222211100 000000 0000000
Q ss_pred ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATARE 242 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~ 242 (286)
. ..........|..++++.- .+....++... .+..+|+|+++ .+.+.+|..+ +.. ...+.+.+.. ..
T Consensus 65 ~-~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~-~e~~~~R~~~~l~~~~~--~~~i~~~~~~-~~ 138 (175)
T PRK00889 65 I-GFVANLLTRHGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAP-LEVCEQRDVKGLYAKAR--AGEIKHFTGI-DD 138 (175)
T ss_pred H-HHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCC-HHHHHHhCcccHHHHHH--cCCCCCCccc-CC
Confidence 0 0011112344555555432 22233444443 45678889987 6676677311 110 0011111111 11
Q ss_pred HhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 243 EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 243 ~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.......+|.++..++++++++++++.+.+..
T Consensus 139 ~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 139 PYEPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 11111347888777777999999999998864
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.88 E-value=1.3e-07 Score=75.62 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=78.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ 174 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
++|+||+||||||+++.|++.++... +++.++. .............+.+.. .. .++....+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~--------------v~~D~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 62 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF--------------IEGDDLH--PAANIEKMSAGIPLNDDD-RW-PWLQNLNDA 62 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE--------------EeCcccc--ChHHHHHHHcCCCCChhh-HH-HHHHHHHHH
Confidence 47999999999999999998764111 2222221 010011110000110000 00 000111123
Q ss_pred HHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCC
Q 043263 175 IREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 175 i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~ 249 (286)
....+..+..++++... +....++. ...+..+++++++ .+.+.+|+..|.+. +...+..++.... ......
T Consensus 63 ~~~~l~~~~~~Vi~~t~~~~~~r~~~~~-~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~~--~~~~~e 138 (163)
T TIGR01313 63 STAAAAKNKVGIITCSALKRHYRDILRE-AEPNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAALE--EPLADE 138 (163)
T ss_pred HHHHHhcCCCEEEEecccHHHHHHHHHh-cCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHhC--CCCCCC
Confidence 33345556555554321 22222232 2223345778886 78889999988642 3334433332211 110123
Q ss_pred CcEEEECCCCCHHHHHHHHHHHH
Q 043263 250 FDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 250 ~d~viv~~~G~i~~~~~~l~~~i 272 (286)
++.++++.++.++++.+++.+.+
T Consensus 139 ~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 139 TDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred CceEEEECCCCHHHHHHHHHHHH
Confidence 57788888899999998887765
No 466
>PRK07933 thymidylate kinase; Validated
Probab=98.88 E-value=1.7e-07 Score=78.47 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC-CcCCcceeeeCHHHHHHHhhc-------cchhhhheec
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG-EVNGKDYFFVSKEEFLQMVDK-------NELLEYALVY 164 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G-~~~g~~~~~~~~~~~~~~i~~-------~~~~~~~~~~ 164 (286)
++|+|-|..||||||+++.|...+..-+..+..+.. |..| ...|.. ++..+.. ....+...+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~-P~~~~~~~g~~--------ir~~l~~~~~~~~~~~~~~~llf~ 71 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF-PRYGRSVHADL--------AAEALHGRHGDLADSVYAMATLFA 71 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec-CCCCCCCccHH--------HHHHHcCCCCcccCCHHHHHHHHh
Confidence 479999999999999999999887643333333332 3222 122221 1221110 0011111111
Q ss_pred ccccCccHHHHHHHHhcCCcEEEEeC--------------------HHHHHHHHH-H--hCCCcEEEEEecCCHHHHHHH
Q 043263 165 GDYKGIPKKQIREYMAKGYDIVLRVD--------------------IQGARTLRR-I--LGDSAVFVFLAAESEMALVER 221 (286)
Q Consensus 165 ~~~~~~~~~~i~~~~~~g~~~v~~~~--------------------~q~v~iara-l--~~~~~~~Illd~~~~~~l~~r 221 (286)
.+.... .+.+..++..|..+++|-- ...+..... . ...|+++|+||.+ .+...+|
T Consensus 72 a~R~~~-~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~-~e~a~~R 149 (213)
T PRK07933 72 LDRAGA-RDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVP-VELAAER 149 (213)
T ss_pred hhhhhh-HHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCC-HHHHHHH
Confidence 111111 2345566666666665420 011111111 1 1368999999998 6677799
Q ss_pred HHHhcCC----------CHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263 222 LVERKTE----------NREELLVRIATAREEVQHVK-NFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 222 l~~r~~~----------t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
+.+|++. .......++.....+..... ....++++.+++++++.++|.+.+
T Consensus 150 i~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 150 ARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred HHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 9887531 11122333333332222111 234566677778999999888765
No 467
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2.5e-09 Score=98.35 Aligned_cols=173 Identities=15% Similarity=0.191 Sum_probs=107.1
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
+++++++..- .+.+++|.+.+ |+|+||.|--|||+|-+++.|.|..+ +..|+ ++|+++...++
T Consensus 264 l~v~~l~~~~--~~~dvSf~vr~-GEIlGiaGLvGaGRTEl~~~lfG~~~------------~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 264 LEVRNLSGGG--KVRDVSFTVRA-GEILGIAGLVGAGRTELARALFGARP------------ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred EEEecCCCCC--ceeCceeEEeC-CcEEEEeccccCCHHHHHHHHhCCCc------------CCCceEEECCEEccCCCH
Confidence 3455554322 37788888887 99999999999999999999999754 55666 78887766554
Q ss_pred HH-HHHHh--------hcc-----chhhhheecccccC------ccHH----HHHHH----------HhcCCcEEEEeCH
Q 043263 146 EE-FLQMV--------DKN-----ELLEYALVYGDYKG------IPKK----QIREY----------MAKGYDIVLRVDI 191 (286)
Q Consensus 146 ~~-~~~~i--------~~~-----~~~~~~~~~~~~~~------~~~~----~i~~~----------~~~g~~~v~~~~~ 191 (286)
.+ +..-+ .++ ...+|. ....+.. ++.. ..+++ .......+++|+.
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni-~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQ 407 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENI-TLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQ 407 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHhe-ehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhh
Confidence 32 22211 111 112222 1111111 1111 11111 1122245778999
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
|++.++|.+..+|.++|+ +|.-....+.+-+.+. .+.....++..+... +..||+|+|+.+|++.
T Consensus 408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl------l~~~DRIlVm~~Gri~ 480 (500)
T COG1129 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL------LGLSDRILVMREGRIV 480 (500)
T ss_pred hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH------HhhCCEEEEEECCEEE
Confidence 999999999977777777 5555556665555543 233566666655554 5799999999999763
No 468
>PRK13975 thymidylate kinase; Provisional
Probab=98.87 E-value=2.1e-07 Score=76.75 Aligned_cols=74 Identities=12% Similarity=0.325 Sum_probs=44.6
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHh-h---ccCCCcEEEECC-CCCHHHHHHHHHHHHHH
Q 043263 202 GDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEV-Q---HVKNFDYVVVNA-EGKLDSAVKLVESVIDA 274 (286)
Q Consensus 202 ~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~-~---~~~~~d~viv~~-~G~i~~~~~~l~~~i~~ 274 (286)
..|+++||||++ .+.+.+|+..|+.. .......++.....+. . .......++++. +.+++++.++|.+.+..
T Consensus 112 ~~pd~vi~L~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~ 190 (196)
T PRK13975 112 KKPDLVFLLDVD-IEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKD 190 (196)
T ss_pred CCCCEEEEEcCC-HHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 468899999997 77888999877531 2222222332222221 1 111233455565 46899999999988876
Q ss_pred HH
Q 043263 275 EK 276 (286)
Q Consensus 275 ~~ 276 (286)
..
T Consensus 191 ~~ 192 (196)
T PRK13975 191 KI 192 (196)
T ss_pred hC
Confidence 54
No 469
>PRK13947 shikimate kinase; Provisional
Probab=98.86 E-value=3e-08 Score=80.00 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE---NREELLVRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~---t~~~i~~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
...++|||+.+ .+.+.+|+..+... .......++.....+. .....+|.+|..++.++++++++|.+.
T Consensus 93 ~~~~vv~L~~~-~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~ 164 (171)
T PRK13947 93 KNGVVICLKAR-PEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKA 164 (171)
T ss_pred hCCEEEEEECC-HHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 33578999986 78888998765322 1111222332222221 112457888877777999999999883
No 470
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.84 E-value=1.7e-07 Score=82.97 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--cc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~ 168 (286)
++..|+|+|++||||||+.+.|+..++ .++...+. .+... ......+....++. +.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg--------------------~~~id~D~-~i~~~-~G~~i~ei~~~~G~~~fr 189 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG--------------------VPFVELNR-EIERE-AGLSVSEIFALYGQEGYR 189 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC--------------------CCEEeHHH-HHHHH-hCCCHHHHHHHHCHHHHH
Confidence 378999999999999999999998763 22221111 01110 00000000000111 11
Q ss_pred CccHHHHHHHHhcCCcEEEE-e-CH-HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--------CHHHHHHHH
Q 043263 169 GIPKKQIREYMAKGYDIVLR-V-DI-QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--------NREELLVRI 237 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~-~-~~-q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--------t~~~i~~rl 237 (286)
....+.+.+.+.....+++. | .. ........+. ...++|||+++ .+.+.+|+.++++. ..+.+....
T Consensus 190 ~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~-~~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~ 267 (309)
T PRK08154 190 RLERRALERLIAEHEEMVLATGGGIVSEPATFDLLL-SHCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLRRIL 267 (309)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHH-hCCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHH
Confidence 12223344444433334442 1 11 1111112233 45788999987 78888999875421 123443322
Q ss_pred HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
....+. .+.+|.+|.+++.+++++.++|...+...
T Consensus 268 ~~R~~~---y~~ad~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 268 ASREPL---YARADAVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred HHHHHH---HHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 222211 24589888766668999999999888654
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.84 E-value=1.1e-07 Score=78.57 Aligned_cols=24 Identities=46% Similarity=0.584 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|||+||+||||||++++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999863
No 472
>PRK06696 uridine kinase; Validated
Probab=98.83 E-value=3.9e-08 Score=83.00 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+|+|.|++||||||+++.|+..+.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998774
No 473
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.82 E-value=2.4e-08 Score=86.59 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=44.0
Q ss_pred CcEEEEeCH-HHHHHHHHHhCCCcEEEEEecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhh-----ccCCCcEE
Q 043263 183 YDIVLRVDI-QGARTLRRILGDSAVFVFLAAESEMALV---ERLVERKTENREELLVRIATAREEVQ-----HVKNFDYV 253 (286)
Q Consensus 183 ~~~v~~~~~-q~v~iaral~~~~~~~Illd~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~-----~~~~~d~v 253 (286)
..++++|-. ..-..++.++ ++.|+||++.+..+. +|..++.+.+.+.+..++..+.++.+ ....||.|
T Consensus 97 ~ivIvEG~~~l~~~~l~~~~---D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvV 173 (273)
T cd02026 97 KIVVIEGLHPLYDERVRELL---DFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVV 173 (273)
T ss_pred CEEEEeeehhhCchhhhhhc---cEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEE
Confidence 345666643 1112334455 889999998554433 34445545688888888876655443 25789988
Q ss_pred EECC
Q 043263 254 VVNA 257 (286)
Q Consensus 254 iv~~ 257 (286)
|...
T Consensus 174 I~~~ 177 (273)
T cd02026 174 IQVL 177 (273)
T ss_pred EEcc
Confidence 8544
No 474
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.82 E-value=1.8e-07 Score=75.31 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH-HHHHhhcc-----chhhhheeccc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE-FLQMVDKN-----ELLEYALVYGD 166 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~-~~~~i~~~-----~~~~~~~~~~~ 166 (286)
.+|+|+|++||||||+++.|++.++. ++ ++... +....... .+.........
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~--------------------~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 58 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSL--------------------KL--ISAGDIFRELAAKMGLDLIEFLNYAEENPE 58 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC--------------------ce--ecHHHHHHHHHHHcCCCHHHHHHHHhcCcH
Confidence 37999999999999999999986531 11 11111 11111000 00000000000
Q ss_pred ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Q 043263 167 YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE--- 243 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~--- 243 (286)
......+.+......+..+++++...... +-..+++.|+|+++ .+.+.+|+.+|.+.+......++......
T Consensus 59 ~~~~~~~~i~~~~~~~~~~Vi~g~~~~~~----~~~~~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~ 133 (171)
T TIGR02173 59 IDKKIDRRIHEIALKEKNVVLESRLAGWI----VREYADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKR 133 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccee----ecCCcCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 00011112233332455677766432111 11235688999997 77888999998776666655444332211
Q ss_pred ----h-----hccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 244 ----V-----QHVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 244 ----~-----~~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
. .....+|.+|-.+.-.+++ ++.|.+.+
T Consensus 134 ~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 134 RYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 0 0124567665444347888 88777654
No 475
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.81 E-value=9.7e-10 Score=100.03 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=81.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeee--------ecccCCC--CCCcCCcceeeeCHHHHHH
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT--------ATSRPMR--PGEVNGKDYFFVSKEEFLQ 150 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~--------~~~r~~~--~G~~~g~~~~~~~~~~~~~ 150 (286)
+...++.+.+ |.-+.|+||||||||+|.++|.|+.+.+.+... +.-..|. .|.+..+-++..+.+++..
T Consensus 498 v~~Ltf~i~~-G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~ 576 (728)
T KOG0064|consen 498 VPKLTFQIEP-GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR 576 (728)
T ss_pred ecceeEEecC-CceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence 4455677777 888999999999999999999999874432211 1111111 1223333334444444432
Q ss_pred H-hhccchhhhheecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHH
Q 043263 151 M-VDKNELLEYALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAES-------EMALVER 221 (286)
Q Consensus 151 ~-i~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~r 221 (286)
. +.+..+..-.... ++..+. ++.-.++..+-.+++.+|+.||+..||-+++.|...++ |+.+ +..+.+.
T Consensus 577 kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL-DEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 577 KGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL-DECTSAVSIDVEGKIFQA 654 (728)
T ss_pred cCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh-hhhhcccccchHHHHHHH
Confidence 2 1111110000000 000000 00001123333467889999999999999966666655 3322 3333333
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 043263 222 LVERKTENREELLVRIATA 240 (286)
Q Consensus 222 l~~r~~~t~~~i~~rl~~~ 240 (286)
. +..+.+...|+||.+.+
T Consensus 655 a-k~~gi~llsithrpslw 672 (728)
T KOG0064|consen 655 A-KDAGISLLSITHRPSLW 672 (728)
T ss_pred H-HhcCceEEEeecCccHH
Confidence 3 23344566677776643
No 476
>PRK06217 hypothetical protein; Validated
Probab=98.81 E-value=1.1e-06 Score=71.80 Aligned_cols=104 Identities=24% Similarity=0.217 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
+.|+|+|++||||||+++.|+..++...+... ++.... ....+... .. .....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D--------------~~~~~~--------~~~~~~~~----~~-~~~~~ 54 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD--------------DYFWLP--------TDPPFTTK----RP-PEERL 54 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC--------------ceeecc--------CCCCcccc----CC-HHHHH
Confidence 56999999999999999999987642111111 111000 00000000 00 00011
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263 173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK 226 (286)
Q Consensus 173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~ 226 (286)
..+.+.+..+...+++|..... ...+...++.+||||++ .+...+|+..|.
T Consensus 55 ~~~~~~~~~~~~~vi~G~~~~~--~~~~~~~~d~~i~Ld~~-~~~~~~Rl~~R~ 105 (183)
T PRK06217 55 RLLLEDLRPREGWVLSGSALGW--GDPLEPLFDLVVFLTIP-PELRLERLRLRE 105 (183)
T ss_pred HHHHHHHhcCCCEEEEccHHHH--HHHHHhhCCEEEEEECC-HHHHHHHHHcCc
Confidence 1222334445567777876443 23344567889999997 777778888653
No 477
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.80 E-value=9.9e-10 Score=89.24 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=90.3
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHh------
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV------ 152 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i------ 152 (286)
+++.+++.... |++-||+|.||||||-+++.+++.... +..... | . .++..++..+++.+.+.++
T Consensus 22 ~VD~v~ltlnE-GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTAD---R-~---Rf~~idLL~L~Pr~RRk~ig~~isM 93 (330)
T COG4170 22 AVDRVSMTLNE-GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD---R-M---RFDDIDLLRLSPRERRKLVGHNVSM 93 (330)
T ss_pred eeeeeeeeecc-ceeeeeeccCCCchhHHHHHHhcccccceEEEhh---h-c---ccccchhhcCChHHhhhhhccchhh
Confidence 57777888887 999999999999999999999997531 111100 0 0 0122222222332222221
Q ss_pred -hccc-------------h---hhhheeccccc---CccHH-H-----------HHHHHhcCCcEEEEeCHHHHHHHHHH
Q 043263 153 -DKNE-------------L---LEYALVYGDYK---GIPKK-Q-----------IREYMAKGYDIVLRVDIQGARTLRRI 200 (286)
Q Consensus 153 -~~~~-------------~---~~~~~~~~~~~---~~~~~-~-----------i~~~~~~g~~~v~~~~~q~v~iaral 200 (286)
.+.. + +..+.+.+.+. +-.+. . -++.+......+-+|+-|.+.+|-|+
T Consensus 94 IFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~ 173 (330)
T COG4170 94 IFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIAL 173 (330)
T ss_pred hhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhh
Confidence 0000 0 11222322211 11111 1 11223333345667888999999999
Q ss_pred hCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 201 LGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 201 ~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
...|.++|- +++.+...+.+.|. +..+.++..+.|++... ...||+|-|+-=|
T Consensus 174 AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i------s~W~d~i~VlYCG 235 (330)
T COG4170 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI------SQWADKINVLYCG 235 (330)
T ss_pred ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH------HHHhhheEEEEec
Confidence 866666665 44444444443332 33333555668888775 4789988887655
No 478
>PRK13976 thymidylate kinase; Provisional
Probab=98.79 E-value=1.4e-07 Score=78.68 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcc-eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc----cchhhhheecccc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK----NELLEYALVYGDY 167 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~ 167 (286)
++|+|-|.-||||||+++.|...+... +..-...++.|. |...| +.++..+.. +...+...+..+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g--------~~ir~~l~~~~~~~~~~~~llf~a~R 71 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFN--------ELVRGLLLSLKNLDKISELLLFIAMR 71 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHH--------HHHHHHHcCCcCCCHHHHHHHHHHHH
Confidence 369999999999999999999887532 211112333342 21111 112222111 0011111111111
Q ss_pred cCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhcCC-C
Q 043263 168 KGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERKTE-N 229 (286)
Q Consensus 168 ~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~~~-t 229 (286)
+....+.+..++..|..+++|- +...+..+.... ..|+++|+||.+ .+...+|+..++-+ .
T Consensus 72 ~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~~ 150 (209)
T PRK13976 72 REHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEFM 150 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhcc
Confidence 1112234556667777666641 112222222222 369999999997 66777887543321 1
Q ss_pred HHHHHHHHHHHHHHhhccCCCc-EEEECC---CCC---HHHHHHHHHHHHHHHHh
Q 043263 230 REELLVRIATAREEVQHVKNFD-YVVVNA---EGK---LDSAVKLVESVIDAEKA 277 (286)
Q Consensus 230 ~~~i~~rl~~~~~~~~~~~~~d-~viv~~---~G~---i~~~~~~l~~~i~~~~~ 277 (286)
......++.....+... ...+ .++++. ++. ++++.++|.+++.....
T Consensus 151 ~~~~l~~v~~~Y~~l~~-~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~ 204 (209)
T PRK13976 151 DLEFYDKVRKGFREIVI-KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK 204 (209)
T ss_pred cHHHHHHHHHHHHHHHH-hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence 12333444444333321 1222 233333 234 99999999999987653
No 479
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.79 E-value=4.5e-09 Score=86.99 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=46.4
Q ss_pred cEEEEeCHHHHHHHHHH----hCCCcEEEE------EecCCHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhccC
Q 043263 184 DIVLRVDIQGARTLRRI----LGDSAVFVF------LAAESEMALVERLVER-----KTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral----~~~~~~~Il------ld~~~~~~l~~rl~~r-----~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
..+.+|++|++.+++++ +.+|+++|+ +|+.....+.+.|.+. ++.+...++|.+.. +.
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-------i~ 180 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-------LA 180 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-------cc
Confidence 45667899999999988 467777777 6666555565555442 11244555687776 45
Q ss_pred CCcEEEECCCCC
Q 043263 249 NFDYVVVNAEGK 260 (286)
Q Consensus 249 ~~d~viv~~~G~ 260 (286)
.+|+|.++..++
T Consensus 181 ~~d~v~~~~~~~ 192 (198)
T cd03276 181 SSDDVKVFRMKD 192 (198)
T ss_pred cccceeEEEecC
Confidence 568888876554
No 480
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=8.8e-08 Score=79.11 Aligned_cols=27 Identities=48% Similarity=0.608 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+|||.|+|||||||+++.|...+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999998876
No 481
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.78 E-value=6.1e-08 Score=85.20 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhe
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYAL 162 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (286)
+.+++|+||+||||||++..|+..+.. ++..+..+|++|..++..|.++++++..++...+..+.|.+..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a- 82 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA- 82 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-
Confidence 578999999999999999999987653 4455677899999999999999988766555444444444422
Q ss_pred ecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 043263 163 VYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVER 225 (286)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r 225 (286)
.+.+++...+|...++.|.-... .++++.. +. ..+++...+.+++..+
T Consensus 83 ---------~~~i~~i~~~gk~pIlvGGt~~Y--~~al~~g--~~--~~p~~~~~~r~~l~~~ 130 (307)
T PRK00091 83 ---------LAAIADILARGKLPILVGGTGLY--IKALLEG--LS--PLPPADPELRAELEAL 130 (307)
T ss_pred ---------HHHHHHHHhCCCCEEEECcHHHH--HHHhccC--CC--CCCCCCHHHHHHHHHH
Confidence 45566777777776654432111 3344422 11 3445455555555543
No 482
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=90.52 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=89.4
Q ss_pred HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc
Q 043263 68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~ 139 (286)
.++.++..+||. .|.++++.+.+ |.+++|+|+|||||||+++++.|....... ....|++|.+.
T Consensus 378 ~e~~~IleSFGv~~r~ieryvlr~vNL~ikp-GdvvaVvGqSGaGKttllRmi~G~~~~~~e----e~y~p~sg~v~--- 449 (593)
T COG2401 378 NEFQDILESFGVRQRVIERYVLRNLNLEIKP-GDVVAVVGQSGAGKTTLLRMILGAQKGRGE----EKYRPDSGKVE--- 449 (593)
T ss_pred hHHHHHHHHhcchheeeeeeeeeceeeEecC-CCeEEEEecCCCCcchHHHHHHHHhhcccc----cccCCCCCcee---
Confidence 566777777764 69999999999 999999999999999999999987431111 11125555411
Q ss_pred eeeeCHHHHHHHhh--------ccchhhhh-eeccc---------ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHh
Q 043263 140 YFFVSKEEFLQMVD--------KNELLEYA-LVYGD---------YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 140 ~~~~~~~~~~~~i~--------~~~~~~~~-~~~~~---------~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~ 201 (286)
+.......+++ ...++++. ..-+. ..++..+.. ......-++.||..+..+|+.+.
T Consensus 450 ---vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAklla 523 (593)
T COG2401 450 ---VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLA 523 (593)
T ss_pred ---ccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHh
Confidence 01111112211 11122211 00000 011111111 12233457789999999999998
Q ss_pred CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHH
Q 043263 202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIAT 239 (286)
Q Consensus 202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~ 239 (286)
..|.+++. ||+.+...+.+.+.+. .+.|...++||-+.
T Consensus 524 erpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 524 ERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred cCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 66677665 7776555555544432 22344555665554
No 483
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.77 E-value=2e-07 Score=80.05 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=81.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
+|.|+|++||||||+++.|+..+. ..|.++..++.+.++..+.. +.. ............
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~-----------------~~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~~ 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS-----------------EKNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTLY 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-----------------HcCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHHH
Confidence 478999999999999999998753 11233333343433332210 000 000001111223
Q ss_pred HHHHHHhcCCcEEEEeCH----HH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh-
Q 043263 174 QIREYMAKGYDIVLRVDI----QG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ- 245 (286)
Q Consensus 174 ~i~~~~~~g~~~v~~~~~----q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~- 245 (286)
.+...+..+..+++++.. .+ ...++.. ..+..+|+++++ .+.+.+|...|+......+..++....+...
T Consensus 60 ~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~-~~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~ 137 (249)
T TIGR03574 60 LIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEY-NKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYEKFDEPGT 137 (249)
T ss_pred HHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhC-CCCEEEEEecCC-HHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCC
Confidence 456667778777777532 11 2223322 345677889987 7788889887765322233333322211111
Q ss_pred c--cCCCcEEEECCCC--CHHHHHHHHHHHHH
Q 043263 246 H--VKNFDYVVVNAEG--KLDSAVKLVESVID 273 (286)
Q Consensus 246 ~--~~~~d~viv~~~G--~i~~~~~~l~~~i~ 273 (286)
. ...++.++ +.++ .++++.++|.+.+.
T Consensus 138 ~~~wd~~~~~v-d~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 138 KYSWDLPDLTI-DTTKKIDYNEILEEILEISE 168 (249)
T ss_pred CCCccCceEEe-cCCCCCCHHHHHHHHHHHhh
Confidence 0 12344444 5444 55788888877654
No 484
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.77 E-value=2.2e-07 Score=81.89 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheec---c-cc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVY---G-DY 167 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~~ 167 (286)
+.+|.++|++||||||+++.|+..++ .+..++.+.++..+....-.....+. . ..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~---------------------~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP---------------------KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLV 60 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC---------------------CCEEEeccHHHHHhcCCCcccccccChHHHHHH
Confidence 36789999999999999999998752 11222333333322110000000000 0 00
Q ss_pred cCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHH---H
Q 043263 168 KGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE--NREELL---V 235 (286)
Q Consensus 168 ~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~---~ 235 (286)
+....+.+...+..|..++++... ++. ....+ ..-...+|+++++ .+.+.+|+.+|++. +.+.+. +
T Consensus 61 ~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~-~~~~la~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~ 138 (300)
T PHA02530 61 TKAQEAAALAALKSGKSVIISDTNLNPERRR-KWKELAKELGAEFEEKVFDVP-VEELVKRNRKRGERAVPEDVLRSMFK 138 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHH-HHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHccCcCCCCHHHHHHHHH
Confidence 111223345556778888886421 221 22222 1122335778885 88999999998543 556665 4
Q ss_pred HHHHHHHHhh-----ccCCCcEEEECCCCCHHH
Q 043263 236 RIATAREEVQ-----HVKNFDYVVVNAEGKLDS 263 (286)
Q Consensus 236 rl~~~~~~~~-----~~~~~d~viv~~~G~i~~ 263 (286)
+++....... .....+.++++-+|++.+
T Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 139 QMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred HHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 4443322110 112245677777777654
No 485
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.75 E-value=8.1e-08 Score=74.94 Aligned_cols=112 Identities=27% Similarity=0.407 Sum_probs=62.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchh---hhheecccccCc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELL---EYALVYGDYKGI 170 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~ 170 (286)
+|.++|++||||||+++.|.+.++ ...++.+.+...+...... .........+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQI 58 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHHH
Confidence 588999999999999999997653 2234444444433211000 000000111112
Q ss_pred cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE 228 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~ 228 (286)
..+.+...+..|..++++... ........+ .+-+..+|+++++ .+.+.+|+..|...
T Consensus 59 ~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 59 LNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCC
T ss_pred HHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCc
Confidence 234556677889898887422 111122222 2234566778886 78888999887653
No 486
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.74 E-value=9.4e-08 Score=78.25 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=83.2
Q ss_pred EEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhh-ccch---hhhheecccccCccH
Q 043263 97 ISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD-KNEL---LEYALVYGDYKGIPK 172 (286)
Q Consensus 97 l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~-~~~~---~~~~~~~~~~~~~~~ 172 (286)
|-|..||||||+++.|.+.+..-+.. ...+++|..+ ++ .+.++..+. .... .....+.........
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~-----~~----g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~ 70 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGST-----PI----GELIRELLRSESELSPEAEALLFAADRAWHLA 70 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSS-----HH----HHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCC-----hH----HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999887533322 1112222211 11 122333322 0110 111111111101122
Q ss_pred HHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhcCC-----CH
Q 043263 173 KQIREYMAKGYDIVLRV---------------DIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERKTE-----NR 230 (286)
Q Consensus 173 ~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~~~-----t~ 230 (286)
..+..++..|..++++- ....+......+. .|+++||||.+ .+...+|+..|+.. ..
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~-pe~~~~R~~~r~~~~~~~~~~ 149 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVD-PEEALKRIAKRGEKDDEEEED 149 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECC-HHHHHHHHHHTSSTTTTTTHH
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecC-HHHHHHHHHcCCccchHHHHH
Confidence 34566677787777752 1122222222222 88999999997 77888999988661 11
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHH
Q 043263 231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV 268 (286)
Q Consensus 231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l 268 (286)
.....+......+... .....++++.+.+++++.++|
T Consensus 150 ~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 150 LEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence 2223333333333332 466778888888898888775
No 487
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.74 E-value=1.4e-07 Score=77.06 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|.+++|+|++||||||+++.|.+.+.. .|.....++.+.++..+..+ .+... ...... .
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~-----------------~~~~~~~l~~d~~r~~l~~~~~~~~~-~~~~~~-~ 77 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES-----------------KGYRVYVLDGDNVRHGLNKDLGFSEE-DRKENI-R 77 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCcEEEECChHHHhhhccccCCCHH-HHHHHH-H
Confidence 4899999999999999999999987631 12122222333333221110 01000 000000 0
Q ss_pred ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHH----Hhc-CCCHHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGD-SAVFVFLAAESEMALVERLV----ERK-TENREELLVRIATA 240 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl~----~r~-~~t~~~i~~rl~~~ 240 (286)
.........+..|..++++.- ......++.++.. +..+++++++ .+.+.+|-. ... ......+ ...
T Consensus 78 ~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~l----~~~ 152 (184)
T TIGR00455 78 RIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQRDPKGLYKKARNGEIKGF----TGI 152 (184)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCchhHHHHHhcCCccCc----ccc
Confidence 001122334567777777642 3333555565533 3456789987 666666621 100 0011001 000
Q ss_pred HHHhhccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263 241 REEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 241 ~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
....+....+|.+|..++.++++..+++.+.
T Consensus 153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 153 DSPYEAPENPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred cCCCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence 0111112467877766656898888887654
No 488
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.74 E-value=1.8e-07 Score=87.34 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++|+.+.. ++.+|+|.|||||||||+++.|+..+.
T Consensus 274 LIDN~~~~~--~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 274 LIDNVFLMK--RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred EEeeeEecc--CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356665544 489999999999999999999998775
No 489
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.73 E-value=1e-08 Score=87.91 Aligned_cols=66 Identities=11% Similarity=-0.063 Sum_probs=43.3
Q ss_pred EEEEeCHHHHHHHHHHhCC----CcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 185 IVLRVDIQGARTLRRILGD----SAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~----~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
.+.+|++|++.++++++.. |+++|+ ||+.....+.+.+.+.. +.+...++|+.+. ...||+
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-------~~~~d~ 227 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-------FSKADA 227 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-------HhhCCe
Confidence 4567888999999998743 455555 44444445555555432 3366677887555 467999
Q ss_pred EEECC
Q 043263 253 VVVNA 257 (286)
Q Consensus 253 viv~~ 257 (286)
++++.
T Consensus 228 i~~~~ 232 (247)
T cd03275 228 LVGVY 232 (247)
T ss_pred EEEEE
Confidence 98764
No 490
>PRK00625 shikimate kinase; Provisional
Probab=98.73 E-value=2.5e-07 Score=74.78 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.|.|+|.+||||||+++.|+..+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 491
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.71 E-value=2.7e-07 Score=74.47 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHhCCCcEEEEEecCCHHHHHHHHHHhcC---------CC-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHH
Q 043263 199 RILGDSAVFVFLAAESEMALVERLVERKT---------EN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV 268 (286)
Q Consensus 199 al~~~~~~~Illd~~~~~~l~~rl~~r~~---------~t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l 268 (286)
.++....++|||+.+ .+.+.+|+..+.. .. ...+...+....+.. ...++.+| +.+++++++.+++
T Consensus 89 ~~l~~~~~~v~l~~~-~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y--~~~a~~~I-d~~~~~e~v~~~i 164 (171)
T PRK03731 89 HFMRNNGIVIYLCAP-VSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALY--REVAHHII-DATQPPSQVVSEI 164 (171)
T ss_pred HHHHhCCEEEEEECC-HHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHH--HHhCCEEE-cCCCCHHHHHHHH
Confidence 344456789999997 7788899876421 11 122211111111111 13355544 6668899999998
Q ss_pred HHHHH
Q 043263 269 ESVID 273 (286)
Q Consensus 269 ~~~i~ 273 (286)
.+.+.
T Consensus 165 ~~~l~ 169 (171)
T PRK03731 165 LSALA 169 (171)
T ss_pred HHHHh
Confidence 88764
No 492
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.71 E-value=3e-09 Score=91.44 Aligned_cols=65 Identities=6% Similarity=-0.100 Sum_probs=41.3
Q ss_pred EEEEeCHHHHHHHHHHhC---CCcEEEEEecCC-------HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 185 IVLRVDIQGARTLRRILG---DSAVFVFLAAES-------EMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~---~~~~~Illd~~~-------~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
.+.++++|++++++++.. .++.++++|+|+ .+.+.+.|.+. .+.+...++|+.+. ...||+|
T Consensus 166 ~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~-------~~~~d~v 238 (251)
T cd03273 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGM-------FNNANVL 238 (251)
T ss_pred ccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH-------HHhCCEE
Confidence 455678899999998863 344455545444 55666666543 23356777888544 4679988
Q ss_pred EEC
Q 043263 254 VVN 256 (286)
Q Consensus 254 iv~ 256 (286)
+-.
T Consensus 239 ~~~ 241 (251)
T cd03273 239 FRT 241 (251)
T ss_pred EEE
Confidence 743
No 493
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.71 E-value=1.9e-07 Score=91.56 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=54.8
Q ss_pred cEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHhhccCCC-cEEEECCC
Q 043263 184 DIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR----EEVQHVKNF-DYVVVNAE 258 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~----~~~~~~~~~-d~viv~~~ 258 (286)
.++++|- .+.-..+++.++-|||+++.+....+|..+....+.+.+...+..-. ....++..+ |-++++++
T Consensus 139 ~~v~eGR----digtvv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts 214 (712)
T PRK09518 139 GIVAEGR----DITTVVAPDAEVRILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNS 214 (712)
T ss_pred cEEEecC----ccceEEecCCCeEEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECC
Confidence 5666653 12223456789999999997777777776654345666654443211 112223445 45555554
Q ss_pred C-CHHHHHHHHHHHHHHHH
Q 043263 259 G-KLDSAVKLVESVIDAEK 276 (286)
Q Consensus 259 G-~i~~~~~~l~~~i~~~~ 276 (286)
. +++++++.+.++++...
T Consensus 215 ~~~~~~v~~~i~~~i~~~~ 233 (712)
T PRK09518 215 DLDFDETLDLLIGLVEDAI 233 (712)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 4 89999999999887654
No 494
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.71 E-value=5.7e-09 Score=103.84 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
.+++++++. ..|.++++.++. |++++|+|+||||||||++.+.
T Consensus 614 ~L~v~~l~~---~~L~~isl~Ip~-GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE---NNLKNVDVEIPL-GKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc---CCcCceEEEEeC-CCEEEEEcCCCCCHHHHHHHHH
Confidence 366777752 258899999998 9999999999999999998763
No 495
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.71 E-value=2.6e-07 Score=74.10 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=43.5
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCC--CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~--~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+..+|+|+++ .+.+.+|+..|.+. +...+.+++... +.... -+.++++....+++...++...+++
T Consensus 90 ~~~~~v~l~a~-~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~----ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 90 PNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQFETL----QEPGADETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CCEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHHHc----CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 45566778886 89999999998642 344454444332 22211 3456677777788888888877754
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.70 E-value=6.1e-07 Score=70.42 Aligned_cols=72 Identities=26% Similarity=0.325 Sum_probs=48.2
Q ss_pred CCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHH----hhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATAREE----VQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~----~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
+|+.+++|.+++++.+.+|+.. |...+.+.|....+..+-. .-....-=.|+.|++|+.+++..++..+++.
T Consensus 109 ~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 109 NPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred CCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 8999999999989999899875 2333566663332222111 1111223367788889999999999988864
No 497
>PRK07429 phosphoribulokinase; Provisional
Probab=98.70 E-value=1.3e-07 Score=84.00 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=44.8
Q ss_pred CcEEEEeCH-HHHHHHHHHhCCCcEEEEEecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhh-----ccCCCcEE
Q 043263 183 YDIVLRVDI-QGARTLRRILGDSAVFVFLAAESEMALV---ERLVERKTENREELLVRIATAREEVQ-----HVKNFDYV 253 (286)
Q Consensus 183 ~~~v~~~~~-q~v~iaral~~~~~~~Illd~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~-----~~~~~d~v 253 (286)
..++++|-. ..-..++.++ ++.||||++.+..+. +|..++.+.+.+.+..++..++++.. ....||.|
T Consensus 106 ~iVIvEG~~~l~~~~lr~~~---D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiV 182 (327)
T PRK07429 106 KIVVVEGLHPLYDERVRELY---DFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVV 182 (327)
T ss_pred cEEEEechhhcCcHhHHhhC---CEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEE
Confidence 355666643 1122344555 899999998544443 33444445588888888877665544 25789988
Q ss_pred EECCC
Q 043263 254 VVNAE 258 (286)
Q Consensus 254 iv~~~ 258 (286)
|.+.-
T Consensus 183 I~~~p 187 (327)
T PRK07429 183 IQFLP 187 (327)
T ss_pred EEcCC
Confidence 87653
No 498
>PLN02199 shikimate kinase
Probab=98.70 E-value=6.7e-07 Score=77.37 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHh-hccchhhhheecccc--c
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV-DKNELLEYALVYGDY--K 168 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~--~ 168 (286)
|..|+|+|..||||||+.++|+..+. .. +++.+.+-... ....+.+....+|.. .
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--------------------~~--fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR 159 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG--------------------YT--FFDCDTLIEQAMNGTSVAEIFVHHGENFFR 159 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--------------------CC--EEehHHHHHHHhcCCCHHHHHHHhCHHHHH
Confidence 77899999999999999999998653 22 22222211111 111111111112211 1
Q ss_pred CccHHHHHHHHhcCCcEEE--EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc---C-----CCHHH---HHH
Q 043263 169 GIPKKQIREYMAKGYDIVL--RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK---T-----ENREE---LLV 235 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~--~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~---~-----~t~~~---i~~ 235 (286)
..-.+.+.+.... ..+++ +|..---...+.++. ...+||||++ .+.+.+||...+ + .+... ...
T Consensus 160 ~~E~e~L~~L~~~-~~~VIStGGG~V~~~~n~~~L~-~G~vV~Ldas-~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~ 236 (303)
T PLN02199 160 GKETDALKKLSSR-YQVVVSTGGGAVIRPINWKYMH-KGISIWLDVP-LEALAHRIAAVGTDSRPLLHDESGDAYSVAFK 236 (303)
T ss_pred HHHHHHHHHHHhc-CCEEEECCCcccCCHHHHHHHh-CCeEEEEECC-HHHHHHHHhhcCCCCCCcCCCCCcchhhhHHH
Confidence 1112223333332 23333 222111122233443 4689999997 788889998511 0 11111 112
Q ss_pred HHHHHHHH-hhccCCCcEEEE------------CCCCCHHHHHHHHHHHHHHHHh
Q 043263 236 RIATAREE-VQHVKNFDYVVV------------NAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 236 rl~~~~~~-~~~~~~~d~viv------------~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
++.....+ .+....||.+|. .++.++++++.+|.+.+.+...
T Consensus 237 ~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 237 RLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred HHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 33333322 122244998886 4556889999998888887654
No 499
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.69 E-value=4.6e-07 Score=75.96 Aligned_cols=25 Identities=52% Similarity=0.793 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+|+|+||+||||||+++.|++.++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998664
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.69 E-value=4.2e-07 Score=74.71 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=58.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ 174 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
|.|+|++||||||+++.|+..+...++++...-+... ... . .....+...+..+..... ....+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~----~~~--~-~~~~~~~~~~~~g~~~~~--------~~~~~l 66 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI----ASG--T-ELGKKAKEYIDSGKLVPD--------EIVIKL 66 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH----hcC--C-hHHHHHHHHHHcCCccCH--------HHHHHH
Confidence 7899999999999999999886533333221111000 000 0 000111111111111100 011122
Q ss_pred HHHHHhc---CCcEEEEeCH---HHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhc
Q 043263 175 IREYMAK---GYDIVLRVDI---QGARTLRRILG---DSAVFVFLAAESEMALVERLVERK 226 (286)
Q Consensus 175 i~~~~~~---g~~~v~~~~~---q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~ 226 (286)
+...+.. +...+++|-+ ........... .+..+|+|+++ .+.+.+|+..|.
T Consensus 67 ~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~ 126 (194)
T cd01428 67 LKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRR 126 (194)
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence 3333332 4566777632 11223333343 67889999997 788889998764
Done!