Query 043263
Match_columns 286
No_of_seqs 306 out of 2206
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 2.2E-31 7.5E-36 216.4 17.7 179 94-274 3-184 (186)
2 3tau_A Guanylate kinase, GMP k 99.9 3.8E-27 1.3E-31 195.8 16.1 189 91-282 7-196 (208)
3 3a00_A Guanylate kinase, GMP k 99.9 5.6E-27 1.9E-31 191.3 14.4 180 92-274 1-184 (186)
4 3ney_A 55 kDa erythrocyte memb 99.9 5.3E-26 1.8E-30 185.9 13.9 173 91-276 18-191 (197)
5 1s96_A Guanylate kinase, GMP k 99.9 1.8E-24 6.2E-29 180.7 21.7 188 91-281 15-204 (219)
6 3tr0_A Guanylate kinase, GMP k 99.9 1.2E-24 4E-29 179.8 18.7 189 91-282 6-194 (205)
7 1lvg_A Guanylate kinase, GMP k 99.9 3E-24 1E-28 176.9 19.6 184 91-277 3-190 (198)
8 2qor_A Guanylate kinase; phosp 99.9 4.9E-24 1.7E-28 176.4 20.4 184 91-276 11-198 (204)
9 3lnc_A Guanylate kinase, GMP k 99.9 6.1E-25 2.1E-29 185.2 14.3 199 81-282 17-216 (231)
10 1kgd_A CASK, peripheral plasma 99.9 3.1E-24 1.1E-28 174.1 12.4 173 91-275 4-179 (180)
11 4f4c_A Multidrug resistance pr 99.9 2.7E-26 9.2E-31 235.0 -7.6 179 65-263 1074-1295(1321)
12 1kjw_A Postsynaptic density pr 99.9 9.8E-23 3.4E-27 177.2 15.5 180 90-278 103-285 (295)
13 3tvt_A Disks large 1 tumor sup 99.9 8.5E-23 2.9E-27 176.8 14.6 180 91-278 99-280 (292)
14 3nh6_A ATP-binding cassette SU 99.9 7.4E-26 2.5E-30 197.6 -7.4 176 66-261 52-266 (306)
15 4f4c_A Multidrug resistance pr 99.9 8.6E-25 2.9E-29 223.9 -2.4 177 65-261 413-630 (1321)
16 1z6g_A Guanylate kinase; struc 99.9 5.5E-21 1.9E-25 159.7 20.2 198 80-280 12-213 (218)
17 2j41_A Guanylate kinase; GMP, 99.9 2.2E-21 7.5E-26 160.2 16.5 190 88-281 3-193 (207)
18 3tui_C Methionine import ATP-b 99.9 4.2E-24 1.4E-28 189.9 -6.1 176 67-261 24-242 (366)
19 3b5x_A Lipid A export ATP-bind 99.9 5.3E-23 1.8E-27 195.4 0.6 175 66-261 340-556 (582)
20 3tif_A Uncharacterized ABC tra 99.9 4.8E-24 1.6E-28 180.1 -5.9 174 68-261 2-223 (235)
21 3qf4_A ABC transporter, ATP-bi 99.8 1.5E-23 5.3E-28 199.0 -5.0 176 66-261 340-555 (587)
22 3gfo_A Cobalt import ATP-bindi 99.8 2.3E-24 7.8E-29 185.8 -9.9 176 67-261 7-222 (275)
23 4g1u_C Hemin import ATP-bindin 99.8 5E-24 1.7E-28 183.0 -8.0 176 67-261 11-226 (266)
24 3rlf_A Maltose/maltodextrin im 99.8 2.1E-24 7.3E-29 192.9 -11.0 175 68-261 4-212 (381)
25 3fvq_A Fe(3+) IONS import ATP- 99.8 3E-24 1E-28 190.7 -10.1 176 67-261 4-217 (359)
26 3qf4_B Uncharacterized ABC tra 99.8 1.6E-23 5.4E-28 199.5 -6.6 176 66-261 353-567 (598)
27 2ff7_A Alpha-hemolysin translo 99.8 2.1E-23 7.3E-28 177.4 -5.5 175 67-261 7-221 (247)
28 2xkx_A Disks large homolog 4; 99.8 1.8E-19 6.3E-24 174.7 20.2 189 81-278 520-711 (721)
29 4a82_A Cystic fibrosis transme 99.8 2.3E-23 8E-28 197.6 -7.4 176 66-261 338-553 (578)
30 1vpl_A ABC transporter, ATP-bi 99.8 3.6E-23 1.2E-27 176.7 -5.9 175 67-261 15-224 (256)
31 3b60_A Lipid A export ATP-bind 99.8 4.4E-23 1.5E-27 195.9 -6.2 175 66-261 340-556 (582)
32 2pcj_A ABC transporter, lipopr 99.8 4E-23 1.4E-27 173.3 -5.9 174 68-261 5-217 (224)
33 2olj_A Amino acid ABC transpor 99.8 5E-23 1.7E-27 176.4 -6.3 176 67-261 24-237 (263)
34 3gd7_A Fusion complex of cysti 99.8 1.3E-22 4.6E-27 182.4 -4.1 176 67-261 19-231 (390)
35 2yl4_A ATP-binding cassette SU 99.8 4.5E-23 1.6E-27 196.3 -7.8 175 66-261 339-559 (595)
36 2ixe_A Antigen peptide transpo 99.8 9.3E-23 3.2E-27 175.7 -5.3 174 67-261 16-234 (271)
37 1mv5_A LMRA, multidrug resista 99.8 4.8E-23 1.6E-27 174.9 -7.7 173 68-261 2-215 (243)
38 1ji0_A ABC transporter; ATP bi 99.8 6.1E-23 2.1E-27 173.9 -7.2 176 67-261 6-217 (240)
39 1v43_A Sugar-binding transport 99.8 1.6E-22 5.5E-27 180.8 -5.0 177 68-261 12-220 (372)
40 2it1_A 362AA long hypothetical 99.8 2.9E-23 1E-27 185.0 -10.5 175 68-261 4-212 (362)
41 2ghi_A Transport protein; mult 99.8 1.1E-22 3.7E-27 174.3 -6.6 174 67-261 17-231 (260)
42 2yyz_A Sugar ABC transporter, 99.8 7.6E-23 2.6E-27 182.1 -8.7 175 68-261 4-212 (359)
43 1g6h_A High-affinity branched- 99.8 1.4E-22 5E-27 173.3 -6.7 176 67-261 7-231 (257)
44 3g5u_A MCG1178, multidrug resi 99.8 3.5E-22 1.2E-26 204.2 -5.3 177 65-261 385-602 (1284)
45 1b0u_A Histidine permease; ABC 99.8 3.3E-22 1.1E-26 171.5 -4.7 176 67-261 6-231 (262)
46 1g29_1 MALK, maltose transport 99.8 5.4E-23 1.8E-27 184.2 -10.0 175 68-261 4-218 (372)
47 2ihy_A ABC transporter, ATP-bi 99.8 1.6E-22 5.4E-27 174.8 -7.7 176 67-261 21-241 (279)
48 1oxx_K GLCV, glucose, ABC tran 99.8 2.3E-22 8E-27 179.0 -7.3 175 68-261 4-219 (353)
49 3d31_A Sulfate/molybdate ABC t 99.8 6E-23 2.1E-27 182.2 -11.3 174 68-261 2-206 (348)
50 1z47_A CYSA, putative ABC-tran 99.8 5.8E-22 2E-26 176.0 -5.8 178 67-261 14-224 (355)
51 3g5u_A MCG1178, multidrug resi 99.8 1.8E-21 6.2E-26 198.9 -4.7 177 65-261 1028-1247(1284)
52 2d2e_A SUFC protein; ABC-ATPas 99.8 7.5E-22 2.6E-26 168.2 -6.5 177 68-261 4-222 (250)
53 2cbz_A Multidrug resistance-as 99.8 2.2E-22 7.4E-27 170.2 -10.7 172 68-261 4-206 (237)
54 2qi9_C Vitamin B12 import ATP- 99.8 7.4E-22 2.5E-26 167.9 -8.2 171 68-261 5-211 (249)
55 2yz2_A Putative ABC transporte 99.8 2.6E-21 8.9E-26 166.3 -7.1 172 68-261 3-216 (266)
56 2onk_A Molybdate/tungstate ABC 99.8 3.9E-21 1.4E-25 162.6 -6.5 176 68-261 2-205 (240)
57 2zu0_C Probable ATP-dependent 99.8 2.4E-21 8.1E-26 166.6 -9.2 176 67-261 20-243 (267)
58 2nq2_C Hypothetical ABC transp 99.7 3.1E-21 1.1E-25 164.5 -9.1 173 68-260 5-206 (253)
59 2pze_A Cystic fibrosis transme 99.7 2.2E-21 7.6E-26 163.2 -11.4 173 67-261 6-207 (229)
60 1sgw_A Putative ABC transporte 99.7 1.2E-21 4E-26 162.9 -14.4 173 67-262 10-211 (214)
61 2pjz_A Hypothetical protein ST 99.7 2.7E-20 9.3E-25 159.4 -7.3 179 68-261 2-204 (263)
62 2bbs_A Cystic fibrosis transme 99.7 3.4E-20 1.2E-24 160.9 -8.3 172 66-261 39-236 (290)
63 1znw_A Guanylate kinase, GMP k 99.7 5.4E-15 1.9E-19 122.1 21.3 184 86-273 15-200 (207)
64 3ozx_A RNAse L inhibitor; ATP 99.6 3.7E-18 1.3E-22 160.0 -7.2 171 67-258 269-461 (538)
65 3bk7_A ABC transporter ATP-bin 99.6 7.9E-17 2.7E-21 152.9 -1.6 169 71-259 95-304 (607)
66 3tsz_A Tight junction protein 99.6 2.2E-14 7.5E-19 129.2 13.9 161 81-278 221-384 (391)
67 1yqt_A RNAse L inhibitor; ATP- 99.6 7.3E-17 2.5E-21 151.4 -2.4 169 71-259 25-234 (538)
68 4i1u_A Dephospho-COA kinase; s 99.5 2E-14 6.9E-19 118.3 10.2 177 92-277 9-204 (210)
69 3ozx_A RNAse L inhibitor; ATP 99.5 1.7E-16 5.7E-21 148.8 -2.6 164 74-259 6-213 (538)
70 3j16_B RLI1P; ribosome recycli 99.5 3.6E-16 1.2E-20 148.2 -0.6 169 71-259 81-297 (608)
71 2iw3_A Elongation factor 3A; a 99.5 2.1E-16 7.3E-21 155.5 -2.9 73 183-262 899-977 (986)
72 1yqt_A RNAse L inhibitor; ATP- 99.5 3.9E-17 1.3E-21 153.3 -8.2 170 67-258 287-477 (538)
73 3shw_A Tight junction protein 99.5 4.3E-14 1.5E-18 129.2 12.0 162 81-278 213-376 (468)
74 3bk7_A ABC transporter ATP-bin 99.5 7.9E-17 2.7E-21 152.9 -6.5 170 67-258 357-547 (607)
75 3j16_B RLI1P; ribosome recycli 99.5 3.7E-16 1.3E-20 148.1 -3.2 165 71-258 350-543 (608)
76 2v9p_A Replication protein E1; 99.5 8.4E-17 2.9E-21 140.0 -9.1 150 66-261 100-255 (305)
77 3vaa_A Shikimate kinase, SK; s 99.5 1.2E-12 4.1E-17 107.2 13.8 172 80-276 14-197 (199)
78 4eaq_A DTMP kinase, thymidylat 99.4 1.5E-12 5E-17 109.2 14.3 176 91-278 25-228 (229)
79 2iw3_A Elongation factor 3A; a 99.4 1.3E-15 4.6E-20 149.9 -5.5 166 68-261 436-623 (986)
80 1ukz_A Uridylate kinase; trans 99.4 2.9E-12 9.8E-17 105.1 15.3 174 88-274 11-201 (203)
81 3aez_A Pantothenate kinase; tr 99.4 7.6E-14 2.6E-18 122.3 4.0 52 65-117 41-115 (312)
82 3lw7_A Adenylate kinase relate 99.4 1.2E-11 4.1E-16 98.4 16.4 100 174-275 68-177 (179)
83 2c95_A Adenylate kinase 1; tra 99.4 2.3E-12 7.9E-17 104.8 11.8 172 91-275 8-194 (196)
84 3lv8_A DTMP kinase, thymidylat 99.4 8.2E-12 2.8E-16 104.8 14.3 179 91-280 26-234 (236)
85 3ux8_A Excinuclease ABC, A sub 99.4 1.7E-14 5.9E-19 139.0 -2.6 66 184-256 201-276 (670)
86 3tlx_A Adenylate kinase 2; str 99.4 4.8E-12 1.6E-16 107.0 12.0 166 91-273 28-242 (243)
87 2z0h_A DTMP kinase, thymidylat 99.4 5.5E-12 1.9E-16 102.6 11.5 170 94-275 2-192 (197)
88 1jjv_A Dephospho-COA kinase; P 99.3 2.7E-12 9.1E-17 105.6 8.4 72 204-277 124-199 (206)
89 2jeo_A Uridine-cytidine kinase 99.3 1.2E-12 3.9E-17 110.9 6.2 79 204-282 154-243 (245)
90 3umf_A Adenylate kinase; rossm 99.3 4E-12 1.4E-16 105.4 9.1 172 91-274 28-213 (217)
91 3fb4_A Adenylate kinase; psych 99.3 5.9E-12 2E-16 104.2 9.9 165 94-274 2-214 (216)
92 4edh_A DTMP kinase, thymidylat 99.3 3.3E-11 1.1E-15 99.7 14.3 177 91-278 5-210 (213)
93 1nn5_A Similar to deoxythymidy 99.3 4.8E-11 1.6E-15 98.3 15.3 180 90-280 7-206 (215)
94 3t61_A Gluconokinase; PSI-biol 99.3 1.3E-11 4.5E-16 101.1 11.6 157 92-276 18-181 (202)
95 2bwj_A Adenylate kinase 5; pho 99.3 1.1E-11 3.8E-16 101.0 10.9 171 92-275 12-197 (199)
96 4eun_A Thermoresistant glucoki 99.3 6.8E-12 2.3E-16 102.8 9.7 159 91-274 28-193 (200)
97 3asz_A Uridine kinase; cytidin 99.3 1.6E-11 5.4E-16 101.2 11.6 69 203-272 124-205 (211)
98 3nwj_A ATSK2; P loop, shikimat 99.3 4.2E-12 1.4E-16 107.6 8.3 187 67-277 17-239 (250)
99 3kb2_A SPBC2 prophage-derived 99.3 1.2E-10 4E-15 92.5 16.2 80 194-276 85-168 (173)
100 3dl0_A Adenylate kinase; phosp 99.3 4.8E-12 1.6E-16 104.8 8.3 165 94-274 2-214 (216)
101 1qf9_A UMP/CMP kinase, protein 99.3 2.9E-11 9.9E-16 97.8 12.6 166 92-274 6-191 (194)
102 1sq5_A Pantothenate kinase; P- 99.3 3E-12 1E-16 112.0 6.8 52 66-117 36-105 (308)
103 4gp7_A Metallophosphoesterase; 99.3 2.9E-11 9.9E-16 96.6 11.6 150 84-264 2-162 (171)
104 2plr_A DTMP kinase, probable t 99.3 1.3E-10 4.4E-15 95.5 15.1 168 92-277 4-210 (213)
105 1y63_A LMAJ004144AAA protein; 99.3 2.1E-10 7.1E-15 92.6 15.5 166 85-277 4-177 (184)
106 3sr0_A Adenylate kinase; phosp 99.3 6.9E-11 2.4E-15 97.3 12.7 160 93-274 1-204 (206)
107 1vht_A Dephospho-COA kinase; s 99.3 1.2E-11 4.1E-16 102.6 8.1 74 202-277 124-197 (218)
108 2f6r_A COA synthase, bifunctio 99.2 2.3E-11 7.7E-16 105.1 10.0 92 183-279 182-273 (281)
109 3ux8_A Excinuclease ABC, A sub 99.2 2.2E-13 7.6E-18 131.3 -3.1 71 184-261 542-629 (670)
110 1knq_A Gluconate kinase; ALFA/ 99.2 1.8E-10 6.2E-15 92.0 13.7 157 91-273 7-172 (175)
111 4tmk_A Protein (thymidylate ki 99.2 1.1E-10 3.7E-15 96.6 12.7 176 91-278 2-210 (213)
112 1tev_A UMP-CMP kinase; ploop, 99.2 7.8E-11 2.7E-15 95.4 11.7 71 203-274 113-194 (196)
113 2v54_A DTMP kinase, thymidylat 99.2 1.9E-10 6.4E-15 94.0 14.0 172 91-279 3-195 (204)
114 2pbr_A DTMP kinase, thymidylat 99.2 2.7E-10 9.2E-15 92.2 14.6 70 203-274 122-191 (195)
115 3v9p_A DTMP kinase, thymidylat 99.2 3E-11 1E-15 100.8 8.3 173 91-274 24-226 (227)
116 2npi_A Protein CLP1; CLP1-PCF1 99.2 4.8E-14 1.6E-18 129.6 -9.8 52 65-121 116-167 (460)
117 3kfv_A Tight junction protein 99.2 1.4E-10 4.8E-15 100.3 12.4 145 92-278 145-293 (308)
118 3cm0_A Adenylate kinase; ATP-b 99.2 3.1E-11 1.1E-15 97.3 7.9 68 204-272 106-184 (186)
119 4e22_A Cytidylate kinase; P-lo 99.2 4.4E-11 1.5E-15 101.6 8.5 91 180-275 143-245 (252)
120 1uj2_A Uridine-cytidine kinase 99.2 1.3E-10 4.5E-15 98.6 11.2 74 205-279 152-238 (252)
121 2wwf_A Thymidilate kinase, put 99.2 2.8E-11 9.6E-16 99.6 6.8 172 91-275 9-200 (212)
122 1qhx_A CPT, protein (chloramph 99.2 6.4E-10 2.2E-14 88.8 14.2 160 92-272 3-176 (178)
123 3ld9_A DTMP kinase, thymidylat 99.2 6E-11 2.1E-15 98.6 7.7 174 91-276 20-217 (223)
124 2if2_A Dephospho-COA kinase; a 99.2 2.2E-11 7.5E-16 99.8 4.9 70 204-276 124-193 (204)
125 2grj_A Dephospho-COA kinase; T 99.2 2.5E-10 8.6E-15 92.9 11.0 56 204-275 130-187 (192)
126 4aby_A DNA repair protein RECN 99.1 9.7E-13 3.3E-17 119.7 -3.8 68 186-260 296-376 (415)
127 3b85_A Phosphate starvation-in 99.1 1.2E-12 4.1E-17 108.0 -2.9 124 91-239 21-160 (208)
128 2cdn_A Adenylate kinase; phosp 99.1 3.3E-09 1.1E-13 86.6 17.7 170 86-273 14-200 (201)
129 1zak_A Adenylate kinase; ATP:A 99.1 8.8E-11 3E-15 97.6 7.1 77 203-280 108-216 (222)
130 2vp4_A Deoxynucleoside kinase; 99.1 2.2E-10 7.4E-15 95.9 9.4 74 202-276 145-226 (230)
131 1uf9_A TT1252 protein; P-loop, 99.1 1.3E-10 4.4E-15 94.8 7.5 72 203-276 124-195 (203)
132 4hlc_A DTMP kinase, thymidylat 99.1 1.7E-09 5.8E-14 88.9 14.0 175 92-278 2-204 (205)
133 4dey_A Voltage-dependent L-typ 99.1 1.3E-10 4.3E-15 101.1 7.5 177 92-280 142-326 (337)
134 2rhm_A Putative kinase; P-loop 99.1 6.1E-10 2.1E-14 90.1 11.2 113 91-226 4-126 (193)
135 1kag_A SKI, shikimate kinase I 99.1 2E-10 6.9E-15 91.4 8.1 66 205-273 98-171 (173)
136 3uie_A Adenylyl-sulfate kinase 99.1 5.7E-11 1.9E-15 97.2 4.8 158 91-275 24-195 (200)
137 1nks_A Adenylate kinase; therm 99.1 5.1E-09 1.8E-13 84.4 16.4 161 93-272 2-193 (194)
138 3trf_A Shikimate kinase, SK; a 99.1 4.7E-10 1.6E-14 90.3 10.0 161 92-275 5-175 (185)
139 1cke_A CK, MSSA, protein (cyti 99.1 1.6E-09 5.5E-14 90.0 13.2 89 182-275 123-223 (227)
140 2qt1_A Nicotinamide riboside k 99.1 4.7E-10 1.6E-14 92.1 9.2 173 91-274 20-205 (207)
141 1htw_A HI0065; nucleotide-bind 99.1 3.7E-11 1.3E-15 94.7 2.3 46 70-116 10-57 (158)
142 1gvn_B Zeta; postsegregational 99.1 2E-10 7E-15 99.3 6.9 165 91-276 32-230 (287)
143 2pt5_A Shikimate kinase, SK; a 99.0 1.2E-09 4.2E-14 86.4 10.6 67 203-274 92-163 (168)
144 3pih_A Uvrabc system protein A 99.0 1.8E-11 6.3E-16 120.4 -0.3 72 183-261 803-891 (916)
145 3be4_A Adenylate kinase; malar 99.0 4E-09 1.4E-13 87.3 13.9 164 91-271 4-216 (217)
146 1q3t_A Cytidylate kinase; nucl 99.0 7.6E-09 2.6E-13 86.7 15.3 91 179-274 132-234 (236)
147 2xb4_A Adenylate kinase; ATP-b 99.0 1E-09 3.4E-14 91.4 9.8 163 94-272 2-222 (223)
148 2vf7_A UVRA2, excinuclease ABC 99.0 1.5E-11 5.2E-16 120.0 -1.6 72 183-261 728-816 (842)
149 3c8u_A Fructokinase; YP_612366 99.0 2.3E-09 7.9E-14 88.1 11.7 51 203-254 147-205 (208)
150 1kht_A Adenylate kinase; phosp 99.0 9.3E-09 3.2E-13 82.8 14.7 26 92-117 3-28 (192)
151 1zuh_A Shikimate kinase; alpha 99.0 1.9E-09 6.5E-14 85.4 10.4 68 201-272 94-167 (168)
152 2vli_A Antibiotic resistance p 99.0 7.8E-09 2.7E-13 82.8 14.1 155 91-275 4-172 (183)
153 2pez_A Bifunctional 3'-phospho 99.0 6.2E-10 2.1E-14 89.2 7.2 26 91-116 4-29 (179)
154 2pt7_A CAG-ALFA; ATPase, prote 99.0 4.1E-12 1.4E-16 112.2 -6.3 46 70-117 151-196 (330)
155 3iij_A Coilin-interacting nucl 99.0 4.7E-09 1.6E-13 84.1 12.3 150 92-274 11-170 (180)
156 1gtv_A TMK, thymidylate kinase 99.0 6.5E-11 2.2E-15 97.5 0.5 67 203-270 132-209 (214)
157 2bbw_A Adenylate kinase 4, AK4 98.9 1.8E-09 6E-14 91.2 8.1 25 91-115 26-50 (246)
158 3tmk_A Thymidylate kinase; pho 98.9 2.4E-09 8.2E-14 88.6 8.6 175 91-279 4-207 (216)
159 1rz3_A Hypothetical protein rb 98.9 3.1E-10 1.1E-14 92.9 3.3 27 91-117 21-47 (201)
160 1e4v_A Adenylate kinase; trans 98.9 3.1E-09 1.1E-13 87.7 9.3 162 94-272 2-213 (214)
161 1aky_A Adenylate kinase; ATP:A 98.9 4.9E-08 1.7E-12 80.7 16.3 166 91-273 3-218 (220)
162 3ake_A Cytidylate kinase; CMP 98.9 1.8E-08 6E-13 82.3 13.1 86 183-273 119-207 (208)
163 1tq4_A IIGP1, interferon-induc 98.9 3.2E-10 1.1E-14 102.5 2.8 24 94-117 71-94 (413)
164 1e6c_A Shikimate kinase; phosp 98.9 6.9E-09 2.4E-13 82.3 10.1 69 204-273 94-169 (173)
165 1zd8_A GTP:AMP phosphotransfer 98.9 1.4E-08 5E-13 84.4 12.4 160 91-275 6-215 (227)
166 2jaq_A Deoxyguanosine kinase; 98.9 1.1E-08 3.9E-13 83.2 11.5 71 202-275 123-201 (205)
167 3a4m_A L-seryl-tRNA(SEC) kinas 98.9 1.1E-08 3.9E-13 87.0 11.8 159 91-274 3-173 (260)
168 3gmt_A Adenylate kinase; ssgci 98.9 4.7E-09 1.6E-13 87.3 9.0 166 92-274 8-229 (230)
169 2h92_A Cytidylate kinase; ross 98.9 4.8E-08 1.7E-12 80.6 15.2 90 179-273 115-216 (219)
170 2ygr_A Uvrabc system protein A 98.9 7.9E-11 2.7E-15 115.9 -2.1 66 184-256 862-938 (993)
171 1ly1_A Polynucleotide kinase; 98.9 1.6E-08 5.3E-13 80.7 11.7 152 93-274 3-172 (181)
172 3hjn_A DTMP kinase, thymidylat 98.9 1.9E-08 6.4E-13 82.1 12.2 169 94-274 2-191 (197)
173 2r6f_A Excinuclease ABC subuni 98.9 8.3E-11 2.8E-15 115.4 -2.3 66 184-256 844-920 (972)
174 2yvu_A Probable adenylyl-sulfa 98.9 1.2E-08 4.2E-13 82.1 10.8 160 91-274 12-183 (186)
175 2bdt_A BH3686; alpha-beta prot 98.9 1.7E-08 6E-13 81.4 11.4 25 92-116 2-26 (189)
176 1rj9_A FTSY, signal recognitio 98.9 3.7E-09 1.3E-13 92.0 7.7 27 91-117 101-127 (304)
177 3qf7_A RAD50; ABC-ATPase, ATPa 98.9 1.4E-10 4.7E-15 103.8 -1.6 69 186-261 280-362 (365)
178 1ak2_A Adenylate kinase isoenz 98.9 2.5E-07 8.7E-12 77.2 18.5 72 203-275 122-231 (233)
179 2iyv_A Shikimate kinase, SK; t 98.8 9E-09 3.1E-13 82.6 8.2 69 204-273 94-167 (184)
180 1zp6_A Hypothetical protein AT 98.8 4.2E-09 1.4E-13 85.0 5.9 26 91-116 8-33 (191)
181 3b9q_A Chloroplast SRP recepto 98.8 6.5E-09 2.2E-13 90.4 7.4 49 68-117 75-125 (302)
182 3fdi_A Uncharacterized protein 98.8 3.5E-07 1.2E-11 74.7 16.3 69 205-274 118-198 (201)
183 2og2_A Putative signal recogni 98.7 2.2E-08 7.4E-13 89.0 8.6 35 82-117 148-182 (359)
184 3a8t_A Adenylate isopentenyltr 98.7 1.3E-08 4.4E-13 89.2 6.9 125 91-226 39-195 (339)
185 1via_A Shikimate kinase; struc 98.7 1E-08 3.5E-13 81.7 5.7 69 203-274 92-166 (175)
186 3hdt_A Putative kinase; struct 98.7 7.3E-07 2.5E-11 74.0 17.0 69 205-274 138-218 (223)
187 1m7g_A Adenylylsulfate kinase; 98.7 8.9E-09 3E-13 84.8 5.1 157 91-274 24-202 (211)
188 2gks_A Bifunctional SAT/APS ki 98.7 1.9E-08 6.6E-13 94.3 7.5 161 92-274 372-540 (546)
189 3r20_A Cytidylate kinase; stru 98.7 2.7E-07 9.2E-12 77.0 13.3 92 179-274 124-227 (233)
190 2ze6_A Isopentenyl transferase 98.7 2.2E-08 7.5E-13 84.9 6.3 25 93-117 2-26 (253)
191 3zvl_A Bifunctional polynucleo 98.7 8.8E-08 3E-12 87.0 10.7 126 91-257 257-395 (416)
192 2f1r_A Molybdopterin-guanine d 98.7 3.1E-10 1.1E-14 90.5 -5.1 101 92-206 2-124 (171)
193 1ltq_A Polynucleotide kinase; 98.6 1.8E-07 6.1E-12 81.0 11.1 145 93-261 3-170 (301)
194 3tqc_A Pantothenate kinase; bi 98.6 5.4E-08 1.8E-12 85.1 6.6 26 92-117 92-117 (321)
195 2qm8_A GTPase/ATPase; G protei 98.6 6E-09 2E-13 92.1 0.3 50 67-117 29-80 (337)
196 3cr8_A Sulfate adenylyltranfer 98.6 1.7E-07 5.8E-12 87.8 10.1 27 91-117 368-394 (552)
197 2eyu_A Twitching motility prot 98.6 5.1E-09 1.7E-13 89.2 -1.2 35 80-117 16-50 (261)
198 2dpy_A FLII, flagellum-specifi 98.5 7.4E-09 2.5E-13 94.6 -0.6 50 66-117 130-182 (438)
199 3euj_A Chromosome partition pr 98.5 3.5E-08 1.2E-12 90.7 3.4 36 80-117 19-54 (483)
200 1e69_A Chromosome segregation 98.5 3.3E-09 1.1E-13 93.2 -3.7 66 187-259 221-299 (322)
201 2obl_A ESCN; ATPase, hydrolase 98.5 8.4E-09 2.9E-13 91.4 -1.4 49 67-117 45-96 (347)
202 1x6v_B Bifunctional 3'-phospho 98.5 5.8E-07 2E-11 85.1 10.5 162 91-275 51-223 (630)
203 1pui_A ENGB, probable GTP-bind 98.5 3.2E-08 1.1E-12 80.8 1.1 47 67-116 3-50 (210)
204 2p5t_B PEZT; postsegregational 98.4 5.9E-07 2E-11 75.9 8.7 27 91-117 31-57 (253)
205 2yhs_A FTSY, cell division pro 98.4 1.8E-07 6.3E-12 85.8 5.6 37 80-117 282-318 (503)
206 3exa_A TRNA delta(2)-isopenten 98.4 7.1E-08 2.4E-12 83.6 1.9 55 92-146 3-66 (322)
207 3e70_C DPA, signal recognition 98.4 4.5E-07 1.5E-11 79.7 6.8 27 91-117 128-154 (328)
208 3eph_A TRNA isopentenyltransfe 98.4 1.7E-07 5.8E-12 83.9 3.4 54 92-145 2-64 (409)
209 2qag_B Septin-6, protein NEDD5 98.3 4.4E-08 1.5E-12 88.7 -0.9 33 83-116 32-66 (427)
210 1tf7_A KAIC; homohexamer, hexa 98.3 3.1E-08 1.1E-12 92.7 -2.2 30 87-117 277-306 (525)
211 1dek_A Deoxynucleoside monopho 98.3 3.7E-07 1.3E-11 76.6 4.5 68 203-273 167-239 (241)
212 2gza_A Type IV secretion syste 98.3 4E-07 1.4E-11 81.1 4.6 39 82-121 166-204 (361)
213 3sop_A Neuronal-specific septi 98.3 3.4E-07 1.2E-11 78.3 3.2 25 93-117 3-27 (270)
214 3foz_A TRNA delta(2)-isopenten 98.3 1.5E-07 5.2E-12 81.4 0.8 54 92-145 10-72 (316)
215 1p5z_B DCK, deoxycytidine kina 98.3 2.6E-05 8.8E-10 66.1 14.6 73 203-276 174-260 (263)
216 1ye8_A Protein THEP1, hypothet 98.2 4.9E-07 1.7E-11 72.4 3.3 25 93-117 1-25 (178)
217 1m8p_A Sulfate adenylyltransfe 98.2 2E-06 6.9E-11 81.0 7.7 159 91-274 395-566 (573)
218 2ocp_A DGK, deoxyguanosine kin 98.2 7.3E-07 2.5E-11 74.7 4.0 73 203-276 149-235 (241)
219 3jvv_A Twitching mobility prot 98.2 2.3E-07 7.8E-12 82.4 0.4 26 92-117 123-148 (356)
220 1p9r_A General secretion pathw 98.2 2.3E-07 7.7E-12 84.2 0.4 49 67-118 143-193 (418)
221 1tf7_A KAIC; homohexamer, hexa 98.2 1.2E-07 4.2E-12 88.7 -1.5 37 80-117 27-66 (525)
222 1ixz_A ATP-dependent metallopr 98.2 1.1E-06 3.6E-11 74.2 4.4 50 65-117 23-74 (254)
223 2i3b_A HCR-ntpase, human cance 98.2 7.7E-07 2.6E-11 71.9 3.0 26 92-117 1-26 (189)
224 4a74_A DNA repair and recombin 98.1 1.3E-06 4.5E-11 72.1 3.7 26 91-116 24-49 (231)
225 1iy2_A ATP-dependent metallopr 98.1 1.7E-06 5.9E-11 74.0 4.5 50 65-117 47-98 (278)
226 3d3q_A TRNA delta(2)-isopenten 98.1 6.4E-06 2.2E-10 72.3 8.2 25 93-117 8-32 (340)
227 1u0l_A Probable GTPase ENGC; p 98.1 1.3E-06 4.6E-11 75.7 3.7 27 91-117 168-194 (301)
228 2ehv_A Hypothetical protein PH 98.1 1.7E-06 5.9E-11 72.4 3.7 26 87-113 26-51 (251)
229 3crm_A TRNA delta(2)-isopenten 98.0 1.3E-06 4.4E-11 76.2 2.2 26 93-118 6-31 (323)
230 2yv5_A YJEQ protein; hydrolase 98.0 3.5E-06 1.2E-10 73.1 4.6 26 91-117 164-189 (302)
231 3kta_A Chromosome segregation 98.0 2.9E-06 1E-10 67.6 3.6 33 83-117 19-51 (182)
232 2oap_1 GSPE-2, type II secreti 98.0 4E-06 1.4E-10 78.0 4.9 30 91-120 259-288 (511)
233 3szr_A Interferon-induced GTP- 98.0 8.3E-07 2.8E-11 84.4 0.3 23 95-117 48-70 (608)
234 1qhl_A Protein (cell division 98.0 4E-07 1.4E-11 75.7 -1.7 25 93-117 28-52 (227)
235 1lw7_A Transcriptional regulat 98.0 2.1E-06 7E-11 76.6 2.7 34 83-117 160-195 (365)
236 1cr0_A DNA primase/helicase; R 98.0 1.2E-06 4.1E-11 75.7 1.1 27 91-117 34-60 (296)
237 1nij_A Hypothetical protein YJ 98.0 3.5E-06 1.2E-10 73.6 4.0 46 91-140 3-50 (318)
238 2rcn_A Probable GTPase ENGC; Y 98.0 4.8E-06 1.6E-10 73.7 4.8 27 91-117 214-240 (358)
239 1ls1_A Signal recognition part 98.0 8.1E-06 2.8E-10 70.6 6.1 48 67-117 76-123 (295)
240 2qag_C Septin-7; cell cycle, c 98.0 1.4E-06 4.8E-11 78.9 0.9 45 66-117 10-56 (418)
241 3ec2_A DNA replication protein 97.9 3.7E-06 1.3E-10 67.0 2.8 25 92-116 38-62 (180)
242 2x8a_A Nuclear valosin-contain 97.9 5E-06 1.7E-10 71.1 3.2 35 80-117 35-69 (274)
243 2ewv_A Twitching motility prot 97.9 7.2E-06 2.5E-10 73.2 3.9 29 88-117 133-161 (372)
244 1t9h_A YLOQ, probable GTPase E 97.9 2.2E-06 7.5E-11 74.4 0.3 30 87-117 169-198 (307)
245 1odf_A YGR205W, hypothetical 3 97.9 8.4E-06 2.9E-10 70.3 4.0 27 91-117 30-56 (290)
246 2o8b_B DNA mismatch repair pro 97.8 3.3E-06 1.1E-10 84.5 1.4 49 67-116 750-812 (1022)
247 3ch4_B Pmkase, phosphomevalona 97.8 0.00024 8.1E-09 57.5 11.9 87 184-278 105-193 (202)
248 1svm_A Large T antigen; AAA+ f 97.8 1.3E-05 4.4E-10 71.6 4.5 37 80-117 158-194 (377)
249 2kjq_A DNAA-related protein; s 97.8 7.1E-06 2.4E-10 63.6 2.4 26 92-117 36-61 (149)
250 2w0m_A SSO2452; RECA, SSPF, un 97.8 6.9E-06 2.4E-10 67.7 2.4 26 91-116 22-47 (235)
251 2qnr_A Septin-2, protein NEDD5 97.8 5.1E-06 1.7E-10 72.1 1.5 38 71-115 2-41 (301)
252 2axn_A 6-phosphofructo-2-kinas 97.8 0.00038 1.3E-08 64.8 14.1 25 92-116 35-59 (520)
253 1np6_A Molybdopterin-guanine d 97.8 1.3E-05 4.5E-10 63.7 3.3 26 92-117 6-31 (174)
254 1wb9_A DNA mismatch repair pro 97.7 1E-05 3.4E-10 79.1 2.9 34 80-115 597-630 (800)
255 1xjc_A MOBB protein homolog; s 97.7 1.6E-05 5.5E-10 62.8 3.4 26 92-117 4-29 (169)
256 3thx_B DNA mismatch repair pro 97.7 7.9E-06 2.7E-10 80.7 1.9 35 80-115 662-696 (918)
257 2p67_A LAO/AO transport system 97.7 1.2E-05 4.1E-10 71.0 1.7 49 68-117 31-81 (341)
258 1in4_A RUVB, holliday junction 97.6 1.8E-06 6.1E-11 76.0 -3.8 25 93-117 52-76 (334)
259 3ice_A Transcription terminati 97.6 8.4E-06 2.9E-10 72.4 0.5 50 66-116 132-198 (422)
260 2cvh_A DNA repair and recombin 97.6 3E-05 1E-09 63.3 3.8 24 91-114 19-42 (220)
261 1ewq_A DNA mismatch repair pro 97.6 1.8E-05 6.2E-10 76.8 2.7 25 92-116 576-600 (765)
262 1zu4_A FTSY; GTPase, signal re 97.6 4.1E-05 1.4E-09 66.9 4.7 35 82-117 96-130 (320)
263 1n0w_A DNA repair protein RAD5 97.6 2.5E-05 8.4E-10 64.9 3.0 25 91-115 23-47 (243)
264 2o5v_A DNA replication and rep 97.6 2.2E-05 7.4E-10 69.7 2.8 63 188-261 268-345 (359)
265 1vma_A Cell division protein F 97.6 8.1E-05 2.8E-09 64.5 6.3 27 91-117 103-129 (306)
266 2dhr_A FTSH; AAA+ protein, hex 97.6 9.5E-05 3.2E-09 68.4 6.9 50 65-117 38-89 (499)
267 3thx_A DNA mismatch repair pro 97.6 2E-05 6.9E-10 78.0 2.6 31 81-112 652-682 (934)
268 1a7j_A Phosphoribulokinase; tr 97.6 1.8E-05 6.1E-10 68.2 1.4 27 91-117 4-30 (290)
269 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 4.4E-05 1.5E-09 68.5 3.7 25 91-115 19-43 (392)
270 2px0_A Flagellar biosynthesis 97.5 5.8E-05 2E-09 65.2 4.1 27 91-117 104-130 (296)
271 1pzn_A RAD51, DNA repair and r 97.5 4E-05 1.4E-09 67.8 3.0 30 86-116 126-155 (349)
272 2ffh_A Protein (FFH); SRP54, s 97.5 0.00013 4.4E-09 66.1 6.2 48 67-117 76-123 (425)
273 3m6a_A ATP-dependent protease 97.5 5.1E-05 1.8E-09 71.1 3.6 49 68-118 84-134 (543)
274 1j8m_F SRP54, signal recogniti 97.5 0.00012 4.3E-09 63.1 5.6 49 67-117 74-123 (297)
275 1mky_A Probable GTP-binding pr 97.5 6.6E-05 2.3E-09 68.5 3.8 51 92-142 180-232 (439)
276 1nlf_A Regulatory protein REPA 97.5 6.6E-05 2.3E-09 64.1 3.6 28 88-116 27-54 (279)
277 1oix_A RAS-related protein RAB 97.5 6.6E-05 2.2E-09 60.2 3.3 24 93-116 30-53 (191)
278 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 9.2E-05 3.1E-09 57.2 3.9 24 92-115 23-46 (149)
279 2gj8_A MNME, tRNA modification 97.4 7E-05 2.4E-09 59.0 2.9 25 91-115 3-27 (172)
280 2f9l_A RAB11B, member RAS onco 97.4 9E-05 3.1E-09 59.6 3.6 24 93-116 6-29 (199)
281 1w1w_A Structural maintenance 97.3 0.00012 4.1E-09 66.6 3.9 26 92-117 26-51 (430)
282 1bif_A 6-phosphofructo-2-kinas 97.3 0.0015 5E-08 60.1 10.6 25 92-116 39-63 (469)
283 2www_A Methylmalonic aciduria 97.3 0.00016 5.5E-09 63.9 3.9 25 92-116 74-98 (349)
284 1udx_A The GTP-binding protein 97.2 4.9E-05 1.7E-09 68.7 -0.0 34 82-116 148-181 (416)
285 3t34_A Dynamin-related protein 97.2 0.00017 5.8E-09 63.9 2.9 44 68-115 9-57 (360)
286 2wji_A Ferrous iron transport 97.2 0.00022 7.6E-09 55.5 3.2 23 93-115 4-26 (165)
287 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00031 1.1E-08 61.9 3.9 60 196-256 279-350 (359)
288 3lda_A DNA repair protein RAD5 97.1 0.0002 6.7E-09 64.5 2.7 25 88-113 175-199 (400)
289 3qks_A DNA double-strand break 97.1 0.00032 1.1E-08 57.0 3.7 25 92-116 23-47 (203)
290 1sxj_E Activator 1 40 kDa subu 97.1 0.00028 9.5E-09 62.0 3.6 23 95-117 39-62 (354)
291 1lv7_A FTSH; alpha/beta domain 97.1 0.00032 1.1E-08 58.9 3.7 34 81-117 37-70 (257)
292 2dr3_A UPF0273 protein PH0284; 97.0 0.00035 1.2E-08 57.9 3.6 24 91-114 22-45 (247)
293 3qkt_A DNA double-strand break 97.0 0.00038 1.3E-08 61.2 3.9 63 188-257 251-327 (339)
294 2vf7_A UVRA2, excinuclease ABC 97.0 0.00015 5.2E-09 70.9 1.4 64 185-256 379-453 (842)
295 1ega_A Protein (GTP-binding pr 97.0 0.00035 1.2E-08 60.4 3.4 24 92-115 8-31 (301)
296 2wjg_A FEOB, ferrous iron tran 97.0 0.00043 1.5E-08 54.7 3.5 24 92-115 7-30 (188)
297 2zej_A Dardarin, leucine-rich 97.0 0.00035 1.2E-08 55.4 2.9 23 93-115 3-25 (184)
298 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00032 1.1E-08 62.3 2.9 23 94-116 181-203 (364)
299 3k1j_A LON protease, ATP-depen 97.0 0.00052 1.8E-08 65.1 4.5 27 91-117 59-85 (604)
300 2qmh_A HPR kinase/phosphorylas 97.0 0.00047 1.6E-08 55.6 3.6 25 92-116 34-58 (205)
301 3pih_A Uvrabc system protein A 97.0 0.00022 7.5E-09 70.5 1.8 65 185-256 464-538 (916)
302 2ce7_A Cell division protein F 97.0 0.00067 2.3E-08 62.3 4.9 48 67-117 25-74 (476)
303 1sxj_C Activator 1 40 kDa subu 96.9 0.00057 1.9E-08 59.9 4.1 25 92-116 44-70 (340)
304 3cf0_A Transitional endoplasmi 96.9 0.00092 3.2E-08 57.6 5.0 26 92-117 49-74 (301)
305 2ygr_A Uvrabc system protein A 96.9 0.00024 8.2E-09 70.3 1.1 65 184-256 520-595 (993)
306 2r6f_A Excinuclease ABC subuni 96.9 0.00024 8.4E-09 70.0 1.1 65 185-256 504-578 (972)
307 1f6b_A SAR1; gtpases, N-termin 96.8 0.0003 1E-08 56.6 1.5 23 92-114 25-47 (198)
308 1ypw_A Transitional endoplasmi 96.8 0.00097 3.3E-08 65.4 5.2 30 88-118 235-264 (806)
309 3hr8_A Protein RECA; alpha and 96.8 0.00052 1.8E-08 60.6 3.0 26 91-116 60-85 (356)
310 1g8f_A Sulfate adenylyltransfe 96.8 0.00064 2.2E-08 62.9 3.4 27 91-117 394-420 (511)
311 3kl4_A SRP54, signal recogniti 96.7 0.00076 2.6E-08 61.1 3.2 27 91-117 96-122 (433)
312 3bos_A Putative DNA replicatio 96.7 0.001 3.5E-08 54.6 3.8 26 92-117 52-77 (242)
313 1m2o_B GTP-binding protein SAR 96.7 0.00094 3.2E-08 53.2 3.4 33 81-115 14-46 (190)
314 3lxx_A GTPase IMAP family memb 96.7 0.00092 3.1E-08 55.4 3.4 25 92-116 29-53 (239)
315 2lkc_A Translation initiation 96.7 0.0014 4.9E-08 51.0 4.3 25 91-115 7-31 (178)
316 1jbk_A CLPB protein; beta barr 96.7 0.0013 4.3E-08 51.7 3.8 25 92-116 43-67 (195)
317 4ad8_A DNA repair protein RECN 96.6 0.00033 1.1E-08 65.2 0.3 65 187-258 399-472 (517)
318 2dyk_A GTP-binding protein; GT 96.6 0.0014 4.8E-08 50.1 3.8 23 93-115 2-24 (161)
319 3b9p_A CG5977-PA, isoform A; A 96.6 0.0018 6.1E-08 55.4 4.8 26 92-117 54-79 (297)
320 3k53_A Ferrous iron transport 96.6 0.0012 4E-08 56.0 3.6 25 92-116 3-27 (271)
321 2ged_A SR-beta, signal recogni 96.6 0.0014 4.8E-08 52.0 3.8 24 92-115 48-71 (193)
322 1z2a_A RAS-related protein RAB 96.6 0.0013 4.4E-08 50.6 3.4 23 93-115 6-28 (168)
323 2w58_A DNAI, primosome compone 96.6 0.0014 4.9E-08 52.6 3.7 24 93-116 55-78 (202)
324 3tqf_A HPR(Ser) kinase; transf 96.6 0.0016 5.5E-08 51.3 3.7 24 92-115 16-39 (181)
325 2ohf_A Protein OLA1, GTP-bindi 96.5 0.001 3.5E-08 59.5 2.7 24 92-115 22-45 (396)
326 1u8z_A RAS-related protein RAL 96.5 0.0016 5.3E-08 50.0 3.4 24 92-115 4-27 (168)
327 1upt_A ARL1, ADP-ribosylation 96.5 0.0023 7.8E-08 49.4 4.3 24 92-115 7-30 (171)
328 1kao_A RAP2A; GTP-binding prot 96.5 0.0017 5.9E-08 49.7 3.6 24 92-115 3-26 (167)
329 2ce2_X GTPase HRAS; signaling 96.5 0.0016 5.4E-08 49.8 3.4 23 93-115 4-26 (166)
330 1jal_A YCHF protein; nucleotid 96.5 0.0022 7.6E-08 56.7 4.7 24 92-115 2-25 (363)
331 2zr9_A Protein RECA, recombina 96.5 0.0012 4.1E-08 58.3 2.8 26 91-116 60-85 (349)
332 2nzj_A GTP-binding protein REM 96.5 0.0014 4.9E-08 50.8 3.0 23 93-115 5-27 (175)
333 1fzq_A ADP-ribosylation factor 96.5 0.0015 5.1E-08 51.5 3.1 24 92-115 16-39 (181)
334 1ek0_A Protein (GTP-binding pr 96.5 0.0017 5.9E-08 49.9 3.4 23 93-115 4-26 (170)
335 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0017 5.8E-08 50.5 3.3 23 93-115 8-30 (177)
336 2p65_A Hypothetical protein PF 96.5 0.0015 5.3E-08 51.1 3.1 25 92-116 43-67 (187)
337 1z0j_A RAB-22, RAS-related pro 96.5 0.0017 6E-08 50.0 3.3 23 93-115 7-29 (170)
338 1c1y_A RAS-related protein RAP 96.4 0.0018 6.1E-08 49.8 3.4 23 93-115 4-26 (167)
339 1g16_A RAS-related protein SEC 96.4 0.0016 5.5E-08 50.1 3.1 23 93-115 4-26 (170)
340 1ky3_A GTP-binding protein YPT 96.4 0.0019 6.5E-08 50.4 3.6 24 92-115 8-31 (182)
341 1z08_A RAS-related protein RAB 96.4 0.0018 6E-08 50.0 3.3 23 93-115 7-29 (170)
342 3h4m_A Proteasome-activating n 96.4 0.0031 1.1E-07 53.5 5.2 26 92-117 51-76 (285)
343 1p6x_A Thymidine kinase; P-loo 96.4 0.0014 4.9E-08 57.2 3.0 27 91-117 6-32 (334)
344 2erx_A GTP-binding protein DI- 96.4 0.0019 6.6E-08 49.8 3.4 24 92-115 3-26 (172)
345 3q85_A GTP-binding protein REM 96.4 0.0016 5.6E-08 50.2 3.0 22 94-115 4-25 (169)
346 2fn4_A P23, RAS-related protei 96.4 0.0022 7.4E-08 50.0 3.7 24 92-115 9-32 (181)
347 3q72_A GTP-binding protein RAD 96.4 0.0012 4.2E-08 50.7 2.3 23 93-115 3-25 (166)
348 3pqc_A Probable GTP-binding pr 96.4 0.003 1E-07 49.8 4.6 24 92-115 23-46 (195)
349 2wsm_A Hydrogenase expression/ 96.4 0.0021 7.2E-08 52.2 3.7 25 92-116 30-54 (221)
350 4fcw_A Chaperone protein CLPB; 96.4 0.002 6.9E-08 55.3 3.7 25 92-116 47-71 (311)
351 3b1v_A Ferrous iron uptake tra 96.4 0.002 6.7E-08 54.8 3.5 24 92-115 3-26 (272)
352 3auy_A DNA double-strand break 96.4 0.002 6.8E-08 57.3 3.6 22 92-113 25-46 (371)
353 4b4t_J 26S protease regulatory 96.4 0.0029 9.8E-08 56.7 4.7 29 91-121 183-211 (405)
354 4b4t_L 26S protease subunit RP 96.4 0.0025 8.5E-08 57.8 4.3 25 95-119 218-242 (437)
355 1svi_A GTP-binding protein YSX 96.4 0.0025 8.7E-08 50.5 3.9 24 92-115 23-46 (195)
356 2qag_A Septin-2, protein NEDD5 96.4 0.00077 2.6E-08 59.8 0.9 43 66-115 16-60 (361)
357 1r2q_A RAS-related protein RAB 96.4 0.0021 7.2E-08 49.4 3.4 23 93-115 7-29 (170)
358 2dy1_A Elongation factor G; tr 96.4 0.003 1E-07 60.5 5.1 26 91-116 8-33 (665)
359 1v5w_A DMC1, meiotic recombina 96.4 0.0023 8E-08 56.2 3.9 27 88-115 119-145 (343)
360 4b4t_K 26S protease regulatory 96.4 0.0026 8.7E-08 57.6 4.2 24 95-118 209-232 (428)
361 3bc1_A RAS-related protein RAB 96.3 0.0022 7.5E-08 50.5 3.4 23 93-115 12-34 (195)
362 2oil_A CATX-8, RAS-related pro 96.3 0.0022 7.5E-08 50.8 3.4 24 92-115 25-48 (193)
363 3iev_A GTP-binding protein ERA 96.3 0.002 6.7E-08 55.8 3.3 24 92-115 10-33 (308)
364 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0022 7.6E-08 50.4 3.3 23 93-115 5-27 (189)
365 3clv_A RAB5 protein, putative; 96.3 0.0035 1.2E-07 49.7 4.5 24 92-115 7-30 (208)
366 1njg_A DNA polymerase III subu 96.3 0.0024 8.3E-08 52.0 3.6 24 93-116 46-69 (250)
367 3n70_A Transport activator; si 96.3 0.0024 8.3E-08 48.6 3.4 25 92-116 24-48 (145)
368 1r8s_A ADP-ribosylation factor 96.3 0.0024 8.1E-08 49.0 3.4 22 94-115 2-23 (164)
369 3tw8_B RAS-related protein RAB 96.3 0.0017 5.8E-08 50.6 2.5 23 93-115 10-32 (181)
370 2hxs_A RAB-26, RAS-related pro 96.3 0.0024 8.2E-08 49.7 3.3 24 92-115 6-29 (178)
371 2qby_A CDC6 homolog 1, cell di 96.3 0.002 6.9E-08 56.8 3.2 25 92-116 45-69 (386)
372 3iby_A Ferrous iron transport 96.3 0.0022 7.6E-08 53.9 3.2 23 93-115 2-24 (256)
373 2orw_A Thymidine kinase; TMTK, 96.3 0.0025 8.6E-08 50.8 3.4 22 92-113 3-24 (184)
374 2y8e_A RAB-protein 6, GH09086P 96.3 0.0023 8E-08 49.7 3.1 23 93-115 15-37 (179)
375 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0032 1.1E-07 52.6 4.1 26 92-117 39-64 (262)
376 1moz_A ARL1, ADP-ribosylation 96.3 0.0017 5.7E-08 50.9 2.3 24 91-114 17-40 (183)
377 2cxx_A Probable GTP-binding pr 96.3 0.0022 7.5E-08 50.5 3.0 22 94-115 3-24 (190)
378 2g6b_A RAS-related protein RAB 96.3 0.0026 8.9E-08 49.6 3.4 24 92-115 10-33 (180)
379 1l8q_A Chromosomal replication 96.3 0.0022 7.5E-08 55.7 3.2 25 92-116 37-61 (324)
380 3con_A GTPase NRAS; structural 96.3 0.0028 9.7E-08 50.0 3.6 23 93-115 22-44 (190)
381 3t15_A Ribulose bisphosphate c 96.3 0.0037 1.3E-07 53.6 4.5 26 92-117 36-61 (293)
382 1z0f_A RAB14, member RAS oncog 96.3 0.0026 9E-08 49.4 3.4 24 92-115 15-38 (179)
383 1nrj_B SR-beta, signal recogni 96.2 0.0031 1E-07 51.1 3.9 24 92-115 12-35 (218)
384 3lxw_A GTPase IMAP family memb 96.2 0.0025 8.7E-08 53.2 3.4 25 92-116 21-45 (247)
385 2a9k_A RAS-related protein RAL 96.2 0.0027 9.2E-08 49.7 3.4 24 92-115 18-41 (187)
386 3t1o_A Gliding protein MGLA; G 96.2 0.0031 1.1E-07 49.8 3.7 25 93-117 15-39 (198)
387 3ihw_A Centg3; RAS, centaurin, 96.2 0.003 1E-07 50.0 3.5 24 92-115 20-43 (184)
388 1e2k_A Thymidine kinase; trans 96.2 0.0018 6.1E-08 56.6 2.3 27 91-117 3-29 (331)
389 1fnn_A CDC6P, cell division co 96.2 0.0029 1E-07 55.9 3.8 24 94-117 46-69 (389)
390 2bme_A RAB4A, RAS-related prot 96.2 0.0027 9.1E-08 49.9 3.1 24 92-115 10-33 (186)
391 2efe_B Small GTP-binding prote 96.2 0.0029 1E-07 49.3 3.3 23 93-115 13-35 (181)
392 1ko7_A HPR kinase/phosphatase; 96.2 0.0032 1.1E-07 54.5 3.7 33 81-115 135-167 (314)
393 2bov_A RAla, RAS-related prote 96.2 0.0029 1E-07 50.5 3.4 24 92-115 14-37 (206)
394 2qu8_A Putative nucleolar GTP- 96.2 0.0042 1.4E-07 50.9 4.4 24 92-115 29-52 (228)
395 3syl_A Protein CBBX; photosynt 96.2 0.0034 1.2E-07 53.9 3.9 25 92-116 67-91 (309)
396 2gf9_A RAS-related protein RAB 96.2 0.003 1E-07 49.9 3.4 23 93-115 23-45 (189)
397 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0031 1.1E-07 49.6 3.4 24 92-115 7-30 (184)
398 1tue_A Replication protein E1; 96.1 0.0029 9.9E-08 51.3 3.1 29 88-117 55-83 (212)
399 3kkq_A RAS-related protein M-R 96.1 0.0035 1.2E-07 49.1 3.6 24 92-115 18-41 (183)
400 2hf9_A Probable hydrogenase ni 96.1 0.0036 1.2E-07 51.0 3.7 24 92-115 38-61 (226)
401 3dm5_A SRP54, signal recogniti 96.1 0.0032 1.1E-07 57.1 3.7 27 91-117 99-125 (443)
402 2fv8_A H6, RHO-related GTP-bin 96.1 0.0026 8.9E-08 51.2 2.8 24 92-115 25-48 (207)
403 1vg8_A RAS-related protein RAB 96.1 0.0035 1.2E-07 50.2 3.6 24 92-115 8-31 (207)
404 2fg5_A RAB-22B, RAS-related pr 96.1 0.003 1E-07 50.2 3.1 23 93-115 24-46 (192)
405 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0033 1.1E-07 49.2 3.4 24 92-115 5-28 (186)
406 1of1_A Thymidine kinase; trans 96.1 0.0023 8E-08 56.7 2.7 27 91-117 48-74 (376)
407 3tkl_A RAS-related protein RAB 96.1 0.0033 1.1E-07 49.8 3.4 23 93-115 17-39 (196)
408 2xtp_A GTPase IMAP family memb 96.1 0.0034 1.2E-07 52.6 3.6 24 92-115 22-45 (260)
409 2cjw_A GTP-binding protein GEM 96.1 0.0037 1.3E-07 49.9 3.6 23 93-115 7-29 (192)
410 1ksh_A ARF-like protein 2; sma 96.1 0.0036 1.2E-07 49.2 3.5 24 92-115 18-41 (186)
411 1wf3_A GTP-binding protein; GT 96.1 0.0032 1.1E-07 54.3 3.4 24 92-115 7-30 (301)
412 2e87_A Hypothetical protein PH 96.1 0.0027 9.4E-08 56.0 3.0 25 92-116 167-191 (357)
413 2dby_A GTP-binding protein; GD 96.1 0.0032 1.1E-07 55.9 3.3 22 94-115 3-24 (368)
414 1z06_A RAS-related protein RAB 96.1 0.0035 1.2E-07 49.5 3.3 23 93-115 21-43 (189)
415 3hws_A ATP-dependent CLP prote 96.1 0.0056 1.9E-07 54.0 4.9 26 92-117 51-76 (363)
416 3oes_A GTPase rhebl1; small GT 96.1 0.0034 1.1E-07 50.3 3.1 24 92-115 24-47 (201)
417 3llm_A ATP-dependent RNA helic 96.1 0.0038 1.3E-07 51.6 3.5 23 91-113 75-97 (235)
418 1zbd_A Rabphilin-3A; G protein 96.0 0.0035 1.2E-07 50.1 3.2 23 93-115 9-31 (203)
419 3t5g_A GTP-binding protein RHE 96.0 0.0039 1.3E-07 48.7 3.4 22 93-114 7-28 (181)
420 3cbq_A GTP-binding protein REM 96.0 0.0024 8.3E-08 51.0 2.2 24 92-115 23-46 (195)
421 2ew1_A RAS-related protein RAB 96.0 0.0035 1.2E-07 50.5 3.1 24 92-115 26-49 (201)
422 2gf0_A GTP-binding protein DI- 96.0 0.0045 1.5E-07 49.1 3.7 24 92-115 8-31 (199)
423 2a5j_A RAS-related protein RAB 96.0 0.0042 1.4E-07 49.2 3.6 24 92-115 21-44 (191)
424 1zd9_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 49.3 3.4 24 92-115 22-45 (188)
425 1c9k_A COBU, adenosylcobinamid 96.0 0.0032 1.1E-07 50.0 2.8 22 94-115 1-22 (180)
426 3dz8_A RAS-related protein RAB 96.0 0.0039 1.3E-07 49.4 3.4 24 92-115 23-46 (191)
427 3bwd_D RAC-like GTP-binding pr 96.0 0.0048 1.6E-07 48.1 3.9 24 92-115 8-31 (182)
428 4b4t_M 26S protease regulatory 96.0 0.0061 2.1E-07 55.2 4.9 25 95-119 218-242 (434)
429 2atv_A RERG, RAS-like estrogen 96.0 0.0051 1.7E-07 48.9 4.0 24 92-115 28-51 (196)
430 2z43_A DNA repair and recombin 96.0 0.0029 1E-07 55.1 2.7 27 88-115 104-130 (324)
431 1zj6_A ADP-ribosylation factor 96.0 0.0044 1.5E-07 48.8 3.6 24 92-115 16-39 (187)
432 2chg_A Replication factor C sm 96.0 0.0039 1.4E-07 50.1 3.4 23 94-116 40-62 (226)
433 2iwr_A Centaurin gamma 1; ANK 96.0 0.0045 1.6E-07 48.2 3.6 24 92-115 7-30 (178)
434 3p32_A Probable GTPase RV1496/ 96.0 0.0042 1.4E-07 54.8 3.7 25 92-116 79-103 (355)
435 2h17_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 48.9 3.2 24 92-115 21-44 (181)
436 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0038 1.3E-07 50.1 3.1 23 93-115 9-31 (206)
437 3a1s_A Iron(II) transport prot 96.0 0.004 1.4E-07 52.4 3.4 24 92-115 5-28 (258)
438 4b4t_H 26S protease regulatory 96.0 0.0045 1.5E-07 56.3 3.8 24 95-118 246-269 (467)
439 2p5s_A RAS and EF-hand domain 96.0 0.0051 1.8E-07 49.1 3.9 24 92-115 28-51 (199)
440 3reg_A RHO-like small GTPase; 96.0 0.0043 1.5E-07 49.2 3.4 24 92-115 23-46 (194)
441 2r6a_A DNAB helicase, replicat 96.0 0.0045 1.5E-07 56.5 3.8 29 87-116 199-227 (454)
442 1x3s_A RAS-related protein RAB 96.0 0.0048 1.6E-07 48.7 3.6 24 92-115 15-38 (195)
443 3c5c_A RAS-like protein 12; GD 95.9 0.0049 1.7E-07 48.8 3.6 24 92-115 21-44 (187)
444 4b4t_I 26S protease regulatory 95.9 0.0055 1.9E-07 55.2 4.2 24 95-118 219-242 (437)
445 3i8s_A Ferrous iron transport 95.9 0.0046 1.6E-07 52.5 3.6 24 92-115 3-26 (274)
446 2fh5_B SR-beta, signal recogni 95.9 0.0049 1.7E-07 49.7 3.6 24 92-115 7-30 (214)
447 4dhe_A Probable GTP-binding pr 95.9 0.0028 9.6E-08 51.5 2.1 24 92-115 29-52 (223)
448 3cph_A RAS-related protein SEC 95.9 0.0055 1.9E-07 49.2 3.8 24 92-115 20-43 (213)
449 2o52_A RAS-related protein RAB 95.9 0.0037 1.3E-07 50.1 2.8 24 92-115 25-48 (200)
450 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0056 1.9E-07 53.3 4.1 25 92-116 45-69 (322)
451 2il1_A RAB12; G-protein, GDP, 95.9 0.0034 1.2E-07 49.9 2.5 23 93-115 27-49 (192)
452 1gwn_A RHO-related GTP-binding 95.9 0.0047 1.6E-07 49.8 3.4 24 92-115 28-51 (205)
453 2r62_A Cell division protease 95.9 0.0021 7.2E-08 54.1 1.3 23 95-117 47-69 (268)
454 1d2n_A N-ethylmaleimide-sensit 95.9 0.005 1.7E-07 52.0 3.6 26 92-117 64-89 (272)
455 4bas_A ADP-ribosylation factor 95.9 0.004 1.4E-07 49.4 2.8 24 92-115 17-40 (199)
456 3cnl_A YLQF, putative uncharac 95.9 0.0057 2E-07 51.6 3.9 24 93-116 100-123 (262)
457 2b8t_A Thymidine kinase; deoxy 95.8 0.0059 2E-07 50.2 3.7 26 91-116 11-36 (223)
458 1jwy_B Dynamin A GTPase domain 95.8 0.0046 1.6E-07 53.3 3.2 24 92-115 24-47 (315)
459 3czq_A Putative polyphosphate 95.8 0.48 1.6E-05 40.5 15.7 31 91-121 85-115 (304)
460 1g41_A Heat shock protein HSLU 95.8 0.0074 2.5E-07 54.8 4.6 29 94-122 52-80 (444)
461 2h57_A ADP-ribosylation factor 95.8 0.0037 1.2E-07 49.5 2.3 24 92-115 21-44 (190)
462 3t5d_A Septin-7; GTP-binding p 95.8 0.0039 1.3E-07 52.8 2.6 23 93-115 9-31 (274)
463 2b6h_A ADP-ribosylation factor 95.8 0.0047 1.6E-07 49.1 2.9 23 92-114 29-51 (192)
464 2f7s_A C25KG, RAS-related prot 95.8 0.0048 1.6E-07 49.9 3.0 23 93-115 26-48 (217)
465 1sxj_D Activator 1 41 kDa subu 95.8 0.0046 1.6E-07 53.9 3.1 22 95-116 61-82 (353)
466 1ofh_A ATP-dependent HSL prote 95.8 0.0048 1.6E-07 52.7 3.1 26 92-117 50-75 (310)
467 2gco_A H9, RHO-related GTP-bin 95.8 0.0052 1.8E-07 49.2 3.1 24 92-115 25-48 (201)
468 2z4s_A Chromosomal replication 95.8 0.0049 1.7E-07 56.1 3.3 25 92-116 130-154 (440)
469 4ag6_A VIRB4 ATPase, type IV s 95.8 0.0052 1.8E-07 54.9 3.4 25 92-116 35-59 (392)
470 2g3y_A GTP-binding protein GEM 95.8 0.0058 2E-07 49.7 3.4 24 92-115 37-60 (211)
471 1puj_A YLQF, conserved hypothe 95.8 0.0069 2.4E-07 51.7 4.0 25 92-116 120-144 (282)
472 3cf2_A TER ATPase, transitiona 95.8 0.013 4.6E-07 57.0 6.5 39 76-117 225-263 (806)
473 2aka_B Dynamin-1; fusion prote 95.8 0.0074 2.5E-07 51.4 4.2 24 92-115 26-49 (299)
474 3eie_A Vacuolar protein sortin 95.8 0.0083 2.8E-07 52.0 4.6 26 92-117 51-76 (322)
475 2v3c_C SRP54, signal recogniti 95.8 0.0036 1.2E-07 56.8 2.2 26 92-117 99-124 (432)
476 2q3h_A RAS homolog gene family 95.8 0.0063 2.2E-07 48.4 3.5 24 92-115 20-43 (201)
477 3uk6_A RUVB-like 2; hexameric 95.7 0.0054 1.8E-07 54.0 3.3 26 92-117 70-95 (368)
478 2j1l_A RHO-related GTP-binding 95.7 0.0053 1.8E-07 49.7 3.0 23 92-114 34-56 (214)
479 2zts_A Putative uncharacterize 95.7 0.0051 1.8E-07 50.8 3.0 23 91-113 29-51 (251)
480 2i1q_A DNA repair and recombin 95.7 0.0048 1.7E-07 53.5 2.9 25 91-115 97-121 (322)
481 2atx_A Small GTP binding prote 95.7 0.0057 1.9E-07 48.4 3.1 23 93-115 19-41 (194)
482 4dcu_A GTP-binding protein ENG 95.7 0.0043 1.5E-07 56.7 2.7 24 92-115 23-46 (456)
483 2fu5_C RAS-related protein RAB 95.7 0.0032 1.1E-07 49.3 1.6 24 92-115 8-31 (183)
484 3gee_A MNME, tRNA modification 95.7 0.0045 1.6E-07 56.9 2.7 24 92-115 233-256 (476)
485 2hjg_A GTP-binding protein ENG 95.7 0.005 1.7E-07 55.9 3.0 23 93-115 4-26 (436)
486 2v1u_A Cell division control p 95.7 0.0051 1.7E-07 54.2 3.0 25 92-116 44-68 (387)
487 1sky_E F1-ATPase, F1-ATP synth 95.7 0.0068 2.3E-07 55.3 3.8 25 91-115 150-174 (473)
488 3bh0_A DNAB-like replicative h 95.7 0.007 2.4E-07 52.5 3.7 25 91-115 67-91 (315)
489 3d8b_A Fidgetin-like protein 1 95.7 0.01 3.5E-07 52.3 4.9 26 92-117 117-142 (357)
490 1um8_A ATP-dependent CLP prote 95.6 0.0074 2.5E-07 53.5 3.8 26 92-117 72-97 (376)
491 2hup_A RAS-related protein RAB 95.6 0.0065 2.2E-07 48.7 3.1 24 92-115 29-52 (201)
492 4gzl_A RAS-related C3 botulinu 95.6 0.008 2.7E-07 48.2 3.6 24 92-115 30-53 (204)
493 3llu_A RAS-related GTP-binding 95.6 0.0065 2.2E-07 48.4 3.1 25 92-116 20-44 (196)
494 1osn_A Thymidine kinase, VZV-T 95.6 0.0043 1.5E-07 54.3 2.1 27 91-117 11-38 (341)
495 2r2a_A Uncharacterized protein 95.6 0.0083 2.8E-07 48.4 3.6 21 92-112 5-25 (199)
496 2qp9_X Vacuolar protein sortin 95.6 0.0091 3.1E-07 52.6 4.1 25 93-117 85-109 (355)
497 3cpj_B GTP-binding protein YPT 95.6 0.0076 2.6E-07 49.1 3.3 23 93-115 14-36 (223)
498 3def_A T7I23.11 protein; chlor 95.6 0.0069 2.4E-07 50.9 3.2 24 92-115 36-59 (262)
499 3pfi_A Holliday junction ATP-d 95.6 0.0074 2.5E-07 52.5 3.5 25 93-117 56-80 (338)
500 1h65_A Chloroplast outer envel 95.5 0.0071 2.4E-07 51.1 3.2 24 92-115 39-62 (270)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.98 E-value=2.2e-31 Score=216.41 Aligned_cols=179 Identities=40% Similarity=0.592 Sum_probs=163.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
.|+|+||||||||||++.|...++ .+.+++++|||+|+.|+.+|.+|+|++.++|..++.++.|+++..+++++||++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 389999999999999999987765 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--CCC
Q 043263 173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV--KNF 250 (286)
Q Consensus 173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~--~~~ 250 (286)
+.+...+.+|..++++++.|.+..++..+....++||+.+|+.+.+.+||..|+..+.+.|..|+..+..+.... ..+
T Consensus 83 ~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~f 162 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAH 162 (186)
T ss_dssp HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999988887765568889999999999999999999889999999999887776533 468
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHH
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
|.||+|++ +++++++|.++|.+
T Consensus 163 D~vIvNdd--le~a~~~l~~iI~a 184 (186)
T 1ex7_A 163 DKVIVNDD--LDKAYKELKDFIFA 184 (186)
T ss_dssp SEEEECSS--HHHHHHHHHHHHTT
T ss_pred cEEEECcC--HHHHHHHHHHHHHh
Confidence 99999886 99999999999864
No 2
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.95 E-value=3.8e-27 Score=195.78 Aligned_cols=189 Identities=35% Similarity=0.632 Sum_probs=163.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|.+++|+|||||||||++++|++.++. +.+.+.+++|+|..|+.+|.++++++...+..++.++.|+++..++++.|+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 4999999999999999999999999875 889999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~ 249 (286)
.+.+.+.+.+..|..++++++.+....++..+ ....+||+.+++.+.+.+||.+|+..+.+.+..|+..+..+......
T Consensus 87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~-~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~ 165 (208)
T 3tau_A 87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAM-PEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS 165 (208)
T ss_dssp EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHC-TTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhC-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999988887776 34577888888888999999999877888999999998887777788
Q ss_pred CcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263 250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282 (286)
Q Consensus 250 ~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~ 282 (286)
+|.+|+|++ +++++++|.+++...+.+..|.
T Consensus 166 ~d~vivN~~--~~~~~~~l~~~i~~~~~~~~~~ 196 (208)
T 3tau_A 166 YDYAVVNDV--VANAVQKIKGIVETEHLKTERV 196 (208)
T ss_dssp SSEEEECSS--HHHHHHHHHHHHHHHHTBHHHH
T ss_pred CCEEEECcC--HHHHHHHHHHHHHHHHHhhhhh
Confidence 999999875 9999999999999987766553
No 3
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.95 E-value=5.6e-27 Score=191.31 Aligned_cols=180 Identities=39% Similarity=0.570 Sum_probs=132.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
|++++|+|||||||||++++|+++++ .++..+.+++|.|+.|+++|.++.+.+.+.+..++.++.++++..++++.|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 47899999999999999999999886 57788999999999999999999999999999998888999999999999999
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHH-HhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRR-ILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV-- 247 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iara-l~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~-- 247 (286)
+.+.+.+.+..|..++++++.+....++. .. ....+||+++|+.+.+.+||.+|+..+.+.+..|+..+..+.+..
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~-~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~ 159 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPE-LNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAET 159 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGG-GCCEEEEEECSCC---------------------------------C
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcC-CCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 98899999999999999999888888776 33 457789999998889999999998878888999999988776655
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 248 KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 248 ~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+|.||+|+ ++++++++|.+++..
T Consensus 160 ~~~d~vi~nd--~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 160 GAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp CCCSEEEECS--SHHHHHHHHHHHHTT
T ss_pred cCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 7899999987 499999999998854
No 4
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=5.3e-26 Score=185.95 Aligned_cols=173 Identities=26% Similarity=0.396 Sum_probs=144.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|++++|+||||||||||+++|.+.++ .+.+++.++||+|+.|+++|.+|.+++.+.|..++.++.|+++..++++.|+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG 97 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG 97 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence 499999999999999999999999887 5889999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~ 249 (286)
++.+.+++++..|..++++++.|.+..++... ..+++||+.||+.+ +..++...+..|+.... ......
T Consensus 98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~-~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~~~--~~~~~~ 166 (197)
T 3ney_A 98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAE-LSPFIVFIAPTDQG--------TQTEALQQLQKDSEAIR--SQYAHY 166 (197)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTT-TCEEEEEEEECCBS--------SCCHHHHHHHHHHHHHH--HHHGGG
T ss_pred cchhhHHHHHhcCCeEEEEECHHHHHHHHhcC-CCceEEEEeCCCcc--------ccchHHHHHHHHHHHHH--HhhccC
Confidence 99999999999999999999999988887654 34688999999853 11112233444443321 112467
Q ss_pred CcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 250 FDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 250 ~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
+|.||+|++ +++++++|..++..+.
T Consensus 167 fd~vivNd~--l~~a~~~l~~ii~~~~ 191 (197)
T 3ney_A 167 FDLSLVNNG--VDETLKKLQEAFDQAC 191 (197)
T ss_dssp CSEEEEESC--HHHHHHHHHHHHHHCC
T ss_pred CCEEEECCC--HHHHHHHHHHHHHHcc
Confidence 999999886 9999999999997754
No 5
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.93 E-value=1.8e-24 Score=180.69 Aligned_cols=188 Identities=34% Similarity=0.636 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC--cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
+|++++|+||||||||||+++|+++++ .+.+.+.+++|+++.++.+|.+|.+.+...|..+...+.|.++..++++.|
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 599999999999999999999999987 378899999999888888899999999999988888888888888888888
Q ss_pred CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263 169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
+.+.+.+.+++..|..++++++.+....++..+. ....|++.+++.+.+.+||..|+..+.+.+..|+..+..+.....
T Consensus 95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~ 173 (219)
T 1s96_A 95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYA 173 (219)
T ss_dssp EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 8888888999999999999999999988888875 467788888889999999988887789999999998877776667
Q ss_pred CCcEEEECCCCCHHHHHHHHHHHHHHHHhcccc
Q 043263 249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQ 281 (286)
Q Consensus 249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~ 281 (286)
.+|.+|+|++ ++++++++.+++...+.+..+
T Consensus 174 ~~d~~i~Nd~--l~~a~~~l~~ii~~~~~~~~~ 204 (219)
T 1s96_A 174 EYDYLIVNDD--FDTALTDLKTIIRAERLRMSR 204 (219)
T ss_dssp GSSEEEECSS--HHHHHHHHHHHHHHHHTBHHH
T ss_pred CCCEEEECcC--HHHHHHHHHHHHHHHHhhhHh
Confidence 8999998864 999999999999887766554
No 6
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.93 E-value=1.2e-24 Score=179.75 Aligned_cols=189 Identities=35% Similarity=0.615 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|++++|+|||||||||++++|+++++.+.+...++++.+..+...|..+.+.+...+..+...+.+.++..++++.|+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 49999999999999999999999998766777777788887777788889999988888887777777777788888888
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~ 250 (286)
..+.+.+.+..+..++++++.+.+..++..+ ....+|++++++.+.+.+|+.+|+..+.+.+..|+..+..+.++...+
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~-~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~ 164 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELF-PPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEF 164 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHHHC-TTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGC
T ss_pred hHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Confidence 8888899999999999999998888887776 445778888888999999999998778888899999998888777889
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~ 282 (286)
|.||+|+ +++++++++.+++...+.+..++
T Consensus 165 d~vi~n~--~~~~~~~~l~~~i~~~~~~~~~~ 194 (205)
T 3tr0_A 165 DYLVVND--NFDQAVQNLIHIISAERLQRDVQ 194 (205)
T ss_dssp SEEEECS--SHHHHHHHHHHHHHHHTTSHHHH
T ss_pred CEEEECC--CHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999876 69999999999999876665544
No 7
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.93 E-value=3e-24 Score=176.92 Aligned_cols=184 Identities=35% Similarity=0.567 Sum_probs=155.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|++++|+||||||||||+++|.++++ .++..+.+++|.|+.|+++|.++.+.+.+.++.++.++.++++..+.+++|+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 488999999999999999999999876 5778888999999999999999999999999999888889998888999999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV-- 247 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~-- 247 (286)
.+.+.+.+++..+..++.+...+.+...+.. ...+.++||++|+...+.+|+..++..+...|..++..+..+....
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~ 161 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKE 161 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-SCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGS
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-CCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888899999888888888877666544322 1245668899999999999999998889999999988877665434
Q ss_pred -CCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 248 -KNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 248 -~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
..+|+|++|++ +++++++|.+++.....
T Consensus 162 ~~~~D~iivnd~--le~a~~~l~~ii~~~~~ 190 (198)
T 1lvg_A 162 PGLFDLVIINDD--LDKAYATLKQALSEEIK 190 (198)
T ss_dssp TTTCSEEEECSS--HHHHHHHHHHHTHHHHH
T ss_pred cCCceEEEECCC--HHHHHHHHHHHHHHHhh
Confidence 68999999885 99999999999987653
No 8
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.93 E-value=4.9e-24 Score=176.35 Aligned_cols=184 Identities=28% Similarity=0.464 Sum_probs=156.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|.+++|+|||||||||+++.|+..++. +.+.+.+++|++..|+++|.++.+++.+.+...+.++.|++...+.++.|+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 5899999999999999999999988765 888899999999999999999999999999988888888888888888888
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh--c
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD-SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ--H 246 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~--~ 246 (286)
...+.+...+..|..+++++..+.+..++..+.. ..++|||++++.+.+.+|+.+|+..+.+.+..|+.....+.. .
T Consensus 91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~ 170 (204)
T 2qor_A 91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEAD 170 (204)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 8888888889999999999988877766665421 358899997779999999999876677888888887765543 4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
...+|.+++|+ ++++++++|.+++....
T Consensus 171 ~~~~d~vi~n~--~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 171 KVGFNYFIVND--DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHTCSEEEECS--SHHHHHHHHHHHHHHHC
T ss_pred hccCcEEEECc--CHHHHHHHHHHHHHHHh
Confidence 57799988765 69999999999998754
No 9
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.92 E-value=6.1e-25 Score=185.24 Aligned_cols=199 Identities=32% Similarity=0.586 Sum_probs=144.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH-hccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLR-ESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE 159 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~-~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~ 159 (286)
..++++.+.+ |++++|+|||||||||++++|+ ++++.+...+.++++.|..|+++|.++.+.+...+..+...+.+.+
T Consensus 17 ~~~~sl~v~~-G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (231)
T 3lnc_A 17 QGPGSMLKSV-GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIE 95 (231)
T ss_dssp -----CCEEC-CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cCCCCcccCC-CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceeh
Confidence 4566777776 9999999999999999999999 9987778888889999999999999999999999988887777777
Q ss_pred hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043263 160 YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIAT 239 (286)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~ 239 (286)
+..++++.|+...+.+.+.+..+..++++.+.+.....+..+......||+.+++.+.+.+|+.+|+..+.+.+..++..
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~ 175 (231)
T 3lnc_A 96 HAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKG 175 (231)
T ss_dssp EEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHH
T ss_pred hhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77788888877776778888888899999888777766665522346677888789999999999987788889999999
Q ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263 240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282 (286)
Q Consensus 240 ~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~ 282 (286)
+..+.++...+|.||+|+ +++++.+++.+++...+.+..+.
T Consensus 176 ~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i~~~~~~~~~~ 216 (231)
T 3lnc_A 176 AAFEISHCEAYDYVIVNE--DIEETADRISNILRAEQMKTCRQ 216 (231)
T ss_dssp HHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHHHTBGGGE
T ss_pred HHHHHhhhcCCeEEEECc--CHHHHHHHHHHHHHHHhhccccC
Confidence 988887778899999977 49999999999999887665543
No 10
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.91 E-value=3.1e-24 Score=174.11 Aligned_cols=173 Identities=26% Similarity=0.441 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|++++|+||||||||||+++|.+.++ .+.+.+.+++|+|+.|+++|.++.+++.+.+..++.++.++++..+.++.|+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg 83 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG 83 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence 489999999999999999999999876 4778899999999999999999999999999999988999998888899999
Q ss_pred ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--hcc
Q 043263 170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV--QHV 247 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~--~~~ 247 (286)
...+.+.+++..|..++++++.+.+..++... .....||+++|+.+.+.+| .+.+ .|+..+..+. ...
T Consensus 84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~-~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~~ 153 (180)
T 1kgd_A 84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAE-FAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTYA 153 (180)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTT-TCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhC-CCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhhh
Confidence 98888999999999999999988887776544 3458899999876655444 2334 5666554443 335
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 248 KNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 248 ~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..+|.+|+|++ ++++++++.++++.+
T Consensus 154 ~~~d~~i~n~~--~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 154 HYFDLTIINNE--IDETIRHLEEAVELV 179 (180)
T ss_dssp GGCSEEEECSS--HHHHHHHHHHHHHHH
T ss_pred CCCcEEEECcC--HHHHHHHHHHHHHHh
Confidence 78999998874 999999999998763
No 11
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=2.7e-26 Score=234.98 Aligned_cols=179 Identities=19% Similarity=0.273 Sum_probs=146.1
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
...|+++||+|+|+. +|+++++.+++ |+.|||+|+|||||||++++|.++++ |.+|+ +||
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~-Ge~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~iDG 1140 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEP-GQTLALVGPSGCGKSTVVALLERFYD------------TLGGEIFIDG 1140 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECT-TCEEEEECSTTSSTTSHHHHHTTSSC------------CSSSEEEETT
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECC-CCEEEEECCCCChHHHHHHHHhcCcc------------CCCCEEEECC
Confidence 456999999999953 68999999999 99999999999999999999999998 78887 899
Q ss_pred cceeeeCHHHHHHHh---hccchhhhheeccc------ccCccHHHHHHH------------HhcCCcEEE--------E
Q 043263 138 KDYFFVSKEEFLQMV---DKNELLEYALVYGD------YKGIPKKQIREY------------MAKGYDIVL--------R 188 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~------~~~~~~~~i~~~------------~~~g~~~v~--------~ 188 (286)
.|+..++.+.++..+ +|+.++.+.++..| ....+.+++.++ +++|+++.+ +
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence 999999999998865 66666444444333 123455555554 356777665 5
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+||+++|||++++|+++|| ||+.++..+++.|++. .+.|...|+||+++ +..||+|+|+++|++
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT-------i~~aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT-------VMNADCIAVVSNGTI 1293 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST-------TTTCSEEEEESSSSE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH-------HHhCCEEEEEECCEE
Confidence 789999999999999999998 7888888888888764 45588889999999 799999999999987
Q ss_pred HH
Q 043263 262 DS 263 (286)
Q Consensus 262 ~~ 263 (286)
.|
T Consensus 1294 vE 1295 (1321)
T 4f4c_A 1294 IE 1295 (1321)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 12
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.89 E-value=9.8e-23 Score=177.21 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=155.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchhhhheecccc
Q 043263 90 PNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELLEYALVYGDY 167 (286)
Q Consensus 90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 167 (286)
..|..|+|+|| ||+||++.|...++ .+.+++++|||+|+.|+.+|.+|+|+ +.++|..++.++.|+++..++++.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 34788999999 79999999988776 68899999999999999999999999 999999999999999999999999
Q ss_pred cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHhhc
Q 043263 168 KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR-EEVQH 246 (286)
Q Consensus 168 ~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~-~~~~~ 246 (286)
||++.+.+++.+.+|..++++++.|.+..++..- ..+++||+.+|+.+.+.+ |..|+ +.+.+..|+..+. .+...
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~-~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~ 255 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF 255 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTT-CCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcc-cCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998887666532 335999999999999876 76664 5677888888874 35555
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
...+|.+|+|+ ++++++++|.++|...+.+
T Consensus 256 ~~~fd~vivNd--~le~a~~~l~~ii~~~~~~ 285 (295)
T 1kjw_A 256 TECFSAIVEGD--SFEEIYHKVKRVIEDLSGP 285 (295)
T ss_dssp GGGCSEEECCS--SHHHHHHHHHHHHHHHSCS
T ss_pred cccCeEEEECc--CHHHHHHHHHHHHHhccCC
Confidence 67899998876 4999999999999887543
No 13
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.89 E-value=8.5e-23 Score=176.78 Aligned_cols=180 Identities=24% Similarity=0.289 Sum_probs=155.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchhhhheeccccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELLEYALVYGDYK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (286)
.+..|+|+|| ||+|+.+.|...++ .+.+++++|||+|+.|+++|.+|+|+ +.+.|..++.++.|+++..+++++|
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y 175 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY 175 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence 4677999999 49999999987776 58999999999999999999999998 8889999999999999999999999
Q ss_pred CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263 169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~ 248 (286)
|++.+.+.+.+.+|..++++++.|.+..++... ..+++||+.||+.+.+.+|+..++..+...+..|+... +.+...
T Consensus 176 GT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~-~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~--e~e~~~ 252 (292)
T 3tvt_A 176 GTSVASVREVAEKGKHCILDVSGNAIKRLQVAQ-LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKM--EQEFGE 252 (292)
T ss_dssp EEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTT-CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHH--HHHHTT
T ss_pred EEehHHHHHHHHcCCcEEEeccchhhhhccccc-ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHH--HHhhhh
Confidence 999999999999999999999999998887654 56799999999999998888777655556666655443 333357
Q ss_pred CCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.+|.||+|++ +++++++|.++|..++.+
T Consensus 253 ~fD~vIvNdd--le~a~~~l~~iI~~e~~~ 280 (292)
T 3tvt_A 253 YFTGVVQGDT--IEEIYSKVKSMIWSQSGP 280 (292)
T ss_dssp TCSEEECCSS--HHHHHHHHHHHHHHHTCS
T ss_pred hCCEEEECcC--HHHHHHHHHHHHHHhhCC
Confidence 8999998876 999999999999988654
No 14
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.88 E-value=7.4e-26 Score=197.63 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=129.1
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|+|++. |..|+ ++|.++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~-Ge~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~G~~i 118 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMP-GQTLALVGPSGAGKSTILRLLFRFYD------------ISSGCIRIDGQDI 118 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECT-TCEEEEESSSCHHHHHHHHHHTTSSC------------CSEEEEEETTEET
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcC-CCEEEEECCCCchHHHHHHHHHcCCC------------CCCcEEEECCEEc
Confidence 35899999999953 79999999998 99999999999999999999999997 66666 789888
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCC--------cEEEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGY--------DIVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~--------~~v~~~~~q~ 193 (286)
...+...++..+ .|...+....+..|+ + ....+.+.++ ++.|. ..+++|++||
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQR 198 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHH
T ss_pred ccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHH
Confidence 777777776643 333332222222221 0 1122222222 22233 3466789999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++||+++.+|+++|| ||+.++..+.+.|.+. .+.|...++|+++.. ..||+|+++++|++
T Consensus 199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-------~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV-------VNADQILVIKDGCI 266 (306)
T ss_dssp HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH-------HTCSEEEEEETTEE
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH-------HcCCEEEEEECCEE
Confidence 9999999999999888 7777777777777653 234777889999984 45999999999865
No 15
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.88 E-value=8.6e-25 Score=223.88 Aligned_cols=177 Identities=19% Similarity=0.267 Sum_probs=143.9
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
...|+++||+|.|+. .|+++++.+++ |++++|+||+||||||++++|.|+++ |.+|+ ++|
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~-G~~vaivG~sGsGKSTll~ll~~~~~------------~~~G~I~idG 479 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNA-GQTVALVGSSGCGKSTIISLLLRYYD------------VLKGKITIDG 479 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECT-TCEEEEEECSSSCHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecC-CcEEEEEecCCCcHHHHHHHhccccc------------cccCcccCCC
Confidence 346999999999963 68999999998 99999999999999999999999998 66666 899
Q ss_pred cceeeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCCcEEE--------EeC
Q 043263 138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGYDIVL--------RVD 190 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~~~v~--------~~~ 190 (286)
.++..++.+.++..+ .|..++.+.++..|+ + ..+.+++.++ +++|+++.+ +||
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ 559 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred ccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence 999999999988865 566654444444332 1 2344444433 467777666 579
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++|||++++|+++|| ||+.++..+.+.|.+. .+.|...|+||+++ ++.||+|+++++|++
T Consensus 560 kQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~-------i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 560 KQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST-------IRNADLIISCKNGQV 630 (1321)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT-------TTTCSEEEEEETTEE
T ss_pred HHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH-------HHhCCEEEEeeCCee
Confidence 9999999999999999999 8999988888888763 45588889999998 799999999999976
No 16
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=5.5e-21 Score=159.66 Aligned_cols=198 Identities=26% Similarity=0.412 Sum_probs=144.1
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchh
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELL 158 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~ 158 (286)
.|+++++.+++ |++++|+||||||||||+++|+++++ .+.+.+..+++.+..+..++.++.+.+...+..+..++.++
T Consensus 12 ~l~~isl~i~~-G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 90 (218)
T 1z6g_A 12 SGLVPRGSMNN-IYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFL 90 (218)
T ss_dssp ----------C-CCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cccCCceecCC-CCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchh
Confidence 57777888877 99999999999999999999999884 23334455566666666778899999998888877667777
Q ss_pred hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263 159 EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAVFVFLAAESEMALVERLVERKTENREELLVRI 237 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~-~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl 237 (286)
++..+.++.|+.....+.+++..+..++++.++......|..+. ..+..+|+++++...+.+++..++..+...+..++
T Consensus 91 ~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l 170 (218)
T 1z6g_A 91 EYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRM 170 (218)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred hhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777778888888888777766544433333221 12378889888899999999999888899998888
Q ss_pred HHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 238 ATAREEVQH--VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 238 ~~~~~~~~~--~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
.....+... ...||.|+++++ +++++..+.+++.....+..
T Consensus 171 ~~~~~~~~~~h~~~~d~iiv~~~--~~ea~~~~~~ii~~~~~~~~ 213 (218)
T 1z6g_A 171 EQLNIELHEANLLNFNLSIINDD--LTLTYQQLKNYLLNSYIHLN 213 (218)
T ss_dssp HHHHHHHHHHTTSCCSEEEECSS--HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhhcccCCCEEEECCC--HHHHHHHHHHHHHHHHHhhh
Confidence 876554332 267999999886 99999999999998766543
No 17
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.87 E-value=2.2e-21 Score=160.16 Aligned_cols=190 Identities=39% Similarity=0.693 Sum_probs=125.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD 166 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (286)
+++ |++++|+|||||||||++++|++++ +..+..+.+.++.+..|..++.++.+.+...+..++.++.++++..+.++
T Consensus 3 i~~-g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (207)
T 2j41_A 3 NEK-GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGN 81 (207)
T ss_dssp -CC-CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCC-CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCe
Confidence 444 9999999999999999999999987 33333556667777666777888888888888888777778777777777
Q ss_pred ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 043263 167 YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQH 246 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~ 246 (286)
.|+...+.+...+..|..+++++..+....++..+ ....++++.+++.+.+.+|+.+|+..+.+.+..++..+..+.+.
T Consensus 82 ~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~ 160 (207)
T 2j41_A 82 YYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM 160 (207)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHC-TTSEEEEEECCC---------------------------CGGGG
T ss_pred ecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 77777778888888888999998776665555554 23466777766788888999988766667788888877665555
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhcccc
Q 043263 247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQ 281 (286)
Q Consensus 247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~ 281 (286)
...+|.+++++ +++++.++|.+++...+.+.++
T Consensus 161 ~~~~d~vI~n~--~~e~~~~~i~~~l~~~~~~~~~ 193 (207)
T 2j41_A 161 MNLYDYVVVND--EVELAKNRIQCIVEAEHLKRER 193 (207)
T ss_dssp GGGCSEEEECS--SHHHHHHHHHHHHHHHHTBHHH
T ss_pred cccCCEEEECC--CHHHHHHHHHHHHHHhhcchhh
Confidence 67789887765 6999999999999988766554
No 18
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.85 E-value=4.2e-24 Score=189.90 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=124.1
Q ss_pred HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~-Gei~~IiGpnGaGKSTLlr~i~GL~~------------p~~G~I~i~G~ 90 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLER------------PTEGSVLVDGQ 90 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcC-CCEEEEEcCCCchHHHHHHHHhcCCC------------CCceEEEECCE
Confidence 4889999999963 69999999998 99999999999999999999999987 66666 7888
Q ss_pred ceeeeCHHHHHHH---h----hccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHH
Q 043263 139 DYFFVSKEEFLQM---V----DKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQ 192 (286)
Q Consensus 139 ~~~~~~~~~~~~~---i----~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q 192 (286)
++...+..++... + ++..+....++..+ .++...+. +.+++ ......+++|++|
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ 170 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 8876666554322 1 22222222222222 12333222 22222 2223457789999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++||+++.+|+++|+ ||+.+...+.+.|.+ ..+.|...++|+++.. ...||+|+++++|++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~------~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV------KRICDCVAVISNGEL 242 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999999988887777 666656666665543 3355788889999875 367999999988864
No 19
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.85 E-value=5.3e-23 Score=195.39 Aligned_cols=175 Identities=21% Similarity=0.258 Sum_probs=129.7
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|+. +++++++.+++ |++++|+|||||||||++++|+|+++ |++|+ ++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQ-GKTVALVGRSGSGKSTIANLFTRFYD------------VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECCEE
Confidence 45899999999972 69999999998 99999999999999999999999987 77787 78888
Q ss_pred eeeeCHHHHHHHh---hccch------hhhheecccccCccHHHHHHHH------------hcCC--------cEEEEeC
Q 043263 140 YFFVSKEEFLQMV---DKNEL------LEYALVYGDYKGIPKKQIREYM------------AKGY--------DIVLRVD 190 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~~~~~~~~i~~~~------------~~g~--------~~v~~~~ 190 (286)
+...+...++..+ .|+.. .+|.. ++.....+.+++.+++ ++|. ..+++|+
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIA-YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccccHHHHHh-ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 7666666555433 33322 22222 2211122333333332 2222 3567889
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++. ...||+|+++++|++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i 556 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST-------IEQADEILVVDEGEI 556 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence 9999999999999999988 8888788887777663 34477788999987 357999999999876
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.85 E-value=4.8e-24 Score=180.11 Aligned_cols=174 Identities=13% Similarity=0.171 Sum_probs=118.3
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~ 68 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKE-GEFVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVYIDNIK 68 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence 456788999962 68999999998 99999999999999999999999987 66666 67877
Q ss_pred eeeeCHHHHHH----Hh----hccchhhhheecccc---------cCccH----HHHHHHHh----------cCCcEEEE
Q 043263 140 YFFVSKEEFLQ----MV----DKNELLEYALVYGDY---------KGIPK----KQIREYMA----------KGYDIVLR 188 (286)
Q Consensus 140 ~~~~~~~~~~~----~i----~~~~~~~~~~~~~~~---------~~~~~----~~i~~~~~----------~g~~~v~~ 188 (286)
+...+...... .+ ++..+.....+..++ ..... +.+.+.+. .....+++
T Consensus 69 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 148 (235)
T 3tif_A 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148 (235)
T ss_dssp CTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred cccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH
Confidence 76555544321 11 222222221221111 01221 12222221 12345778
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
|++||+++||+++.+|+++|+ ||+.+...+.+.+.+ ..+.+...++|+++. ...||+|+++++|
T Consensus 149 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-------~~~~d~i~~l~~G 221 (235)
T 3tif_A 149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-------ARFGERIIYLKDG 221 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-------HTTSSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-------HHhCCEEEEEECC
Confidence 999999999999988887777 666656666665544 224577888998875 4689999999999
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 222 ~i 223 (235)
T 3tif_A 222 EV 223 (235)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 21
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.5e-23 Score=199.04 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=131.7
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|+. +|+++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~-Ge~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKP-GSLVAVLGETGSGKSTLMNLIPRLID------------PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECT-TCEEEEECSSSSSHHHHHHTTTTSSC------------CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCcEEEECCEE
Confidence 46899999999953 78999999998 99999999999999999999999997 66666 78999
Q ss_pred eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDI--------VLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~--------v~~~~~q 192 (286)
+...+...++..+ .|+..+.+.++..|+. ....+++.++ ++.|.++ +++||+|
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred cccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 8888888777654 3433322222222211 1223333322 1224333 4568999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++. ...||+|+++++|++
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~-------~~~~d~i~vl~~G~i 555 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT-------ALLADKILVLHEGKV 555 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH-------HTTSSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH-------HHhCCEEEEEECCEE
Confidence 99999999999999888 7777777887777653 34577888999998 468999999999865
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.84 E-value=2.3e-24 Score=185.79 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=118.7
Q ss_pred HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~-Ge~~~iiGpnGsGKSTLl~~l~Gl~~------------p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKR-GEVTAILGGNGVGKSTLFQNFNGILK------------PSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEET-TSEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECC
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCeEEEECCEECC
Confidence 4788999999964 69999999998 99999999999999999999999987 56665 6787763
Q ss_pred e--eCHHHHHHHh---hccc--hhhhheeccc------ccCccHH----HHHHHHh---------cCCcEEEEeCHHHHH
Q 043263 142 F--VSKEEFLQMV---DKNE--LLEYALVYGD------YKGIPKK----QIREYMA---------KGYDIVLRVDIQGAR 195 (286)
Q Consensus 142 ~--~~~~~~~~~i---~~~~--~~~~~~~~~~------~~~~~~~----~i~~~~~---------~g~~~v~~~~~q~v~ 195 (286)
. .....++..+ .|.. .+....+..+ .++...+ .+.+++. .....+++|++||++
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 1 1112233222 2211 1111111111 1233322 2233321 222457789999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~------~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV------PLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG------GGGCSEEEEEETTEE
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99999988888888 7776666666655432 245777889988764 367999999998864
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=5e-24 Score=183.04 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=122.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIAS-GEMVAIIGPNGAGKSTLLRLLTGYLS------------PSHGECHLLGQNLNS 77 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECCTTSCHHHHHHHHTSSSC------------CSSCEEEETTEETTT
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEECCc
Confidence 4778899999986 79999999998 99999999999999999999999986 77777 78887765
Q ss_pred eCHHHHHHHh---hc-cch------hhhheecccccC--ccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHh
Q 043263 143 VSKEEFLQMV---DK-NEL------LEYALVYGDYKG--IPKKQIREYMA---------KGYDIVLRVDIQGARTLRRIL 201 (286)
Q Consensus 143 ~~~~~~~~~i---~~-~~~------~~~~~~~~~~~~--~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~ 201 (286)
.+...++..+ .+ ..+ .++..+....+. ...+.+.++++ .....+++|++||+++||+++
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 78 WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 5655554432 22 111 122111111111 11233333322 223457789999999999999
Q ss_pred C------CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 202 G------DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 202 ~------~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
. +|+++|+ ||+.+...+.+.|.+ .++.+...++|+++.. ...||+|+++++|++
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~------~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA------ALYADRIMLLAQGKL 226 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence 7 7777666 666656666665543 2333677789998875 357999999998865
No 24
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=2.1e-24 Score=192.92 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=117.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|+++...
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~~~~~~ 70 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEKRMNDT 70 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECC-CCEEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECCEECCCC
Confidence 678899999986 78999999998 99999999999999999999999987 55555 566654333
Q ss_pred CHHH--HHHHhhccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263 144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q~v~iaral~~ 202 (286)
+... +....++..+..+..+..| .++...+. +.+++ .+....+++|++||+++||+++.
T Consensus 71 ~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 71 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp CGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 2211 0001122222222222222 12333322 22222 22334577899999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++|+ ||+.....+.+.|. +..+.+...++|+++.+ ...||+|+++++|++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA------MTLADKIVVLDAGRV 212 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence 8887777 56555555555444 33345778889998876 478999999999965
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=3e-24 Score=190.70 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=116.6
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|+++..
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~~i~~ 70 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDP-GEILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSGKTIFS 70 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETTEEEES
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCEECcc
Confidence 3678899999986 79999999998 99999999999999999999999987 55555 56665521
Q ss_pred ----eCHH--HHHHHhhccchhhhheeccc------ccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263 143 ----VSKE--EFLQMVDKNELLEYALVYGD------YKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 143 ----~~~~--~~~~~i~~~~~~~~~~~~~~------~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~ia 197 (286)
.... .+....++..+..+..+..| .++.. .+.+.+++ .+....+++|++||+++|
T Consensus 71 ~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 1110 00011122222222222222 11221 12233332 223356778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++.+|+++|+ ||+.....+.+.+. +..+.|...++|+++.+ ...||+|+++++|++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea------~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA------LQYADRIAVMKQGRI 217 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHHCCEEEEEECCEE
Confidence 999988887777 66655555554333 23345778889998876 468999999999975
No 26
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.6e-23 Score=199.47 Aligned_cols=176 Identities=18% Similarity=0.295 Sum_probs=130.5
Q ss_pred hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
..++++||+|.|+. +|+++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~i 419 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKP-GQKVALVGPTGSGKTTIVNLLMRFYD------------VDRGQILVDGIDI 419 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCT-TCEEEEECCTTSSTTHHHHHHTTSSC------------CSEEEEEETTEEG
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCcC------------CCCeEEEECCEEh
Confidence 45899999999964 79999999998 99999999999999999999999997 66666 789988
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~ 193 (286)
...+...++..+ .|+..+.+..+..|+ ...+.+++.++ ++.|.+ .+++||+||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred hhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 877877777654 333322222222221 01222233322 223333 356899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++.. ..||+|+++++|++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-------~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI-------KNADLIIVLRDGEI 567 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH-------HHCSEEEEECSSSE
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-------HcCCEEEEEECCEE
Confidence 9999999999999888 7777777887777653 345778889999884 56999999998875
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.84 E-value=2.1e-23 Score=177.37 Aligned_cols=175 Identities=19% Similarity=0.245 Sum_probs=120.5
Q ss_pred HHHhHhHHHHh--cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASL--GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~--~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.|+++||++.| +. +|+++++.+++ |++++|+||||||||||+++|+|++. |.+|+ ++|.++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQ-GEVIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEET
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEh
Confidence 36788999999 33 68999999998 99999999999999999999999987 55665 677766
Q ss_pred eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH---------Hhc-----------CCcEEEEeCHHH
Q 043263 141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY---------MAK-----------GYDIVLRVDIQG 193 (286)
Q Consensus 141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~---------~~~-----------g~~~v~~~~~q~ 193 (286)
...+...++..+ .+...+....+..++ .....+.+.++ +.. ....+++|++||
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qR 153 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 153 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHH
T ss_pred hhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHH
Confidence 444444444332 222111111222111 01222222222 111 124688899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++. ...||+|+++++|++
T Consensus 154 v~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~-------~~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST-------VKNADRIIVMEKGKI 221 (247)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG-------GTTSSEEEEEETTEE
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH-------HHhCCEEEEEECCEE
Confidence 9999999988888888 7877777777766653 23466777898775 456999999998865
No 28
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.83 E-value=1.8e-19 Score=174.68 Aligned_cols=189 Identities=22% Similarity=0.324 Sum_probs=159.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELL 158 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~ 158 (286)
+..|....+..+..|+|+||+ |+||++.|...++ .+.+++.+|||+|+.|+.+|.+|+|+ +.++|..++.++.|+
T Consensus 520 Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~fl 596 (721)
T 2xkx_A 520 YETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFI 596 (721)
T ss_pred ceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCce
Confidence 444544444457899999994 9999999988775 58899999999999999999999999 999999999999999
Q ss_pred hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHH
Q 043263 159 EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIA 238 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~ 238 (286)
++..+++++||++.+.+++++++|..++++++.+.+..++..- ..+++||+.+++.+.+.+ |..|+ +...+..|+.
T Consensus 597 E~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~-~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~ 672 (721)
T 2xkx_A 597 EAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFD 672 (721)
T ss_pred EEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcc-cCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHH
Confidence 9999999999999999999999999999999998877776432 235999999999988876 77665 5567888888
Q ss_pred HHHH-HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 239 TARE-EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 239 ~~~~-~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.+.. +..+...+|.+|+|++ +++++++|.++|...+.+
T Consensus 673 ~a~~~e~~~~~~fd~vi~Nd~--l~~a~~~l~~~i~~~~~~ 711 (721)
T 2xkx_A 673 RATKLEQEFTECFSAIVEGDS--FEEIYHKVKRVIEDLSGP 711 (721)
T ss_pred HHHHHHHhccccCcEEEECcC--HHHHHHHHHHHHHhccCC
Confidence 8753 5555678999998875 999999999999876543
No 29
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.83 E-value=2.3e-23 Score=197.62 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=129.7
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|+. +|+++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEK-GETVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEECCEE
Confidence 45899999999963 68999999998 99999999999999999999999997 66666 78988
Q ss_pred eeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHHH------------hcCCc--------EEEEeCHH
Q 043263 140 YFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREYM------------AKGYD--------IVLRVDIQ 192 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~~------------~~g~~--------~v~~~~~q 192 (286)
+...+...++..+ .|+..+.+.++..|+ .....+++.+++ +.|.+ .+++||+|
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 8777777776654 333332222222221 112233333332 22322 46678999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++. ...||+|+++++|++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~-------~~~~d~i~~l~~G~i 553 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST-------ITHADKIVVIENGHI 553 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-------TTTCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence 99999999999999888 7777677777776653 33477778999987 577999999999875
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=3.6e-23 Score=176.71 Aligned_cols=175 Identities=12% Similarity=0.145 Sum_probs=117.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |.+|+ ++|.++..
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Gei~~l~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEE-GEIFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVFGKNVVE 81 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEETTT
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCc
Confidence 3788999999975 79999999998 99999999999999999999999987 55555 56655422
Q ss_pred eCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263 143 VSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRR 199 (286)
Q Consensus 143 ~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iara 199 (286)
....++..+ ++..+ .++..+....++... +.+.+++ ......+++|++||+++|++
T Consensus 82 -~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 82 -EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp -CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred -cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 222222211 11111 122211111122221 1223332 22234577899999999999
Q ss_pred HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~------~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV------EFLCDRIALIHNGTI 224 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH------TTTCSEEEEEETTEE
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHHCCEEEEEECCEE
Confidence 9988888877 7776666776666543 244667779988875 467999999998865
No 31
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.83 E-value=4.4e-23 Score=195.90 Aligned_cols=175 Identities=22% Similarity=0.266 Sum_probs=129.7
Q ss_pred hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
..++++||+|.|+. +++++++.+++ |++++|+|||||||||++++|+|+++ |.+|+ ++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~-G~~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPA-GKTVALVGRSGSGKSTIASLITRFYD------------IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECT-TCEEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhhccC------------CCCCeEEECCEE
Confidence 35899999999972 68999999998 99999999999999999999999987 66666 78888
Q ss_pred eeeeCHHHHHHHh---hccch------hhhheecccccCccHHHHHHHHh------------cC--------CcEEEEeC
Q 043263 140 YFFVSKEEFLQMV---DKNEL------LEYALVYGDYKGIPKKQIREYMA------------KG--------YDIVLRVD 190 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~~~~~~~~i~~~~~------------~g--------~~~v~~~~ 190 (286)
+...+...++..+ .|+.. .++.. ++.....+.+++.++++ +| ...+++|+
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIA-YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH-TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred ccccCHHHHHhhCeEEccCCcCCCCCHHHHHh-ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 7666666666543 33322 22222 22111233444444322 12 23467899
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++. ...||+|+++++|++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i 556 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST-------IEQADEIVVVEDGII 556 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG-------TTTCSEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH-------HHhCCEEEEEECCEE
Confidence 9999999999999999888 8888788887777653 34477788999887 578999999999875
No 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=4e-23 Score=173.28 Aligned_cols=174 Identities=12% Similarity=0.124 Sum_probs=117.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++|+++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++...
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKK-GEFVSIIGASGSGKSTLLYILGLLDA------------PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEEECTTSCHHHHHHHHTTSSC------------CSEEEEEETTEECCSS
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCCC
Confidence 678899999975 78999999998 99999999999999999999999987 55665 677766544
Q ss_pred CHHH---HH-HHh----hccchhhhheeccc------ccCcc----HHHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263 144 SKEE---FL-QMV----DKNELLEYALVYGD------YKGIP----KKQIREYMA---------KGYDIVLRVDIQGART 196 (286)
Q Consensus 144 ~~~~---~~-~~i----~~~~~~~~~~~~~~------~~~~~----~~~i~~~~~---------~g~~~v~~~~~q~v~i 196 (286)
+... ++ ..+ ++..+..+..+..+ .++.. .+.+.++++ .....+++|++||+++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 4332 22 211 22222111111111 11222 122333322 1223577899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++. ...||+|+++++|++
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-------~~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-------AELTHRTLEMKDGKV 217 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-------HTTSSEEEEEETTEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHhCCEEEEEECCEE
Confidence 9999988888777 6766666666655542 24467777898765 367999999998864
No 33
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=5e-23 Score=176.38 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=118.4
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF- 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~- 141 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~-Gei~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~i~~ 90 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIRE-GEVVVVIGPSGSGKSTFLRCLNLLED------------FDEGEIIIDGINLKA 90 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEESSS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCEECCC
Confidence 4789999999976 79999999998 99999999999999999999999987 55555 5676553
Q ss_pred -eeCHHHHHHHh---hc-cch------hhhheecc-cccCccH----HHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263 142 -FVSKEEFLQMV---DK-NEL------LEYALVYG-DYKGIPK----KQIREYMA---------KGYDIVLRVDIQGART 196 (286)
Q Consensus 142 -~~~~~~~~~~i---~~-~~~------~~~~~~~~-~~~~~~~----~~i~~~~~---------~g~~~v~~~~~q~v~i 196 (286)
......++..+ .| ..+ .++..+.. ..++... +.+.++++ .....+++|++||+++
T Consensus 91 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 91 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp TTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred ccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 11222333222 22 222 12221111 1112221 22333322 2224577899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA------REVGDRVLFMDGGYI 237 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 9999988888777 6766666666666542 244677779988875 357999999998865
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.3e-22 Score=182.44 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=121.3
Q ss_pred HHHhHhHHHHh--cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee
Q 043263 67 IELLRSLEASL--GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~--~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~ 142 (286)
.++++||++.| +. +|+++++.+.+ |++++|+||||||||||+++|+|++. ..+.+. ++|.++..
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~----------i~G~~i~~ 86 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISP-GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ----------IDGVSWDS 86 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE----------ESSCBTTS
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcC-CCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE----------ECCEECCc
Confidence 48899999999 43 79999999998 99999999999999999999999875 444444 67777766
Q ss_pred eCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH---------hcCCcE-----------EEEeCHHHHHH
Q 043263 143 VSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM---------AKGYDI-----------VLRVDIQGART 196 (286)
Q Consensus 143 ~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~---------~~g~~~-----------v~~~~~q~v~i 196 (286)
.+...++..+ .|...+....+..|+. ....+.+.+++ ...... +++|++||+++
T Consensus 87 ~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 87 ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp SCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred CChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 6665554432 2322211112222211 12233333332 211122 78899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+++.+|+++|| ||+.....+.+.|.+. .+.+...++|+++. ...||+|+++++|++
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~-------~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA-------MLECDQFLVIEENKV 231 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGG-------GTTCSEEEEEETTEE
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHH-------HHhCCEEEEEECCEE
Confidence 9999988888877 6776666666666653 23466777887654 467999999999875
No 35
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.82 E-value=4.5e-23 Score=196.31 Aligned_cols=175 Identities=21% Similarity=0.305 Sum_probs=129.1
Q ss_pred hH-HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 66 KI-ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 66 ~~-i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
.. ++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|+|+++ |.+|+ ++|
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~-G~~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~~g 405 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPS-GSVTALVGPSGSGKSTVLSLLLRLYD------------PASGTISLDG 405 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECT-TCEEEEECCTTSSSTHHHHHHTTSSC------------CSEEEEEETT
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCcEEEECC
Confidence 35 889999999963 68999999998 99999999999999999999999987 66666 788
Q ss_pred cceeeeCHHHHHHHh---hccch------hhhheeccccc--CccHHHHHHHHh------------cCC--------cEE
Q 043263 138 KDYFFVSKEEFLQMV---DKNEL------LEYALVYGDYK--GIPKKQIREYMA------------KGY--------DIV 186 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~~--~~~~~~i~~~~~------------~g~--------~~v 186 (286)
.++...+...++..+ .|+.. .+|. .++... ....+.+.++++ +|. ..+
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI-AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSSBHHHHH-HTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred EEhhhCCHHHHHhceEEEccCCcccCCCHHHHH-hhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 887666666665543 33322 2222 222111 134444444322 122 457
Q ss_pred EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
++|++||+++||+++.+|+++|+ ||+.++..+.+.+.+. .+.|...++|+++.. ..||+|+++++|
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-------~~~d~i~~l~~G 557 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI-------KNANMVAVLDQG 557 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHH-------HHSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-------HcCCEEEEEECC
Confidence 78999999999999999999888 8887788887777653 244777889999873 569999999988
Q ss_pred CH
Q 043263 260 KL 261 (286)
Q Consensus 260 ~i 261 (286)
++
T Consensus 558 ~i 559 (595)
T 2yl4_A 558 KI 559 (595)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 36
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.82 E-value=9.3e-23 Score=175.67 Aligned_cols=174 Identities=14% Similarity=0.188 Sum_probs=119.8
Q ss_pred HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263 67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD 139 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~ 139 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.+
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~ 82 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYP-GKVTALVGPNGSGKSTVAALLQNLYQ------------PTGGKVLLDGEP 82 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECCEE
Confidence 4788999999963 68999999998 99999999999999999999999987 55665 67877
Q ss_pred eeeeCHHHHHHHh---hcc-ch-----hhhheecccccCccHHHH---------HHHHh-----------cCCcEEEEeC
Q 043263 140 YFFVSKEEFLQMV---DKN-EL-----LEYALVYGDYKGIPKKQI---------REYMA-----------KGYDIVLRVD 190 (286)
Q Consensus 140 ~~~~~~~~~~~~i---~~~-~~-----~~~~~~~~~~~~~~~~~i---------~~~~~-----------~g~~~v~~~~ 190 (286)
+...+...++..+ .+. .+ .++..+....+. ..+.+ .+.+. .....+++|+
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq 161 (271)
T 2ixe_A 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ 161 (271)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred cccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence 6544444444332 222 11 222211111111 10111 11111 1123467889
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ..||+|+++++|++
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~-------~~~d~v~~l~~G~i 234 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA-------ERAHHILFLKEGSV 234 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH-------TTCSEEEEEETTEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence 9999999999988888888 77777777777776542 34667779988763 45999999998865
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.82 E-value=4.8e-23 Score=174.92 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=114.0
Q ss_pred HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
++++||++.| +. +|+++++.+++ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 68 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQP-NSIIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDGQPIDN 68 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECT-TEEEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETTEESTT
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEhhh
Confidence 4567889999 43 78999999998 99999999999999999999999987 55555 45544321
Q ss_pred eCHHHHHHH---hhcc------chhhhheecccccCccHHHHHHHHhc--------------------CCcEEEEeCHHH
Q 043263 143 VSKEEFLQM---VDKN------ELLEYALVYGDYKGIPKKQIREYMAK--------------------GYDIVLRVDIQG 193 (286)
Q Consensus 143 ~~~~~~~~~---i~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------g~~~v~~~~~q~ 193 (286)
.+...++.. +.+. ...++..+... .....+.+.+++.. ....+++|++||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred CCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 111111111 1111 12222222101 11223333333211 123677899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++||+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-------~~~d~v~~l~~G~i 215 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-------VDADKIYFIEKGQI 215 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHH-------HHCSEEEEEETTEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-------HhCCEEEEEECCEE
Confidence 9999999989988888 7887777777776653 234667779988763 45999999988865
No 38
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=6.1e-23 Score=173.92 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=118.5
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+++ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPR-GQIVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECTT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCC
Confidence 3678899999976 78999999998 99999999999999999999999987 55555 66766543
Q ss_pred eCHHHHHHH-h---hcc-ch------hhhheeccccc-Ccc--HHHHHHH------H----hcCCcEEEEeCHHHHHHHH
Q 043263 143 VSKEEFLQM-V---DKN-EL------LEYALVYGDYK-GIP--KKQIREY------M----AKGYDIVLRVDIQGARTLR 198 (286)
Q Consensus 143 ~~~~~~~~~-i---~~~-~~------~~~~~~~~~~~-~~~--~~~i~~~------~----~~g~~~v~~~~~q~v~iar 198 (286)
.+....... + .+. .+ .++..+..... ... .+.+.+. + .+....+++|++||+++||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 333332211 1 221 11 22222111000 001 1122222 1 1223457789999999999
Q ss_pred HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~i 217 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA------LKVAHYGYVLETGQI 217 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 99988888888 7777677777666543 344777789988764 367999999998865
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=1.6e-22 Score=180.84 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=115.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|.++...+.
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~----------i~g~~i~~~~~ 80 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKD-GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY----------FGDRDVTYLPP 80 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTSCG
T ss_pred EEEEEEEEEECCEEEEeeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCceEEE----------ECCEECCCCCh
Confidence 788999999986 78999999998 999999999999999999999999873333333 45554422211
Q ss_pred HH--HHHHhhcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263 146 EE--FLQMVDKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDS 204 (286)
Q Consensus 146 ~~--~~~~i~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~ 204 (286)
.. +....++. ...++..+....++...+ .+.+++ .+....+++|++||+++||+++.+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 10 00000111 222222221112222222 233332 2233568899999999999999888
Q ss_pred cEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 205 AVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 205 ~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i 220 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA------MTMGDRIAVMNRGQL 220 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 88777 666666666655543 2244777789988875 367999999999865
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.81 E-value=2.9e-23 Score=184.99 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=116.2
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +++++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.++...
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~~~ 70 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKD-GEFMALLGPSGSGKSTLLYTIAGIYK------------PTSGKIYFDEKDVTEL 70 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTS
T ss_pred EEEEeEEEEECCEEEEEeeEEEECC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCceEEEECCEECCcC
Confidence 667899999976 68999999998 99999999999999999999999987 44554 556554322
Q ss_pred CHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHHHh---------cCCcEEEEeCHHHHHHHHHHhC
Q 043263 144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREYMA---------KGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~~~---------~g~~~v~~~~~q~v~iaral~~ 202 (286)
+... +....++..+..+..+..| .++...+ .+.++++ +....+++|++||+++||+++.
T Consensus 71 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp CGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred CHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2110 0000122222222222222 1122222 2333321 2234577899999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i 212 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA------LAMADRIAVIREGEI 212 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 8888887 777666666665543 2244777789988775 368999999999865
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.81 E-value=1.1e-22 Score=174.29 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=117.6
Q ss_pred HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263 67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~ 141 (286)
.++++||++.|+. +|+++++.+++ |++++|+||||||||||+++|+|++.. .+.+. ++|.++.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~----------i~g~~i~ 84 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPS-GTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK----------IGGKNVN 84 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE----------ETTEEGG
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECC-CCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE----------ECCEEhh
Confidence 4788999999963 68899999998 999999999999999999999999752 33333 5676654
Q ss_pred eeCHHHHHHHh---hcc-ch-----hhhheecccccCccHHHHHHHHh--------------------cCCcEEEEeCHH
Q 043263 142 FVSKEEFLQMV---DKN-EL-----LEYALVYGDYKGIPKKQIREYMA--------------------KGYDIVLRVDIQ 192 (286)
Q Consensus 142 ~~~~~~~~~~i---~~~-~~-----~~~~~~~~~~~~~~~~~i~~~~~--------------------~g~~~v~~~~~q 192 (286)
..+...++..+ .+. .+ .++.. ++.. ....+.+.+++. +....+++|++|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~-~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkq 162 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFNETIKYNIL-YGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQ 162 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCSEEHHHHHH-TTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHH
T ss_pred hcCHHHHhccEEEEcCCCcccccCHHHHHh-ccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHH
Confidence 44444443322 222 11 22221 1111 112223322211 112457789999
Q ss_pred HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+++||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++. ...||+|+++++|++
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~-------~~~~d~i~~l~~G~i 231 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST-------ISSAESIILLNKGKI 231 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-------STTCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH-------HHhCCEEEEEECCEE
Confidence 99999999988888888 77776777777666532 3466677898765 456999999998865
No 42
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.81 E-value=7.6e-23 Score=182.14 Aligned_cols=175 Identities=19% Similarity=0.174 Sum_probs=115.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.++...
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~~~ 70 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKD-GEFVALLGPSGCGKTTTLLMLAGIYK------------PTSGEIYFDDVLVNDI 70 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTS
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcC-CCEEEEEcCCCchHHHHHHHHHCCCC------------CCccEEEECCEECCCC
Confidence 567899999976 68999999998 99999999999999999999999987 44554 556554322
Q ss_pred CHHH--HHHHhhccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263 144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~ 202 (286)
+... +....++..+..+..+..| .++... +.+.+++ .+....+++|++||+++||+++.
T Consensus 71 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 71 PPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp CGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 2110 0001122222222111111 122221 1233332 22234677899999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~------~~~adri~vl~~G~i 212 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA------MTMASRIAVFNQGKL 212 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence 8888777 666666666655543 2244777789988875 367999999998865
No 43
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.81 E-value=1.4e-22 Score=173.31 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=117.7
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNK-GDVTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENKDITN 73 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECTT
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCC
Confidence 3788999999986 79999999998 99999999999999999999999987 55555 66766543
Q ss_pred eCHH-HHHHHh---hc-cch------hhhheecccc--cC-----------cc----HHHHHHHHh---------cCCcE
Q 043263 143 VSKE-EFLQMV---DK-NEL------LEYALVYGDY--KG-----------IP----KKQIREYMA---------KGYDI 185 (286)
Q Consensus 143 ~~~~-~~~~~i---~~-~~~------~~~~~~~~~~--~~-----------~~----~~~i~~~~~---------~g~~~ 185 (286)
.+.. .++..+ .| ..+ .++..+.... ++ .. .+.+.+.++ +....
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 153 (257)
T 1g6h_A 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153 (257)
T ss_dssp CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh
Confidence 3322 222211 22 112 2222111111 11 11 122333322 12235
Q ss_pred EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
+++|++||+++|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV------LNYIDHLYVMF 227 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT------GGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEE
Confidence 778999999999999988888777 7776666666666542 244667778887763 36799999999
Q ss_pred CCCH
Q 043263 258 EGKL 261 (286)
Q Consensus 258 ~G~i 261 (286)
+|++
T Consensus 228 ~G~i 231 (257)
T 1g6h_A 228 NGQI 231 (257)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 8865
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=3.5e-22 Score=204.16 Aligned_cols=177 Identities=15% Similarity=0.224 Sum_probs=133.0
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
...++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|.|+++ |.+|+ ++|
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~-G~~~~ivG~sGsGKSTl~~ll~g~~~------------~~~G~i~i~g 451 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKS-GQTVALVGNSGCGKSTTVQLMQRLYD------------PLDGMVSIDG 451 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECT-TCEEEEECCSSSSHHHHHHHTTTSSC------------CSEEEEEETT
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECC
Confidence 346899999999963 68999999998 99999999999999999999999997 66666 889
Q ss_pred cceeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeC
Q 043263 138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVD 190 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~ 190 (286)
.++...+...++..+ .|+..+.+..+..|+ .....+++.++ ++.|.+ .+++||
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 531 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHH
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHH
Confidence 998888888877754 444332222222221 01233333332 233333 466789
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++||+++.+|+++|+ ||+.++..+.+.+... .+.|...|+||++. +..||+|+++++|++
T Consensus 532 ~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~-------i~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST-------VRNADVIAGFDGGVI 602 (1284)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH-------HTTCSEEEECSSSCC
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence 9999999999999999988 7777677776666543 34578888999998 467999999999976
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.81 E-value=3.3e-22 Score=171.49 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=118.2
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~ 72 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQNINL 72 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECCE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEccc
Confidence 3778999999976 79999999998 99999999999999999999999987 55565 67766531
Q ss_pred ----------eCHH---HHHHHh---hc-cch------hhhheecc-cccCccH----HHHHHH----------HhcCCc
Q 043263 143 ----------VSKE---EFLQMV---DK-NEL------LEYALVYG-DYKGIPK----KQIREY----------MAKGYD 184 (286)
Q Consensus 143 ----------~~~~---~~~~~i---~~-~~~------~~~~~~~~-~~~~~~~----~~i~~~----------~~~g~~ 184 (286)
.+.. .++..+ .+ ..+ .++..+.. ..++... +.+.++ ......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 73 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred cccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 2222 222222 22 222 12221111 1112221 122222 222334
Q ss_pred EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
.+++|++||+++|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l 226 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA------RHVSSHVIFL 226 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH------HHHCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEE
Confidence 5778999999999999988888777 6666666666655442 245777889988875 3579999999
Q ss_pred CCCCH
Q 043263 257 AEGKL 261 (286)
Q Consensus 257 ~~G~i 261 (286)
++|++
T Consensus 227 ~~G~i 231 (262)
T 1b0u_A 227 HQGKI 231 (262)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 88864
No 46
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=5.4e-23 Score=184.17 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=116.7
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF- 142 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~- 142 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.++..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKD-GEFMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEEEEEG
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCcHHHHHHHHHHcCCC------------CCccEEEECCEECccc
Confidence 567899999976 78999999998 99999999999999999999999987 55555 56666543
Q ss_pred -----eCHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263 143 -----VSKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREYM---------AKGYDIVLRVDIQGART 196 (286)
Q Consensus 143 -----~~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~i 196 (286)
..... +....++..+..+..+..| .++...+ .+.+++ .+....+++|++||+++
T Consensus 71 ~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp GGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred cccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 22211 0001122222222222222 1122222 222222 22234577899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+++.+|+++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i 218 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA------MTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH------HHhCCEEEEEeCCEE
Confidence 9999988888777 666666666555543 2244777789988875 367999999998865
No 47
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=1.6e-22 Score=174.80 Aligned_cols=176 Identities=14% Similarity=0.109 Sum_probs=116.6
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF- 141 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~- 141 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.++.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~-Ge~~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAK-GDKWILYGLNGAGKTTLLNILNAYEP------------ATSGTVNLFGKMPGK 87 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTBCCC-
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCeEEEECCEEccc
Confidence 4788999999976 79999999998 99999999999999999999999987 55555 5666553
Q ss_pred -eeCHHHHHHHh---hcc---------chhhhheecc----cccCc-c---HHHHHHHHh---------cCCcEEEEeCH
Q 043263 142 -FVSKEEFLQMV---DKN---------ELLEYALVYG----DYKGI-P---KKQIREYMA---------KGYDIVLRVDI 191 (286)
Q Consensus 142 -~~~~~~~~~~i---~~~---------~~~~~~~~~~----~~~~~-~---~~~i~~~~~---------~g~~~v~~~~~ 191 (286)
..+...++..+ .+. ...++..+.. ..++. . .+.+.++++ +....+++|++
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 88 VGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEK 167 (279)
T ss_dssp --CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred ccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 22333332211 111 1222221110 00111 1 122333322 22235778999
Q ss_pred HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENR--EELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+++||+++.+|+++|+ ||+.+...+.+.|.+. .+.+. ..++|+++.. ...||+|+++++|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~------~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI------TANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC------CTTCCEEEEEETTEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence 999999999988888887 7777676776665542 14477 7778987763 368999999998865
No 48
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.80 E-value=2.3e-22 Score=178.95 Aligned_cols=175 Identities=18% Similarity=0.130 Sum_probs=117.6
Q ss_pred HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263 68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~ 141 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.++.
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIEN-GERFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECT-TCEEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEETTEEEE
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECc
Confidence 567888888874 57889999998 99999999999999999999999987 55555 5666554
Q ss_pred e-----eCHHH--HHHHhhccchhhhheecc------cccCccH----HHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263 142 F-----VSKEE--FLQMVDKNELLEYALVYG------DYKGIPK----KQIREYM---------AKGYDIVLRVDIQGAR 195 (286)
Q Consensus 142 ~-----~~~~~--~~~~i~~~~~~~~~~~~~------~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ 195 (286)
. ..... +....++..+..+..+.. ..++... +.+.+++ .+....+++|++||++
T Consensus 71 ~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred ccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 3 11110 000112222222211211 1222222 2233332 2223457789999999
Q ss_pred HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+||+++.+|+++++ ||+.....+.+.|.+. .+.+...++|+++.+ ...||+|+++++|++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~------~~~adri~vl~~G~i 219 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI------FAIADRVGVLVKGKL 219 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 99999999998888 8888777777666542 244777789988875 367999999998865
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.80 E-value=6e-23 Score=182.18 Aligned_cols=174 Identities=19% Similarity=0.199 Sum_probs=116.6
Q ss_pred HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263 68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS 144 (286)
Q Consensus 68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~ 144 (286)
++++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++. |++|+ ++|.++....
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i~~~~ 68 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVES-GEYFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKDVTDLS 68 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECT-TCEEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEeeeEEEEcC-CCEEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECCEECCCCc
Confidence 456788999986 78999999998 99999999999999999999999987 55555 5666553322
Q ss_pred HHHHHH--Hh-hccchhhhheecccc------cCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 145 KEEFLQ--MV-DKNELLEYALVYGDY------KGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 145 ~~~~~~--~i-~~~~~~~~~~~~~~~------~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
... +. ++ ++..+..+..+..|+ ++.. .+.+.+++ .+....+++|++||+++||+++.+|+
T Consensus 69 ~~~-r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 69 PEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp HHH-HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred hhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 211 11 11 222222222222221 1111 13333332 22234577899999999999998888
Q ss_pred EEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~------~~~adri~vl~~G~i 206 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA------RIMADRIAVVMDGKL 206 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHCSEEEEESSSCE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 8777 666666666665543 2244777789988775 368999999999875
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.79 E-value=5.8e-22 Score=176.04 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=115.3
Q ss_pred HHHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263 67 IELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV 143 (286)
Q Consensus 67 ~i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~ 143 (286)
.++++||++.| +. +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|.++...
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~----------i~g~~i~~~ 82 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIRE-GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW----------IGGKRVTDL 82 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTC
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE----------ECCEECCcC
Confidence 47889999999 65 68899999998 999999999999999999999999873333333 455544221
Q ss_pred CHHH--HHHHhhccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263 144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILG 202 (286)
Q Consensus 144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~ 202 (286)
.... +....++..+..+..+..| .++... +.+.+++ .+....+++|++||+++||+++.
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1110 0000111112121112111 112222 2233332 22234577899999999999998
Q ss_pred CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+++++ ||+.....+.+.|.+ ..+.+...++|+++.+ ...||+|+++++|++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i 224 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA------LEVADRVLVLHEGNV 224 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence 8888777 666666666555543 2244777789988875 367999999998865
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=1.8e-21 Score=198.92 Aligned_cols=177 Identities=18% Similarity=0.228 Sum_probs=131.9
Q ss_pred hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263 65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG 137 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g 137 (286)
...++++||+|.|+. .|+++++.+++ |+++||+||||||||||+++|.|+++ |..|+ ++|
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~-Ge~v~ivG~sGsGKSTl~~~l~g~~~------------p~~G~I~i~g 1094 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKK-GQTLALVGSSGCGKSTVVQLLERFYD------------PMAGSVFLDG 1094 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECS-SSEEEEECSSSTTHHHHHHHHTTSSC------------CSEEEEESSS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECC
Confidence 345899999999963 69999999998 99999999999999999999999997 66666 789
Q ss_pred cceeeeCHHHHHHHh---hccchhhhheecccc------cCccHHHHHHH------------HhcCCc--------EEEE
Q 043263 138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY------KGIPKKQIREY------------MAKGYD--------IVLR 188 (286)
Q Consensus 138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~------~~~~~~~i~~~------------~~~g~~--------~v~~ 188 (286)
.++...+...++..+ .|+..+....+..|+ ...+.+++.++ ++.|++ .+++
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 988777777666543 444332222222221 12333333332 233333 4667
Q ss_pred eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+||+++||+++.+|+++|+ ||+.++..+.+.|.+. .+.|...|+||++. +..||+|+++++|++
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~-------i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST-------IQNADLIVVIQNGKV 1247 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG-------GGSCSEEEEEETBEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence 899999999999999999888 7877777777777653 34588888999998 567999999999875
No 52
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.78 E-value=7.5e-22 Score=168.20 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=109.6
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc--cCcceeeeeecccCCCCCCcCCcceeee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGEVNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~--~~~~~~~i~~~~r~~~~G~~~g~~~~~~ 143 (286)
++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|+ +.+..+.+. ++|.++...
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~----------~~g~~~~~~ 72 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPK-GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL----------LDGENILEL 72 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE----------ETTEECTTS
T ss_pred EEEEeEEEEECCEEEEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE----------ECCEECCCC
Confidence 567899999975 79999999998 999999999999999999999997 542333333 566555433
Q ss_pred CHHHHHH----Hhhcc-chh------hhheecc-cccC--cc----HHHHHHHH----------hcCCcE-EEEeCHHHH
Q 043263 144 SKEEFLQ----MVDKN-ELL------EYALVYG-DYKG--IP----KKQIREYM----------AKGYDI-VLRVDIQGA 194 (286)
Q Consensus 144 ~~~~~~~----~i~~~-~~~------~~~~~~~-~~~~--~~----~~~i~~~~----------~~g~~~-v~~~~~q~v 194 (286)
+...... .+.+. .+. ++..+.. ...+ .. .+.+.+++ ...... +++|++||+
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 3332211 11221 111 1111100 0001 11 11222221 112235 999999999
Q ss_pred HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCCCH
Q 043263 195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAEGKL 261 (286)
Q Consensus 195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G~i 261 (286)
++||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ... ||+|+++++|++
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~------~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL------NYIQPDKVHVMMDGRV 222 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG------GTSCCSEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhcCCEEEEEECCEE
Confidence 999999988888887 77766777777666532 34667778987653 245 599999988865
No 53
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=2.2e-22 Score=170.15 Aligned_cols=172 Identities=15% Similarity=0.241 Sum_probs=109.2
Q ss_pred HHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263 68 ELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV 143 (286)
Q Consensus 68 i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~ 143 (286)
++++||++.|+ . +|+++++.+.+ |++++|+||||||||||+++|+|++++..+.+. ++|. +.++
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------~~g~-i~~v 71 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPE-GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA----------IKGS-VAYV 71 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE----------ECSC-EEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----------ECCE-EEEE
Confidence 56789999996 2 78999999998 999999999999999999999999874444433 3331 2222
Q ss_pred CHHHHHHHhhccchhhhheecccccCccHHHHHHH------H-----------hcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY------M-----------AKGYDIVLRVDIQGARTLRRILGDSAV 206 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~------~-----------~~g~~~v~~~~~q~v~iaral~~~~~~ 206 (286)
.+.. .+......++..+.........+.+.+. + .+....+++|++||+++||+++.+|++
T Consensus 72 ~Q~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 72 PQQA---WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp CSSC---CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCC---cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 1110 0011112222211111111111111111 1 122346778999999999999988888
Q ss_pred EEE------EecCCHHHHHHHHH---H-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 207 FVF------LAAESEMALVERLV---E-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 207 ~Il------ld~~~~~~l~~rl~---~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+|+ ||+.+...+.+.+. + ..+.+...++|+++. ...||+|+++++|++
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~-------~~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY-------LPQVDVIIVMSGGKI 206 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT-------GGGSSEEEEEETTEE
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH-------HHhCCEEEEEeCCEE
Confidence 877 66666667777663 2 123366667887765 356999999998865
No 54
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.78 E-value=7.4e-22 Score=167.85 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=115.4
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK 145 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~ 145 (286)
++++||++. .+|+++++.+.+ |++++|+||||||||||+++|+|++. |. |+ ++|.++...+.
T Consensus 5 l~~~~l~~~--~vl~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~l~Gl~~------------p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 5 MQLQDVAES--TRLGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMTS------------GK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEET--TTEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CE-EEEEETTEEGGGSCH
T ss_pred EEEEceEEE--EEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CC-eEEEECCEECCcCCH
Confidence 456667666 468888888887 99999999999999999999999987 55 55 67776544444
Q ss_pred HHHHHHh---hc-cch------hhhheecccccCccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCc-
Q 043263 146 EEFLQMV---DK-NEL------LEYALVYGDYKGIPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSA- 205 (286)
Q Consensus 146 ~~~~~~i---~~-~~~------~~~~~~~~~~~~~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~- 205 (286)
..++..+ .+ ..+ .++..+ +..+....+.+.++++ .....+++|++||+.+|++++.+|+
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTL-HQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHT-TCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHH-hhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc
Confidence 4444332 22 211 222211 1111112333444432 2234577899999999999998888
Q ss_pred ------EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 ------VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ------~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+++++++|++
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~------~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT------LRHAHRAWLLKGGKM 211 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 7777 7777677777766543 244677779988874 367999999988865
No 55
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.76 E-value=2.6e-21 Score=166.30 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=112.8
Q ss_pred HHhHhHHHHhc--c-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263 68 ELLRSLEASLG--H-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK 138 (286)
Q Consensus 68 i~~~~v~~~~~--~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~ 138 (286)
++++||++.|+ . +|+++++.+.+ |++++|+||||||||||+++|+|++. |..|+ ++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~I~~~g~ 69 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINE-GECLLVAGNTGSGKSTLLQIVAGLIE------------PTSGDVLYDGE 69 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCE
Confidence 45678888885 2 68899999998 99999999999999999999999987 55555 5665
Q ss_pred ceeeeCHHHHHHHh---hcc--------chhhhheeccccc---CccHHHHHHHHh-----------cCCcEEEEeCHHH
Q 043263 139 DYFFVSKEEFLQMV---DKN--------ELLEYALVYGDYK---GIPKKQIREYMA-----------KGYDIVLRVDIQG 193 (286)
Q Consensus 139 ~~~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~---~~~~~~i~~~~~-----------~g~~~v~~~~~q~ 193 (286)
++.. ..++..+ .+. ...++..+....+ ....+.+.++++ .....+++|++||
T Consensus 70 ~~~~---~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qR 146 (266)
T 2yz2_A 70 RKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR 146 (266)
T ss_dssp ECCH---HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHH
T ss_pred ECch---HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHH
Confidence 4421 1122111 121 1112221111110 111222333322 2223577899999
Q ss_pred HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+++|++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~------~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV------INHVDRVVVLEKGKK 216 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT------GGGCSEEEEEETTEE
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 9999999988888888 7777777777766543 244677778877663 356999999988865
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.76 E-value=3.9e-21 Score=162.56 Aligned_cols=176 Identities=15% Similarity=0.062 Sum_probs=111.8
Q ss_pred HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH-
Q 043263 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE- 146 (286)
Q Consensus 68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~- 146 (286)
++++||++.|+..++++++.+.+ ++++|+||||||||||+++|+|++.+..+.+. ++|.++......
T Consensus 2 l~~~~l~~~y~~~l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~----------~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGNFRLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR----------LNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEETTEEEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTSCTTT
T ss_pred EEEEEEEEEeCCEEeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCchhh
Confidence 45678888887678888888885 89999999999999999999999874444443 344332110000
Q ss_pred -HHHHHhhcc------chhhhheecccccCcc--HHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263 147 -EFLQMVDKN------ELLEYALVYGDYKGIP--KKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVFV 208 (286)
Q Consensus 147 -~~~~~i~~~------~~~~~~~~~~~~~~~~--~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~I 208 (286)
.+....++. ...++..+....++.. .+.+.++++ +....+++|++||+++|++++.+|+++|
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 000000111 1112211111111111 223333332 1224577899999999999998998888
Q ss_pred E------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 209 F------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 209 l------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++|++
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA------AMLADEVAVMLNGRI 205 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence 8 7777777777666542 245777789988764 367999999998865
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.75 E-value=2.4e-21 Score=166.58 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=115.3
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcce
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
.++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|+. . |..|+ ++|.++
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~------------p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHP-GEVHAIMGPNGSGKSTLSATLAGREDYE------------VTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTCTTCE------------EEEEEEEETTEEG
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCC------------CCCeEEEECCEEC
Confidence 4789999999975 79999999998 9999999999999999999999983 3 33444 566665
Q ss_pred eeeCHHHHHHH----hhcc-chh------hhheecc-cc---cC---ccH----HHHHHHHh---------cCC-c-EEE
Q 043263 141 FFVSKEEFLQM----VDKN-ELL------EYALVYG-DY---KG---IPK----KQIREYMA---------KGY-D-IVL 187 (286)
Q Consensus 141 ~~~~~~~~~~~----i~~~-~~~------~~~~~~~-~~---~~---~~~----~~i~~~~~---------~g~-~-~v~ 187 (286)
...+....... +.+. .+. ++..... +. ++ ... +.+.++++ ... . .++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS 166 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCC
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCC
Confidence 44343332111 1222 111 1110000 00 01 111 12233221 111 2 388
Q ss_pred EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCC
Q 043263 188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAE 258 (286)
Q Consensus 188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~ 258 (286)
+|++||+++||+++.+|+++|+ ||+.+...+.+.|.+.. +.+...++|+++.. ... ||+|+++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~------~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL------DYIKPDYVHVLYQ 240 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG------GTSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH------HhhcCCEEEEEEC
Confidence 8999999999999988888888 77777777777776542 34666778877653 244 899999998
Q ss_pred CCH
Q 043263 259 GKL 261 (286)
Q Consensus 259 G~i 261 (286)
|++
T Consensus 241 G~i 243 (267)
T 2zu0_C 241 GRI 243 (267)
T ss_dssp TEE
T ss_pred CEE
Confidence 875
No 58
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=3.1e-21 Score=164.53 Aligned_cols=173 Identities=12% Similarity=0.020 Sum_probs=111.1
Q ss_pred HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263 68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS 144 (286)
Q Consensus 68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~ 144 (286)
++++||++.|+ . +|+++++.+.+ |++++|+||||||||||+++|+|++.+..+.+.. ....|.+......+
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~-- 78 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNK-GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSP-- 78 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEET-TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCS--
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccC--
Confidence 67889999997 5 78999999998 9999999999999999999999998755444431 00111111111000
Q ss_pred HHHHHHHhhccchhhhheeccc----c----cCccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263 145 KEEFLQMVDKNELLEYALVYGD----Y----KGIPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVF 207 (286)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~----~----~~~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~ 207 (286)
......++..+... . .....+.+.++++ .....+++|++||+++|++++.+|+++
T Consensus 79 --------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 79 --------FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp --------SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred --------CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 00011111111000 0 0001122333322 223457789999999999999888888
Q ss_pred EE------EecCCHHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263 208 VF------LAAESEMALVERLVER--K-TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260 (286)
Q Consensus 208 Il------ld~~~~~~l~~rl~~r--~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~ 260 (286)
|+ ||+.+...+.+.|.+. . +.+...++|+++.. ...||+|+++++|+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV------VAIANKTLLLNKQN 206 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH------HHHCSEEEEEETTE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEeCCe
Confidence 88 7777777777766543 1 44677779988874 36799999998875
No 59
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.74 E-value=2.2e-21 Score=163.15 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=106.8
Q ss_pred HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee
Q 043263 67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF 142 (286)
Q Consensus 67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~ 142 (286)
.++++||++.|+ . +|+++++.+++ |++++|+||||||||||+++|+|++.+..+.+. ++|. +.+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----------~~g~-i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIER-GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------HSGR-ISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------ECSC-EEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE----------ECCE-EEE
Confidence 477889999994 2 78999999998 999999999999999999999999874443333 3331 211
Q ss_pred eCHHHHHHHhhccchhhhheecccccCccHHH------HHHHHhc-----------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ------IREYMAK-----------GYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~-----------g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
+.+.. .... ....++..+........... +.+.+.. ....+++|++||+++||+++.+|+
T Consensus 74 v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 74 CSQFS--WIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp ECSSC--CCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EecCC--cccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 11110 0000 11111111100000000000 0111111 124577899999999999998888
Q ss_pred EEEE------EecCCHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 206 VFVF------LAAESEMALVERL-VER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl-~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
++|+ ||+.+...+.+.+ .+. .+.+...++|+++.. ..||+|+++++|++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~-------~~~d~v~~l~~G~i 207 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS 207 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-------HHCSEEEEEETTEE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH-------HhCCEEEEEECCEE
Confidence 8877 6666666666653 222 233666778987763 35999999998865
No 60
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.72 E-value=1.2e-21 Score=162.88 Aligned_cols=173 Identities=13% Similarity=0.188 Sum_probs=108.6
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
.++++||++.|+. +|.++++.+.+ |++++|+||||||||||+++|+|++.+..+.+. ++|.++.
T Consensus 10 ~l~~~~ls~~y~~~il~~vsl~i~~-Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~----------~~g~~~~---- 74 (214)
T 1sgw_A 10 KLEIRDLSVGYDKPVLERITMTIEK-GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII----------YNGVPIT---- 74 (214)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEET-TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------ETTEEGG----
T ss_pred eEEEEEEEEEeCCeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE----------ECCEEhh----
Confidence 4788899999975 78899999998 999999999999999999999999873333333 4554431
Q ss_pred HHHHHH---h-hcc------chhhhheecccccC--ccHHHHHHHHhc--------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263 146 EEFLQM---V-DKN------ELLEYALVYGDYKG--IPKKQIREYMAK--------GYDIVLRVDIQGARTLRRILGDSA 205 (286)
Q Consensus 146 ~~~~~~---i-~~~------~~~~~~~~~~~~~~--~~~~~i~~~~~~--------g~~~v~~~~~q~v~iaral~~~~~ 205 (286)
.++.. + ++. ...++..+....++ ...+.+.++++. ....+++|++||+.+|++++.+|+
T Consensus 75 -~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ 153 (214)
T 1sgw_A 75 -KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAE 153 (214)
T ss_dssp -GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred -hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 01110 0 111 11122111101111 112333333321 123467889999999999999999
Q ss_pred EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
++|+ ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|++.. |.++
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~------~~~~d~v~~~~-~~~~ 211 (214)
T 1sgw_A 154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY------CDVNENLHKYS-TKID 211 (214)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT------SSEEEEGGGGB-C---
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEeC-Cccc
Confidence 8888 8888888777766543 233666667876653 35677777554 5553
No 61
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=2.7e-20 Score=159.37 Aligned_cols=179 Identities=11% Similarity=0.092 Sum_probs=111.0
Q ss_pred HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263 68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF 141 (286)
Q Consensus 68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~ 141 (286)
++++||++.|+. +|+++++.+. |++++|+||||||||||+++|+|++ +..+.+............ ...+.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~--Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN--GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC--SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC--CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheE
Confidence 356778888863 6888898887 9999999999999999999999998 666665532111000000 00111
Q ss_pred -eeCHHHHHHHhhccchhhhheecccccCccHHHHHHHHh----------cCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 142 -FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMA----------KGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 142 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
++.+.. .+ .....++..+....+....+.+.+.++ .....+++|++||+++|++++.+|+++++
T Consensus 78 ~~v~Q~~---~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 78 TNLPEAY---EI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp ECCGGGS---CT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEeCCCC---cc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 111100 00 111112211111111122223333322 12235778899999999999988888888
Q ss_pred -----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCc-EEEECCCCCH
Q 043263 210 -----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFD-YVVVNAEGKL 261 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d-~viv~~~G~i 261 (286)
||+.+...+.+.|.+... +...++|+++.. ...|| +++++++|++
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~------~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGK-EGILVTHELDML------NLYKEYKAYFLVGNRL 204 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGG------GGCTTSEEEEEETTEE
T ss_pred CCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHH------HHhcCceEEEEECCEE
Confidence 777777777777776544 666678877653 36899 9999998865
No 62
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.71 E-value=3.4e-20 Score=160.91 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=98.1
Q ss_pred hHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 66 KIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 66 ~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
..++++||++.+..+++++++.+.+ |++++|+||||||||||+++|+|++....+.+. ++|. +.++.+
T Consensus 39 ~~l~~~~l~~~~~~vl~~isl~i~~-Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~----------~~g~-i~~v~Q 106 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDINFKIER-GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------HSGR-ISFCSQ 106 (290)
T ss_dssp -----------CCCSEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE----------CCSC-EEEECS
T ss_pred ceEEEEEEEEcCceEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE----------ECCE-EEEEeC
Confidence 4589999999765589999999998 999999999999999999999999874444443 2331 111111
Q ss_pred HHHHHHhhccchhhhheecccccC-ccHHH------HHHHHhc-----------CCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263 146 EEFLQMVDKNELLEYALVYGDYKG-IPKKQ------IREYMAK-----------GYDIVLRVDIQGARTLRRILGDSAVF 207 (286)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~------i~~~~~~-----------g~~~v~~~~~q~v~iaral~~~~~~~ 207 (286)
.. .... ....++.. +..+. ..... +.+.+.. ....+++|++||+.+||+++.+|+++
T Consensus 107 ~~--~l~~-~tv~enl~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 107 NS--WIMP-GTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp SC--CCCS-SBHHHHHH--TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred CC--ccCc-ccHHHHhh--CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 00 0000 01111111 00000 00000 0111111 11457889999999999999888888
Q ss_pred EE------EecCCHHHHHHHHH-Hh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 208 VF------LAAESEMALVERLV-ER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 208 Il------ld~~~~~~l~~rl~-~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
|+ ||+.+...+.+.+. +. .+.+...++|+++.. ..||+|+++++|++
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-------~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS 236 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-------HHSSEEEEEETTEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-------HcCCEEEEEECCeE
Confidence 87 77766666666432 21 233666778987663 35999999988864
No 63
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.69 E-value=5.4e-15 Score=122.09 Aligned_cols=184 Identities=41% Similarity=0.614 Sum_probs=121.5
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecc
Q 043263 86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYG 165 (286)
Q Consensus 86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (286)
..+.+ |++++|+|||||||||++++|+++++.+.+...++++.+..+...|..+.+.+...+..+...+.+.+...+++
T Consensus 15 ~~i~~-Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 15 QPAAV-GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG 93 (207)
T ss_dssp ----C-CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCC-CCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcC
Confidence 34555 99999999999999999999999986555556666666666666778888888877776655555554444555
Q ss_pred --cccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 043263 166 --DYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE 243 (286)
Q Consensus 166 --~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~ 243 (286)
..++...+.+.+.+.++...+.+.+...+.-.+..+ ...+-+++..|+...+-+++..++......+..++.....+
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~ 172 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-PEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIE 172 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-TTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-CCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 456667767777777777777777776554444443 22344555445577887888776544445555555554444
Q ss_pred hhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 244 VQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.......+.|++.++ ++++......++-
T Consensus 173 l~~~~g~tvi~vtHd--l~~~~~~~d~i~~ 200 (207)
T 1znw_A 173 LAAQGDFDKVVVNRR--LESACAELVSLLV 200 (207)
T ss_dssp HHGGGGSSEEEECSS--HHHHHHHHHHHHC
T ss_pred HhhhccCcEEEECCC--HHHHHHHHHHHHH
Confidence 432345788888776 8777766665544
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.61 E-value=3.7e-18 Score=159.98 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=107.4
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV 143 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~ 143 (286)
.++++++++.|+. .+...++.+.+ |++++|+||||||||||+++|+|++. |..|+ +++..+.+.
T Consensus 269 ~l~~~~l~~~~~~~~l~~~~~~i~~-Gei~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~~i~~~ 335 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQLVVDNGEAKE-GEIIGILGPNGIGKTTFARILVGEIT------------ADEGSVTPEKQILSYK 335 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSBCCEESSCCCEEEE
T ss_pred eEEEcceEEEECCEEEEeccceECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCeeeEee
Confidence 4677888888876 56666777787 99999999999999999999999987 55555 344444332
Q ss_pred CHHHHHHHhhccchhhhheecc-cccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263 144 SKEEFLQMVDKNELLEYALVYG-DYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF---- 209 (286)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il---- 209 (286)
.+..+.. ......++..... .........+.++ .......+++|++||+.+||+++.+|+++|+
T Consensus 336 ~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 336 PQRIFPN--YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CSSCCCC--CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred chhcccc--cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2110000 0000111100000 0000001111111 2223356788999999999999988888777
Q ss_pred --EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 --LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 --ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+ ..+.+...++|+++.. ...||+|+++++
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~------~~~aDri~vl~~ 461 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH------DYIADRIIVFKG 461 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence 666656666655543 2344677889998875 367999999975
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.58 E-value=7.9e-17 Score=152.90 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=101.7
Q ss_pred HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-----------C
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-----------N 136 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-----------~ 136 (286)
+||++.|+. .+.+++ .+.+ |++++|+||||||||||+++|+|++. |..|++ +
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~-Ge~~~LiG~NGsGKSTLlkiL~Gll~------------p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKD-GMVVGIVGPNGTGKTTAVKILAGQLI------------PNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHTTSSC------------CCTTTTCCCHHHHHHHTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCC-CCEEEEECCCCChHHHHHHHHhCCCC------------CCCCccccccchhhheeC
Confidence 789999975 477888 7776 99999999999999999999999986 666652 2
Q ss_pred CcceeeeCHHHHHHHh-----hccc-hhhh---heecccc--c--CccHHHHHHH------HhcCCcEEEEeCHHHHHHH
Q 043263 137 GKDYFFVSKEEFLQMV-----DKNE-LLEY---ALVYGDY--K--GIPKKQIREY------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 137 g~~~~~~~~~~~~~~i-----~~~~-~~~~---~~~~~~~--~--~~~~~~i~~~------~~~g~~~v~~~~~q~v~ia 197 (286)
|.++............ .+.. .... ..+..++ . ....+++.+. +......+++|++||+++|
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence 3322110000000000 0000 0000 0000000 0 0011111111 1222345778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
++++.+|+++|| ||+.+...+.+.|.+. .+.+...++|+++.. ...||+|++++++
T Consensus 241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~------~~~adri~vl~~~ 304 (607)
T 3bk7_A 241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL------DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEESC
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH------HhhCCEEEEECCC
Confidence 999988888777 6666555565555432 244777789988864 3579999998754
No 66
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.57 E-value=2.2e-14 Score=129.24 Aligned_cols=161 Identities=12% Similarity=0.137 Sum_probs=121.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEY 160 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~ 160 (286)
+..|....+..+..|+|+||+| +||++.|...++..... ++|.|+.|+.+|.+|+|+
T Consensus 221 YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~---~tr~pR~gE~dG~~Y~Fv----------------- 277 (391)
T 3tsz_A 221 YERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI---AKSEPRDAGTDQRSSGII----------------- 277 (391)
T ss_dssp EEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE---CCCCCCCSSSCCC--CCC-----------------
T ss_pred cceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc---ccCCCCCcccCCccCCcC-----------------
Confidence 3444333344578899999998 89999998776543332 578899999999999875
Q ss_pred heecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 043263 161 ALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENREELLVRIAT 239 (286)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~~~i~~rl~~ 239 (286)
+.+.+++.+++|..++++.+.|.+..++... ..+++||+.||+.+.|.++ ..|.. .+.+.+..+++.
T Consensus 278 ----------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~~~L~~~-~~r~~~~s~e~~~~~~~~ 345 (391)
T 3tsz_A 278 ----------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTM-RMRLCPESRKSARKLYER 345 (391)
T ss_dssp ----------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECCCHHHHHHH-HHHHCSSCCCCHHHHHHH
T ss_pred ----------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCC-CCCEEEEEeCcCHHHHHHH-HhcCCCCCHHHHHHHHHH
Confidence 4677889999999999999999998888654 4569999999999999875 44432 344556666666
Q ss_pred HHH-HhhccCCCcEEEECCCCCHH-HHHHHHHHHHHHHHhc
Q 043263 240 ARE-EVQHVKNFDYVVVNAEGKLD-SAVKLVESVIDAEKAK 278 (286)
Q Consensus 240 ~~~-~~~~~~~~d~viv~~~G~i~-~~~~~l~~~i~~~~~~ 278 (286)
+.. +..+...+|.||+|++ ++ .++++|.++|..++.+
T Consensus 346 a~~~e~~~~~~fd~vivNd~--l~~~a~~~l~~ii~~~~~~ 384 (391)
T 3tsz_A 346 SHKLRKNNHHLFTTTINLNS--MNDGWYGALKEAIQQQQNQ 384 (391)
T ss_dssp HHHHHHHHGGGCSEEEECCT--TCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCcEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence 533 3445678999999987 87 6999999999988754
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.57 E-value=7.3e-17 Score=151.42 Aligned_cols=169 Identities=13% Similarity=0.088 Sum_probs=99.9
Q ss_pred HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-----------C
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-----------N 136 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-----------~ 136 (286)
+||++.|+. .+.+++ .+.+ |++++|+||||||||||+++|+|++. |..|++ +
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~-Ge~~~LvG~NGaGKSTLlk~l~Gl~~------------p~~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKE-GMVVGIVGPNGTGKSTAVKILAGQLI------------PNLCGDNDSWDGVIRAFR 90 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTCCSHHHHHHHTT
T ss_pred cCcEEEECCccccccCcC-cCCC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCccCcchhhhHHhhC
Confidence 578888975 477888 7777 99999999999999999999999886 666652 2
Q ss_pred CcceeeeCHHHHHHHh-----hcc-chhhhh---eecccc--c--CccHHHHHHH------HhcCCcEEEEeCHHHHHHH
Q 043263 137 GKDYFFVSKEEFLQMV-----DKN-ELLEYA---LVYGDY--K--GIPKKQIREY------MAKGYDIVLRVDIQGARTL 197 (286)
Q Consensus 137 g~~~~~~~~~~~~~~i-----~~~-~~~~~~---~~~~~~--~--~~~~~~i~~~------~~~g~~~v~~~~~q~v~ia 197 (286)
|.++............ .+. ...... .+..+. . ....+++.+. .......+++|++|++++|
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA 170 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA 170 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence 3322110000000000 000 000000 000000 0 0001111111 1112245778999999999
Q ss_pred HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
++++.+|+++|+ ||+.+...+.+.|.+. .+.+...++|++... ...||+|++++++
T Consensus 171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~------~~~~dri~vl~~~ 234 (538)
T 1yqt_A 171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL------DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEEE
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEcCc
Confidence 999988887777 6666555555555432 244777889988864 3579999998653
No 68
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.55 E-value=2e-14 Score=118.26 Aligned_cols=177 Identities=16% Similarity=0.151 Sum_probs=112.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccch-
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNEL- 157 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~- 157 (286)
+.-|||+|+.||||||++++|.. ++...++.....+. ...|. .+|.++. .+++..++..+..+.-
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 56799999999999999999988 43222222211111 11111 3455443 2567777766533211
Q ss_pred h--hhheecccccCccHHHHHHHHhc--CCcEEEEeCHHHH-HHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 158 L--EYALVYGDYKGIPKKQIREYMAK--GYDIVLRVDIQGA-RTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 158 ~--~~~~~~~~~~~~~~~~i~~~~~~--g~~~v~~~~~q~v-~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
. -+...++. ..+.+.+.+.. +..++++..+-.- .-...++ +.+|+++++ .+...+|+.+|.+.+.+.
T Consensus 88 ~~~L~~i~HP~----I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~---D~vi~V~ap-~e~r~~Rl~~Rdg~s~ee 159 (210)
T 4i1u_A 88 RRRLEAITHPL----IRAETEREARDAQGPYVIFVVPLLVESRNWKARC---DRVLVVDCP-VDTQIARVMQRNGFTREQ 159 (210)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHC---SEEEEEECC-HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhhHH----HHHHHHHHHHhcCCCEEEEEEecccccCCccccC---CeEEEEECC-HHHHHHHHHhcCCCCHHH
Confidence 1 11122222 12233333322 3346666653111 2223333 788999987 888889999998889999
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
+..|++.+++..++...||.||.|++|+++++.+++.+++..+..
T Consensus 160 a~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 160 VEAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 999999988877777899998865438999999999999987643
No 69
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.7e-16 Score=148.76 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=96.3
Q ss_pred HHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-------------Ccc
Q 043263 74 EASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-------------GKD 139 (286)
Q Consensus 74 ~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-------------g~~ 139 (286)
+.+||. .+.-..+..+++|+++||+||||||||||+++|+|++. |+.|++. |.+
T Consensus 6 ~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~------------p~~G~i~~~~~~~~~~~~~~g~~ 73 (538)
T 3ozx_A 6 IHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII------------PNFGDPNSKVGKDEVLKRFRGKE 73 (538)
T ss_dssp EEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC------------CCTTCTTSCCCHHHHHHHHTTST
T ss_pred ceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC------------CCCCccccccchhhHHhhcCCee
Confidence 345664 45555566666799999999999999999999999986 6666642 222
Q ss_pred eeeeCHHHHHHHhhc-------cchhhhhe--eccccc--------CccHHHHHHH------HhcCCcEEEEeCHHHHHH
Q 043263 140 YFFVSKEEFLQMVDK-------NELLEYAL--VYGDYK--------GIPKKQIREY------MAKGYDIVLRVDIQGART 196 (286)
Q Consensus 140 ~~~~~~~~~~~~i~~-------~~~~~~~~--~~~~~~--------~~~~~~i~~~------~~~g~~~v~~~~~q~v~i 196 (286)
+.. .+...... ..++.... ..+... ....+.+.+. .......+++|++|++++
T Consensus 74 i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~i 149 (538)
T 3ozx_A 74 IYN----YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLV 149 (538)
T ss_dssp THH----HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHH
T ss_pred HHH----HHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 110 00000000 00000000 000000 0011111111 122234577899999999
Q ss_pred HHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 197 LRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
|++++.+|+++|| ||+.+...+.+-|.+. .+.+...++|+++.. ...||+|+++++|
T Consensus 150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~------~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVL------DYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHH------HHHCSEEEEEEEE
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHH------HhhCCEEEEecCC
Confidence 9999988887777 6655455555555543 244777789998865 3579999998754
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.6e-16 Score=148.18 Aligned_cols=169 Identities=13% Similarity=0.241 Sum_probs=99.7
Q ss_pred HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----e
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-----F 142 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~-----~ 142 (286)
+|++++|+. .++.++ .+.+ |++++|+||||||||||+++|+|++. |..|++.+.... .
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~-Gei~~LvGpNGaGKSTLLkiL~Gll~------------P~~G~i~~~~~~~~~~~~ 146 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRP-GQVLGLVGTNGIGKSTALKILAGKQK------------PNLGRFDDPPEWQEIIKY 146 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTCCSSCHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCceEecccchhhhhhe
Confidence 467778864 234444 4554 99999999999999999999999986 777775322110 0
Q ss_pred e---CHHH-HHHHhhcc-------chhhhh--eeccc----------ccCccHHHHHHH---------HhcCCcEEEEeC
Q 043263 143 V---SKEE-FLQMVDKN-------ELLEYA--LVYGD----------YKGIPKKQIREY---------MAKGYDIVLRVD 190 (286)
Q Consensus 143 ~---~~~~-~~~~i~~~-------~~~~~~--~~~~~----------~~~~~~~~i~~~---------~~~g~~~v~~~~ 190 (286)
. .... +....... .+.++. ...+. ......+.+.+. +......+++|+
T Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGE 226 (608)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHH
T ss_pred ecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHH
Confidence 0 0000 11110000 000000 00000 000111223332 223345677899
Q ss_pred HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263 191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG 259 (286)
Q Consensus 191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G 259 (286)
+|++++|++++.+|+++|| ||+.+...+.+.|++. .+.+...++|+++.. ...||+|+++.++
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~------~~~~drv~vl~~~ 297 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVL------DYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHH------HHHCSEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeCC
Confidence 9999999999988888777 6665555555555543 234677779998875 3679999999754
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.54 E-value=2.1e-16 Score=155.51 Aligned_cols=73 Identities=12% Similarity=-0.037 Sum_probs=59.1
Q ss_pred CcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 183 YDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
...+++|++||+.+|++++.+|+++|+ ||+.+...+.+.|.+.++ +...++|+++.. ...||+|+++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~-tVIiISHD~e~v------~~l~DrVivL 971 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG-GVIIITHSAEFT------KNLTEEVWAV 971 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSS-EEEEECSCHHHH------TTTCCEEECC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCC-EEEEEECCHHHH------HHhCCEEEEE
Confidence 346889999999999999988888888 777777777777766643 777789988875 4789999999
Q ss_pred CCCCHH
Q 043263 257 AEGKLD 262 (286)
Q Consensus 257 ~~G~i~ 262 (286)
++|++.
T Consensus 972 ~~G~Iv 977 (986)
T 2iw3_A 972 KDGRMT 977 (986)
T ss_dssp BTTBCC
T ss_pred ECCEEE
Confidence 999763
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.53 E-value=3.9e-17 Score=153.29 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=103.8
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeC
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~ 144 (286)
.++++|+++.|+. .|..+++.+.+ |++++|+||||||||||+++|+|++. |..|++. ...+.++.
T Consensus 287 ~l~~~~l~~~~~~~~l~~~~~~i~~-Ge~~~i~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~~~i~~v~ 353 (538)
T 1yqt_A 287 LVTYPRLVKDYGSFRLEVEPGEIKK-GEVIGIVGPNGIGKTTFVKMLAGVEE------------PTEGKIEWDLTVAYKP 353 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSBCCCCCCCCEEEEC
T ss_pred EEEEeeEEEEECCEEEEeCccccCC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECceEEEEe
Confidence 4778889888875 57777777787 99999999999999999999999986 3344311 11111111
Q ss_pred HHHHHHHhhccchhhhheec-ccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263 145 KEEFLQMVDKNELLEYALVY-GDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF----- 209 (286)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il----- 209 (286)
++.. ........+..... ...+ ...+.+.++ ..+....+++|++||+.+|++++.+|+++|+
T Consensus 354 Q~~~--~~~~~tv~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 354 QYIK--ADYEGTVYELLSKIDASKL-NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SSCC--CCCSSBHHHHHHHHHHHHH-TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCCc--CCCCCcHHHHHHhhhccCC-CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 1000 00000000000000 0000 001111111 1222345788999999999999988888777
Q ss_pred -EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 -LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 -ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+. .+.+...++|+++.. ...||+|+++++
T Consensus 431 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~------~~~~drv~vl~~ 477 (538)
T 1yqt_A 431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLMVFEG 477 (538)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence 6666666666665542 244777889988875 367999999874
No 73
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=129.22 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=112.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhh
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEY 160 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~ 160 (286)
+..|....+..+..|+|+||+|+| |++.|...++..... .+|| |+.|+.+|.+|+|
T Consensus 213 YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s--~~TR-pR~gE~dG~~Y~F------------------ 268 (468)
T 3shw_A 213 YERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI--AKSE-PRDAGTDQRSSGI------------------ 268 (468)
T ss_dssp EEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE--CCCB-C----------CB------------------
T ss_pred cceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee--ecCC-CCCcccccccCCc------------------
Confidence 344433334457889999999999 888887766533222 3588 9999999998876
Q ss_pred heecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043263 161 ALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATA 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~ 240 (286)
++.+.+++.+++|..++++.+.|.+..++... ..+++||+.||+.+.|.++.......+.+.+..+++.+
T Consensus 269 ---------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a 338 (468)
T 3shw_A 269 ---------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS 338 (468)
T ss_dssp ---------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred ---------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcC-CCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 47778999999999999999999998887654 45699999999999997643332333445566666665
Q ss_pred HH-HhhccCCCcEEEECCCCCH-HHHHHHHHHHHHHHHhc
Q 043263 241 RE-EVQHVKNFDYVVVNAEGKL-DSAVKLVESVIDAEKAK 278 (286)
Q Consensus 241 ~~-~~~~~~~~d~viv~~~G~i-~~~~~~l~~~i~~~~~~ 278 (286)
.. +..+...+|.||+|++ + ++++++|..+|..++..
T Consensus 339 ~~~e~~~~~~fD~vIvNdd--l~d~a~~~L~~ii~~~~~~ 376 (468)
T 3shw_A 339 HKLRKNNHHLFTTTINLNS--MNDGWYGALKEAIQQQQNQ 376 (468)
T ss_dssp HHHHHHHGGGCSEEEECBT--TBCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhccCCEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence 33 3445678999999887 8 58999999999988754
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=7.9e-17 Score=152.90 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=103.7
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeC
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVS 144 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~ 144 (286)
.++++|+++.|+. .|+.+++.+.+ |++++|+||||||||||+++|+|++. |..|++. ...+.++.
T Consensus 357 ~l~~~~l~~~~~~~~l~~~~~~v~~-Gei~~i~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~~~i~~v~ 423 (607)
T 3bk7_A 357 LVEYPRLVKDYGSFKLEVEPGEIRK-GEVIGIVGPNGIGKTTFVKMLAGVEE------------PTEGKVEWDLTVAYKP 423 (607)
T ss_dssp EEEECCEEEECSSCEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSBSCCCCCCCEEEEC
T ss_pred EEEEeceEEEecceEEEecccccCC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEEeeEEEEEe
Confidence 4778899998875 56777777787 99999999999999999999999986 4444421 11111111
Q ss_pred HHHHHHHhhccchhhhheec-ccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263 145 KEEFLQMVDKNELLEYALVY-GDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF----- 209 (286)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il----- 209 (286)
+.. .........++.... ...+ ...+.+.++ ..+....+++|++||+.+|++++.+|+++|+
T Consensus 424 Q~~--~~~~~~tv~e~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 424 QYI--KAEYEGTVYELLSKIDSSKL-NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SSC--CCCCSSBHHHHHHHHHHHHH-HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCc--cCCCCCcHHHHHHhhhccCC-CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 100 000000000000000 0000 001111111 1222346888999999999999988887777
Q ss_pred -EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 -LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 -ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+. .+.+...++|++... ...||+|+++++
T Consensus 501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~------~~~adrv~vl~~ 547 (607)
T 3bk7_A 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLIVFEG 547 (607)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEcC
Confidence 6666566666655542 244777789988875 367999999874
No 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.7e-16 Score=148.10 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=98.6
Q ss_pred HhHHHHhcc---cccCCCCCCCCCC-----eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCccee
Q 043263 71 RSLEASLGH---AFDSNPVCPPPNP-----LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKDYF 141 (286)
Q Consensus 71 ~~v~~~~~~---~l~~~~~~~~~~g-----~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~~~ 141 (286)
.++++.|+. .+.++++.+.+ | ++++|+||||||||||+++|+|++. |..|+ +.+..+.
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~-G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~------------p~~G~~~~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEE-GEFSDSEILVMMGENGTGKTTLIKLLAGALK------------PDEGQDIPKLNVS 416 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECC-EECCTTCEEEEESCTTSSHHHHHHHHHTSSC------------CSBCCCCCSCCEE
T ss_pred cceeEEecCcccccCceEEEEec-CccccceEEEEECCCCCcHHHHHHHHhcCCC------------CCCCcCccCCcEE
Confidence 456667754 56777777766 5 7899999999999999999999986 44443 1121221
Q ss_pred eeCHHHHHHHhhccchhhhh--eecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263 142 FVSKEEFLQMVDKNELLEYA--LVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF- 209 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il- 209 (286)
++.+.. . ........++. ...... ...+...++ .......+++|++||+++|++++.+|+++|+
T Consensus 417 ~~~q~~-~-~~~~~tv~e~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 417 MKPQKI-A-PKFPGTVRQLFFKKIRGQF--LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EECSSC-C-CCCCSBHHHHHHHHCSSTT--TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred Eecccc-c-ccCCccHHHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 111100 0 00000000000 000000 011111111 1223356889999999999999988887777
Q ss_pred -----EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263 210 -----LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAE 258 (286)
Q Consensus 210 -----ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~ 258 (286)
||+.+...+.+.|.+ ..+.+...++|+++.. ...||+|+++++
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~------~~~aDrvivl~~ 543 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA------TYLADKVIVFEG 543 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEECEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence 666555555554443 2345778889998875 367999999985
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.49 E-value=8.4e-17 Score=140.01 Aligned_cols=150 Identities=13% Similarity=0.007 Sum_probs=92.5
Q ss_pred hHHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263 66 KIELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS 144 (286)
Q Consensus 66 ~~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~ 144 (286)
..++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|++++ .+.+... .++. .
T Consensus 100 ~~i~~~~vs~~y~~~vL~~vsl~i~~-Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~--v~q~------~----- 162 (305)
T 2v9p_A 100 TFFNYQNIELITFINALKLWLKGIPK-KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF--ANHK------S----- 162 (305)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCTT-CSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG--GGTT------S-----
T ss_pred CeEEEEEEEEEcChhhhccceEEecC-CCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE--ecCc------c-----
Confidence 45899999999964 68899999998 9999999999999999999999986 2222100 0000 0
Q ss_pred HHHHHHHhhccchhhhheecc-cccCccHHHHHHHHhcC--CcEEEEeCHHHHHHHHHHhCCCcEEEE--EecCCHHHHH
Q 043263 145 KEEFLQMVDKNELLEYALVYG-DYKGIPKKQIREYMAKG--YDIVLRVDIQGARTLRRILGDSAVFVF--LAAESEMALV 219 (286)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~g--~~~v~~~~~q~v~iaral~~~~~~~Il--ld~~~~~~l~ 219 (286)
.+..+.+.+++..+. .......+.+...++.+ ...+++|++|| ||+++.+|+++|. ||+.++..+.
T Consensus 163 ------~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~ 233 (305)
T 2v9p_A 163 ------HFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYL 233 (305)
T ss_dssp ------GGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGG
T ss_pred ------ccccccHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHH
Confidence 000111121111111 00000011122212222 24688999999 9999999999987 7777655442
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 220 ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 220 ~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.++|+++. ...||+| ++++|++
T Consensus 234 ------------~ltH~~~~-------~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 234 ------------YLHSRVQT-------FRFEQPC-TDESGEQ 255 (305)
T ss_dssp ------------GGTTTEEE-------EECCCCC-CCC---C
T ss_pred ------------HHhCCHHH-------HHhCCEE-EEeCCEE
Confidence 13666554 5789999 9998876
No 77
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.2e-12 Score=107.20 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=86.3
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE 159 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~ 159 (286)
.++++++.+.+ |++|+|+|++||||||+++.|++.++ .. +++.+.+........+.+
T Consensus 14 ~~~~~~~~~~~-~~~i~l~G~~GsGKsTl~~~La~~l~--------------------~~--~i~~d~~~~~~~g~~i~~ 70 (199)
T 3vaa_A 14 GTENLYFQSNA-MVRIFLTGYMGAGKTTLGKAFARKLN--------------------VP--FIDLDWYIEERFHKTVGE 70 (199)
T ss_dssp ----------C-CCEEEEECCTTSCHHHHHHHHHHHHT--------------------CC--EEEHHHHHHHHHTSCHHH
T ss_pred CCCceeEecCC-CCEEEEEcCCCCCHHHHHHHHHHHcC--------------------CC--EEcchHHHHHHhCCcHHH
Confidence 46666666665 99999999999999999999998763 11 122222111111111100
Q ss_pred hheeccc-ccCccHHHHHHHHhcCCcEEEEe---CHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH-Hhc------CC
Q 043263 160 YALVYGD-YKGIPKKQIREYMAKGYDIVLRV---DIQGARTLRRILGDSAVFVFLAAESEMALVERLV-ERK------TE 228 (286)
Q Consensus 160 ~~~~~~~-~~~~~~~~i~~~~~~g~~~v~~~---~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~-~r~------~~ 228 (286)
.....+. .+......+...+..+...++.. -.......+.+ ..+..+|+|+++ .+.+.+|+. .+. +.
T Consensus 71 ~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l-~~~~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~ 148 (199)
T 3vaa_A 71 LFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFM-NRTGKTVFLNVH-PDVLFRRLRIAKQQRPILQGK 148 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHH-HHHSEEEEEECC-HHHHHHHHHHTGGGCGGGTTC
T ss_pred HHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHH-HcCCEEEEEECC-HHHHHHHHhcCCCCCCCcCCC
Confidence 0000000 00001111222233444555541 11111122222 235789999987 888889998 331 22
Q ss_pred CHHHHHHHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 229 NREELLVRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 229 t~~~i~~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
+...+..++.....+. .....+|.+|.+++.++++++++|.+.++...
T Consensus 149 ~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 149 EDDELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 4444444444444322 22234898886665589999999999887653
No 78
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.45 E-value=1.5e-12 Score=109.20 Aligned_cols=176 Identities=17% Similarity=0.169 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch-hh---hheeccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL-LE---YALVYGD 166 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~-~~---~~~~~~~ 166 (286)
+|.+|+|.|++||||||+++.|++.+.. ++.+. .++.|..+. ..+.++..+.++.. .. ...+..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~-~~~~p~~~~---------~g~~i~~~~~~~~~~~~~~~~ll~~a~ 93 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI-MTREPGGVP---------TGEEIRKIVLEGNDMDIRTEAMLFAAS 93 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE-EECTTTTCH---------HHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce-eecCCCCCc---------hHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5999999999999999999999998764 33332 223332111 12233343332221 00 0001111
Q ss_pred ccCccHHHHHHHHhcCCcEEEE----------e-----CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcC-
Q 043263 167 YKGIPKKQIREYMAKGYDIVLR----------V-----DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKT- 227 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~g~~~v~~----------~-----~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~- 227 (286)
.+....+.+...+..|..++++ + ....+..+..+ ...|+++|+||.+ .+.+.+|+.+|+.
T Consensus 94 r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~~~ 172 (229)
T 4eaq_A 94 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRD 172 (229)
T ss_dssp HHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCC
Confidence 0000111234556678778887 3 22222222222 2478999999997 7888899988742
Q ss_pred ---CC--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 228 ---EN--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 228 ---~t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.. ...+..++.....+.........++++.+++++++.++|.+.+.....+
T Consensus 173 ~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~~ 228 (229)
T 4eaq_A 173 QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 228 (229)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 11 3345566665544433222235677788889999999999999876543
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.44 E-value=1.3e-15 Score=149.85 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCcc---ee
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKD---YF 141 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~---~~ 141 (286)
+...|+++.|+. .|+++++.+.+ |++++|+||||||||||+++|++ .... .... .....+.+.... +.
T Consensus 436 L~~~~ls~~yg~~~iL~~vsl~I~~-Ge~v~LiGpNGsGKSTLLk~LagG~i~g--~~~~---~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKTQLRLKR-ARRYGICGPNGCGKSTLMRAIANGQVDG--FPTQ---EECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHHTCSTT--CCCT---TTSCEEETTCCCCCCCT
T ss_pred eEEeeEEEEECCEEeEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCcCC--Cccc---cceeEEEEccccccccc
Confidence 555688999986 78999999998 99999999999999999999985 2110 0000 000000011000 00
Q ss_pred eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263 142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-- 209 (286)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-- 209 (286)
..+. .++... ..++. .+.+.+. ..+....+++|++||+.+|++++.+|+++|+
T Consensus 510 ~ltv------------~e~l~~--~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 510 DTSV------------LDFVFE--SGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp TSBH------------HHHHHT--TCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCcH------------HHHHHH--hhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0011 111000 00011 2222222 2233346788999999999999988888888
Q ss_pred ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
||+.+...+.+.|.+ .+.+...++|++... ...||+|+++++|++
T Consensus 575 PTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l------~~~adrii~L~~G~i 623 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFL------DNVCEYIINYEGLKL 623 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred CccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHH------HHhCCEEEEEECCee
Confidence 777777778777777 445777889988875 357999999988865
No 80
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.44 E-value=2.9e-12 Score=105.07 Aligned_cols=174 Identities=21% Similarity=0.325 Sum_probs=97.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC--CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP--MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYG 165 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~--~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (286)
.+.++.+|+|+|++||||||+++.|+..++...++.....+. ...|. .+ .+.+...+.++.+.....
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~----~~----~~~i~~~~~~g~~~~~~~--- 79 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGS----QY----GELIKNCIKEGQIVPQEI--- 79 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTC----SC----HHHHHHHHHTTCCCCHHH---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCC----HH----HHHHHHHHHcCCcCCHHH---
Confidence 344578999999999999999999997764322222211110 00111 10 111222222221111100
Q ss_pred cccCccHHHHHHHHhcC-CcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHH
Q 043263 166 DYKGIPKKQIREYMAKG-YDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLV 235 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g-~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~ 235 (286)
.+....+.+...+..| ..+++++- ......+...+..++++|+|+++ .+.+.+|+.+|+. .+.+.+..
T Consensus 80 -~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~ 157 (203)
T 1ukz_A 80 -TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKK 157 (203)
T ss_dssp -HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred -HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHH
Confidence 0111233444555666 45666653 22223344455567889999997 7788899887642 24666766
Q ss_pred HHHHHHHH----hhccCCCcEEE-ECCCCCHHHHHHHHHHHHHH
Q 043263 236 RIATAREE----VQHVKNFDYVV-VNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 236 rl~~~~~~----~~~~~~~d~vi-v~~~G~i~~~~~~l~~~i~~ 274 (286)
|+...... .++...+|.++ ++++++++++.++|.+++..
T Consensus 158 r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 158 RFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 65543322 12234577654 56778999999999998865
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.41 E-value=7.6e-14 Score=122.26 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=39.6
Q ss_pred hhHHHhHhHHHHhcccccCCC----------------------CC-CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 65 NKIELLRSLEASLGHAFDSNP----------------------VC-PPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~~l~~~~----------------------~~-~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..|.+++|++.|+..+..++ .. +. +|+++||+||||||||||+++|++++.
T Consensus 41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRP-VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSC-CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCC-CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 445888889988864222221 22 44 499999999999999999999999875
No 82
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.41 E-value=1.2e-11 Score=98.36 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=68.5
Q ss_pred HHHHHH--hcCCcEEEEeC--HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHH--HHHH
Q 043263 174 QIREYM--AKGYDIVLRVD--IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIAT--AREE 243 (286)
Q Consensus 174 ~i~~~~--~~g~~~v~~~~--~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~--~~~~ 243 (286)
.+.+.+ ..+..+++++- ......++..+..+..+|+|+++ .+.+.+|+..|++ .+.+.+.+++.. ....
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~ 146 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSP-PKIRYKRMIERLRSDDSKEISELIRRDREELKLGI 146 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECC-HHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECC-HHHHHHHHHhccCCCCcchHHHHHHHHHhhhccCh
Confidence 344455 55667888764 22334455666677789999987 7888899998865 467777777643 2222
Q ss_pred hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 244 VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
......+|.+|.++ |+++++.++|.+++...
T Consensus 147 ~~~~~~ad~vId~~-~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 147 GEVIAMADYIITND-SNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHTCSEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred HhHHHhCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 33346789888654 69999999999998764
No 83
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.40 E-value=2.3e-12 Score=104.79 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
++.+|+|+|++||||||+++.|+..++...++.....+. +..|. . ....+...+..+...... ..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~----~----~~~~i~~~~~~g~~~~~~----~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGS----A----RGKKLSEIMEKGQLVPLE----TVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTC----H----HHHHHHHHHHTTCCCCHH----HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCC----h----HHHHHHHHHHcCCcCCHH----HHHH
Confidence 478999999999999999999998664222221111110 00000 0 011112222112111110 0111
Q ss_pred ccHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATA 240 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~ 240 (286)
...+.+...+..|..+++++.. ..+......+..+..+|+|+++ .+.+.+|+.+|+. .+...+..|+..+
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQRLLKRGETSGRVDDNEETIKKRLETY 154 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHccCCcCCCCCCCHHHHHHHHHHH
Confidence 1223344445567788888632 2222233344678899999987 7888899987752 2556677777766
Q ss_pred HHHhhc----cCCCcEE-EECCCCCHHHHHHHHHHHHHHH
Q 043263 241 REEVQH----VKNFDYV-VVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 241 ~~~~~~----~~~~d~v-iv~~~G~i~~~~~~l~~~i~~~ 275 (286)
...... ...+|.+ +++++++++++.++|.++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 544321 2235653 4566689999999999988753
No 84
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.38 E-value=8.2e-12 Score=104.85 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=104.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc----cch---hhhhee
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK----NEL---LEYALV 163 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~----~~~---~~~~~~ 163 (286)
+|.+|+|.|++||||||+++.|...+...+..+..++|.|. |. ++ .+.++..+.. ..+ .+...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t----~~----g~~ir~~l~~~~~~~~~~~~~e~lLf 96 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GT----LL----AEKLRALVKEEHPGEELQDITELLLV 96 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SS----HH----HHHHHHHHHSCCTTSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CC----HH----HHHHHHHHhhCCCcccCCHHHHHHHH
Confidence 38899999999999999999999877644444334455553 22 11 2334444321 111 122223
Q ss_pred cccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh
Q 043263 164 YGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVER 225 (286)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r 225 (286)
+.+.+....+.+..++..|..+++|- +...+..+... ...|+++|+||.+ .+...+|+.+|
T Consensus 97 ~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~R 175 (236)
T 3lv8_A 97 YAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARGR 175 (236)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 33322233345666778888888762 11222222221 2479999999998 77888999877
Q ss_pred cCC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 226 KTE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 226 ~~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
+.. . ......++.....+.... ..+.++++.+++++++.++|.++++....+..
T Consensus 176 ~~~dr~E~~~~~~~~rv~~~y~~la~~-~~~~~vIDa~~sieeV~~~I~~~l~~~l~~~~ 234 (236)
T 3lv8_A 176 GELDRIEKMDISFFERARERYLELANS-DDSVVMIDAAQSIEQVTADIRRALQDWLSQVN 234 (236)
T ss_dssp -CCCTTTTSCHHHHHHHHHHHHHHHHH-CTTEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHH-CCCEEEEeCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 531 1 134555555544333211 12367778889999999999999998776543
No 85
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.38 E-value=1.7e-14 Score=139.03 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=49.1
Q ss_pred cEEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 184 DIVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
..+++|++||+++||+++.+|+ ++|+ ||+.+...+.+.|.+. .+.|...++|+++.. ..||+|
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-------~~~d~i 273 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM-------LAADYL 273 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH-------HHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-------hhCCEE
Confidence 4577899999999999998876 6666 6666666666655432 244778889988753 459999
Q ss_pred EEC
Q 043263 254 VVN 256 (286)
Q Consensus 254 iv~ 256 (286)
+++
T Consensus 274 i~l 276 (670)
T 3ux8_A 274 IDI 276 (670)
T ss_dssp EEE
T ss_pred EEe
Confidence 998
No 86
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.36 E-value=4.8e-12 Score=106.99 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
++.+|+|+||+||||||+++.|+..++..++++.++.|. ...|.. ....+...+..+.++.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~--------~g~~i~~~~~~g~~~~~~~------- 92 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE--------LGLKIKNIINEGKLVDDQM------- 92 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH--------HHHHHHHHHHTTCCCCHHH-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch--------HHHHHHHHHhcCCCCcHHH-------
Confidence 378999999999999999999998776545544444332 111111 0112233333333322211
Q ss_pred ccHHHHHHHHh---cCCcEEEEeCHHHHHHHHHH-------hCCCcEEEEEecCCHHHHHHHHHHhc-------------
Q 043263 170 IPKKQIREYMA---KGYDIVLRVDIQGARTLRRI-------LGDSAVFVFLAAESEMALVERLVERK------------- 226 (286)
Q Consensus 170 ~~~~~i~~~~~---~g~~~v~~~~~q~v~iaral-------~~~~~~~Illd~~~~~~l~~rl~~r~------------- 226 (286)
....+...+. .+...++++..+.+..+..+ -..++.+|+|+++ .+.+.+|+..|+
T Consensus 93 -~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~ 170 (243)
T 3tlx_A 93 -VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIF 170 (243)
T ss_dssp -HHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTT
T ss_pred -HHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCccccccc
Confidence 1112233332 25567887744333222221 1357788999997 788889999764
Q ss_pred --------------------CCCHHHHHHHHHHHHHHhhcc----CCC-cEEEECCCCCHHHHHHHHHHHHH
Q 043263 227 --------------------TENREELLVRIATAREEVQHV----KNF-DYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 227 --------------------~~t~~~i~~rl~~~~~~~~~~----~~~-d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
..+.+.+.+|+..+..+...+ ... -.+.++.+++++++.++|.+++.
T Consensus 171 ~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 171 NPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 236788999999877654321 222 24556777899999999998875
No 87
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.35 E-value=5.5e-12 Score=102.61 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh---hheecccccCc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE---YALVYGDYKGI 170 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~ 170 (286)
+|+|+|++||||||+++.|...+...+..+. .++.|. +..+ ...++..+..+.+.. ...+..+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~-~~~~~~-----~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 71 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI-LKREPG-----GTET----GEKIRKILLEEEVTPKAELFLFLASRNLL 71 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE-EEESSC-----SSHH----HHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE-EeeCCC-----CCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999987631122221 112221 1111 122222222111111 00011111111
Q ss_pred cHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 171 PKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
..+ +...+..|..++++- ....+..+... ...|+.+|+|+++ .+.+.+|+.+|+..+...
T Consensus 72 ~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~ 149 (197)
T 2z0h_A 72 VTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKRE 149 (197)
T ss_dssp HHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CCCCCHH
T ss_pred HHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCC-HHHHHHHHhccCcccHHH
Confidence 111 333345566666651 22222222211 2368899999997 788889998885544445
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
+..++..+..+.......+.++++++++++++.+++.+.+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6566655544433233456677788899999999999887653
No 88
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.33 E-value=2.7e-12 Score=105.56 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH----HHHHHHHHHHHHHHh
Q 043263 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD----SAVKLVESVIDAEKA 277 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~----~~~~~l~~~i~~~~~ 277 (286)
.+.+|+|+++ .+.+.+|+.+|.+.+.+.+..++..+.+..+....||.+|. ++|+++ ++.+++.+++.....
T Consensus 124 ~d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~~~ad~vId-n~~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 124 CDRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVIN-NDAELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp CSEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHHHCSEEEE-CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEE-CCCCccccHHHHHHHHHHHHHHHHH
Confidence 4788999987 78888999888666888888888765443343457897664 456999 999999998876554
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.33 E-value=1.2e-12 Score=110.89 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=45.7
Q ss_pred CcEEEEEecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHH--HH----hhccCCCcEEE---ECCCCCHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVER--KTENREELLVRIATAR--EE----VQHVKNFDYVV---VNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~--~~----~~~~~~~d~vi---v~~~G~i~~~~~~l~~~i 272 (286)
....|+++++....+.+++... .+.+.+.+..++..+. .. .+....||.|| +++++.++++.+++.+++
T Consensus 154 ~~~~i~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~ 233 (245)
T 2jeo_A 154 FHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDIL 233 (245)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHH
Confidence 3677888887445554444432 1447777776665422 11 13357899888 244568999999999988
Q ss_pred HHHHhccccc
Q 043263 273 DAEKAKVRQR 282 (286)
Q Consensus 273 ~~~~~~~~~~ 282 (286)
+.....++|+
T Consensus 234 ~~~~~~~~~~ 243 (245)
T 2jeo_A 234 NGDICKWHRG 243 (245)
T ss_dssp HTCC------
T ss_pred hcchhhhhcC
Confidence 7655555554
No 90
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.33 E-value=4e-12 Score=105.37 Aligned_cols=172 Identities=18% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
++++|.|+||+||||+|+++.|+..+...+++..+.-|..- -.+.+ ....+...+..+.++....+. .+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i---~~~t~----lg~~~~~~~~~G~lVpde~~~----~l 96 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEV---QSGSP----KGKELKAMMERGELVPLEVVL----AL 96 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHH---TTCCH----HHHHHHHHHHHTCCCCHHHHH----HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHH---HcCCc----hHHHHHHHHhcCCCCCHHHHH----HH
Confidence 47899999999999999999999887533333221111000 00000 001112222222222211110 11
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHH---HHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLR---RILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATAR 241 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iar---al~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~~ 241 (286)
..+.+.+........+++|-+.-+..|. .....+..+|+|+.+ .+.+.+|+..|.. .+.+.+.+|+..+.
T Consensus 97 v~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~-~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~ 175 (217)
T 3umf_A 97 LKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVS-EEVMRKRLLKRAETSNRVDDNEETIVKRFRTFN 175 (217)
T ss_dssp HHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHSCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCC-HHHHHHHHhcccccCCCCCCCHHHHHHHHHHHH
Confidence 1122222223344678888542233332 233478889999997 8888899976632 14577889988766
Q ss_pred HHhhc----c-CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 242 EEVQH----V-KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 242 ~~~~~----~-~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+..+ . .....+.++.++++++++++|.+.+++
T Consensus 176 ~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 176 ELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 54322 2 233455677788999999999998875
No 91
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.32 E-value=5.9e-12 Score=104.20 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|+|+|++||||||+++.|+..++...++.....|....+ +.+ ....+...+..+.+..+ .....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~--------~~~~~ 66 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN---GTE----LGLKAKSFMDQGNLVPD--------EVTIG 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT---TCH----HHHHHHHHHHHTCCCCH--------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCH--------HHHHH
Confidence 5899999999999999999876642222222111110000 000 00111111111111111 01112
Q ss_pred HHHHHHh---cCCcEEEEeCH---HHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHh------------------
Q 043263 174 QIREYMA---KGYDIVLRVDI---QGARTLRRIL----GDSAVFVFLAAESEMALVERLVER------------------ 225 (286)
Q Consensus 174 ~i~~~~~---~g~~~v~~~~~---q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r------------------ 225 (286)
.+.+.+. .+..+++++.. .....+...+ ..++.+|+|+++ .+.+.+|+.+|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 67 IVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 2333332 25677887532 2222222222 136789999997 78888999987
Q ss_pred ---------------cCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 226 ---------------KTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 226 ---------------~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
...+.+.+..|+..+....... .....+.++.+++++++.++|.+++..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 3347788888888766543221 122346667788999999999998864
No 92
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.32 E-value=3.3e-11 Score=99.73 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=103.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc---h---hhhheec
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE---L---LEYALVY 164 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~---~---~~~~~~~ 164 (286)
+|.+|+|.|++||||||+++.|...+...+..+ ..+|.|. |. ++ .+.++..+.++. + .+...+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~-~~----~~----g~~i~~~l~~~~~~~~~~~~~~llf~ 74 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPG-GT----PL----AERIRELLLAPSDEPMAADTELLLMF 74 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSC-SS----HH----HHHHHHHHHSCCSSCCCHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCC-CC----HH----HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 389999999999999999999998775433333 2344452 11 11 123343333221 1 1111222
Q ss_pred ccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263 165 GDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERK 226 (286)
Q Consensus 165 ~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~ 226 (286)
.+.+....+.+..++..|..+++|- +...+..+..+ ...|+++|+||.+ .+...+|+.+|+
T Consensus 75 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~R~ 153 (213)
T 4edh_A 75 AARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAARG 153 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 2222222334566677888777752 12222222222 2579999999997 788889998875
Q ss_pred CC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 227 TE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 227 ~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
+. . ......++...............++++.+++++++.++|.+.+.....+
T Consensus 154 ~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 154 RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp SCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 31 1 1234444444433322112234677788889999999999999876543
No 93
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.32 E-value=4.8e-11 Score=98.35 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhh---hheecc
Q 043263 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLE---YALVYG 165 (286)
Q Consensus 90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~---~~~~~~ 165 (286)
.+|.+|+|+|++||||||+++.|+..+...++.+. ..+.|..+. .+ ...++..+..+ .+-. ...+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~~~~~----~~----~~~i~~~~~~~~~~~~~~~~~~~~~ 77 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFPERST----EI----GKLLSSYLQKKSDVEDHSVHLLFSA 77 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCTTS----HH----HHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCCCCCC----cH----HHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35889999999999999999999987642222221 112221111 00 01111211111 0100 000000
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCH------H------HHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc-CCC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDI------Q------GARTLRRI---LGDSAVFVFLAAESEMALVERLVERK-TEN 229 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~------q------~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~-~~t 229 (286)
..+.. .+.+...+..+..++++... + ....+..+ ...++.+|+|+++ .+.+.+|+..+. ...
T Consensus 78 ~r~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~ 155 (215)
T 1nn5_A 78 NRWEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYE 155 (215)
T ss_dssp HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTC
T ss_pred HHHHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccc
Confidence 00111 12455556677777777311 0 01122222 1257889999987 778888886431 222
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
...+..++..+..+......++.++++++++++++.++|.+++.......+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~~ 206 (215)
T 1nn5_A 156 NGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT 206 (215)
T ss_dssp SHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhcc
Confidence 234445555544443322335666677778999999999999988765443
No 94
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.31 E-value=1.3e-11 Score=101.10 Aligned_cols=157 Identities=22% Similarity=0.209 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP 171 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (286)
+.+|+|+|++||||||+++.|++.++...+ ++.++. ........ ..+......... ..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i--------------~~d~~~--~~~~~~~~-~~g~~~~~~~~~-----~~ 75 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI--------------EGDALH--PPENIRKM-SEGIPLTDDDRW-----PW 75 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE--------------EGGGGC--CHHHHHHH-HHTCCCCHHHHH-----HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE--------------eCCcCc--chhhHHHH-hcCCCCCchhhH-----HH
Confidence 578999999999999999999987642111 111111 11111111 001000000000 01
Q ss_pred HHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhc
Q 043263 172 KKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQH 246 (286)
Q Consensus 172 ~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~ 246 (286)
...+...+..+..+++++. ......++.....+..+|+|+++ .+.+.+|+.+|.+. ....+...+.. .+.
T Consensus 76 ~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~----~~~ 150 (202)
T 3t61_A 76 LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLET----LED 150 (202)
T ss_dssp HHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHH----CCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHh----cCC
Confidence 1233444566777777643 33344455555555788999987 88889999988642 43333332222 221
Q ss_pred c--CCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 247 V--KNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 247 ~--~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
. ..++.+| +.+++++++.++|.++++...
T Consensus 151 ~~~~~~~~~I-d~~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 151 PRGEVRTVAV-DVAQPLAEIVREALAGLARLA 181 (202)
T ss_dssp CTTSTTEEEE-ESSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEE-eCCCCHHHHHHHHHHHHHHhh
Confidence 1 2345554 555899999999999998653
No 95
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=100.98 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=91.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeeccc-CCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSR-PMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r-~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+.+|+|+|++||||||+++.|+..++...++.....+ .+.. |.+. ...+...+..+....... ....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~----~~~~----~~~i~~~~~~g~~~~~~~----~~~~ 79 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS----ESER----SKLIRDIMERGDLVPSGI----VLEL 79 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH----TCHH----HHHHHHHHHTTCCCCHHH----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHh----CCHH----HHHHHHHHHcCCcCCHHH----HHHH
Confidence 6789999999999999999999876422211110000 0000 0000 011111111111111000 0011
Q ss_pred cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAR 241 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~ 241 (286)
..+.+...+..+..+++++-. .....+...+..++.+|+|+++ .+.+.+|+.+|+.. +.+.+..|+..+.
T Consensus 80 ~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~ 158 (199)
T 2bwj_A 80 LKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYY 158 (199)
T ss_dssp HHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 122233333457778888532 1122223333467889999987 78888999887542 2345666665544
Q ss_pred HHhh----ccCCCcE-EEECCCCCHHHHHHHHHHHHHHH
Q 043263 242 EEVQ----HVKNFDY-VVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 242 ~~~~----~~~~~d~-viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
.... ....++. ++++++++++++.++|.+.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 159 RASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 4332 1222344 56677789999999999988653
No 96
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.31 E-value=6.8e-12 Score=102.78 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|++++|+|+|||||||++++|++.++... ++|.++. ......... .+........... +..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--------------i~~d~~~--~~~~~~~~~-~g~~~~~~~~~~~-~~~ 89 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--------------AEADAFH--SPENIATMQ-RGIPLTDEDRWPW-LRS 89 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--------------EEGGGGS--CHHHHHHHH-TTCCCCHHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--------------Ecccccc--cHHHHHHHh-cCCCCCCcccccH-HHH
Confidence 489999999999999999999998763111 2233321 111111110 0000000000000 001
Q ss_pred cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhh
Q 043263 171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQ 245 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~ 245 (286)
....+...+..+..++++... .....++.+. .+..+|+|+++ .+.+.+|+.+|.+. +...+. .+....+
T Consensus 90 ~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~----~~~~~~~ 163 (200)
T 4eun_A 90 LAEWMDARADAGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQ----SQLATLE 163 (200)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHH----HHHHHCC
T ss_pred HHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHH----HHHHHhC
Confidence 112233345566677776532 1122222222 24577889987 88899999887543 223332 2222222
Q ss_pred cc--CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 246 HV--KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 246 ~~--~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.. ..+|.+| +++++++++.++|.+++..
T Consensus 164 ~~~~~~~~~~I-d~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 164 ALEPDESGIVL-DLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp CCCTTSCEEEE-ETTSCHHHHHHHHHHHHCC
T ss_pred CCCCCCCeEEE-ECCCCHHHHHHHHHHHHHh
Confidence 22 2355555 5567999999999888754
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.31 E-value=1.6e-11 Score=101.23 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH------hhccCCCcEEEECCCCC----HHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVER---KTENREELLVRIATAREE------VQHVKNFDYVVVNAEGK----LDSAVKLVE 269 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~------~~~~~~~d~viv~~~G~----i~~~~~~l~ 269 (286)
..+..++||++.+..+.+++.+. .+.+...+.|++..+... .++...||.||.++ |+ ++.+.+++.
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~-~~~~~~~~~~~~~i~ 202 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRG-GQNPVALEMLAAKAL 202 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEST-TSCHHHHHHHHHHHT
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCC-CcchHHHHHHHHHHH
Confidence 34889999998776676666532 245888888987655432 23346789988765 67 555555554
Q ss_pred HHH
Q 043263 270 SVI 272 (286)
Q Consensus 270 ~~i 272 (286)
+++
T Consensus 203 ~~~ 205 (211)
T 3asz_A 203 ARL 205 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 98
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.30 E-value=4.2e-12 Score=107.63 Aligned_cols=187 Identities=13% Similarity=0.077 Sum_probs=88.9
Q ss_pred HHHhHhH-HHHh-cc--cccCCCCCCCC--CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263 67 IELLRSL-EASL-GH--AFDSNPVCPPP--NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY 140 (286)
Q Consensus 67 ~i~~~~v-~~~~-~~--~l~~~~~~~~~--~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~ 140 (286)
.++++|+ ++.| +. .|+++++.+.+ +|++|+|+|++||||||++++|++.+..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~---------------------- 74 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY---------------------- 74 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC----------------------
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC----------------------
Confidence 4778888 8888 43 67777777764 3889999999999999999999987641
Q ss_pred eeeCHHHHHHHhh-ccchhhhheecccc--cCccHHHHHHHHhc-CCcEEEEe-CHHHHHHHHHHhCCCcEEEEEecCCH
Q 043263 141 FFVSKEEFLQMVD-KNELLEYALVYGDY--KGIPKKQIREYMAK-GYDIVLRV-DIQGARTLRRILGDSAVFVFLAAESE 215 (286)
Q Consensus 141 ~~~~~~~~~~~i~-~~~~~~~~~~~~~~--~~~~~~~i~~~~~~-g~~~v~~~-~~q~v~iaral~~~~~~~Illd~~~~ 215 (286)
.+++.+.+..... ...+.+....++.. .....+.+.+.... ...++..| ..-.-...+..+. ...+|||+++ .
T Consensus 75 ~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~-~~~vV~L~a~-~ 152 (250)
T 3nwj_A 75 TFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMH-KGISIWLDVP-L 152 (250)
T ss_dssp EEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHT-TSEEEEEECC-H
T ss_pred cEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHh-CCcEEEEECC-H
Confidence 1122221111111 10110000011110 00111223333333 23333322 1111112233442 4789999997 7
Q ss_pred HHHHHHHHHhc---C--CCH-------HHHHHHHHHHHHHh-hccCCCcEEE------------ECCCCCHHHHHHHHHH
Q 043263 216 MALVERLVERK---T--ENR-------EELLVRIATAREEV-QHVKNFDYVV------------VNAEGKLDSAVKLVES 270 (286)
Q Consensus 216 ~~l~~rl~~r~---~--~t~-------~~i~~rl~~~~~~~-~~~~~~d~vi------------v~~~G~i~~~~~~l~~ 270 (286)
+.+.+|+.+++ + ... .....++.....+. .....+|.++ -.++.++++++++|.+
T Consensus 153 e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~ 232 (250)
T 3nwj_A 153 EALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFE 232 (250)
T ss_dssp HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHH
Confidence 88889987421 1 010 01122333333221 2234588888 2234489999999999
Q ss_pred HHHHHHh
Q 043263 271 VIDAEKA 277 (286)
Q Consensus 271 ~i~~~~~ 277 (286)
.+.....
T Consensus 233 ~i~~~~~ 239 (250)
T 3nwj_A 233 QVQSYLE 239 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9987653
No 99
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.30 E-value=1.2e-10 Score=92.54 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=50.3
Q ss_pred HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-hhccCCCcEEEECCCC-CHHHHHHHHH
Q 043263 194 ARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREE-VQHVKNFDYVVVNAEG-KLDSAVKLVE 269 (286)
Q Consensus 194 v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~-~~~~~~~d~viv~~~G-~i~~~~~~l~ 269 (286)
...++..+..|..+|+|+++ .+.+.+|+.+|++. .. ....++.....+ .+... ...++++.++ +++++.++|.
T Consensus 85 ~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~ev~~~I~ 161 (173)
T 3kb2_A 85 LRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEG-KDIDSILELYREVMSNAG-LHTYSWDTGQWSSDEIAKDII 161 (173)
T ss_dssp HHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCH-HHHHHHHHHHHHHHHTCS-SCEEEEETTTSCHHHHHHHHH
T ss_pred HHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHhhcC-CCEEEEECCCCCHHHHHHHHH
Confidence 34444555578899999986 88888999886432 33 233333333333 22223 3444556654 8999999999
Q ss_pred HHHHHHH
Q 043263 270 SVIDAEK 276 (286)
Q Consensus 270 ~~i~~~~ 276 (286)
+.++...
T Consensus 162 ~~~~~~~ 168 (173)
T 3kb2_A 162 FLVELEH 168 (173)
T ss_dssp HHHHHGG
T ss_pred HHHhCCC
Confidence 8887743
No 100
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.30 E-value=4.8e-12 Score=104.78 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
.|+|+|++||||||+++.|+..++...++.....|....+ +.+ ....+...+..+.+..+ .....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~--------~~~~~ 66 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKE---ETP----LGLEAKSYIDKGELVPD--------EVTIG 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHT---TCH----HHHHHHHHHTTTCCCCH--------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCH--------HHHHH
Confidence 5899999999999999999877643233222211110000 000 00111111111111110 01112
Q ss_pred HHHHHHh---cCCcEEEEeCH---HHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHh------------------
Q 043263 174 QIREYMA---KGYDIVLRVDI---QGARTLRRIL----GDSAVFVFLAAESEMALVERLVER------------------ 225 (286)
Q Consensus 174 ~i~~~~~---~g~~~v~~~~~---q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r------------------ 225 (286)
.+...+. .+..+++++.. +....+...+ ..++.+|+|+++ .+.+.+|+.+|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3dl0_A 67 IVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGRRICSVCGTTYHLVFNPPK 145 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCCCcCCccCCccccccCCCc
Confidence 2333332 36677887532 2222222222 236789999997 67888999988
Q ss_pred ---------------cCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 226 ---------------KTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 226 ---------------~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
...+.+.+..|+..+....... .....+.++.+++++++.++|.+++..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 3457788889888665443221 111245667788999999999988864
No 101
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.30 E-value=2.9e-11 Score=97.84 Aligned_cols=166 Identities=18% Similarity=0.307 Sum_probs=90.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+.+|+|+|++||||||+++.|+..++...++.....+. +..|.. ....+...+..+.+... ..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~--------~~~~i~~~~~~g~~~~~--------~~ 69 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK--------DGEMIATMIKNGEIVPS--------IV 69 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT--------THHHHHHHHHTTCCCCH--------HH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH--------HHHHHHHHHHCCCCCCH--------HH
Confidence 57899999999999999999998654222222111110 101100 01112222211111100 01
Q ss_pred cHHHHHHHHh--cCCcEEEEeCH---HHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHH
Q 043263 171 PKKQIREYMA--KGYDIVLRVDI---QGARTLRRILG---DSAVFVFLAAESEMALVERLVERKTE------NREELLVR 236 (286)
Q Consensus 171 ~~~~i~~~~~--~g~~~v~~~~~---q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~r 236 (286)
....+.+.+. .+..+++++.. .....+...+. .++.+|+|+++ .+.+.+|+.+|+.. +.+.+..|
T Consensus 70 ~~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r 148 (194)
T 1qf9_A 70 TVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIKKR 148 (194)
T ss_dssp HHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence 1112222222 45667777532 12222322333 46788889987 78888999877532 35677777
Q ss_pred HHHHHHHh----hccCCCcE-EEECCCCCHHHHHHHHHHHHHH
Q 043263 237 IATAREEV----QHVKNFDY-VVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 237 l~~~~~~~----~~~~~~d~-viv~~~G~i~~~~~~l~~~i~~ 274 (286)
+..+.... +....+|. ++++++++++++.++|.+++..
T Consensus 149 i~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 77654221 22234674 4556668999999999998865
No 102
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.29 E-value=3e-12 Score=112.02 Aligned_cols=52 Identities=21% Similarity=0.122 Sum_probs=41.0
Q ss_pred hHHHhHhHHHHhcccccCCCCCC------------------CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 66 KIELLRSLEASLGHAFDSNPVCP------------------PPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 66 ~~i~~~~v~~~~~~~l~~~~~~~------------------~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+++++|++.|+..+.++++.+ ..+|+++||+|||||||||++++|++++.
T Consensus 36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788899999865555555443 23499999999999999999999999864
No 103
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.28 E-value=2.9e-11 Score=96.59 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhee
Q 043263 84 NPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALV 163 (286)
Q Consensus 84 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (286)
+++.+++ |++++|+|||||||||+++++.+- ..+ .+.+.++..+.+..... .+
T Consensus 2 vsl~i~~-gei~~l~G~nGsGKSTl~~~~~~~----------------------~~~--~~~d~~~g~~~~~~~~~--~~ 54 (171)
T 4gp7_A 2 MKLTIPE-LSLVVLIGSSGSGKSTFAKKHFKP----------------------TEV--ISSDFCRGLMSDDENDQ--TV 54 (171)
T ss_dssp EEEEEES-SEEEEEECCTTSCHHHHHHHHSCG----------------------GGE--EEHHHHHHHHCSSTTCG--GG
T ss_pred ccccCCC-CEEEEEECCCCCCHHHHHHHHccC----------------------CeE--EccHHHHHHhcCcccch--hh
Confidence 3445555 999999999999999999974321 111 12222222221111000 00
Q ss_pred cccccCccHHHHHHHHhcCCcEEEE-------eCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHH
Q 043263 164 YGDYKGIPKKQIREYMAKGYDIVLR-------VDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELL 234 (286)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~g~~~v~~-------~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~ 234 (286)
.+..+..........+..|...+.+ ++.|++++|+++. ..+.++++|+| ...+-.+...|.. .+...+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~ 132 (171)
T 4gp7_A 55 TGAAFDVLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-CFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIR 132 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT-CEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC-CcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHH
Confidence 0000000111223334455555553 4679999999998 66678888988 5666666555432 2444443
Q ss_pred HHHHHHHHHhhcc--CCCcEEEECCCCCHHHH
Q 043263 235 VRIATAREEVQHV--KNFDYVVVNAEGKLDSA 264 (286)
Q Consensus 235 ~rl~~~~~~~~~~--~~~d~viv~~~G~i~~~ 264 (286)
............. +....|++.++ ++++
T Consensus 133 ~~~~~l~~~l~~l~~~g~tvi~vtH~--~~~~ 162 (171)
T 4gp7_A 133 KHTQQMKKSIKGLQREGFRYVYILNS--PEEV 162 (171)
T ss_dssp HHHHHHHHHSTTHHHHTCSEEEEECS--HHHH
T ss_pred HHHHHhhhhhhhHHhcCCcEEEEeCC--HHHh
Confidence 3322222221111 23556666665 5444
No 104
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.27 E-value=1.3e-10 Score=95.48 Aligned_cols=168 Identities=10% Similarity=0.144 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc----hhh---hheec
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE----LLE---YALVY 164 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~----~~~---~~~~~ 164 (286)
|.+|+|+|++||||||+++.|+..+...+ .+.. ++.| . |. .++..+..+. +-+ ...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~-~~~~-~----~~--------~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL-TEWN-S----SD--------WIHDIIKEAKKKDLLTPLTFSLIHA 68 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE-EETT-C----CC--------HHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE-ecCC-c----HH--------HHHHHHhccccccCCCHHHHHHHHH
Confidence 78999999999999999999998765221 1111 1111 1 11 1111111110 000 00000
Q ss_pred ccccCccHHHHHHHHhcCCcEEEEeCHHH--------------HHHHHHHhCCCcEEEEEecCCHHHHHHHHH-HhcCC-
Q 043263 165 GDYKGIPKKQIREYMAKGYDIVLRVDIQG--------------ARTLRRILGDSAVFVFLAAESEMALVERLV-ERKTE- 228 (286)
Q Consensus 165 ~~~~~~~~~~i~~~~~~g~~~v~~~~~q~--------------v~iaral~~~~~~~Illd~~~~~~l~~rl~-~r~~~- 228 (286)
...+....+.+...+..|..+++++.... +..+...+..++++|+|+++ .+.+.+|+. +|+..
T Consensus 69 ~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~~~ 147 (213)
T 2plr_A 69 TDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRKIK 147 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhccccccc
Confidence 00000011223445567777888864321 11111223357889999987 778889998 66521
Q ss_pred C-------------H---HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 229 N-------------R---EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 229 t-------------~---~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
. . ..+..++..+..+... .. ..++++.+++++++.++|.+.+.....
T Consensus 148 ~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~-~~-~~~~Id~~~~~e~v~~~I~~~l~~~~~ 210 (213)
T 2plr_A 148 PQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVK-DE-NFIVIDGTKTPKEIQIQIRKFVGELID 210 (213)
T ss_dssp TTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTT-TT-TCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHh-hC-CEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 1 1 2344455444333221 12 445567778999999999999876543
No 105
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.26 E-value=2.1e-10 Score=92.61 Aligned_cols=166 Identities=16% Similarity=0.185 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc-cCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhee
Q 043263 85 PVCPPPNPLIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALV 163 (286)
Q Consensus 85 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~-~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (286)
++..+. +.+|+|+|++||||||+++.|+.. ++...++.....+........+.. +.. .++..
T Consensus 4 ~~~~~~-~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~--------~~~-----~~~~r--- 66 (184)
T 1y63_A 4 SMEQPK-GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTE--------LDT-----HIIEE--- 66 (184)
T ss_dssp --CCCS-SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC--------------C-----CCCCH---
T ss_pred CcCCCC-CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHH--------hhh-----cccCC---
Confidence 344444 889999999999999999999987 432222211111111000000000 000 00000
Q ss_pred cccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043263 164 YGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR 241 (286)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~ 241 (286)
... ....+.+...+..+...+++.+.. .++. ....+|+|+++ .+.+.+|+.+|+. +...+..++..+.
T Consensus 67 ~~~--~~~~~~l~~~~~~~g~~vi~~~~~------~~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~-~~~~~~~~~~~q~ 136 (184)
T 1y63_A 67 KDE--DRLLDFMEPIMVSRGNHVVDYHSS------ELFPERWFHMVVVLHTS-TEVLFERLTKRQY-SEAKRAENMEAEI 136 (184)
T ss_dssp HHH--HHHHHHHHHHHTSSSEEEEECSCC------TTSCGGGCSEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHhccCCEEEeCchH------hhhhhccCCEEEEEECC-HHHHHHHHHhCCC-ChhhhHhhHHHHH
Confidence 000 000112233342333455554310 1121 14688999987 8889999998853 4544444443331
Q ss_pred -----HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 242 -----EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 242 -----~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
.+......+|.+|..++++++++..++.+++...+.
T Consensus 137 ~~~l~~~~~~~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~ 177 (184)
T 1y63_A 137 QCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEV 177 (184)
T ss_dssp TTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 121111225767764668999997777777666543
No 106
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.26 E-value=6.9e-11 Score=97.27 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch----hhhheecccc-
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL----LEYALVYGDY- 167 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~- 167 (286)
++|.|+||+||||+|+++.|+..+...+.+.. +-++..+..+.- .......+.+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istG---------------------dllR~~i~~~t~lg~~~~~~~~~G~lv 59 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTG---------------------DILREAVQKGTPLGKKAKEYMERGELV 59 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH---------------------HHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHH---------------------HHHHHHHHhcChhhhhHHHHHhcCCcC
Confidence 46899999999999999999998753333222 222222211110 0000011110
Q ss_pred -cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHH-------hCCCcEEEEEecCCHHHHHHHHHHhc-------------
Q 043263 168 -KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI-------LGDSAVFVFLAAESEMALVERLVERK------------- 226 (286)
Q Consensus 168 -~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral-------~~~~~~~Illd~~~~~~l~~rl~~r~------------- 226 (286)
..+..+.+.+.+.+....+++|-+.-+..|.++ -..+..+|+|+.+ .+.+.+|+..|.
T Consensus 60 pd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~ 138 (206)
T 3sr0_A 60 PDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKY 138 (206)
T ss_dssp CHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred CHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeec
Confidence 011223445555556668888855333333332 1256788999997 888889998762
Q ss_pred -------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 -------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 -------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.+.+|+..+..+..++ +....+.++.++++++++++|.+++..
T Consensus 139 ~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 139 NPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp BCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred cCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 236788999999877654322 233455678788999999999998753
No 107
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.25 E-value=1.2e-11 Score=102.57 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=53.5
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263 202 GDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA 277 (286)
Q Consensus 202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~ 277 (286)
..++.+|||+++ .+.+.+|+.+|.+.+.+.+..++..+....++...+|.+|. ++++++++.++|.++++....
T Consensus 124 ~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~ad~vId-~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 124 KKANRVLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVID-NNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp GGCSEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHHHHHCSEEEE-CSSCTTSHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEE-CCCCHHHHHHHHHHHHHHHHH
Confidence 346789999986 88888999888666777777776654332233356787664 446899999999998887654
No 108
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.25 E-value=2.3e-11 Score=105.07 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=63.2
Q ss_pred CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263 183 YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~ 262 (286)
..+++++....- ..+...++.+|||+++ .+.+.+|+.+|.+.+.+.+..++..+....++...||.||. ++++++
T Consensus 182 ~~vIveg~~l~~---~~~~~~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~~~AD~vId-n~~s~e 256 (281)
T 2f6r_A 182 TLCVIDAAMLLE---AGWQSMVHEVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLS-TLWESH 256 (281)
T ss_dssp CEEEEECTTTTT---TTGGGGCSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHHHTCSEEEE-CSSCHH
T ss_pred CEEEEEechhhc---cchHHhCCEEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhHhhCCEEEE-CCCCHH
Confidence 456777653110 0111235788999997 78888999888666888887777766443333457897765 457999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 043263 263 SAVKLVESVIDAEKAKV 279 (286)
Q Consensus 263 ~~~~~l~~~i~~~~~~~ 279 (286)
++.++|.+++.......
T Consensus 257 el~~~I~~~l~~l~~~~ 273 (281)
T 2f6r_A 257 VTQSQVEKAWNLLQKRL 273 (281)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998765443
No 109
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.25 E-value=2.2e-13 Score=131.29 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=50.6
Q ss_pred cEEEEeCHHHHHHHHHHhCCCc--EEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 184 DIVLRVDIQGARTLRRILGDSA--VFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~~--~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
..+++|++||+++||+++.+|. .++++|+|+ ...+.+.|.+. .+.|...++|+++. ...||+
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~-------~~~~d~ 614 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-------IKTADY 614 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCSE
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHhCCE
Confidence 4678899999999999997763 566666654 44444444332 24477888999886 356999
Q ss_pred EEEC------CCCCH
Q 043263 253 VVVN------AEGKL 261 (286)
Q Consensus 253 viv~------~~G~i 261 (286)
|+++ ++|++
T Consensus 615 i~~l~~~~g~~~G~i 629 (670)
T 3ux8_A 615 IIDLGPEGGDRGGQI 629 (670)
T ss_dssp EEEEESSSGGGCCEE
T ss_pred EEEecCCcCCCCCEE
Confidence 9999 67754
No 110
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.23 E-value=1.8e-10 Score=91.95 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
+|++++|+|+|||||||++++|++.++... +++.++.. ...+........+.+ ....... ..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--------------i~~d~~~~--~~~~~~~~~g~~~~~-~~~~~~~-~~ 68 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--------------LDGDFLHP--RRNIEKMASGEPLND-DDRKPWL-QA 68 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--------------EEGGGGCC--HHHHHHHHTTCCCCH-HHHHHHH-HH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--------------EeCccccc--hHHHHHhhcCcCCCc-cccccHH-HH
Confidence 489999999999999999999998753211 12222211 111111000000000 0000000 00
Q ss_pred cHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHh
Q 043263 171 PKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEV 244 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~ 244 (286)
....+...+..+..++++.. ......++.. .++ .+|+|+++ .+.+.+|+.+|++. +...+.. +....
T Consensus 69 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~--~~~~~vv~l~~~-~e~~~~R~~~R~~~~~~~~~~~~----~~~~~ 141 (175)
T 1knq_A 69 LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREG--NPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVT----QFETL 141 (175)
T ss_dssp HHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTT--CTTEEEEEEECC-HHHHHHHHHTSTTCCCCHHHHHH----HHHHC
T ss_pred HHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhc--CCCEEEEEEECC-HHHHHHHHHhccCCCCchHHHHH----HHHhh
Confidence 11223334445666777642 2222333322 234 78889986 88899999988643 2333332 22222
Q ss_pred hc---cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 245 QH---VKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 245 ~~---~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
+. ...+|.+|. ++++++++.++|.+.+.
T Consensus 142 ~~~~~~~~~~~~Id-~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 142 QEPGADETDVLVVD-IDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CCCCTTCTTEEEEE-CSSCHHHHHHHHHHHHH
T ss_pred hCcccCCCCeEEEe-CCCCHHHHHHHHHHHHh
Confidence 22 234666664 45899999999988775
No 111
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.23 E-value=1.1e-10 Score=96.58 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCccee-eeeecccCCCCCCcCCcceeeeCHHHHHHHhhc------cch---hhh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF-VVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK------NEL---LEY 160 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~-~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~------~~~---~~~ 160 (286)
+|.+|+|.|++||||||+++.|...+...+. .+ ..+|.|. |. ++ .+.++..+.. ..+ .+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~-~t----~~----g~~ir~~l~~~~~~~~~~~~~~~e~ 71 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPG-GT----QL----AEKLRSLLLDIKSVGDEVITDKAEV 71 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSC-SS----HH----HHHHHHHHHSTTTTTTCCCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCC-CC----HH----HHHHHHHHhcccccccccCChHHHH
Confidence 3899999999999999999999987653333 22 3445552 11 11 1222333221 011 111
Q ss_pred heecccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHH
Q 043263 161 ALVYGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERL 222 (286)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl 222 (286)
..++.+......+.|..++..|..+++|- +...+..+... ...|+++||||.+ .+...+|+
T Consensus 72 lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~Ri 150 (213)
T 4tmk_A 72 LMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRA 150 (213)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHH
Confidence 12222211122334666788888888862 22333222222 2479999999997 77888999
Q ss_pred HHhcCCC-----HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 223 VERKTEN-----REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 223 ~~r~~~t-----~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.+|++.+ ......++......... .....++++.+++++++.++|.+.+.....+
T Consensus 151 ~~R~~~dr~E~~~~~f~~rv~~~y~~la~-~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 151 RARGELDRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp HHHSSCCTTTTSCHHHHHHHHHHHHHHHH-TCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCccchhhhHHHHHHHHHHHHHHHHH-HCCcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 8875421 12334444444333221 1244666788889999999999999887654
No 112
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.23 E-value=7.8e-11 Score=95.43 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhh-----ccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATAREEVQ-----HVKNFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~~~~~~-----~~~~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
.+..+|+|+++ .+.+.+|+.+|+. .+.+.+..++..+..... +...++.++++.+++++++.++|.+.
T Consensus 113 ~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 191 (196)
T 1tev_A 113 DVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQI 191 (196)
T ss_dssp EEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 35678899987 7888899877642 145666666665554432 12346665667778999999999988
Q ss_pred HHH
Q 043263 272 IDA 274 (286)
Q Consensus 272 i~~ 274 (286)
+..
T Consensus 192 l~~ 194 (196)
T 1tev_A 192 FDK 194 (196)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 113
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.23 E-value=1.9e-10 Score=94.05 Aligned_cols=172 Identities=13% Similarity=0.155 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcc-eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chh---hhheecc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELL---EYALVYG 165 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~---~~~~~~~ 165 (286)
+|.+|+|+|++||||||+++.|+..+..+ ...+.. +..+...| +.++..+..+ .+- ....+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~----~~~~~~~g--------~~i~~~~~~~~~~~~~~~~~l~~~ 70 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF----PQRSTVTG--------KMIDDYLTRKKTYNDHIVNLLFCA 70 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES----SCTTSHHH--------HHHHHHHTSSCCCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec----CCCCCcHH--------HHHHHHHhcCCCCCHHHHHHHHHH
Confidence 48899999999999999999999876322 222221 11000000 1112221111 010 0000000
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCHHH-----------HHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC--C
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDIQG-----------ARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE--N 229 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~q~-----------v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~--t 229 (286)
+.+.. .+.+...+..+..++++.-... ......+ ...|+.+|+||++ .+.+.+ +|+.. .
T Consensus 71 ~r~~~-~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~---~R~~d~~e 145 (204)
T 2v54_A 71 NRWEF-ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR---NVGEEIYE 145 (204)
T ss_dssp HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT---CCSSSTTC
T ss_pred HHHHH-HHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh---hcCccccc
Confidence 11111 1344555667777777643210 1111222 1357889999998 555544 34221 2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263 230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV 279 (286)
Q Consensus 230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~ 279 (286)
...+..++..+..+.......+.++++.+++++++.++|.+.+.......
T Consensus 146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~ 195 (204)
T 2v54_A 146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV 195 (204)
T ss_dssp CSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence 12566667665544432333566777778899999999999998766543
No 114
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.22 E-value=2.7e-10 Score=92.19 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=45.3
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.++.+|+|+++ .+.+.+|+.+|+..+...+..++........... ...++++++++++++.+++.+++..
T Consensus 122 ~~d~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 122 KPDITLLLDIP-VDIALRRLKEKNRFENKEFLEKVRKGFLELAKEE-ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp CCSEEEEEECC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCC-HHHHHHHhhccCccchHHHHHHHHHHHHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 57899999997 7888899887655443445555543322211111 1234456678999999999988764
No 115
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.21 E-value=3e-11 Score=100.81 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcc----eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch---hhhhee
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSL----HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL---LEYALV 163 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~----~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~---~~~~~~ 163 (286)
+|.+|+|.|++||||||+++.|...+... +..+ ..+|.|. |.-.| +.++..+.++.+ .+...+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~-~t~~g--------~~ir~~l~~~~~~~~~~~llf 93 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPG-GTRLG--------ETLREILLNQPMDLETEALLM 93 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSS-SSHHH--------HHHHHHHHHSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCC-CChHH--------HHHHHHHHcCCCCHHHHHHHH
Confidence 58999999999999999999999877533 3333 2455563 21111 234444433221 222223
Q ss_pred cccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh
Q 043263 164 YGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVER 225 (286)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r 225 (286)
..+.+....+.+..++..|..+++|- +...+..+..+ ...|+++|+||.+ .+...+|+.+|
T Consensus 94 ~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~-~e~~~~Ri~~R 172 (227)
T 3v9p_A 94 FAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP-PQIASARRGAV 172 (227)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-SSCGGGTTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 33332333345667778888888762 12222222222 2579999999998 56677888876
Q ss_pred cCC----C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 226 KTE----N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 226 ~~~----t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
++. . ......++...............++++.+++++++.++|.+.++.
T Consensus 173 ~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 173 RMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 421 1 123444444443332211233466778888999999999988864
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.20 E-value=4.8e-14 Score=129.60 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=43.6
Q ss_pred hhHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263 65 NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF 121 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~ 121 (286)
...++++||++.|+ ++++.+.+ |++++|+||||||||||+++|+|++....+
T Consensus 116 ~~mi~~~nl~~~y~----~vsl~i~~-Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----KIRMSNFE-GPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp CTHHHHHHHHHHHH----HHHHHSSS-CCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cchhhhhhhhehhh----cCceEeCC-CCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 34689999999997 45666666 999999999999999999999999764444
No 117
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.4e-10 Score=100.35 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=102.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
...|+|+|| ||+|+.+.|...++ .|+++++ ++.+ +..+.|+
T Consensus 145 ~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------------~~r~-----i~~~~fi------------ 186 (308)
T 3kfv_A 145 KRPVVILGP---VADIAMQKLTAEMPDQFEIAET------------------VSRT-----DSPSKII------------ 186 (308)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEEECCC------------------C-------------CC------------
T ss_pred CCeEEEeCc---cHHHHHHHHHHhCccccccccc------------------cccc-----ccCCCee------------
Confidence 456999999 69999988877654 4444433 0110 2222232
Q ss_pred cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHH-HhhccC
Q 043263 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENREELLVRIATARE-EVQHVK 248 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~-~~~~~~ 248 (286)
+.+.+++.+++|..++++++.|.+..++... ..+++||+.||+.+.|.++ ..|.. .+.+.+..+++.+.+ +.....
T Consensus 187 s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~-~~pi~IFI~PPS~eeL~~r-r~R~~~esee~~~r~~~aa~eiE~~~~~ 264 (308)
T 3kfv_A 187 KLDTVRVIAEKDKHALLDVTPSAIERLNYVQ-YYPIVVFFIPESRPALKAL-RQWLAPASRRSTRRLYAQAQKLRKHSSH 264 (308)
T ss_dssp CHHHHHHHHHTTCEEEECCCHHHHHHHHHTT-CCCEEEEEEESCHHHHHHH-HHHHSTTCCCCHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHCCCcEEEEECHHHHHHHHhcC-CCCEEEEEeCCCHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 7788999999999999999999998887654 4569999999999999875 55533 344445444454422 334457
Q ss_pred CCcEEE-ECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 249 NFDYVV-VNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 249 ~~d~vi-v~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
.+|.|| +|++ +++++++|..+|..+..+
T Consensus 265 ~FD~vI~VNDd--le~A~~~L~~iI~~~~~e 293 (308)
T 3kfv_A 265 LFTATIPLNGT--SDTWYQELKAIIREQQTR 293 (308)
T ss_dssp GCSEEEEECSS--STHHHHHHHHHHHHHTTS
T ss_pred cCcEEEEcCCC--HHHHHHHHHHHHHHhcCC
Confidence 899999 8876 999999999999987543
No 118
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.20 E-value=3.1e-11 Score=97.30 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=45.9
Q ss_pred CcEEEEEecCCHHHHHHHHHHhc---C---CCHHHHHHHHHHHHHHh----hccCCCc-EEEECCCCCHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVERK---T---ENREELLVRIATAREEV----QHVKNFD-YVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~---~---~t~~~i~~rl~~~~~~~----~~~~~~d-~viv~~~G~i~~~~~~l~~~i 272 (286)
+..+|+|+++ .+.+.+|+..|. + .+.+.+..|+..+.... +....++ .++++++++++++.++|.+.+
T Consensus 106 ~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 106 LLGVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp EEEEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCEEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 5788999987 788889988764 2 35667777776654331 1122233 455566689999999998776
No 119
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.19 E-value=4.4e-11 Score=101.61 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=52.0
Q ss_pred hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHH------hhccC
Q 043263 180 AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE-----RKTENREELLVRIATAREE------VQHVK 248 (286)
Q Consensus 180 ~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~-----r~~~t~~~i~~rl~~~~~~------~~~~~ 248 (286)
..+..++++|.. +...++.+.++.|||+++ .+.+.+|+.+ +...+.+.+..++...... .....
T Consensus 143 a~~~~~V~~gr~----~~~~v~~~~~~~ifl~A~-~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~ 217 (252)
T 4e22_A 143 REAPGLIADGRD----MGTIVFPDAPVKIFLDAS-SQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVP 217 (252)
T ss_dssp CCSSCEEEEESS----CCCCCSTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCC
T ss_pred hhCCCEEEEece----eceeecCCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhc
Confidence 345567776631 011133566899999998 5555555433 3334666666555433221 12224
Q ss_pred CCcEEEECCCC-CHHHHHHHHHHHHHHH
Q 043263 249 NFDYVVVNAEG-KLDSAVKLVESVIDAE 275 (286)
Q Consensus 249 ~~d~viv~~~G-~i~~~~~~l~~~i~~~ 275 (286)
.+|.+++++++ ++++++++|.++++..
T Consensus 218 ~~d~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 218 AADALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp CTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence 56656666655 8999999999998764
No 120
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.18 E-value=1.3e-10 Score=98.55 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=49.5
Q ss_pred cEEEEEecCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH--Hh----hccCCCcEEE---ECCCCCHHHHHHHHHHH
Q 043263 205 AVFVFLAAESEMALVERLVERK----TENREELLVRIATARE--EV----QHVKNFDYVV---VNAEGKLDSAVKLVESV 271 (286)
Q Consensus 205 ~~~Illd~~~~~~l~~rl~~r~----~~t~~~i~~rl~~~~~--~~----~~~~~~d~vi---v~~~G~i~~~~~~l~~~ 271 (286)
+.+|||+++ .+.+.+|+..|. +.+.+.+..++..... .. .....||.|| ++++++++++.++|.++
T Consensus 152 d~vi~l~~~-~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~ 230 (252)
T 1uj2_A 152 QMKLFVDTD-ADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI 230 (252)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred CeeEEEeCC-HHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence 689999997 777788887764 4577777776665331 11 2345688877 24567899999999998
Q ss_pred HHHHHhcc
Q 043263 272 IDAEKAKV 279 (286)
Q Consensus 272 i~~~~~~~ 279 (286)
+.....+.
T Consensus 231 l~~~~~~~ 238 (252)
T 1uj2_A 231 LNGGPSKR 238 (252)
T ss_dssp HHC-----
T ss_pred Hccchhhh
Confidence 87655433
No 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.18 E-value=2.8e-11 Score=99.61 Aligned_cols=172 Identities=15% Similarity=0.051 Sum_probs=91.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-hh---hhheeccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-LL---EYALVYGD 166 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~~---~~~~~~~~ 166 (286)
+|.+|+|+|++||||||+++.|+..+...++.+ +..+.|..|...| ..++..+..+. +- ....+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~g--------~~i~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPNRETGIG--------QIISKYLKMENSMSNETIHLLFSAN 79 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHH--------HHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCCCCCcHH--------HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 488999999999999999999998764333333 2233332222111 11111111110 00 00000000
Q ss_pred ccCccHHHHHHHHhcCCcEEEEeCHHH------H------HHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh-cCCCH
Q 043263 167 YKGIPKKQIREYMAKGYDIVLRVDIQG------A------RTLRRI---LGDSAVFVFLAAESEMALVERLVER-KTENR 230 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~------v------~iaral---~~~~~~~Illd~~~~~~l~~rl~~r-~~~t~ 230 (286)
.... .+.+...+..+..++++..... . ..+..+ +..++.+|+|+++ .+.+.+|+..+ .+...
T Consensus 80 ~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~r~~~ 157 (212)
T 2wwf_A 80 RWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVP-PNYAQNRSDYGEEIYEK 157 (212)
T ss_dssp HHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECC-TTGGGGSTTTTSSTTCS
T ss_pred HHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCC-HHHHHHhhccCcccccH
Confidence 0001 1234555666777777754311 0 111111 1357889999997 56677887654 22233
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..+..++..+..+... ....++++++++++++.++|.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~--~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 158 VETQKKIYETYKHFAH--EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHHHGGGGTT--CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhc--cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 4555666554433322 333455566689999999999988655
No 122
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.17 E-value=6.4e-10 Score=88.85 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeee-c---ccCCCCC-CcCCcceee----eCHHHHHHHhhccchhhhhe
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTA-T---SRPMRPG-EVNGKDYFF----VSKEEFLQMVDKNELLEYAL 162 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~-~---~r~~~~G-~~~g~~~~~----~~~~~~~~~i~~~~~~~~~~ 162 (286)
+.+|.|+|++||||||+++.|+..++...+.+.. . .+.+..+ +..|.++.. .....++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 69 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFR------------- 69 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHH-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHH-------------
Confidence 6789999999999999999999876421111110 0 1111100 011111100 0000000
Q ss_pred ecccccCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263 163 VYGDYKGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTENREELLVRI 237 (286)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl 237 (286)
..+....+.+...+..|..+++++.. ......+..+...+ .+|+|+++ .+.+.+|+.+|+........
T Consensus 70 ---~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~r~~~~~~~~~--- 142 (178)
T 1qhx_A 70 ---ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAA--- 142 (178)
T ss_dssp ---HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHH---
T ss_pred ---HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHHHHHHhhCCcccchhh---
Confidence 00111112344556677778887632 11233444554434 56778875 88999999888654333211
Q ss_pred HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.+.........+|.+|..++.++++++++|.+.+
T Consensus 143 -~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 143 -KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp -HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred -hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 1111111123488877666558999988887643
No 123
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.16 E-value=6e-11 Score=98.60 Aligned_cols=174 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-ch---hhhheecc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-EL---LEYALVYG 165 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~---~~~~~~~~ 165 (286)
+|.+|+|.|++||||||+++.|...+.. .+..+..++|.|. |. ++ .+.++..+... .+ .+...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t----~~----g~~ir~~l~~~~~~~~~~e~llf~a 90 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GT----LL----NESVRNLLFKAQGLDSLSELLFFIA 90 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SS----HH----HHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CC----hH----HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4899999999999999999999987754 4444444455564 21 11 12223322211 01 11111111
Q ss_pred cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhcCC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERKTE 228 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~~~ 228 (286)
+.+....+.+..++..|..+++|- +...+..+..+. ..|+++|+||.+ .+...+|+ ++++.
T Consensus 91 ~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rdr~ 168 (223)
T 3ld9_A 91 MRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKNGY 168 (223)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred HHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccCcc
Confidence 111112223555677777777652 223333333333 379999999998 56666777 44332
Q ss_pred CH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 229 NR--EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 229 t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.. .....++.....+.........++++.+++++++ ++|.+.++...
T Consensus 169 E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 169 EFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 22 3344555555443322223356667888899999 98888887654
No 124
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.15 E-value=2.2e-11 Score=99.83 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=51.5
Q ss_pred CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
++.+|+|+++ .+.+.+|+.+| +.+.+.+..++..+....++...+|.+| +++++++++.+++.+++....
T Consensus 124 ~~~~i~l~~~-~e~~~~Rl~~R-~~~~~~~~~~~~~~~~~~~~~~~ad~vI-d~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 124 YDKLIVVYAP-YEVCKERAIKR-GMSEEDFERRWKKQMPIEEKVKYADYVI-DNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp SSEEEEECCC-HHHHHHHHHHT-CCCHHHHHHHHTTSCCHHHHGGGCSEEC-CCSSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECC-HHHHHHHHHHc-CCCHHHHHHHHHhCCChhHHHhcCCEEE-ECCCCHHHHHHHHHHHHHHHh
Confidence 5788999987 78888999888 4577777777766544333345688654 556899999999999887543
No 125
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.15 E-value=2.5e-10 Score=92.87 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=42.6
Q ss_pred CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE--VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~--~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
.+.+|+++++ .+...+|+ +..+++. .++...||.||.|+ |+++++.+++.++++..
T Consensus 130 ~d~vi~v~a~-~e~r~~Rl--------------i~~q~~~~~~~~~~~AD~vI~n~-~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 130 CDHVITVVAS-RETILKRN--------------READRRLKFQEDIVPQGIVVANN-STLEDLEKKVEEVMKLV 187 (192)
T ss_dssp CSEEEEEECC-HHHHHHHC--------------SSHHHHHTTCTTCCCCSEEEECS-SCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC-HHHHHHHH--------------HHhcCCchhhhHHhcCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 3688999997 77777777 2344444 45567899998655 89999999999998876
No 126
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.15 E-value=9.7e-13 Score=119.71 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=52.0
Q ss_pred EEEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263 186 VLRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVN 256 (286)
Q Consensus 186 v~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~ 256 (286)
+++|++|++.+|++++.+| +++|| ||+.....+.+.|.+.. +.+...++|+... ...||+++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~-------~~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQI-------AARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-------HTTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-------HhhcCeEEEE
Confidence 4678899999999999888 88777 66666667777776643 3466778998755 3679999999
Q ss_pred ----CCCC
Q 043263 257 ----AEGK 260 (286)
Q Consensus 257 ----~~G~ 260 (286)
++|+
T Consensus 369 ~k~~~~G~ 376 (415)
T 4aby_A 369 EKQVEDGR 376 (415)
T ss_dssp EEEEETTE
T ss_pred EEeccCCc
Confidence 7774
No 127
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.15 E-value=1.2e-12 Score=108.02 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc-----------eeeeCHHHHHHHhhccchhh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD-----------YFFVSKEEFLQMVDKNELLE 159 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~-----------~~~~~~~~~~~~i~~~~~~~ 159 (286)
+|++++|+||||||||||+++|+|+ . |.+|++.+.+ +.++.+.....+ . .+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~------------p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl-~--~~~~ 84 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A------------LQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKI-D--PYLR 84 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-H------------HHTTSCSEEEEEECSCCTTCCCCSSCC-------C--TTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-C------------CcCCeeeeEEecCCchhhhcceEEecCCHHHHH-H--HHHH
Confidence 4999999999999999999999998 6 3333332111 111111100000 0 0000
Q ss_pred hheecccccC-ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCC---HHHHHHHHHHh-cCCCHHHHH
Q 043263 160 YALVYGDYKG-IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAES---EMALVERLVER-KTENREELL 234 (286)
Q Consensus 160 ~~~~~~~~~~-~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~---~~~l~~rl~~r-~~~t~~~i~ 234 (286)
..+..... ...+.+.+.++.+. |++|++++||+++.+| -+++||.|+ ...+.+.|.+. .+.+.. ++
T Consensus 85 --~~~~~~~~~~~~~~~~~~l~~gl-----Gq~qrv~lAraL~~~p-~lllLDEPts~~~~~l~~~l~~l~~g~tii-vt 155 (208)
T 3b85_A 85 --PLHDALRDMVEPEVIPKLMEAGI-----VEVAPLAYMRGRTLND-AFVILDEAQNTTPAQMKMFLTRLGFGSKMV-VT 155 (208)
T ss_dssp --HHHHHHTTTSCTTHHHHHHHTTS-----EEEEEGGGGTTCCBCS-EEEEECSGGGCCHHHHHHHHTTBCTTCEEE-EE
T ss_pred --HHHHHHHHhccHHHHHHHHHhCC-----chHHHHHHHHHHhcCC-CEEEEeCCccccHHHHHHHHHHhcCCCEEE-EE
Confidence 00000001 11233455555532 9999999999999555 556666663 44444444443 223455 77
Q ss_pred HHHHH
Q 043263 235 VRIAT 239 (286)
Q Consensus 235 ~rl~~ 239 (286)
|+++.
T Consensus 156 Hd~~~ 160 (208)
T 3b85_A 156 GDITQ 160 (208)
T ss_dssp EC---
T ss_pred CCHHH
Confidence 76554
No 128
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.15 E-value=3.3e-09 Score=86.57 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=88.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheec
Q 043263 86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVY 164 (286)
Q Consensus 86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (286)
+..+..+.+|+|+|++||||||+++.|+..+....+......+. ... +..+ ...+...+..+.+....
T Consensus 14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~----~~~~----g~~i~~~~~~g~~~~~~--- 82 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEE----GTKL----GVEAKRYLDAGDLVPSD--- 82 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHT----TCHH----HHHHHHHHHHTCCCCHH---
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHc----CChH----HHHHHHHHHcCCcccHH---
Confidence 33344578999999999999999999998654211111110010 000 0000 01111111111110000
Q ss_pred ccccCccHHHHHHHH---hcCCcEEEEeC---HHHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcC--CCHHH
Q 043263 165 GDYKGIPKKQIREYM---AKGYDIVLRVD---IQGARTLRRIL----GDSAVFVFLAAESEMALVERLVERKT--ENREE 232 (286)
Q Consensus 165 ~~~~~~~~~~i~~~~---~~g~~~v~~~~---~q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~ 232 (286)
.....+.+.+ ..+..+++++. ......+..++ ..+..+|+|+++ .+.+.+|+.+|++ .+.+.
T Consensus 83 -----~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~ 156 (201)
T 2cdn_A 83 -----LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDV 156 (201)
T ss_dssp -----HHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHH
T ss_pred -----HHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHH
Confidence 0011111211 23556777752 21122222222 236788999997 7788899988754 35677
Q ss_pred HHHHHHHHHHHh----hccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEV----QHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 233 i~~rl~~~~~~~----~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
+..++..+.... +....++ ++++++++++++.++|.++++
T Consensus 157 ~~~r~~~~~~~~~~~~~~~~~~~-~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 157 ILNRMKVYRDETAPLLEYYRDQL-KTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTTE-EEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHhcCcE-EEEeCCCCHHHHHHHHHHHHc
Confidence 777777665432 1122334 444666899999999987763
No 129
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.12 E-value=8.8e-11 Score=97.61 Aligned_cols=77 Identities=19% Similarity=0.394 Sum_probs=51.5
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcC-----------------------------CCHHHHHHHHHHHHHHhhcc-CCC--
Q 043263 203 DSAVFVFLAAESEMALVERLVERKT-----------------------------ENREELLVRIATAREEVQHV-KNF-- 250 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~-----------------------------~t~~~i~~rl~~~~~~~~~~-~~~-- 250 (286)
.|+++|+||++ .+.+.+|+..|.. ...+.+..|+.....+...+ ..+
T Consensus 108 ~~~~vi~L~~~-~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~ 186 (222)
T 1zak_A 108 RPDTFILLDVP-DELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN 186 (222)
T ss_dssp CCSEEEEEECC-HHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECC-HHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999997 7788899875431 13456777777665433221 111
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 251 DYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
..+.++.++++++++++|.+.+.....+..
T Consensus 187 ~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~ 216 (222)
T 1zak_A 187 IIVKVQGDATVDAVFAKIDELLGSILEKKN 216 (222)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhhccccc
Confidence 245566778999999999999987654443
No 130
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.12 E-value=2.2e-10 Score=95.91 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHHhhc----cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 202 GDSAVFVFLAAESEMALVERLVERKTE--N--REELLVRIATAREEVQH----VKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 202 ~~~~~~Illd~~~~~~l~~rl~~r~~~--t--~~~i~~rl~~~~~~~~~----~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
..|+++|+||.+ .+...+|+.+|+.. . ......++..+..+... ...++.++++.+++++++.++|.++++
T Consensus 145 ~~pD~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 145 VQADLIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSES 223 (230)
T ss_dssp CCCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC--------------
T ss_pred CCCCEEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 468999999997 77888998877542 1 11456677766655421 234555777888899999999999887
Q ss_pred HHH
Q 043263 274 AEK 276 (286)
Q Consensus 274 ~~~ 276 (286)
...
T Consensus 224 ~~~ 226 (230)
T 2vp4_A 224 SIF 226 (230)
T ss_dssp ---
T ss_pred HHh
Confidence 654
No 131
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.11 E-value=1.3e-10 Score=94.85 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~ 276 (286)
.++.+|+|+++ .+.+.+|+.+|.+.+...+..++..+....++...+|.+| +++++++++.+++.+++....
T Consensus 124 ~~d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~~~~ad~vI-d~~~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 124 RLHGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVL-ENTGSLEDLERALKAVLAELT 195 (203)
T ss_dssp GSSEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHHHHHCSEEE-CCSSHHHHHHHHHHHHHHSCC
T ss_pred hCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHCCChhHHHHhCCEEE-ECCCCHHHHHHHHHHHHHHHH
Confidence 35789999986 7788899988865555556555554332222234678654 666789999999999887543
No 132
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.10 E-value=1.7e-09 Score=88.87 Aligned_cols=175 Identities=19% Similarity=0.244 Sum_probs=91.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-h---hhhheecccc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-L---LEYALVYGDY 167 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~---~~~~~~~~~~ 167 (286)
|.+|+|-|+.||||||+++.|+..+.. +..+. .++.|. |. ++ .+.++..+.++. + .+...+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~-~~~eP~-~t----~~----g~~ir~~l~~~~~~~~~~~~lLf~a~R 70 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI-MTREPG-GV----PT----GEEIRKIVLEGNDMDIRTEAMLFAASR 70 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE-EEESST-TC----HH----HHHHHHHHHSSCCCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE-EeeCCC-CC----hH----HHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 578999999999999999999987642 11111 233342 11 11 122233322211 0 1111111111
Q ss_pred cCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC-
Q 043263 168 KGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE- 228 (286)
Q Consensus 168 ~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~- 228 (286)
.....+.+..++.+|..++++- +...+..+... ...|+++||||.+ .+...+|+.+|++.
T Consensus 71 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~~~ 149 (205)
T 4hlc_A 71 REHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRDQ 149 (205)
T ss_dssp HHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCCcc
Confidence 1112234556677787777752 12222222221 2368999999998 67777998776542
Q ss_pred ---CHH--HHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263 229 ---NRE--ELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278 (286)
Q Consensus 229 ---t~~--~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~ 278 (286)
..+ ....++...............++++.+++++++.++|.+.+.....+
T Consensus 150 dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 150 NRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred cchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 111 22334433332222112223566677789999999999988876543
No 133
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.10 E-value=1.3e-10 Score=101.12 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCCHHHH---HHHHHhcc-CcceeeeeecccCCCCCCcCCcce--eeeCHHHHHHHhhccchhhhheecc
Q 043263 92 PLIIVISGPSGVGKDTV---IKKLRESR-DSLHFVVTATSRPMRPGEVNGKDY--FFVSKEEFLQMVDKNELLEYALVYG 165 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl---~~~L~~~~-~~~~~~i~~~~r~~~~G~~~g~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (286)
+.-|+|+||++.|--++ -+.|...+ ..|.+.+.+| |.+..-...++.+ .+.....+...+....+.+
T Consensus 142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~e------ 214 (337)
T 4dey_A 142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAE------ 214 (337)
T ss_dssp SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHH------
T ss_pred CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHH------
Confidence 44599999999998753 23333222 2345555433 4343333333321 0111111111112222221
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCHH-HHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDIQ-GARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~q-~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~ 244 (286)
+....+.+.+....|..++++.+.| .+..++..+ ..+++||+-+|+.+.|.+||..|+......+..+++.+..+.
T Consensus 215 --v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~-~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~ 291 (337)
T 4dey_A 215 --VQSEIERIFELARTLQLVVLDADTINHPAQLSKTS-LAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLA 291 (337)
T ss_dssp --HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSS-CCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred --HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcC-CCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 1112344455566889999999998 877777655 457899999999999999999886522333444444444444
Q ss_pred hc-cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263 245 QH-VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR 280 (286)
Q Consensus 245 ~~-~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~ 280 (286)
.. ...+|.||+|++ +++++++|..+|..+...++
T Consensus 292 ~~~~~~FDyvIVNDd--Le~A~~~L~~iI~~~~~~~h 326 (337)
T 4dey_A 292 QCPPELFDVILDENQ--LEDACEHLADYLEAYWKATH 326 (337)
T ss_dssp HSCGGGCSEEECCSS--HHHHHHHHHHHHHHHHHHHS
T ss_pred hhCcccCCEEEECCC--HHHHHHHHHHHHHHHHhccC
Confidence 33 578999999887 99999999999998765554
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.10 E-value=6.1e-10 Score=90.07 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=62.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-ch--hhhh-eeccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-EL--LEYA-LVYGD 166 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~--~~~~-~~~~~ 166 (286)
++.+|+|+|++||||||+++.|+..+. .. .++.+.+...+... .. .++. .....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~--------------------~~--~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 61 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR--------------------LP--LLSKDAFKEVMFDGLGWSDREWSRRVGAT 61 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT--------------------CC--EEEHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC--------------------Ce--EecHHHHHHHHHHhcCccchHHHHHhhHH
Confidence 478999999999999999999998653 11 12223222221110 00 0000 00000
Q ss_pred ccCccHHHHHHHHhcCCcEEEEeCHHH---H-HH--HHHHhCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263 167 YKGIPKKQIREYMAKGYDIVLRVDIQG---A-RT--LRRILGDSAVFVFLAAESEMALVERLVERK 226 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~---v-~i--aral~~~~~~~Illd~~~~~~l~~rl~~r~ 226 (286)
.+....+.+...+..|..+++++.... . .+ +......+.++|+|+++ .+.+.+|+.+|+
T Consensus 62 ~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~ 126 (193)
T 2rhm_A 62 AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRI 126 (193)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhc
Confidence 111122334555677888888865411 1 11 22222346688899986 888889998775
No 135
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.10 E-value=2e-10 Score=91.40 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=35.7
Q ss_pred cEEEEEecCCHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 205 AVFVFLAAESEMALVERLVERKTE-------N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 205 ~~~Illd~~~~~~l~~rl~~r~~~-------t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.++++++++ .+.+.+|+.+|... . ...+...+....+ .+...+|.+|.++++++++++++|.+.+.
T Consensus 98 ~~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~--~~~~~a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 98 GVVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANERNP--LYEEIADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp SEEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHHHH--HHHHHCSEEC-----CHHHHHHHHHHHHC
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHH--HHHhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 678899987 77888888765211 1 3444433332111 11234677775555789999999988774
No 136
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.09 E-value=5.7e-11 Score=97.22 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|++|+|+|+|||||||++++|++.+. . . |.-..+++.+.+...+... .+.... ..... .
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~------------~----G~~~~~~d~d~~~~~~~~~~~~~~~~-~~~~~-~ 84 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-Q------------K----GKLCYILDGDNVRHGLNRDLSFKAED-RAENI-R 84 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-H------------T----TCCEEEEEHHHHTTTTTTTCCSSHHH-HHHHH-H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h------------c----CceEEEecCchhhhHhhcccCcChHH-HHHHH-H
Confidence 499999999999999999999999863 1 1 1111122222221111000 000000 00000 0
Q ss_pred ccHHHHHHHHhcCCcEEEEe---CHHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHH------HHhcCC--CHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRV---DIQGARTLRRILGD-SAVFVFLAAESEMALVERL------VERKTE--NREELLVRI 237 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~---~~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl------~~r~~~--t~~~i~~rl 237 (286)
...+........+..++... .......++.++.. +.+.|||+++ .+.+.+|+ ..+.+. ....+.
T Consensus 85 ~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~-~e~~~~R~~~~l~~~~r~~~~~~~~~~~--- 160 (200)
T 3uie_A 85 RVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVP-LSVCEARDPKGLYKLARAGKIKGFTGID--- 160 (200)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHCTTSHHHHHHTTSSCSCBTTT---
T ss_pred HHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHhcccchHHHHhcCCCCCCCCCC---
Confidence 00111222234455555432 22344556666533 3356889987 77777775 222211 101110
Q ss_pred HHHHHHhhccCCCcEEEECCC-CCHHHHHHHHHHHHHHH
Q 043263 238 ATAREEVQHVKNFDYVVVNAE-GKLDSAVKLVESVIDAE 275 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~~ 275 (286)
. ..+....+|.+|..++ .++++++++|.+.++..
T Consensus 161 -~---~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 161 -D---PYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp -B---CCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred -C---cCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 0 0111124566655555 48999999999988654
No 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.09 E-value=5.1e-09 Score=84.41 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH-HHHHhhccchhhhheecccc----
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE-FLQMVDKNELLEYALVYGDY---- 167 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~---- 167 (286)
.+|+|+|++||||||+++.|+..+... |..+...+..+ +...+....+......+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ-----------------GINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT-----------------TCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-----------------CceEEEEECChHHHHHHHhcccccchhhhhcCCHHH
Confidence 579999999999999999999876411 22222222111 11111000000000000000
Q ss_pred ----cCccHHHHHHHH--hcCCcEEEEeCH----H-H------HHHHHHHhCCCcEEEEEecCCHHHHHHHHHH--hcC-
Q 043263 168 ----KGIPKKQIREYM--AKGYDIVLRVDI----Q-G------ARTLRRILGDSAVFVFLAAESEMALVERLVE--RKT- 227 (286)
Q Consensus 168 ----~~~~~~~i~~~~--~~g~~~v~~~~~----q-~------v~iaral~~~~~~~Illd~~~~~~l~~rl~~--r~~- 227 (286)
.......+...+ ..+..+++++.. | . ....+.+ .+..+|+|+++.+..+.+|+.. |+.
T Consensus 65 ~~~~~~~~~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~ 142 (194)
T 1nks_A 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRN 142 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCC
Confidence 000011233444 567778887521 1 0 1233333 4788999999854444455776 653
Q ss_pred --CCHHHH--HHHHHHHHHHhhc-cCCCcEEEE-CCCCCHHHHHHHHHHHH
Q 043263 228 --ENREEL--LVRIATAREEVQH-VKNFDYVVV-NAEGKLDSAVKLVESVI 272 (286)
Q Consensus 228 --~t~~~i--~~rl~~~~~~~~~-~~~~d~viv-~~~G~i~~~~~~l~~~i 272 (286)
.+...+ ..++.....+... ...++.+++ ++++++++++++|.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 143 DYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 233333 2333333322211 113555677 77788999999998765
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.09 E-value=4.7e-10 Score=90.27 Aligned_cols=161 Identities=12% Similarity=0.069 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc-ccC-
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD-YKG- 169 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~- 169 (286)
+.+|+|+|++||||||+++.|+..++ . .+++.+.+........+.+....++. .+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--------------------~--~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~ 62 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--------------------R--ILYDSDKEIEKRTGADIAWIFEMEGEAGFRR 62 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--------------------C--CEEEHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--------------------C--CEEEChHHHHHHcCCChhhHHHHhCHHHHHH
Confidence 67899999999999999999998753 1 12233332222111111111011110 111
Q ss_pred ccHHHHHHHHhcCCcEEEEe-CHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH--HHh---cCCCHHHHHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRV-DIQGARTLRRILGDSAVFVFLAAESEMALVERL--VER---KTENREELLVRIATAREE 243 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~-~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl--~~r---~~~t~~~i~~rl~~~~~~ 243 (286)
...+.+.........++..+ ..-.-...+..+.....+|+|+++ .+.+.+|+ ..+ ...+......++.....+
T Consensus 63 ~~~~~~~~~~~~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~ 141 (185)
T 3trf_A 63 REREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEI 141 (185)
T ss_dssp HHHHHHHHHHHSSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEecCCceecCHHHHHHHHhCCcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 11122333333333333322 110001112222223588999997 78888999 432 212222222333332222
Q ss_pred hhc--cCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 244 VQH--VKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 244 ~~~--~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
... ...+|.+|.+++..+++++++|.+.+...
T Consensus 142 r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 142 RKPLYQAMADLVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp HHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred HHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 111 13488888666558999999998877643
No 139
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.08 E-value=1.6e-09 Score=89.97 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=49.8
Q ss_pred CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH----HHhcC-CCHHHHHHHHHH----HHH-HhhccCCC-
Q 043263 182 GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERL----VERKT-ENREELLVRIAT----ARE-EVQHVKNF- 250 (286)
Q Consensus 182 g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl----~~r~~-~t~~~i~~rl~~----~~~-~~~~~~~~- 250 (286)
+..+++++.. ++++++..++++|||+++ .+.+.+|+ .+++. .+.+.+..++.. +.. ..++...+
T Consensus 123 ~~~~vldg~~----~~~~~~~~~d~~i~l~~~-~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~ 197 (227)
T 1cke_A 123 LPGLIADGRD----MGTVVFPDAPVKIFLDAS-SEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAA 197 (227)
T ss_dssp TTCEEEEESS----CCCCCCTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCT
T ss_pred CCCEEEECCC----ccceEecCCCEEEEEeCC-HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCC
Confidence 4566777651 223455678899999997 56666763 24432 144444333332 222 22333333
Q ss_pred cEEEECCC-CCHHHHHHHHHHHHHHH
Q 043263 251 DYVVVNAE-GKLDSAVKLVESVIDAE 275 (286)
Q Consensus 251 d~viv~~~-G~i~~~~~~l~~~i~~~ 275 (286)
+.++++++ ++++++.++|.+.++..
T Consensus 198 ~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 198 DALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp TCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 33455555 79999999999988754
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.06 E-value=4.7e-10 Score=92.10 Aligned_cols=173 Identities=14% Similarity=0.021 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceee-eeecccCCCCCCc--CC---cce-eeeCHHHHHHHhhccchhhhhee
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFV-VTATSRPMRPGEV--NG---KDY-FFVSKEEFLQMVDKNELLEYALV 163 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~-i~~~~r~~~~G~~--~g---~~~-~~~~~~~~~~~i~~~~~~~~~~~ 163 (286)
+|.+|+|+|++||||||++++|++.+..+.+. ....-+....... .+ .++ ..++...+...+.. .+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~l~~~~- 96 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISC--WMESAR- 96 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHH--HHHHHT-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHH--HHhCCC-
Confidence 38999999999999999999999976322111 1100000000000 00 000 00122222221100 000000
Q ss_pred cccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCC---HHHHH-HHHHH
Q 043263 164 YGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTEN---REELL-VRIAT 239 (286)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t---~~~i~-~rl~~ 239 (286)
. +.... .+.. ......++++|-... ..+.+...++.++++|.+ .+...+|+..|+... ...+. +....
T Consensus 97 ~---~~~~~-~~~~-~~~~~~vi~eg~~~~--~~~~~~~~~d~~i~l~~~-~~~~~~R~~~R~~~~e~~~~~~~~~~~~~ 168 (207)
T 2qt1_A 97 H---SVVST-DQES-AEEIPILIIEGFLLF--NYKPLDTIWNRSYFLTIP-YEECKRRRSTRVYQPPDSPGYFDGHVWPM 168 (207)
T ss_dssp T---SSCCC-------CCCCEEEEECTTCT--TCGGGTTTCSEEEEEECC-HHHHHHHHHHSCCSSCCCTTHHHHTHHHH
T ss_pred C---CCcCC-Ceee-cCCCCEEEEeehHHc--CcHHHHHhcCeeEEEECC-HHHHHHHHHHcCCCccchHHHHHHHHhHH
Confidence 0 00000 0011 223445666664211 012233456788999997 667778887764211 11122 22222
Q ss_pred HHHH-hhccCCCcEEE-ECCCCCHHHHHHHHHHHHHH
Q 043263 240 AREE-VQHVKNFDYVV-VNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 240 ~~~~-~~~~~~~d~vi-v~~~G~i~~~~~~l~~~i~~ 274 (286)
.... ......+|+++ ++++++++++.+++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 169 YLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 1111 12234567664 45667899999999888753
No 141
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.06 E-value=3.7e-11 Score=94.69 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=38.5
Q ss_pred hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..++++.|+. ++.++++.+.+ |++++|+||||||||||+++|++++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~-Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEK-AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSS-CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccccccCC-CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566777764 56677777777 9999999999999999999999987
No 142
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.06 E-value=2e-10 Score=99.33 Aligned_cols=165 Identities=13% Similarity=0.207 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc-----cchhhhh-eec
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK-----NELLEYA-LVY 164 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~-----~~~~~~~-~~~ 164 (286)
++.++.|+|||||||||+++.|+..++... ..++.+.++..... ..+.++. .++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~--------------------~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~ 91 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNV--------------------IVIDNDTFKQQHPNFDELVKLYEKDVVKHV 91 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCC--------------------EEECTHHHHTTSTTHHHHHHHHGGGCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------EEEechHhHHhchhhHHHHHHccchhhhhh
Confidence 378999999999999999999987653111 11222222211100 0011111 112
Q ss_pred ccccCc-cHHHHHHHHhcCCcEEEEeCHHHHH---HHHHHhCC---CcEEEEEecCCHHHH----HHHHHHh-------c
Q 043263 165 GDYKGI-PKKQIREYMAKGYDIVLRVDIQGAR---TLRRILGD---SAVFVFLAAESEMAL----VERLVER-------K 226 (286)
Q Consensus 165 ~~~~~~-~~~~i~~~~~~g~~~v~~~~~q~v~---iaral~~~---~~~~Illd~~~~~~l----~~rl~~r-------~ 226 (286)
++.++. ....+...+..|.++++++..+... ..+..+.. +..+++++.+ .+.. .+|+.+| +
T Consensus 92 ~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~ 170 (287)
T 1gvn_B 92 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTA 170 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCC
Confidence 233332 3345666778899999986543221 22222211 2234566665 4444 6777543 1
Q ss_pred CCC----HHHHHHHHHHHHHHhhccCCCcEEEECCCCC------HHHHHHHHHHHHHHHH
Q 043263 227 TEN----REELLVRIATAREEVQHVKNFDYVVVNAEGK------LDSAVKLVESVIDAEK 276 (286)
Q Consensus 227 ~~t----~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~------i~~~~~~l~~~i~~~~ 276 (286)
+.+ ...+..++..+..+......+|+++++++.. ++....++.+++...+
T Consensus 171 R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~ 230 (287)
T 1gvn_B 171 RATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKEL 230 (287)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHH
Confidence 222 2445677777766665567899998887631 2233334555555544
No 143
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.05 E-value=1.2e-09 Score=86.37 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.++.+|+|+++ .+.+.+|+.+|... + ...+..++....+. +.. +|.++ +++++++++.++|.+.+..
T Consensus 92 ~~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~--~~~-~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 92 SRGTTVFIDIP-FEVFLERCKDSKERPLLKRPLDEIKNLFEERRKI--YSK-ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp TTSEEEEEECC-HHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHH--HTT-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred cCCEEEEEECC-HHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHH--HHh-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 46799999997 78888998764211 1 22344434332221 123 89888 7778999999999888753
No 144
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.04 E-value=1.8e-11 Score=120.35 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred CcEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 183 YDIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
...+++|++||+.+|++++.+| +-+++||.|+ ...+.+.|.+. .+.|...|+|+++. +..||
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~-------i~~AD 875 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV-------IKNAD 875 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCS
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HHhCC
Confidence 3568899999999999998665 3455555544 45555554432 24488888999987 46799
Q ss_pred EEEEC------CCCCH
Q 043263 252 YVVVN------AEGKL 261 (286)
Q Consensus 252 ~viv~------~~G~i 261 (286)
+|+++ ++|++
T Consensus 876 rIivLgp~gg~~~G~I 891 (916)
T 3pih_A 876 HIIDLGPEGGKEGGYI 891 (916)
T ss_dssp EEEEEESSSGGGCCEE
T ss_pred EEEEecCCCCCCCCEE
Confidence 99999 66654
No 145
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.04 E-value=4e-09 Score=87.28 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|..|+|+|++||||||+++.|+..+....++....-+. ...+.-.| ..+...+..+... .. .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g--------~~i~~~~~~g~~~-----~~---~ 67 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG--------LEAKSIIESGNFV-----GD---E 67 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC--------HHHHHHHHHTCCC-----CH---H
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH--------HHHHHHHHCCCcC-----CH---H
Confidence 377899999999999999999998764222211100000 00000000 0111111111100 00 0
Q ss_pred ccHHHHHHHHhc---CCcEEEEeCH------HHHH-HHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------------
Q 043263 170 IPKKQIREYMAK---GYDIVLRVDI------QGAR-TLRRILGDSAVFVFLAAESEMALVERLVERKT------------ 227 (286)
Q Consensus 170 ~~~~~i~~~~~~---g~~~v~~~~~------q~v~-iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------------ 227 (286)
...+.+...+.. +..+++++-. ..+. ++...-..|+.+|+|+.+ .+.+.+|+..|..
T Consensus 68 ~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~ 146 (217)
T 3be4_A 68 IVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRCTHPASGRIYHVKY 146 (217)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred HHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCccccCcccccc
Confidence 111223333332 6677887532 1111 111222357799999997 7888899987631
Q ss_pred ---------------------CCHHHHHHHHHHHHHHhhc----cC-CCcEEEECCCCCHHHHHHHHHHH
Q 043263 228 ---------------------ENREELLVRIATAREEVQH----VK-NFDYVVVNAEGKLDSAVKLVESV 271 (286)
Q Consensus 228 ---------------------~t~~~i~~rl~~~~~~~~~----~~-~~d~viv~~~G~i~~~~~~l~~~ 271 (286)
...+.+.+++......... .. ....+.++.+++++++.++|.+.
T Consensus 147 ~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 147 NPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred CCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 1356677777755443221 12 23345567777899999988765
No 146
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.03 E-value=7.6e-09 Score=86.72 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=54.8
Q ss_pred HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH----HHhc-CCCHHHHHHHHHH-HHHHhhc----cC
Q 043263 179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERL----VERK-TENREELLVRIAT-AREEVQH----VK 248 (286)
Q Consensus 179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl----~~r~-~~t~~~i~~rl~~-~~~~~~~----~~ 248 (286)
+..+..+++++.... ..++...+++|||+++ .+.+.+|+ .+|+ ..+.+.+..++.. +..+..+ ..
T Consensus 132 ~~~~~~~v~~g~~~~----~~~l~~~d~vi~L~a~-~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~ 206 (236)
T 1q3t_A 132 IAQQGGIVMDGRDIG----TVVLPQAELKIFLVAS-VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLK 206 (236)
T ss_dssp HHTTSCEEEECSSCS----SSSGGGCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCS
T ss_pred hcccCCEEEECCcch----hhhccCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccc
Confidence 345556777654210 0123355789999997 66666776 4555 3366666666654 3333321 22
Q ss_pred -CCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263 249 -NFDYVVVNAEG-KLDSAVKLVESVIDA 274 (286)
Q Consensus 249 -~~d~viv~~~G-~i~~~~~~l~~~i~~ 274 (286)
.+|.+++++++ +++++.++|.++++.
T Consensus 207 ~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 207 QAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp CCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34535556655 899999999988764
No 147
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.03 E-value=1e-09 Score=91.39 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK 173 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (286)
+|+|+|++||||||+++.|+..++...+.....-|.+..+ |..+ ...++..+..+.+... ....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~---~~~~----g~~i~~~~~~g~~~~~--------~~~~~ 66 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG---GTEL----GKKAKEFIDRGDLVPD--------DITIP 66 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT---TCHH----HHHHHHHHTTTCCCCH--------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc---CCHH----HHHHHHHHHcCCcCcH--------HHHHH
Confidence 6899999999999999999987642222211111211100 0000 1112222222211110 11123
Q ss_pred HHHHHHhc--CCcEEEEeCHHH---HHHHHHH----hCCCcEEEEEecCCHHHHHHHHHHhcCC----------------
Q 043263 174 QIREYMAK--GYDIVLRVDIQG---ARTLRRI----LGDSAVFVFLAAESEMALVERLVERKTE---------------- 228 (286)
Q Consensus 174 ~i~~~~~~--g~~~v~~~~~q~---v~iaral----~~~~~~~Illd~~~~~~l~~rl~~r~~~---------------- 228 (286)
.+...+.. +..+++++-... +..+..+ -..|+.+|+|+.+ .+.+.+|+..|+..
T Consensus 67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~ 145 (223)
T 2xb4_A 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRRICKNNPNHPNNIFIDAIK 145 (223)
T ss_dssp HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBCEESSCTTSCCBTTCGGGC
T ss_pred HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcccCCccccCCccccccCCCc
Confidence 34555555 788888863211 2222221 1257789999997 77888999877420
Q ss_pred -------------------CHH-HHHHHHHHHHHHh----h----ccCC-----CcEEEECCCCCHHHHHHHHHHHH
Q 043263 229 -------------------NRE-ELLVRIATAREEV----Q----HVKN-----FDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 229 -------------------t~~-~i~~rl~~~~~~~----~----~~~~-----~d~viv~~~G~i~~~~~~l~~~i 272 (286)
+.+ .+.+|+....... + +... ...+.++.+++++++.++|.+.+
T Consensus 146 ~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 146 PNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 135 6777775543221 1 1121 23456677789999999998765
No 148
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.03 E-value=1.5e-11 Score=119.98 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=50.5
Q ss_pred CcEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 183 YDIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
...+++|++||+.+|++++.+| +-+++||.|+ ...+.+.|.+. .+.+...++|+++. +..||
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~-------i~~aD 800 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV-------VAASD 800 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCS
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-------HHhCC
Confidence 3467789999999999999763 4555555554 44555544432 24477888998877 46799
Q ss_pred EEEEC------CCCCH
Q 043263 252 YVVVN------AEGKL 261 (286)
Q Consensus 252 ~viv~------~~G~i 261 (286)
+|+++ ++|++
T Consensus 801 rii~L~p~~g~~~G~I 816 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRL 816 (842)
T ss_dssp EEEEECSSSGGGCCSE
T ss_pred EEEEECCCCCCCCCEE
Confidence 99999 46765
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.02 E-value=2.3e-09 Score=88.12 Aligned_cols=51 Identities=20% Similarity=0.029 Sum_probs=36.1
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhc---CCCHHHHHHHHHH-HHH----HhhccCCCcEEE
Q 043263 203 DSAVFVFLAAESEMALVERLVERK---TENREELLVRIAT-ARE----EVQHVKNFDYVV 254 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~---~~t~~~i~~rl~~-~~~----~~~~~~~~d~vi 254 (286)
..+..|++|++ .+...+|+.+|. +.+.+.+.+++.. +.. ..+....||.||
T Consensus 147 ~~d~~i~vd~~-~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi 205 (208)
T 3c8u_A 147 IWDVSIRLEVP-MADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTW 205 (208)
T ss_dssp TCSEEEEECCC-HHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEE
T ss_pred hcCEEEEEeCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEe
Confidence 34788999998 556556666552 4588999888874 555 345567899887
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.01 E-value=9.3e-09 Score=82.80 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
|.+|+|+|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998653
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.01 E-value=1.9e-09 Score=85.41 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=40.9
Q ss_pred hCCCcEEEEEecCCHHHHHHHHHHhc-----CCC-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 201 LGDSAVFVFLAAESEMALVERLVERK-----TEN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 201 ~~~~~~~Illd~~~~~~l~~rl~~r~-----~~t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
+..+..+|+|+++ .+.+.+|+.+|. ..+ ...+...+....+. +...+|.+|.++ ++++++.++|.+.+
T Consensus 94 l~~~~~vi~l~~~-~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~--~~~~a~~~Id~~-~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 94 LKGLGTTFYLKMD-FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQAL--YEKNASFIIDAR-GGLNNSLKQVLQFI 167 (168)
T ss_dssp GTTSEEEEEEECC-HHHHHHHHCC--------CCTTHHHHHHHHHHHHH--HHHTCSEEEEGG-GCHHHHHHHHHHC-
T ss_pred HhcCCEEEEEECC-HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHH--HHHHCCEEEECC-CCHHHHHHHHHHHh
Confidence 3456789999997 788889987651 112 23343333332211 124578887655 58999999887654
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.01 E-value=7.8e-09 Score=82.79 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH----HHHHhhccchhhhheeccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE----FLQMVDKNELLEYALVYGD 166 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~ 166 (286)
+|.+|+|+|++||||||+++.|+..+.. .+. .+.+. ++..+..+. ........
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~--------------------~~i-~d~~~~g~~i~~~~~~g~--~~~~~~~~ 60 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG--------------------SFV-FEPEEMGQALRKLTPGFS--GDPQEHPM 60 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT--------------------CEE-CCTHHHHHHHHHTSTTCC--SCGGGSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC--------------------CEE-EchhhhHHHHHHhCcccc--chhhhhHH
Confidence 4789999999999999999999977541 111 01111 222111000 00000000
Q ss_pred ccCccHHHHHHHHhc-CCcEEEEeCH----HH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHH
Q 043263 167 YKGIPKKQIREYMAK-GYDIVLRVDI----QG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELLVR 236 (286)
Q Consensus 167 ~~~~~~~~i~~~~~~-g~~~v~~~~~----q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~r 236 (286)
......+.+...+.. |..++++... .+ ...++. .......|+|+++ .+.+.+|+.+|.. .....+...
T Consensus 61 ~~~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~~~ 138 (183)
T 2vli_A 61 WIPLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKD-RGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVEDR 138 (183)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH-TTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh-cCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHHHH
Confidence 000112334445554 6667777532 11 122222 1223455889986 8888899987753 233333222
Q ss_pred HHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 237 IATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 237 l~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
+.. .+....++ +|-+++++++++.++|.+.+...
T Consensus 139 ~~~----~~~~~~~~-~Id~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 139 LNE----LRGEQFQT-HIDTAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp HHH----HTSGGGCS-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred HHh----hcccccce-EeeCCCCCHHHHHHHHHHHHHHh
Confidence 221 11112345 55444478999999998888643
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.00 E-value=6.2e-10 Score=89.24 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|++|+|+|++||||||++++|++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999876
No 154
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.00 E-value=4.1e-12 Score=112.15 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=34.5
Q ss_pred hHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 70 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 70 ~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+++++| |...+.++++.+.+ |++++|+|||||||||++++|+++++
T Consensus 151 ~~~v~f-y~~~l~~l~~~i~~-g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 151 YNLLDN-KEQAISAIKDGIAI-GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TTTSTT-HHHHHHHHHHHHHH-TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred cCchhh-HHHHHhhhhhhccC-CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 444444 41134455555555 99999999999999999999999986
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.00 E-value=4.7e-09 Score=84.09 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhh-eecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYA-LVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 170 (286)
+.+|+|+|++||||||+++.|+..++ .. +++.+.+.... ..+.... ..+...+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~--------------------~~--~~~~d~~~~~~--~~~~~~~~~~~~~~~~~ 66 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG--------------------LK--YINVGDLAREE--QLYDGYDEEYDCPILDE 66 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC--------------------CE--EEEHHHHHHHH--TCEEEEETTTTEEEECH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC--------------------Ce--EEEHHHHHhhc--chhhhhhhhhcCccCCh
Confidence 67899999999999999999997653 11 12222211110 0000000 000000000
Q ss_pred --cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHH
Q 043263 171 --PKKQIREYMAKGYDIVLRVDIQGARTLRRILGD--SAVFVFLAAESEMALVERLVERKTENREELLV-----RIATAR 241 (286)
Q Consensus 171 --~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~--~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~-----rl~~~~ 241 (286)
..+.+...+..|..+ ++... +.++.. +..+|||+++ .+.+.+|+.+|+. +...+.. .+....
T Consensus 67 ~~~~~~~~~~~~~g~~v-v~~~~------~~~~~~~~~~~vi~L~~~-~e~l~~R~~~r~~-~~~~~~~~~~~~~~~~~~ 137 (180)
T 3iij_A 67 DRVVDELDNQMREGGVI-VDYHG------CDFFPERWFHIVFVLRTD-TNVLYERLETRGY-NEKKLTDNIQCEIFQVLY 137 (180)
T ss_dssp HHHHHHHHHHHHHCCEE-EECSC------CTTSCGGGCSEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhcCCEE-EEech------hhhcchhcCCEEEEEECC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH
Confidence 122344455555444 33321 111211 5789999997 8889899998853 3322222 122222
Q ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+......+|.++..++.+++++...+.+++..
T Consensus 138 ~~~~~~y~~~~~i~~~~~~~~ev~~~v~~i~~~ 170 (180)
T 3iij_A 138 EEATASYKEEIVHQLPSNKPEELENNVDQILKW 170 (180)
T ss_dssp HHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 222212236888877777888885555444444
No 156
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.98 E-value=6.5e-11 Score=97.52 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC------C----HHHHHHHHHHHHHHhhccC-CCcEEEECCCCCHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE------N----REELLVRIATAREEVQHVK-NFDYVVVNAEGKLDSAVKLVES 270 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~------t----~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i~~~~~~l~~ 270 (286)
.++.+|+|+.+ .+.+.+|+.+|++. + ...+..++..+..+..... .++.++++++++++++.++|.+
T Consensus 132 ~~d~~i~l~~~-~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 132 KPDWQVLLAVS-AELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BCEEEEEEEEE-HHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred CCCEEEEEeCC-HHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 57788889987 77888999877431 1 1355566655544332111 2465677777889888887743
No 157
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.94 E-value=1.8e-09 Score=91.17 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++++++|+|||||||||++++|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999944
No 158
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.94 E-value=2.4e-09 Score=88.55 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-----hhhhheecc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-----LLEYALVYG 165 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~ 165 (286)
+|.+|++.|++||||||+++.|...+.. . ...++.|..|.-.| +.++..+.... ..+...+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~---~~~~~ep~~~t~~g--------~~ir~~l~~~~~~~~~~~~~llf~a 71 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-N---CKLLKFPERSTRIG--------GLINEYLTDDSFQLSDQAIHLLFSA 71 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-S---EEEEESSCTTSHHH--------HHHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-c---ceEEEecCCCChHH--------HHHHHHHHhcccCCCHHHHHHHHHH
Confidence 5899999999999999999999988753 1 11233342222111 12222222111 111122222
Q ss_pred cccCccHHHHHHHHhcCCcEEEEeCH------HH--------HHHHHH---HhCCCcEEEEE-ecCCHHHHHHHHHHhcC
Q 043263 166 DYKGIPKKQIREYMAKGYDIVLRVDI------QG--------ARTLRR---ILGDSAVFVFL-AAESEMALVERLVERKT 227 (286)
Q Consensus 166 ~~~~~~~~~i~~~~~~g~~~v~~~~~------q~--------v~iara---l~~~~~~~Ill-d~~~~~~l~~rl~~r~~ 227 (286)
+.+. ..+.|..++..|..+++|--. |. +..+.. ....|+++||| |.+.+ ...+|+..+..
T Consensus 72 ~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe-~~~~R~~~~~d 149 (216)
T 3tmk_A 72 NRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVD-NNAEKSGFGDE 149 (216)
T ss_dssp HHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCS-CGGGCCSSSCC
T ss_pred HHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHH-HHHHHhccCcc
Confidence 2222 234677777888877775211 11 112222 12468999999 99854 44466543211
Q ss_pred -CCHHHHHHHHHHHHHHhhcc----CCCcEEEEC-CCCCHHHHHHHHHHHHHHHHhcc
Q 043263 228 -ENREELLVRIATAREEVQHV----KNFDYVVVN-AEGKLDSAVKLVESVIDAEKAKV 279 (286)
Q Consensus 228 -~t~~~i~~rl~~~~~~~~~~----~~~d~viv~-~~G~i~~~~~~l~~~i~~~~~~~ 279 (286)
........++.....+.... .....++++ .+++++++.++|.+.+.......
T Consensus 150 r~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~ 207 (216)
T 3tmk_A 150 RYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTH 207 (216)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 11234445555444332211 234456666 67899999999999999876543
No 159
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.94 E-value=3.1e-10 Score=92.94 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|.+++|+|++||||||++++|++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999998764
No 160
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.94 E-value=3.1e-09 Score=87.67 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK 172 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (286)
.|+|+|++||||||+++.|+..++...++.....|.. ..|...|..+ +..+..+.+... ....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i--------~~~~~~g~~~~~--------~~~~ 65 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQA--------KDIMDAGKLVTD--------ELVI 65 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGG--------HHHHHHTCCCCH--------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHH--------HHHHHCCCcCCH--------HHHH
Confidence 5899999999999999999986642222222111110 0111111111 011111110000 0111
Q ss_pred HHHHHHHhc---CCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc--------------------
Q 043263 173 KQIREYMAK---GYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERK-------------------- 226 (286)
Q Consensus 173 ~~i~~~~~~---g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~-------------------- 226 (286)
+.+...+.. +..+++++-. .....+...-..++.+|+||.+ .+.+.+|+..|.
T Consensus 66 ~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~ 144 (214)
T 1e4v_A 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVP-DELIVDRIVGRRVHAPSGRVYHVKFNPPKVEG 144 (214)
T ss_dssp HHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred HHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHCCcccCCcCCcccccCCCCCccc
Confidence 223333332 2346666532 1112222221256889999997 778889987653
Q ss_pred -------------CCCHHHHHHHHHHHHHHhhc----cCC------CcEEEECCCCCHHHHHHHHHHHH
Q 043263 227 -------------TENREELLVRIATAREEVQH----VKN------FDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 227 -------------~~t~~~i~~rl~~~~~~~~~----~~~------~d~viv~~~G~i~~~~~~l~~~i 272 (286)
..+.+.+.+|+..+...... ... ...+.++.+++++++.++|.+.+
T Consensus 145 ~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 145 KDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 12456778888765543221 111 12455667778999999988765
No 161
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.93 E-value=4.9e-08 Score=80.72 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (286)
+|.+|+|+|++||||||+++.|+..+....+......+.. .. |.++ ...+...+..+..... .
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~----~~~~----g~~i~~~~~~g~~~~~--------~ 66 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAK----GTQL----GLEAKKIMDQGGLVSD--------D 66 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT----TCHH----HHHHHHHHHTTCCCCH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHc----CChH----HHHHHHHHHCCCcCCH--------H
Confidence 4788999999999999999999987642111111000000 00 0000 0011111111110000 0
Q ss_pred ccHHHHHHHHh----cCCcEEEEeC---H-HHHH---HHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-----------
Q 043263 170 IPKKQIREYMA----KGYDIVLRVD---I-QGAR---TLRRILGDSAVFVFLAAESEMALVERLVERKT----------- 227 (286)
Q Consensus 170 ~~~~~i~~~~~----~g~~~v~~~~---~-q~v~---iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----------- 227 (286)
.....+.+.+. .+..+++++- . |... ++...-..++.+|+||.+ .+.+.+|+..|..
T Consensus 67 ~~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~~~~~~g~~y~~~ 145 (220)
T 1aky_A 67 IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRLIHPASGRSYHKI 145 (220)
T ss_dssp HHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETT
T ss_pred HHHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCCccCccCCccccc
Confidence 01122333332 3456777752 1 1111 111122356689999997 7888899876531
Q ss_pred ----------------------CCHHHHHHHHHHHHHHhhc----cCCCc-EEEECCCCCHHHHHHHHHHHHH
Q 043263 228 ----------------------ENREELLVRIATAREEVQH----VKNFD-YVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 228 ----------------------~t~~~i~~rl~~~~~~~~~----~~~~d-~viv~~~G~i~~~~~~l~~~i~ 273 (286)
.+.+.+.+|+......... ....+ .+.++.+++++++.++|.+.+.
T Consensus 146 ~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 146 FNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp TBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2356677777665443221 11123 4555666789999999988764
No 162
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.92 E-value=1.8e-08 Score=82.34 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=53.5
Q ss_pred CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hc-cCCCcEEEECCCC-
Q 043263 183 YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QH-VKNFDYVVVNAEG- 259 (286)
Q Consensus 183 ~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~-~~~~d~viv~~~G- 259 (286)
..+++++.... ..+....+++|||+++ .+.+.+|+.++.+.+.+.+..++....... .. ...+|.+++++++
T Consensus 119 ~~~vi~g~~~~----~~~~~~~d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~ 193 (208)
T 3ake_A 119 PPFVAEGRDMG----TAVFPEAAHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGM 193 (208)
T ss_dssp SCEEEEESSCC----CCCCTTCSEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTS
T ss_pred CCEEEEcccee----EEEecCCcEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCC
Confidence 35666664211 1123456789999997 778888888876556666666555322111 11 2457745556666
Q ss_pred CHHHHHHHHHHHHH
Q 043263 260 KLDSAVKLVESVID 273 (286)
Q Consensus 260 ~i~~~~~~l~~~i~ 273 (286)
+++++.++|.++++
T Consensus 194 ~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 194 TLDEVVAWVLAHIR 207 (208)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999988764
No 163
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=3.2e-10 Score=102.52 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+++|+|+||||||||+++|+|++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 999999999999999999999876
No 164
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.91 E-value=6.9e-09 Score=82.32 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=44.0
Q ss_pred CcEEEEEecCCHHHHHHHHH--Hh-cC---CCHHHHHHHHHHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLV--ER-KT---ENREELLVRIATAREEVQH-VKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~--~r-~~---~t~~~i~~rl~~~~~~~~~-~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
+..+|+|+++ .+.+.+|+. .| .. ........++..+...... ...+|.+|.+++++++++.++|.+.++
T Consensus 94 ~~~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 94 HGTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp HSEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred CCeEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence 4789999987 788889998 66 21 1223334445544433221 122787776555789999999887764
No 165
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.91 E-value=1.4e-08 Score=84.41 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc----hhhhheeccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE----LLEYALVYGD 166 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~ 166 (286)
++.+|+|+|++||||||+++.|+..+....++.. +.++.....+. .+......+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d---------------------~~~~~~~~~~~~~g~~i~~~~~~g~ 64 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG---------------------DLLRDNMLRGTEIGVLAKAFIDQGK 64 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH---------------------HHHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEech---------------------HHHHHhhhcCChHHHHHHHHHHcCC
Confidence 4788999999999999999999976542111111 11111110000 0000000011
Q ss_pred ccCccH----HHHHHHHh--cCCcEEEEeCHHHHHHHHHH--hCCCcEEEEEecCCHHHHHHHHHHhc------------
Q 043263 167 YKGIPK----KQIREYMA--KGYDIVLRVDIQGARTLRRI--LGDSAVFVFLAAESEMALVERLVERK------------ 226 (286)
Q Consensus 167 ~~~~~~----~~i~~~~~--~g~~~v~~~~~q~v~iaral--~~~~~~~Illd~~~~~~l~~rl~~r~------------ 226 (286)
.... ..+.+.+. .+..+++++....+..+..+ +..++.+|+||.+ .+.+.+|+..|.
T Consensus 65 --~~~~~~~~~~~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~y~~~ 141 (227)
T 1zd8_A 65 --LIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVP-FEVIKQRLTARWIHPASGRVYNIE 141 (227)
T ss_dssp --CCCHHHHHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECC-HHHHHHHHTCEEEETTTTEEEETT
T ss_pred --cCCHHHHHHHHHHHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHcCcCCCccCCccccc
Confidence 0111 11223333 25567777632112222222 2467899999997 778888987542
Q ss_pred ---------------------CCCHHHHHHHHHHHHHHhhcc-CCC---c-EEEECCCCCHHHHHHHHHHHHHHH
Q 043263 227 ---------------------TENREELLVRIATAREEVQHV-KNF---D-YVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 227 ---------------------~~t~~~i~~rl~~~~~~~~~~-~~~---d-~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
..+.+.+.+|+.........+ ..+ + .+.++.+ ++++++++|.+++...
T Consensus 142 ~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 142 FNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred cCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 124567777776554332211 111 2 4555555 8999999999988654
No 166
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.91 E-value=1.1e-08 Score=83.18 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=47.1
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHH-hhcc--CCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 202 GDSAVFVFLAAESEMALVERLVERKTENRE-----ELLVRIATAREE-VQHV--KNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~~-----~i~~rl~~~~~~-~~~~--~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
..+..+|+|+++ .+.+.+|+.+|+. ..+ ....++..+..+ .+.. ..++.+| +.+++++++.++|.+.+.
T Consensus 123 ~~~d~vi~L~~~-~e~~~~Rl~~R~r-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~I-d~~~~~~~v~~~I~~~l~ 199 (205)
T 2jaq_A 123 LSFDIVIYLRVS-TKTAISRIKKRGR-SEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVV-DAELDVKTQIELIMNKLN 199 (205)
T ss_dssp CCCSEEEEEECC-HHHHHHHHHHHTC-HHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEE-ETTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC-HHHHHHHHHHcCC-hhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEE-ECCCCHHHHHHHHHHHHH
Confidence 357789999997 7888899987753 222 334555555443 2222 3355554 566799999999998886
Q ss_pred HH
Q 043263 274 AE 275 (286)
Q Consensus 274 ~~ 275 (286)
..
T Consensus 200 ~~ 201 (205)
T 2jaq_A 200 SI 201 (205)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.90 E-value=1.1e-08 Score=87.01 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
++.+|+|+|++||||||+++.|+..+.. .|..+..++.+.++..+.. +... ........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~-----------------~g~~~i~~~~D~~~~~l~~--~~~~--~e~~~~~~ 61 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK-----------------NNIDVIVLGSDLIRESFPV--WKEK--YEEFIKKS 61 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEECTHHHHTTSSS--CCGG--GHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh-----------------CCCEEEEECchHHHHHHhh--hhHH--HHHHHHHH
Confidence 4789999999999999999999976320 0222211233333322111 1000 00000111
Q ss_pred cHHHHHHHHhcCCcEEEEeC---HHHHHHHHH---HhCCCcEEEEEecCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVD---IQGARTLRR---ILGDSAVFVFLAAESEMALVERLVERKTE-NREELLVRIATAREE 243 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iara---l~~~~~~~Illd~~~~~~l~~rl~~r~~~-t~~~i~~rl~~~~~~ 243 (286)
....+...+.. ..+++++. ......+.. ....+..+|+|+++ .+.+.+|+.+|+.. +.+.+.. +.....+
T Consensus 62 ~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~-~~~~~e~ 138 (260)
T 3a4m_A 62 TYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKK-MYEKFDE 138 (260)
T ss_dssp HHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHH-HHHHCCC
T ss_pred HHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHH-HHHHhcC
Confidence 12334455555 56666642 111111111 13356788999986 88888999887632 3333332 2211111
Q ss_pred hh-cc--CCCcEEEECCCC--CHHHHHHHHHHHHHH
Q 043263 244 VQ-HV--KNFDYVVVNAEG--KLDSAVKLVESVIDA 274 (286)
Q Consensus 244 ~~-~~--~~~d~viv~~~G--~i~~~~~~l~~~i~~ 274 (286)
.. .. ..++.+| +.++ +++++.++|.+.+..
T Consensus 139 ~~~~~~~~~~~~~I-d~~~~~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 139 PGKKYKWDEPFLII-DTTKDIDFNEIAKKLIEKSKE 173 (260)
T ss_dssp TTSSCGGGCCSEEE-ETTSCCCHHHHHHHHHHHHTS
T ss_pred ccccCCCCCCEEEE-eCCCCCCHHHHHHHHHhcccC
Confidence 00 00 2345554 5444 688888888776653
No 168
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.90 E-value=4.7e-09 Score=87.27 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
.+.+||+|++||||||+++.|+..+...+++....-|.. ..| .++ ...+...+..+.++.. .+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~----t~l----G~~i~~~~~~G~lvpd--------ei 71 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG----TPL----GVEAKTYMDEGKLVPD--------SL 71 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT----CHH----HHHHHHHHTTTCCCCH--------HH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC----ChH----HHHHHHHHhhcccccc--------HH
Confidence 467999999999999999999987642222211110000 000 000 0011111111111111 01
Q ss_pred cHHHHHHHHhc---CCcEEEEeCHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc------------------
Q 043263 171 PKKQIREYMAK---GYDIVLRVDIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERK------------------ 226 (286)
Q Consensus 171 ~~~~i~~~~~~---g~~~v~~~~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~------------------ 226 (286)
..+.+.+.+.+ ....+++|-+..+..|.++ ...++.+|+||.+ .+.+.+|+..|.
T Consensus 72 ~~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~ 150 (230)
T 3gmt_A 72 IIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHVKFNPPKV 150 (230)
T ss_dssp HHHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEETTTBCCSS
T ss_pred HHHHHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCcccccCCCCCc
Confidence 12233333432 3467888754333333332 2357899999997 888889998763
Q ss_pred ---------------CCCHHHHHHHHHHHHHHhhcc----CC------------CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 227 ---------------TENREELLVRIATAREEVQHV----KN------------FDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 227 ---------------~~t~~~i~~rl~~~~~~~~~~----~~------------~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
..+.+.|.+|+..+.....++ .. .-.+.|+.++++++++++|.+++.+
T Consensus 151 ~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 151 EGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred cCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 126788999998776543221 11 2345567778999999999887754
No 169
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.90 E-value=4.8e-08 Score=80.57 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=55.0
Q ss_pred HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH----HhcC-CCHHHHHHHHHHHH-HHh-----hcc
Q 043263 179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLV----ERKT-ENREELLVRIATAR-EEV-----QHV 247 (286)
Q Consensus 179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~----~r~~-~t~~~i~~rl~~~~-~~~-----~~~ 247 (286)
+..+..+++++.. +...++...+++|||+++ .+.+.+|+. .|+. .+.+.+..++.... .+. ...
T Consensus 115 ~~~~~~~vi~g~~----~~~~~~~~~~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~ 189 (219)
T 2h92_A 115 LAAEKGIVMDGRD----IGTVVLPDADLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLR 189 (219)
T ss_dssp HHTTCCEEEEESS----CCCCCCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC
T ss_pred hccCCcEEEEcCC----ccceecCCCCEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccc
Confidence 3455567777631 111244566889999997 777777764 3332 26677777776543 222 222
Q ss_pred CCCcEEEECCCC-CHHHHHHHHHHHHH
Q 043263 248 KNFDYVVVNAEG-KLDSAVKLVESVID 273 (286)
Q Consensus 248 ~~~d~viv~~~G-~i~~~~~~l~~~i~ 273 (286)
..+|.+++++++ +++++.++|.+.++
T Consensus 190 ~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 190 KADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp CCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 346744445554 99999999988875
No 170
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.90 E-value=7.9e-11 Score=115.87 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=47.0
Q ss_pred cEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 184 DIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
..+++|++||+.+|++++.+| +-+++||.|+ ...+.+.|.+. .+.+...++|+++. +..||+
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-------i~~aDr 934 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV-------IKTSDW 934 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCSE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-------HHhCCE
Confidence 467789999999999999765 4555555544 44555555432 24477788998876 367999
Q ss_pred EEEC
Q 043263 253 VVVN 256 (286)
Q Consensus 253 viv~ 256 (286)
|+++
T Consensus 935 IivL 938 (993)
T 2ygr_A 935 IIDL 938 (993)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 171
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.89 E-value=1.6e-08 Score=80.65 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc--c----hhhhheecc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN--E----LLEYALVYG 165 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~--~----~~~~~~~~~ 165 (286)
.+|+|+|++||||||+++.|+. .+. +..++.+.++..+... . +.... ..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~--~~ 58 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKK--EG 58 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCGGGCCCCHHH--HH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC----------------------cEEecHHHHHHHhhCCCccchhhhchhh--hh
Confidence 6799999999999999999997 332 1223333343332111 0 00000 00
Q ss_pred cccCccHHHHHHHH---hcCCcEEEEeCH----HHHHHHH--HHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHH
Q 043263 166 DYKGIPKKQIREYM---AKGYDIVLRVDI----QGARTLR--RILGDSAVFVFLAAESEMALVERLVERKT--ENREELL 234 (286)
Q Consensus 166 ~~~~~~~~~i~~~~---~~g~~~v~~~~~----q~v~iar--al~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~ 234 (286)
..+....+.+...+ ..|..+++++.. ++-.+.. ...+.+..+|+|+++ .+.+.+|+.+|+. .+.+.+.
T Consensus 59 ~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~i~ 137 (181)
T 1ly1_A 59 IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLR 137 (181)
T ss_dssp HHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccccCCCCHHHHH
Confidence 01111223455566 677888887532 1111111 112234478889975 8888899988763 3666676
Q ss_pred HHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 235 VRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 235 ~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.++........ .+.++++.+. .+++..++...+..
T Consensus 138 ~~~~~~~~~~~----~~~~~id~~~-~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 138 SMYKSMREYLG----LPVYNGTPGK-PKAVIFDVDGTLAK 172 (181)
T ss_dssp HHHHHHHHHHT----CCCC---------------------
T ss_pred HHHHHhhccCC----CCccccCCCC-Cceeeehhhhhhhc
Confidence 66666544321 2322344432 25555556555543
No 172
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.89 E-value=1.9e-08 Score=82.09 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch---hhhheecccccCc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL---LEYALVYGDYKGI 170 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~ 170 (286)
+|+|-|+-||||||.+++|+..+..-+..+. .+|.|. |. . ..+.++..+..... .+...+.... ..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~-~treP~-~t----~----~~~~ir~~l~~~~~~~~~~~ll~~a~r-~~ 70 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI-LKREPG-GT----E----TGEKIRKILLEEEVTPKAELFLFLASR-NL 70 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE-EEESSC-SS----H----HHHHHHHHHHHSCCCHHHHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEECCC-CC----c----HHHHHHHHhhcccCChHHHHHHHHHHH-HH
Confidence 6899999999999999999987643222222 223342 11 1 11222222211111 0101111111 11
Q ss_pred cHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263 171 PKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTENREE 232 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~ 232 (286)
..+.+..++..|..++++- ....+..+... ...|+++++||.+ .+...+|..+++......
T Consensus 71 ~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~e 149 (197)
T 3hjn_A 71 LVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKRE 149 (197)
T ss_dssp HHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCHH
T ss_pred HHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccHH
Confidence 2244667788888877762 11222222111 1368999999998 555667765554433334
Q ss_pred HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
...++.....+.........++++.+++++++.++|.+.+++
T Consensus 150 f~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 445554443333211223356667778999999999888754
No 173
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.89 E-value=8.3e-11 Score=115.36 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=46.9
Q ss_pred cEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 184 DIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
..+++|++||+.+|++++.+| +-+++||.|+ ...+.+.|.+. .+.+...++|+++. +..||+
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-------i~~aDr 916 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-------IKTADY 916 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCSE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-------HHhCCE
Confidence 457789999999999999765 3555555544 44555555432 24477788998876 357999
Q ss_pred EEEC
Q 043263 253 VVVN 256 (286)
Q Consensus 253 viv~ 256 (286)
|+++
T Consensus 917 IivL 920 (972)
T 2r6f_A 917 IIDL 920 (972)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 174
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.88 E-value=1.2e-08 Score=82.06 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|.+|+|+|++||||||+++.|++.+.. .|..+.+++.+.++..+... .+.... ... .+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~-----------------~~~~~~~~~~d~~~~~~~~~~~~~~~~-r~~-~~~ 72 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK-----------------EGYRVEVLDGDWARTTVSEGAGFTREE-RLR-HLK 72 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEEEHHHHHTTTTTTCCCCHHH-HHH-HHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----------------cCCeEEEeeHHHHHHHHhhccCCChhh-HHH-HHH
Confidence 3899999999999999999999987641 12223333333333221100 000000 000 000
Q ss_pred ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHhc-----CCCHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRIL---GDSAVFVFLAAESEMALVERLVERK-----TENREELLVRIA 238 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r~-----~~t~~~i~~rl~ 238 (286)
.........+..|..++.++. ......++.++ ..|..+|+||++ .+.+.+|+.... ......+ .
T Consensus 73 ~~~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~~~~~~~~~~~~----~ 147 (186)
T 2yvu_A 73 RIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLYKKALKGELENF----T 147 (186)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHHHHHHTTCCSSC----H
T ss_pred HHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhhhHHhhcchhhh----h
Confidence 000011122345656666642 11112223332 236788999997 777777764310 0000000 0
Q ss_pred HHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 239 TAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 239 ~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
......+....++.+|..++.+++++.++|.+.++.
T Consensus 148 ~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 148 GITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp HHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 000000101246666544446899999999988865
No 175
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.87 E-value=1.7e-08 Score=81.35 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
|++++|+|||||||||++++|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6799999999999999999998743
No 176
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.87 E-value=3.7e-09 Score=92.02 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|||||||||++++|++++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999999999986
No 177
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.86 E-value=1.4e-10 Score=103.81 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=50.4
Q ss_pred EEEeCHHHHHHHHHHh------CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263 186 VLRVDIQGARTLRRIL------GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFD 251 (286)
Q Consensus 186 v~~~~~q~v~iaral~------~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d 251 (286)
+++|+.|++.+|++++ .+|+++|+ ||+.+...+.+.|.+. .+.+...++|+++. ...||
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-------~~~~d 352 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-------SEAFD 352 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-------HTTCS
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCC
Confidence 4467889999999987 67777766 5555555666655543 23477778998876 36799
Q ss_pred EEEECCCCCH
Q 043263 252 YVVVNAEGKL 261 (286)
Q Consensus 252 ~viv~~~G~i 261 (286)
+|+++++|++
T Consensus 353 ~~~~l~~G~i 362 (365)
T 3qf7_A 353 RKLRITGGVV 362 (365)
T ss_dssp CEEEEETTEE
T ss_pred EEEEEECCEE
Confidence 9999998875
No 178
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.86 E-value=2.5e-07 Score=77.17 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhc---------------------------------CCCHHHHHHHHHHHHHHh----h
Q 043263 203 DSAVFVFLAAESEMALVERLVERK---------------------------------TENREELLVRIATAREEV----Q 245 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~---------------------------------~~t~~~i~~rl~~~~~~~----~ 245 (286)
.++.+|+|+.+ .+.+.+|+..|. ..+.+.+.+|+....... +
T Consensus 122 ~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~ 200 (233)
T 1ak2_A 122 KLDSVIEFSIP-DSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200 (233)
T ss_dssp CCCEEEEEECC-HHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECC-HHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999997 788889987662 123566777776544321 1
Q ss_pred ccC-CCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 246 HVK-NFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 246 ~~~-~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
... ....+.++.+++++++.++|.+.++..
T Consensus 201 ~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 201 YYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp HHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 111 122455677789999999999988754
No 179
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.83 E-value=9e-09 Score=82.65 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=41.4
Q ss_pred CcEEEEEecCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH--hhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 204 SAVFVFLAAESEMALVERLVERKTE---NREELLVRIATAREE--VQHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 204 ~~~~Illd~~~~~~l~~rl~~r~~~---t~~~i~~rl~~~~~~--~~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
...+|+|+++ .+.+.+|+.+|... .......++..+... ..+...+|.+|.+++++++++.++|.+.++
T Consensus 94 ~~~vV~L~~~-~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 94 GHTVVYLEIS-AAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp TSCEEEEECC-HHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred CCeEEEEeCC-HHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4588999986 88888999876421 111112223333221 111245787775554789999999887764
No 180
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.82 E-value=4.2e-09 Score=85.02 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|++++|+|||||||||++++|++.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 49999999999999999999999874
No 181
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.82 E-value=6.5e-09 Score=90.44 Aligned_cols=49 Identities=27% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHhHhHHHHhccc--ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 68 ELLRSLEASLGHA--FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 68 i~~~~v~~~~~~~--l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.+...++.. +..+++.+.+ |++++|+|||||||||++++|++++.
T Consensus 75 ~~~~~l~~~l~~~~~~~~l~~~~~~-g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 75 ALKESVLEMLAKKNSKTELQLGFRK-PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHCC--CCCSCCCCSSS-CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccccccccCC-CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4555666666642 2456676776 99999999999999999999999975
No 182
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.78 E-value=3.5e-07 Score=74.74 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=45.6
Q ss_pred cEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hc-----------cCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 205 AVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QH-----------VKNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 205 ~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~-----------~~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.+.|||+++ .+.+.+|+.++.+.+...+..++....... .+ ...+|.+|-.++-+++++++.|.+.+
T Consensus 118 ~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i 196 (201)
T 3fdi_A 118 MISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI 196 (201)
T ss_dssp EEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred eEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence 688999997 778888887765556666655544322211 10 12367777555558999999998887
Q ss_pred HH
Q 043263 273 DA 274 (286)
Q Consensus 273 ~~ 274 (286)
+.
T Consensus 197 ~~ 198 (201)
T 3fdi_A 197 DS 198 (201)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 183
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.74 E-value=2.2e-08 Score=88.97 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+++.+.+ |++++|+|||||||||+++.|++++.
T Consensus 148 ~~l~l~~~~-g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 148 TELQLGFRK-PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSCCCCSSS-SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcceecCC-CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 355666666 99999999999999999999999875
No 184
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.74 E-value=1.3e-08 Score=89.20 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHHHH-HHHhhccchhhh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKEEF-LQMVDKNELLEY 160 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~-~~~i~~~~~~~~ 160 (286)
++.+|+|+||+|||||||+..|+..++. ++.....+|++|+.++..|.++++++..++ ...+....|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~- 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS- 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH-
Confidence 3679999999999999999999988752 223345567888888888888776543221 11111111111
Q ss_pred heecccccCccHHHHHHHHhcCCcEEE-EeCHHHHHHHHH---------------------HhCCCcEEEEEecCCHHHH
Q 043263 161 ALVYGDYKGIPKKQIREYMAKGYDIVL-RVDIQGARTLRR---------------------ILGDSAVFVFLAAESEMAL 218 (286)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~-~~~~q~v~iara---------------------l~~~~~~~Illd~~~~~~l 218 (286)
...+.+.+....|...++ ||....+.-+.. ......++|+|+++ .+.+
T Consensus 118 ---------~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~-re~L 187 (339)
T 3a8t_A 118 ---------LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVS-VKVL 187 (339)
T ss_dssp ---------HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECC-HHHH
T ss_pred ---------HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCC-HHHH
Confidence 112334445555654443 444322221111 01123456668875 9999
Q ss_pred HHHHHHhc
Q 043263 219 VERLVERK 226 (286)
Q Consensus 219 ~~rl~~r~ 226 (286)
.+||.+|.
T Consensus 188 ~~RI~~R~ 195 (339)
T 3a8t_A 188 TDYLAKRV 195 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99998873
No 185
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.74 E-value=1e-08 Score=81.72 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhc--CC---C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERK--TE---N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~--~~---t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
....+|||+++ .+.+.+|+.++. .. . ...+...+....+.. ...+|.+|-.++.++++++++|.+.++.
T Consensus 92 ~~~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y--~~~~~~~Idt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 92 KAGFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY--EQKANFILNIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp GGCEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH--HHHCSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred cCCEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHH--HhcCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 45688999986 778888886652 11 1 333333222211111 1236766654446899999999887753
No 186
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.73 E-value=7.3e-07 Score=73.96 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=46.4
Q ss_pred cEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hcc-----------CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263 205 AVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QHV-----------KNFDYVVVNAEGKLDSAVKLVESVI 272 (286)
Q Consensus 205 ~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~~-----------~~~d~viv~~~G~i~~~~~~l~~~i 272 (286)
.+.|||+++ .+.+.+|+.++.+.+...+...+.....+. .+. ..+|.+|-.+.-.++++++.|.+.+
T Consensus 138 ~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i 216 (223)
T 3hdt_A 138 LIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYI 216 (223)
T ss_dssp EEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHH
Confidence 588999997 888889988765556655554444322211 111 3578777655558999999998888
Q ss_pred HH
Q 043263 273 DA 274 (286)
Q Consensus 273 ~~ 274 (286)
+.
T Consensus 217 ~~ 218 (223)
T 3hdt_A 217 RL 218 (223)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.73 E-value=8.9e-09 Score=84.77 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|.+|+|+|++||||||+++.|++.+. +.. |..+..++.+.++..+... .+... .. ...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~------------~~~----g~~~~~~~~d~~r~~l~~~~~~~~~-~r-~~~~~ 85 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV------------RDR----RVHAYRLDGDNIRFGLNKDLGFSEA-DR-NENIR 85 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH------------HHH----CCCEEEECHHHHTTTTTTTCCSSHH-HH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc------------ccc----CCcEEEECChHHhhhhccccCCCHH-HH-HHHHH
Confidence 489999999999999999999998764 111 2222333333332211100 00000 00 00000
Q ss_pred ccHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHh---------CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVDI---QGARTLRRIL---------GDSAVFVFLAAESEMALVERLVERKTENREELLVRI 237 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~---------~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl 237 (286)
...+.+...+..|..++++... .....++.+. ..|..+|+||++ .+.+.+|+. + ... .+.
T Consensus 86 ~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~~-r---~~~---~~~ 157 (211)
T 1m7g_A 86 RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRDP-K---GLY---KKA 157 (211)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSCT-T---CHH---HHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhhh-H---HHH---HHH
Confidence 0011233446677777776421 1122333322 245788999987 777777741 1 110 000
Q ss_pred HHHHH----H----hhccCCCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263 238 ATARE----E----VQHVKNFDYVVVNAEG-KLDSAVKLVESVIDA 274 (286)
Q Consensus 238 ~~~~~----~----~~~~~~~d~viv~~~G-~i~~~~~~l~~~i~~ 274 (286)
..... . .+....++. +++.++ +++++.++|.+.+..
T Consensus 158 r~~~~~~~~~~~~~y~~~~~~~~-~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 158 REGVIKEFTGISAPYEAPANPEV-HVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HHTSSSSCBTTTBCCCCCSSCSE-EEECSSSCHHHHHHHHHHHHHH
T ss_pred HhcchhhhhhhhhhccCCCCCeE-EEECCCCCHHHHHHHHHHHHHH
Confidence 00000 0 001124564 456666 899999999998865
No 188
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.71 E-value=1.9e-08 Score=94.29 Aligned_cols=161 Identities=10% Similarity=0.031 Sum_probs=88.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-hhhhheecccccCc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-LLEYALVYGDYKGI 170 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ 170 (286)
+.+|.|+|++||||||+++.|+..+. ..|..+.+++.+.++..+.... |.. .....++ ..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~-----------------~~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~~l-~~ 432 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ-----------------ARGRKVTLLDGDVVRTHLSRGLGFSK-EDRITNI-LR 432 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-----------------HTTCCEEEECHHHHHHHTCTTCCSSH-HHHHHHH-HH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh-----------------hcCCeEEEECchHhhhhhcccccccH-HHHHHHH-HH
Confidence 68999999999999999999998653 2355566667666655432111 110 0000000 00
Q ss_pred cHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Q 043263 171 PKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTENREELLVRIATAREE--- 243 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~--- 243 (286)
....+...+..|..++++.. ......++.++..++ .+|+|+++ .+.+.+|+.+ +... ......+..+...
T Consensus 433 i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~Rl~r-~~~~-~~~~~~i~~~~~vr~~ 509 (546)
T 2gks_A 433 VGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEERDVK-GLYK-KAKEGLIKGFTGVDDP 509 (546)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHHCCS-SHHH-HC------CCBTTTBC
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHHhhc-cccc-cccHHHHHHHHhhhhc
Confidence 11233445677888888742 112234555554455 78889986 6777788752 1100 0000111111000
Q ss_pred hhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263 244 VQHVKNFDYVVVNAEGKLDSAVKLVESVIDA 274 (286)
Q Consensus 244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~ 274 (286)
.+....+|.+|.+++++++++.++|.+.+..
T Consensus 510 ~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 510 YEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1111357877655557899999999998875
No 189
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.70 E-value=2.7e-07 Score=76.99 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=50.8
Q ss_pred HhcC-CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHH-Hh----hccC
Q 043263 179 MAKG-YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATARE-EV----QHVK 248 (286)
Q Consensus 179 ~~~g-~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~-~~----~~~~ 248 (286)
+... ..++++|-- +...++++.++-|||+++.+....+|..+ ....+.+.+...+..... +. .+++
T Consensus 124 ~a~~~~~~V~~GRd----~gt~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~ 199 (233)
T 3r20_A 124 LATEGGRVVVEGRD----IGTVVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLR 199 (233)
T ss_dssp HHTSSSCEEEEESS----CCCCCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCS
T ss_pred HHHhcCcEEEeccc----ceeEEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence 3444 567776631 11124456789999999854444444332 223366666655544322 11 2234
Q ss_pred CCc-EEEECCCC-CHHHHHHHHHHHHHH
Q 043263 249 NFD-YVVVNAEG-KLDSAVKLVESVIDA 274 (286)
Q Consensus 249 ~~d-~viv~~~G-~i~~~~~~l~~~i~~ 274 (286)
.+| -++++.++ +++++++.|.++++.
T Consensus 200 ~~~dal~IDTs~l~iee~v~~I~~~i~~ 227 (233)
T 3r20_A 200 AADDALVVDTSDMDQAQVIAHLLDLVTA 227 (233)
T ss_dssp CCTTSEEEECTTSCHHHHHHHHHHHC--
T ss_pred cccCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 444 24555544 899999999888764
No 190
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.68 E-value=2.2e-08 Score=84.90 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+++|+||+||||||+++.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5799999999999999999998765
No 191
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.68 E-value=8.8e-08 Score=87.02 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (286)
++.+|.|+|++||||||+++.|+..+.. ..++.+.+. .+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~----------------------~~i~~D~~~-----------------~~~~ 297 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY----------------------VHVNRDTLG-----------------SWQR 297 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC----------------------EECCGGGSC-----------------SHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc----------------------EEEccchHH-----------------HHHH
Confidence 4689999999999999999999876431 111111100 0111
Q ss_pred cHHHHHHHHhcCCcEEEEeC----HHH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHH
Q 043263 171 PKKQIREYMAKGYDIVLRVD----IQG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRI 237 (286)
Q Consensus 171 ~~~~i~~~~~~g~~~v~~~~----~q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl 237 (286)
..+.+...+..|..++++.. .++ ..+++. ...+..+|+++++ .+.+.+|+..|.. .....+..++
T Consensus 298 ~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~-~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~~~~~~~~~~ 375 (416)
T 3zvl_A 298 CVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD-AGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAPVSDMVMFSY 375 (416)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH-HTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH-cCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCCCCHHHHHHH
Confidence 23345566778888888753 122 222332 3345677888875 8899999987743 2223333444
Q ss_pred HHHHHHhhccCCCcEEEECC
Q 043263 238 ATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 238 ~~~~~~~~~~~~~d~viv~~ 257 (286)
....+.......+|.|+..+
T Consensus 376 ~~~~e~P~~~E~fd~v~~v~ 395 (416)
T 3zvl_A 376 RKQFEPPTLAEGFLEILEIP 395 (416)
T ss_dssp HHHCCCCCGGGTCSEEEEEC
T ss_pred HHhcCCCCcccCCcEEEEEe
Confidence 43332222235678777544
No 192
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.67 E-value=3.1e-10 Score=90.51 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcc---eeeeeecccCCCCCCcCCcceeeeC---HHHHHH-Hh-------hccch
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSL---HFVVTATSRPMRPGEVNGKDYFFVS---KEEFLQ-MV-------DKNEL 157 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~---~~~i~~~~r~~~~G~~~g~~~~~~~---~~~~~~-~i-------~~~~~ 157 (286)
.++++|+|+||||||||+++|.+++... .+.+. ++|.++...+ .+.++. .+ .+..+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~----------~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~ 71 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK----------RHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL 71 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE----------C------------CHHHHHHHHTCEEEEECSSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE----------EcCcccccCCccchhHHHHHhcCCceEEECCCcE
Confidence 3689999999999999999999998622 22222 5565544333 233332 11 11111
Q ss_pred hhhheecccccCc--cHHHHHHH-HhcCCcEEEE-----eCHHHHHHHHHHhCCCcE
Q 043263 158 LEYALVYGDYKGI--PKKQIREY-MAKGYDIVLR-----VDIQGARTLRRILGDSAV 206 (286)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~i~~~-~~~g~~~v~~-----~~~q~v~iaral~~~~~~ 206 (286)
.. ...+. ... ...++... ++ +++++++ +++||+.+||+++.+|++
T Consensus 72 ~~--i~~~~-~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 72 AF--IRRVS-EEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EE--EEECC-HHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred EE--EecCC-hhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 10 00000 000 11122222 44 7777764 788999999999877765
No 193
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.64 E-value=1.8e-07 Score=81.03 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc------chhhhheeccc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN------ELLEYALVYGD 166 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~ 166 (286)
.+|.|+|++||||||+++.|+..+. | +..++.+.++..+... .+..... ..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~-------------------~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~--~~ 59 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNP-------------------G--FYNINRDDYRQSIMAHEERDEYKYTKKKE--GI 59 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-------------------T--EEEECHHHHHHHHTTSCCCC---CCHHHH--HH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCC-------------------C--cEEecccHHHHHhccCCcccccccchhhh--hH
Confidence 6799999999999999999997531 1 2223333333322110 0000000 00
Q ss_pred ccCccHHHHHHHH---hcCCcEEEEeCH---HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHH
Q 043263 167 YKGIPKKQIREYM---AKGYDIVLRVDI---QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKT--ENREELLV 235 (286)
Q Consensus 167 ~~~~~~~~i~~~~---~~g~~~v~~~~~---q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~ 235 (286)
......+.+...+ ..|..+++++.. .....++.+ ...+..+|+|+++ .+.+.+|+.+|.. .+.+.+..
T Consensus 60 ~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~e~i~~ 138 (301)
T 1ltq_A 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRS 138 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHH
Confidence 0001122344556 667788887622 111122222 2233477889985 8889999988863 35677777
Q ss_pred HHHHHHHHhhcc------CCCcEEEECCCCCH
Q 043263 236 RIATAREEVQHV------KNFDYVVVNAEGKL 261 (286)
Q Consensus 236 rl~~~~~~~~~~------~~~d~viv~~~G~i 261 (286)
++....+..... .....++++.+|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl 170 (301)
T 1ltq_A 139 MYKSMREYLGLPVYNGTPGKPKAVIFDVDGTL 170 (301)
T ss_dssp HHHHHHHHHTCCCCCCCTTSCEEEEEETBTTT
T ss_pred HHHHHhcccCCcceeccccccceEEEeCCCCc
Confidence 776654432211 11245556666654
No 194
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.60 E-value=5.4e-08 Score=85.12 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.++||+|||||||||++++|.+++.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999999999875
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.59 E-value=6e-09 Score=92.12 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++++++++.|+. .+.++++.+.+ |.+++|+|+|||||||++++|.+++.
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~-g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGR-AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCC-SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHeeCCcccccChHHHHHhCCcccCC-CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4788889999864 67888888887 99999999999999999999998864
No 196
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.59 E-value=1.7e-07 Score=87.84 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|+||||||||+++|++.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 499999999999999999999999875
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.55 E-value=5.1e-09 Score=89.24 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.|.+++ +.+ |++++|+|||||||||++++|+++++
T Consensus 16 vl~~i~--i~~-g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 16 KVLELC--HRK-MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp HHHHGG--GCS-SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHh--hCC-CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 344444 344 99999999999999999999999876
No 198
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.54 E-value=7.4e-09 Score=94.55 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=44.0
Q ss_pred hHHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 66 KIELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 66 ~~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..++++++++.|+ + +++++ +.+.+ |++++|+||||||||||+++|+++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~-Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGR-GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBT-TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CceEEeccceecCCCceEEeee-EEecC-CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3578889999997 3 68888 88887 99999999999999999999999986
No 199
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.52 E-value=3.5e-08 Score=90.75 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.++++.+++ ++++|+||||||||||+++|+|++.
T Consensus 19 ~l~~vsl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 19 GFFARTFDFDE--LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp TEEEEEEECCS--SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccceEEEEcc--ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 57777777775 9999999999999999999999986
No 200
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.51 E-value=3.3e-09 Score=93.23 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=41.6
Q ss_pred EEeCHHHHHHHHHHh----CCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEE--
Q 043263 187 LRVDIQGARTLRRIL----GDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYV-- 253 (286)
Q Consensus 187 ~~~~~q~v~iaral~----~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~v-- 253 (286)
++|++|++.+|+++. ..|+++|+ ||+.....+.+.+.+.. +.+...++|+... ...||++
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-------~~~~d~~~~ 293 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-------MEAADLLHG 293 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-------GGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-------HhhCceEEE
Confidence 456789999999985 45666666 55554556655555532 2345566787543 4568865
Q ss_pred EECCCC
Q 043263 254 VVNAEG 259 (286)
Q Consensus 254 iv~~~G 259 (286)
+++.+|
T Consensus 294 v~~~~g 299 (322)
T 1e69_A 294 VTMVNG 299 (322)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 556666
No 201
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.50 E-value=8.4e-09 Score=91.43 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++++++++.|+ + +++++ +.+.+ |++++|+||||||||||+++|+++..
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~-Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGI-GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEET-TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CeeecccceecCCCCEEEEee-eeecC-CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466777788776 3 56677 77776 99999999999999999999999976
No 202
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.48 E-value=5.8e-07 Score=85.07 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG 169 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 169 (286)
+|.+|.|+|.+||||||+++.|+..+. -.|..+..++.+.++..+..+ .|... ....+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~-----------------~~G~~~v~lDgD~iR~~L~~~~~fs~~-dree~~r~ 112 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV-----------------CHGIPCYTLDGDNIRQGLNKNLGFSPE-DREENVRR 112 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-----------------HTTCCEEEESHHHHTTTTTTTCCSSHH-HHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-----------------hcCCeEEEechHHhhhccCccccCChh-hhHHHHHH
Confidence 478999999999999999999998752 012222223333222211100 00000 00000000
Q ss_pred ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHh----cCCCHHHHHHHHHH
Q 043263 170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRIL---GDSAVFVFLAAESEMALVERLVER----KTENREELLVRIAT 239 (286)
Q Consensus 170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r----~~~t~~~i~~rl~~ 239 (286)
+ .+.+...+..|..++.+.- ......++.++ ..+.++|+||++ .+.+.+|+.+. ........ +..
T Consensus 113 i-~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~~aR~~~~~~---~~~ 187 (630)
T 1x6v_B 113 I-AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYKKARAGEIKG---FTG 187 (630)
T ss_dssp H-HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHHHHTTC-------CBT
T ss_pred H-HHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccchhhhhhhHHH---HHH
Confidence 1 1122333556666665521 11123344443 235678999997 77888886521 11111000 000
Q ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263 240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE 275 (286)
Q Consensus 240 ~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~ 275 (286)
.....+....+|.+|-.++.++++++++|.+.+...
T Consensus 188 ~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 188 IDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp TTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred hhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 000001113567655444458999999999998764
No 203
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.45 E-value=3.2e-08 Score=80.83 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=32.2
Q ss_pred HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
.++++|++|.|+. .+.+ +.+.+ |..++|+|++|||||||++.|++..
T Consensus 3 ~l~~~~~~~~~~~~~l~~--~~~~~-~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSAPDIRH--LPSDT-GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEEESSGGG--SSCSC-SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheeecCCHhH--CCCCC-CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999975 4555 56665 9999999999999999999998764
No 204
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.44 E-value=5.9e-07 Score=75.95 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.++.|+|++||||||+++.|++.++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 378999999999999999999998764
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.43 E-value=1.8e-07 Score=85.84 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=32.4
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
...++++.+.+ |.+++|+|+|||||||++++|++++.
T Consensus 282 ~~~~Isl~i~~-GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 282 VDEPLNVEGKA-PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TBCCCCCCSCT-TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCceeeccC-CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 34567777776 99999999999999999999999875
No 206
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.40 E-value=7.1e-08 Score=83.56 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=43.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKE 146 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~ 146 (286)
+.+++|+||+|||||||+..|+..++. ++..+..+|++|+.++..|.++++++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~ 66 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIK 66 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCB
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccC
Confidence 678999999999999999999987652 2334556778888888888888876543
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.38 E-value=4.5e-07 Score=79.65 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|||||||||++++|++++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999999999876
No 208
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.36 E-value=1.7e-07 Score=83.92 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
..+|+|+||+|||||||+..|+..++. ++-.+..+|++|..++..|.++++++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~ 64 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 64 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCc
Confidence 468999999999999999999977653 222345678889888888998887653
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=4.4e-08 Score=88.66 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCCCCCCCCCeE--EEEEcCCCCCHHHHHHHHHhcc
Q 043263 83 SNPVCPPPNPLI--IVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 83 ~~~~~~~~~g~i--i~l~G~sGsGKSTl~~~L~~~~ 116 (286)
++++.+. +|.+ ++|+|+||||||||+++|+|+.
T Consensus 32 ~vsl~i~-~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 32 LVNKSVS-QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHSCC--CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCceEec-CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3334444 4999 9999999999999999999973
No 210
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.33 E-value=3.1e-08 Score=92.74 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 87 CPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+++ |++++|+|+||||||||++.+++...
T Consensus 277 ~i~~-G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFK-DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEES-SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCC-CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4555 99999999999999999999998764
No 211
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.32 E-value=3.7e-07 Score=76.58 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTENREELL----VRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESVID 273 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~----~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~i~ 273 (286)
..+.+|++|++.+ ..++|+++|+. +.+.+. .++..+..+. .+...||.||.|+ |+++++..++.++++
T Consensus 167 ~~d~VvVvdv~~~-~qieRl~~rg~-~~v~i~~~~~~~i~~Q~se~~~k~~~AD~VI~N~-gsle~l~~qV~~ll~ 239 (241)
T 1dek_A 167 GYDYYIVPDTRQD-HEMDAARAMGA-TVIHVVRPGQKSNDTHITEAGLPIRDGDLVITND-GSLEELFSKIKNTLK 239 (241)
T ss_dssp SCSEEEECCCCSH-HHHHHHHHTTC-EEEEEECTTCCCSCCSGGGSCCCCCTTCEEEECC-SCHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCcH-HHHHHHHHCCC-ceEEEECcccchhhcCCCcccccccCCCEEEECC-CCHHHHHHHHHHHHh
Confidence 3467788888754 55588888853 111111 2344455554 3567899999776 899999999988875
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.30 E-value=4e-07 Score=81.13 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=32.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263 82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF 121 (286)
Q Consensus 82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~ 121 (286)
.++++.+.+ |++++|+|||||||||++++|+++++...+
T Consensus 166 ~~l~~~i~~-G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 166 SFLRRAVQL-ERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp HHHHHHHHT-TCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred HHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 555666665 999999999999999999999999874333
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.27 E-value=3.4e-07 Score=78.27 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..++|+||||||||||+++|+|+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999876
No 214
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.26 E-value=1.5e-07 Score=81.36 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCH
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSK 145 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~ 145 (286)
+.+++|+||+|||||||+..|+..++. ++..+..+|++|+.++.+|.++++++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~ 72 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDI 72 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEecc
Confidence 578999999999999999999987653 223345567777777777777766543
No 215
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.25 E-value=2.6e-05 Score=66.07 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhh----------ccCCCcEEEECCCCCHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE----NREELLVRIATAREEVQ----------HVKNFDYVVVNAEGKLDSAVKLV 268 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~----t~~~i~~rl~~~~~~~~----------~~~~~d~viv~~~G~i~~~~~~l 268 (286)
.|+++|+||.+ .+.+.+|+.+|++. .......++........ ....+..++++.+++++++.++|
T Consensus 174 ~pd~vi~L~~~-~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I 252 (263)
T 1p5z_B 174 ELDGIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL 252 (263)
T ss_dssp CCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred CCCeEEEEECC-HHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHH
Confidence 68899999997 78888998877531 11223333333222210 01113466677778999999999
Q ss_pred HHHHHHHH
Q 043263 269 ESVIDAEK 276 (286)
Q Consensus 269 ~~~i~~~~ 276 (286)
.+.+....
T Consensus 253 ~~~l~~~l 260 (263)
T 1p5z_B 253 VEKVKEFL 260 (263)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.24 E-value=4.9e-07 Score=72.36 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.++|+|||||||||++++|++++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999874
No 217
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.23 E-value=2e-06 Score=81.04 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-cceeeeCHHHHHHHhhcc-chhhhheeccccc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-KDYFFVSKEEFLQMVDKN-ELLEYALVYGDYK 168 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 168 (286)
+|.+|.|+|.+||||||+++.|+..+.. .| ..+..++.+.++..+..+ .|... ....++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~-----------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~~~i~ 456 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ-----------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRHTNIQ 456 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc-----------------cCCceEEEECcHHHHHHhccccCCChh-HHHHHHH
Confidence 4789999999999999999999987531 12 333344444433321110 01000 0000000
Q ss_pred CccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHhcCCCHHH-H-HHHHHHHH
Q 043263 169 GIPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGD--SAVFVFLAAESEMALVERLVERKTENREE-L-LVRIATAR 241 (286)
Q Consensus 169 ~~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~--~~~~Illd~~~~~~l~~rl~~r~~~t~~~-i-~~rl~~~~ 241 (286)
...+.+...+..|..++++.- ......++.++.. +.++||||++ .+.+.+|..+ .... . ...+....
T Consensus 457 -ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~-~ev~~~R~~r----~l~~~~~~~~i~~~~ 530 (573)
T 1m8p_A 457 -RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATP-LEHCEQSDKR----GIYAAARRGEIKGFT 530 (573)
T ss_dssp -HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCC-HHHHHHHCSS----CHHHHHHTTSSSSCB
T ss_pred -HHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCC-HHHHHHHhcc----cchhhhhHHHHHHHH
Confidence 001123344566766666531 1122344555432 3478899987 7777777421 1100 0 00000000
Q ss_pred HHh-hc--cCCCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263 242 EEV-QH--VKNFDYVVVNAEG-KLDSAVKLVESVIDA 274 (286)
Q Consensus 242 ~~~-~~--~~~~d~viv~~~G-~i~~~~~~l~~~i~~ 274 (286)
... .+ ...+|.+| +.++ ++++++++|.+.+..
T Consensus 531 ~~r~~~~~p~~~dl~I-Dts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 531 GVDDPYETPEKADLVV-DFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp TTTBCCCCCSSCSEEE-CTTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccCCCCEEE-ECCCCCHHHHHHHHHHHHHh
Confidence 000 01 12456444 5444 899999999998865
No 218
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.21 E-value=7.3e-07 Score=74.70 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHHhhc----------cCCCcEEEECCCCCHHHHHHHH
Q 043263 203 DSAVFVFLAAESEMALVERLVERKTE--N--REELLVRIATAREEVQH----------VKNFDYVVVNAEGKLDSAVKLV 268 (286)
Q Consensus 203 ~~~~~Illd~~~~~~l~~rl~~r~~~--t--~~~i~~rl~~~~~~~~~----------~~~~d~viv~~~G~i~~~~~~l 268 (286)
.|+++||||++ .+.+.+|+.+|+.. . ......++......... ...+..++++.++++++..+++
T Consensus 149 ~pd~~i~l~~~-~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQAS-PQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECC-HHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHH
T ss_pred CCCEEEEEECC-HHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHH
Confidence 68999999997 77888999887542 1 12333444444333210 1345667777777776666666
Q ss_pred HHHHHHHH
Q 043263 269 ESVIDAEK 276 (286)
Q Consensus 269 ~~~i~~~~ 276 (286)
..+++...
T Consensus 228 ~~i~~~i~ 235 (241)
T 2ocp_A 228 EDLMREVN 235 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.19 E-value=2.3e-07 Score=82.44 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+++|+|||||||||++++|++++.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 77999999999999999999999875
No 220
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.19 E-value=2.3e-07 Score=84.16 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
.+.++++++.|+. .|.++ + .. +|.+++|+|||||||||++++|++++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~-~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KR-PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TS-SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-Hh-cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4577788777754 45555 2 23 4899999999999999999999998763
No 221
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.19 E-value=1.2e-07 Score=88.68 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=30.2
Q ss_pred cccCCCC-CCCCCCeEEEEEcCCCCCHHHHHHH--HHhccC
Q 043263 80 AFDSNPV-CPPPNPLIIVISGPSGVGKDTVIKK--LRESRD 117 (286)
Q Consensus 80 ~l~~~~~-~~~~~g~ii~l~G~sGsGKSTl~~~--L~~~~~ 117 (286)
.|+++++ .+++ |++++|+||||||||||+++ ++++..
T Consensus 27 ~Ld~i~~G~i~~-Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPI-GRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEET-TSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCC-CeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4555555 5555 99999999999999999999 678764
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=1.1e-06 Score=74.21 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=42.1
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+.+++++.+.|+. .+.++++.+++ | ++|+|||||||||++++|++...
T Consensus 23 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~-g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 23 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCCS-E--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence 345788888888865 67888888876 7 99999999999999999998764
No 223
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.16 E-value=7.7e-07 Score=71.92 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
|++++|+|||||||||++++|++++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 57899999999999999999999874
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.12 E-value=1.3e-06 Score=72.11 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|++++|+|||||||||++++|++.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999999864
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.12 E-value=1.7e-06 Score=74.02 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=42.2
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+.+++++.+.|+. .+.++++.+++ | ++|+|||||||||++++|++...
T Consensus 47 ~~~~~l~~l~~~~~~~~~l~~~~~~~~~-g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 47 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCCC-E--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCC-e--EEEECCCcChHHHHHHHHHHHcC
Confidence 345678899988865 67888888876 7 99999999999999999998764
No 226
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.12 E-value=6.4e-06 Score=72.28 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+|+|+||+||||||+++.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998765
No 227
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.11 E-value=1.3e-06 Score=75.74 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.|++++|+||||||||||+++|+++..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 389999999999999999999999876
No 228
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.09 E-value=1.7e-06 Score=72.36 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 043263 87 CPPPNPLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
-+++ |++++|+||||||||||+++|+
T Consensus 26 gi~~-G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPE-GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEET-TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCC-CcEEEEEeCCCCCHHHHHHHHH
Confidence 3444 9999999999999999999999
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.05 E-value=1.3e-06 Score=76.24 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
.+|+|+||+||||||+++.|+..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 58999999999999999999988753
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.02 E-value=3.5e-06 Score=73.14 Aligned_cols=26 Identities=35% Similarity=0.838 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.|++++|+||||||||||+++|. ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 38999999999999999999999 775
No 231
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.01 E-value=2.9e-06 Score=67.63 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 83 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+.+.+ | +.+|+|+|||||||++++|..++.
T Consensus 19 ~~~~~~~~-g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 19 KVVIPFSK-G-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CEEEECCS-S-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEecCC-C-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444444 6 899999999999999999998764
No 232
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.01 E-value=4e-06 Score=77.96 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcce
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLH 120 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~ 120 (286)
+|.+++|+||+||||||++++|+++++...
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 488999999999999999999999987433
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=8.3e-07 Score=84.38 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 043263 95 IVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++|+|+||||||||+++|+|++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-
T ss_pred EEEECCCCChHHHHHHHHhCCCC
Confidence 99999999999999999999864
No 234
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.00 E-value=4e-07 Score=75.68 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+++|+|||||||||++++|++++.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 6789999999999999999999876
No 235
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.00 E-value=2.1e-06 Score=76.58 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=28.5
Q ss_pred CCCCCCCCC--CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 83 SNPVCPPPN--PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 83 ~~~~~~~~~--g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+++.+. + ++.++|+|+||||||||+++|+|++.
T Consensus 160 ~v~~~v~-~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 160 FIPKEAR-PFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp GSCTTTG-GGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCCHHHH-HhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444443 4 78999999999999999999999986
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.00 E-value=1.2e-06 Score=75.66 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|+|||||||+++.|++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999999999864
No 237
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.99 E-value=3.5e-06 Score=73.64 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY 140 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~ 140 (286)
+.++++|+|+|||||||+++.|.+........+. .+..|+ ++|.++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi----~~d~G~i~idg~~l 50 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVI----ENEFGEVSVDDQLI 50 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEE----CSSCCSCCEEEEEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEE----EecCcccCccHHHH
Confidence 3678999999999999999999998632222222 155666 455443
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=4.8e-06 Score=73.72 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|+||||||||+++|++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 389999999999999999999999875
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.98 E-value=8.1e-06 Score=70.57 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.++++++.|+....++++. + |++++++|++|+||||++..|++.+.
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~~--~-~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 76 ATVYEALKEALGGEARLPVLK--D-RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp HHHHHHHHHHTTSSCCCCCCC--S-SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCceeecC--C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367889999997533555665 4 89999999999999999999999875
No 240
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=1.4e-06 Score=78.91 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.2
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+.++||++.|+. ++.++++ .|+|+|+||||||||+++|++...
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf-------~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEF-------TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCE-------EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCEEEecCCCE-------EEEEECCCCCcHHHHHHHHhCCCC
Confidence 45888999999975 4555553 359999999999999999998753
No 241
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=3.7e-06 Score=66.98 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
|..++|+||+||||||+++++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999999876
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.90 E-value=5e-06 Score=71.12 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=31.0
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.++++.++. | ++|+|||||||||++++|++.+.
T Consensus 35 ~l~~~~l~~~~-G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKALGLVTPA-G--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHTTCCCCS-E--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCC-e--EEEECCCCCcHHHHHHHHHHHcC
Confidence 57777887776 7 99999999999999999999875
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.87 E-value=7.2e-06 Score=73.24 Aligned_cols=29 Identities=28% Similarity=0.490 Sum_probs=26.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+ |.+++|+|||||||||++++|++++.
T Consensus 133 ~~~-g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRK-MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSS-SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcC-CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444 99999999999999999999999876
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.86 E-value=2.2e-06 Score=74.44 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 87 CPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.+ |++++|+|+||||||||+++|.+...
T Consensus 169 ~~~~-G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 169 PHFQ-DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGT-TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hhcC-CCEEEEECCCCCCHHHHHHHhccccc
Confidence 3444 99999999999999999999998865
No 245
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.86 E-value=8.4e-06 Score=70.30 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+|+|+|++||||||++++|.+++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999999875
No 246
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.85 E-value=3.3e-06 Score=84.46 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=36.2
Q ss_pred HHHhHh-----HHHHh-cc--cccCCCCCCCC------CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 67 IELLRS-----LEASL-GH--AFDSNPVCPPP------NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 67 ~i~~~~-----v~~~~-~~--~l~~~~~~~~~------~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
.+.+++ |++.| +. ++.++++.+.+ +|++++|+|||||||||+++.+ |++
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 478888 88888 43 67888877754 2799999999999999999999 875
No 247
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.83 E-value=0.00024 Score=57.55 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=49.2
Q ss_pred cEEEEeCH--HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263 184 DIVLRVDI--QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261 (286)
Q Consensus 184 ~~v~~~~~--q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i 261 (286)
.+++++-+ --+...+..++....+|-+.++ ++...+|....... .. .|..+.- ......+|.+|+|+ |++
T Consensus 105 ~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as-~~~R~~Rg~~~~~~-~D--d~esE~g---L~~~~~~D~vI~Nd-gt~ 176 (202)
T 3ch4_B 105 IWLVSDTRRVSDIQWFREAYGAVTQTVRVVAL-EQSRQQRGWVFTPG-VD--DAESECG---LDNFGDFDWVIENH-GVE 176 (202)
T ss_dssp EEEECCCCSHHHHHHHHHHHGGGEEEEEEEEC-HHHHHHTTCCCCTT-TT--TSHHHHT---TTTCCCCSEEEEEC-SCH
T ss_pred cEEEeCCCCHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHhhhcccc-cc--ccccccC---CCCCCcCCEEEEeC-CCH
Confidence 35555532 3355566666422344557775 77777774322111 11 1211111 11124799999877 799
Q ss_pred HHHHHHHHHHHHHHHhc
Q 043263 262 DSAVKLVESVIDAEKAK 278 (286)
Q Consensus 262 ~~~~~~l~~~i~~~~~~ 278 (286)
+++.+++.+++...+..
T Consensus 177 eel~~~v~~ll~~~~~~ 193 (202)
T 3ch4_B 177 QRLEEQLENLIEFIRSR 193 (202)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877643
No 248
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=1.3e-05 Score=71.61 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=30.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.++++.+++ |++++|+||+||||||++++|++.+.
T Consensus 158 ~l~~~~~~i~~-~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPK-KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTT-CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCC-CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555666666 99999999999999999999998753
No 249
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=7.1e-06 Score=63.56 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
|+.++|+||+|||||||++++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999763
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.80 E-value=6.9e-06 Score=67.70 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|++++|+|||||||||+++.|++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999999765
No 251
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.80 E-value=5.1e-06 Score=72.08 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=20.2
Q ss_pred HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.||++.|+. ++.+++ ..|+|+|+||||||||++.|.+.
T Consensus 2 ~~l~~~~~~~~~l~~~~-------~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFE-------FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------------C-------EEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCCcceECCEEEEcCCC-------EEEEEECCCCCCHHHHHHHHhCC
Confidence 467777764 455554 34699999999999999999875
No 252
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.79 E-value=0.00038 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.+|.++|.+||||||+++.|+..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998765
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.76 E-value=1.3e-05 Score=63.74 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+++|+|++||||||+++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999988754
No 254
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.75 E-value=1e-05 Score=79.05 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++.++++. . +|++++|+|||||||||+++++++.
T Consensus 597 vlndisl~-~-~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS-P-QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC-S-SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc-C-CCcEEEEECCCCCChHHHHHHHHHH
Confidence 45566666 4 4999999999999999999999986
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.73 E-value=1.6e-05 Score=62.78 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+++|+|++||||||++..|...+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 56899999999999999999987754
No 256
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.73 E-value=7.9e-06 Score=80.69 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=30.2
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++.++++.+.+ |++++|+|||||||||+++++++.
T Consensus 662 V~ndvsl~~~~-g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 662 VPNNTDLSEDS-ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEECTTS-CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ecccccccCCC-CeEEEEECCCCCchHHHHHHHHHH
Confidence 46677777776 999999999999999999998754
No 257
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.66 E-value=1.2e-05 Score=70.98 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+++.+.|+. .+.++++.... +.+++|+|++|+||||+++.|++.+.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~-~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGN-TLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSC-SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCC-CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455556655553 34455555554 99999999999999999999998753
No 258
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=1.8e-06 Score=76.05 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..++|+||||+||||++++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6799999999999999999999863
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.64 E-value=8.4e-06 Score=72.44 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=41.1
Q ss_pred hHHHhHhHHHHhcc---ccc--------------CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 66 KIELLRSLEASLGH---AFD--------------SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 66 ~~i~~~~v~~~~~~---~l~--------------~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+.++||++.|+. .+. +..+.+.+ |+.++|+||+|+|||||+++|++..
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~r-GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBT-TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecC-CcEEEEecCCCCChhHHHHHHHHHH
Confidence 45789999999975 455 45556665 9999999999999999999998864
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.64 E-value=3e-05 Score=63.32 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
+|++++|+|+|||||||+++.|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999999987
No 261
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.63 E-value=1.8e-05 Score=76.84 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
|++++|+|||||||||++++++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999999874
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.63 E-value=4.1e-05 Score=66.89 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++++...+ |++++|+|++||||||++..|++.+.
T Consensus 96 ~~l~~~~~~-~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 96 YRIDFKENR-LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCCTTS-CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred cCccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567776665 99999999999999999999998874
No 263
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=2.5e-05 Score=64.92 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+|++++|+|||||||||+++.|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999999984
No 264
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.62 E-value=2.2e-05 Score=69.68 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=44.0
Q ss_pred EeCHHHHHHHHHHh---------CCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 188 RVDIQGARTLRRIL---------GDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 188 ~~~~q~v~iaral~---------~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
+|+.|++.+|++++ ..|+++++ ||+.....+.+.+.+.. .+...++| . . . .||+
T Consensus 268 ~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th-~-~-------~-~~~~ 336 (359)
T 2o5v_A 268 RGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTE-L-A-------P-GAAL 336 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESS-C-C-------T-TCSE
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEe-c-c-------c-cCCE
Confidence 46779999999998 78888888 77766666666666543 23333444 1 1 1 7899
Q ss_pred EEECCCCCH
Q 043263 253 VVVNAEGKL 261 (286)
Q Consensus 253 viv~~~G~i 261 (286)
++++++|++
T Consensus 337 i~~l~~G~i 345 (359)
T 2o5v_A 337 TLRAQAGRF 345 (359)
T ss_dssp EEEEETTEE
T ss_pred EEEEECCEE
Confidence 998888865
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.61 E-value=8.1e-05 Score=64.55 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|++++|+|++||||||++..|++.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 389999999999999999999999874
No 266
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.60 E-value=9.5e-05 Score=68.40 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=41.1
Q ss_pred hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+.+++++...|.. .+.++.+.+++ | +.|+||+|+|||||+++|++...
T Consensus 38 ~~k~~l~~lv~~l~~~~~~~~lg~~ip~-G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHHHHCGGGTTTTSCCCCS-E--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhchhhhhhccCCCCc-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence 345678888777754 67788887776 7 99999999999999999998764
No 267
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.60 E-value=2e-05 Score=78.02 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L 112 (286)
+.++++.+.+ |++++|+|||||||||+++++
T Consensus 652 ~ndisl~~~~-g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 652 PNDVYFEKDK-QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEETTT-BCEEEEECCTTSSHHHHHHHH
T ss_pred cccceeecCC-CeEEEEECCCCCCHHHHHHHH
Confidence 4455666665 999999999999999999999
No 268
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.56 E-value=1.8e-05 Score=68.22 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+|+|+||+||||||+++.|+..++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999988654
No 269
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.54 E-value=4.4e-05 Score=68.46 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+|..++|+|+||||||||+++|.+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999999984
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.52 E-value=5.8e-05 Score=65.22 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|.+++|+|++||||||++..|++.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999998874
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.51 E-value=4e-05 Score=67.82 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
.-+++ |++++|+||||||||||++.|++..
T Consensus 126 ggi~~-G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIET-QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEES-SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCC-CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45665 9999999999999999999999876
No 272
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.50 E-value=0.00013 Score=66.11 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+..+++++.|+..-.++++. + +.+++++|++||||||++..|++.+.
T Consensus 76 ~~v~~~L~~~~~~~~~~i~l~--~-~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 76 ATVYEALKEALGGEARLPVLK--D-RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp HHHHHHHHHHTTSSCCCCCCC--S-SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccCC--C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356778889998533455555 4 89999999999999999999998875
No 273
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.49 E-value=5.1e-05 Score=71.11 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=37.5
Q ss_pred HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263 68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
+-++++.+.|.. .+..+++.+ + |.+++|+||||+||||++++|++.+..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~-g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-K-GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-C-SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-C-CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 445677777754 345555555 3 899999999999999999999998753
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00012 Score=63.13 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=38.6
Q ss_pred HHHhHhHHHHhcccccC-CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLGHAFDS-NPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~~~l~~-~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+..+++...|+....+ +++.. + +.+++++|++|+||||++..|++.+.
T Consensus 74 ~~~~~~l~~~~~~~~~~~i~~~~-~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 74 KIVYDELSNLFGGDKEPKVIPDK-I-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHHHHTTCSCCCCCSCSS-S-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCC-C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46778888889864344 55543 3 89999999999999999999998764
No 275
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.46 E-value=6.6e-05 Score=68.48 Aligned_cols=51 Identities=25% Similarity=0.482 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF 142 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~ 142 (286)
...++|+|+||+|||||++.|.+.........+.+|+.+..|. ++|.++..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l 232 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 232 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEE
Confidence 4579999999999999999999874323333444555565555 45655443
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.45 E-value=6.6e-05 Score=64.10 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+++ |++++|+||||||||||++.|++..
T Consensus 27 l~~-G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVA-GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EET-TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 444 9999999999999999999999754
No 277
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.45 E-value=6.6e-05 Score=60.19 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..++|+|++|||||||++.|++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999999864
No 278
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.44 E-value=9.2e-05 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..+.+|+|||||||||++.+|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999743
No 279
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.41 E-value=7e-05 Score=58.97 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++..|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3788999999999999999999875
No 280
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.40 E-value=9e-05 Score=59.65 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..++|+|++|||||||++.|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999999863
No 281
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=66.56 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
|.+++|+|||||||||++++|.+++.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 78999999999999999999998754
No 282
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.28 E-value=0.0015 Score=60.06 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.+|.++|.+||||||+++.|+..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 283
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=63.88 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.+|+|+|++|||||||++.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999865
No 284
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.22 E-value=4.9e-05 Score=68.75 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=28.1
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
.++++.+.. +..++|+|+||||||||+++|++..
T Consensus 148 ~~i~lelk~-g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELML-IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECC-SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcC-CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 344555555 8899999999999999999999874
No 285
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.16 E-value=0.00017 Score=63.95 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.1
Q ss_pred HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..++++...|+. .|.++++.+| .|+|+|++|||||||++.|.|.
T Consensus 9 ~~l~~~~~~~~~~~~~~~l~~i~~~lp----~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 9 NKIQRACTALGDHGDSSALPTLWDSLP----AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp HHTTTTTTSCSSCCSSCCC----CCCC----EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhCccccccccccccccCC----EEEEECCCCCcHHHHHHHHhCC
Confidence 355666666653 3555555555 5999999999999999999983
No 286
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.16 E-value=0.00022 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..++|+|++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999875
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.10 E-value=0.00031 Score=61.86 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHhCCCc--EEEEEecCCHHHHHHHHHHhc---CC--CHHHHHHHHHHHH----HH-hhccCCCcEEEEC
Q 043263 196 TLRRILGDSA--VFVFLAAESEMALVERLVERK---TE--NREELLVRIATAR----EE-VQHVKNFDYVVVN 256 (286)
Q Consensus 196 iaral~~~~~--~~Illd~~~~~~l~~rl~~r~---~~--t~~~i~~rl~~~~----~~-~~~~~~~d~viv~ 256 (286)
-++.++.... ..||+|++ ++.+.+|+.+|. +. +.+.+..++.... .. ......||.|+.-
T Consensus 279 ~l~~l~D~~~~~~~i~Vdad-~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 279 KIYKTLADTGALLVYKIDID-YEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIVHI 350 (359)
T ss_dssp HHHHHHHTTTCEEEEEEECC-HHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHHHTBCCCTTEEEE
T ss_pred hhhhccccccceEEEEEECC-HHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHhhcCCCCCEEEEe
Confidence 4455661111 78999997 778888888873 55 7888877776421 11 1122467766653
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.10 E-value=0.0002 Score=64.45 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHH
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
+++ |++++|+||||||||||++.|+
T Consensus 175 I~~-Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VET-GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EET-TSEEEEEESTTSSHHHHHHHHH
T ss_pred cCC-CcEEEEEcCCCCChHHHHHHHH
Confidence 344 9999999999999999999664
No 289
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.09 E-value=0.00032 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+.+|+|||||||||++.+|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997543
No 290
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00028 Score=62.03 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh-ccC
Q 043263 95 IVISGPSGVGKDTVIKKLRE-SRD 117 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~-~~~ 117 (286)
+.|+||+|+||||++++|++ ++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999 544
No 291
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00032 Score=58.89 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=23.9
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+......++. | +.|+||+|+||||+++.|++.+.
T Consensus 37 ~~~~~~~~~~-~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPK-G--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCC-E--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCC-e--EEEECcCCCCHHHHHHHHHHHcC
Confidence 4444444443 4 89999999999999999998764
No 292
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.00035 Score=57.91 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
+|++++|+|+|||||||++..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999766654
No 293
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.03 E-value=0.00038 Score=61.17 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=38.3
Q ss_pred EeCHH------HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 188 RVDIQ------GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 188 ~~~~q------~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
+|++| +++++++++.+|+++|+ ||+.....+.+.|.+. .+.+...++|+... ...||+|
T Consensus 251 ~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-------~~~~d~~ 323 (339)
T 3qkt_A 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-------KDAADHV 323 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-------GGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-------HHhCCEE
Confidence 45667 56677788767777666 5554445555555442 22355566776332 4678998
Q ss_pred EECC
Q 043263 254 VVNA 257 (286)
Q Consensus 254 iv~~ 257 (286)
++++
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 294
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.03 E-value=0.00015 Score=70.95 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263 185 IVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYV 253 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~v 253 (286)
.+++|+.|++++|+++..+|. ++|| ||+.+.+.+.+ +|.+. +.+...|.|+++. +..||+|
T Consensus 379 tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~-------l~~aD~i 450 (842)
T 2vf7_A 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDV-------IRRADWL 450 (842)
T ss_dssp GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHH-------HTTCSEE
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHH-------HHhCCEE
Confidence 455788999999999997774 4444 44444555555 44443 3488889999986 4679999
Q ss_pred EEC
Q 043263 254 VVN 256 (286)
Q Consensus 254 iv~ 256 (286)
+++
T Consensus 451 i~l 453 (842)
T 2vf7_A 451 VDV 453 (842)
T ss_dssp EEE
T ss_pred EEe
Confidence 999
No 295
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.01 E-value=0.00035 Score=60.41 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+.+|+|+|++|+|||||++.|.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 668999999999999999999975
No 296
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.00043 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.98 E-value=0.00035 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999875
No 298
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.98 E-value=0.00032 Score=62.30 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+++|+|++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999764
No 299
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.97 E-value=0.00052 Score=65.13 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.|..++|+||+|+||||++++|++++.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 488999999999999999999999875
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.97 E-value=0.00047 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
|..|+|+||+||||||++..|+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 7889999999999999999998764
No 301
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.96 E-value=0.00022 Score=70.45 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=47.0
Q ss_pred EEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 185 IVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
.+++|+.||+++|+++..+|. ++|| ||+.+...+.+.|.+. .+.|...++|+++.. ..||+|+
T Consensus 464 ~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~-------~~aD~ii 536 (916)
T 3pih_A 464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI-------RNADHII 536 (916)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH-------HTCSEEE
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-------HhCCEEE
Confidence 456788899999999997665 5555 5555566666666543 244778889988763 4599999
Q ss_pred EC
Q 043263 255 VN 256 (286)
Q Consensus 255 v~ 256 (286)
++
T Consensus 537 ~l 538 (916)
T 3pih_A 537 DI 538 (916)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 302
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.95 E-value=0.00067 Score=62.34 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=35.1
Q ss_pred HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+++++...+.. .+.++...++. | +.|+||+|+||||+++++++...
T Consensus 25 ~~~l~e~v~~l~~~~~~~~~g~~~p~-g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 25 IEELKEVVEFLKDPSKFNRIGARMPK-G--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHHHCTHHHHTTTCCCCS-E--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhChHHHhhcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHcC
Confidence 4456666555543 45566655554 6 88999999999999999998754
No 303
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00057 Score=59.92 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.2
Q ss_pred CeE--EEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLI--IVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~i--i~l~G~sGsGKSTl~~~L~~~~ 116 (286)
|.+ +.|.||+|+||||+++++++.+
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444 8999999999999999999875
No 304
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.89 E-value=0.00092 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+||||++++|++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 66799999999999999999998764
No 305
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.85 E-value=0.00024 Score=70.30 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=46.5
Q ss_pred cEEEEeCHHHHHHHHHHhCCC-cEEEEEecCC-------HHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263 184 DIVLRVDIQGARTLRRILGDS-AVFVFLAAES-------EMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDY 252 (286)
Q Consensus 184 ~~v~~~~~q~v~iaral~~~~-~~~Illd~~~-------~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~ 252 (286)
..+++|+.||+++|+++..++ +.+++||+|+ .+.+.+ +|++. +.|...|.|+++. +..||+
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeHdl~~-------i~~ADr 591 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNTLIVVEHDEDT-------IEHADW 591 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-------HHTCSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc-CCEEEEECCCHHH-------HHhCCE
Confidence 346678899999999998764 4566666665 334443 44443 4488889999886 356999
Q ss_pred EEEC
Q 043263 253 VVVN 256 (286)
Q Consensus 253 viv~ 256 (286)
|+++
T Consensus 592 Ii~L 595 (993)
T 2ygr_A 592 IVDI 595 (993)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9999
No 306
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.85 E-value=0.00024 Score=70.03 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=45.7
Q ss_pred EEEEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263 185 IVLRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV 254 (286)
Q Consensus 185 ~v~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi 254 (286)
.+++|+.||+++|+++...+ .++|| ||+...+.+.+.|++. .+.|...|.|+++. +..||+|+
T Consensus 504 tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-------i~~ADrIi 576 (972)
T 2r6f_A 504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-------MLAADYLI 576 (972)
T ss_dssp GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH-------HHSCSEEE
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HHhCCEEE
Confidence 45678889999999998764 44444 4444455565544432 24488889999886 35699999
Q ss_pred EC
Q 043263 255 VN 256 (286)
Q Consensus 255 v~ 256 (286)
++
T Consensus 577 ~L 578 (972)
T 2r6f_A 577 DI 578 (972)
T ss_dssp EE
T ss_pred Ee
Confidence 98
No 307
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.85 E-value=0.0003 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
...|+|+|++|+|||||++.|.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 308
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=0.00097 Score=65.37 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=25.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
+.+ +..+.|+||+||||||++++|++.++.
T Consensus 235 i~~-~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 235 VKP-PRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCC-CCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCC-CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 444 778999999999999999999998753
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.82 E-value=0.00052 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|.++.|.||+|||||||+..++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998764
No 310
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.79 E-value=0.00064 Score=62.92 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|.+|.|+|.+||||||+++.|+..+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998874
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.71 E-value=0.00076 Score=61.13 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+++++|++||||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999997764
No 312
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.001 Score=54.60 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+||||+++.++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 67799999999999999999987653
No 313
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.70 E-value=0.00094 Score=53.20 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++++++... ...|+|+|++|+|||||++.|.+.
T Consensus 14 l~~~~~~~~--~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 14 LASLGLWNK--HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHhhccCC--ccEEEEECCCCCCHHHHHHHHhcC
Confidence 344444333 346899999999999999999863
No 314
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.70 E-value=0.00092 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
...|+|+|++|+|||||++.|.+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4569999999999999999999753
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.68 E-value=0.0014 Score=50.98 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3677999999999999999999864
No 316
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.0013 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|+||+|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998765
No 317
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.64 E-value=0.00033 Score=65.19 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=45.7
Q ss_pred EEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263 187 LRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNA 257 (286)
Q Consensus 187 ~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~ 257 (286)
++|++|++.+|++++.+| +++|| ||+.....+.+.|.+. .+.+...++|++... ..||+++++.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~-------~~~d~~~~~~ 471 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-------ARAHHHYKVE 471 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHH-------HHSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-------HhCCEEEEEe
Confidence 466789999999998788 77777 6666566666655542 134667778887653 4599998884
Q ss_pred C
Q 043263 258 E 258 (286)
Q Consensus 258 ~ 258 (286)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 3
No 318
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.63 E-value=0.0014 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..++++|++|+||||+++.|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 319
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.63 E-value=0.0018 Score=55.40 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+||||+++.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56699999999999999999998765
No 320
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.62 E-value=0.0012 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
-..|+|+|++|||||||++.|.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3569999999999999999999863
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0014 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++||||||+++.|.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.59 E-value=0.0013 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-.|+|+|++|+|||||++.|.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 323
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0014 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+.|.||+|+||||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 669999999999999999998765
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.58 E-value=0.0016 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
|.-+.|+|+||+||||++..|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 777999999999999999988764
No 325
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.53 E-value=0.001 Score=59.54 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+..++|+|++|+|||||++.|.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 678999999999999999999975
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.51 E-value=0.0016 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+++|++|+|||||++.|.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 327
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.51 E-value=0.0023 Score=49.39 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999753
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.50 E-value=0.0017 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999998754
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.50 E-value=0.0016 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+++|++|+||||+++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 330
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.50 E-value=0.0022 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 356999999999999999999974
No 331
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.48 E-value=0.0012 Score=58.26 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|.++.|.|++||||||++..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998887543
No 332
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999864
No 333
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.47 E-value=0.0015 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999764
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-.|+++|++|+|||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 335
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.0017 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 336
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.0015 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|+||+|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998765
No 337
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.45 E-value=0.0017 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.45 E-value=0.0018 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.45 E-value=0.0016 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.45 E-value=0.0019 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|||||||++.|.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 341
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.44 E-value=0.0018 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 342
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.44 E-value=0.0031 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.-+.|.||+|+||||+++.++..+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45599999999999999999998765
No 343
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.44 E-value=0.0014 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|.+|+|-|+.||||||++++|+..+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999998775
No 344
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0019 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+++|++|+|||||++.|.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999863
No 345
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.42 E-value=0.0016 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 043263 94 IIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.42 E-value=0.0022 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999865
No 347
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.42 E-value=0.0012 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-.|+|+|++|+|||||++.|.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 35899999999999999999754
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.40 E-value=0.003 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999875
No 349
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0021 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+++|+|.+||||||+++.|.+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.40 E-value=0.002 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
...+.|+||+|+||||+++.|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999999875
No 351
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.38 E-value=0.002 Score=54.82 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|||||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356999999999999999999975
No 352
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.38 E-value=0.002 Score=57.29 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 043263 92 PLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
+.+.+|+|+|||||||++.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999987
No 353
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0029 Score=56.68 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF 121 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~ 121 (286)
+| +.|.||+|+|||++++++++......+
T Consensus 183 rG--vLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 183 KG--VILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp CC--EEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred Cc--eEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 36 899999999999999999988653333
No 354
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0025 Score=57.81 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCcc
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDSL 119 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~~ 119 (286)
|.|.||+|+|||++++++++.+...
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 9999999999999999999886533
No 355
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.37 E-value=0.0025 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 466999999999999999999864
No 356
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.37 E-value=0.00077 Score=59.78 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=28.4
Q ss_pred hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..+.+.+++..|+. .+.+.. ..|+|+|++|+|||||++.|.+.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~-------~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFE-------FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCE-------ECEEECCCTTSCHHHHHHHHTTC
T ss_pred ceEEeccchHHhCCeeecCCCC-------EEEEEEcCCCCCHHHHHHHHhCC
Confidence 34677788877764 223222 34799999999999999998764
No 357
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.36 E-value=0.0021 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 358
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.36 E-value=0.003 Score=60.51 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
++..++|+|++|+|||||++.|.+..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 48999999999999999999999764
No 359
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.35 E-value=0.0023 Score=56.22 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+++ |.++.|.|++||||||++..++..
T Consensus 119 l~~-G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IES-MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCS-SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 444 999999999999999999998864
No 360
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0026 Score=57.59 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=22.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCc
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
+.|.||+|+|||++++.+++.+..
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999999987653
No 361
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.34 E-value=0.0022 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 362
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.33 E-value=0.0022 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999874
No 363
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.33 E-value=0.002 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-+|+|+|.+|+|||||++.|.+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 567999999999999999999875
No 364
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.33 E-value=0.0022 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.33 E-value=0.0035 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 366
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.32 E-value=0.0024 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+.|.||+|+||||+++.++..+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 367
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.31 E-value=0.0024 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.-+.|.|++|+|||++++.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4458999999999999999998764
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.31 E-value=0.0024 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 043263 94 IIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.|+|+|++|+|||||++.|.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 369
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.30 E-value=0.0017 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999754
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.29 E-value=0.0024 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.|.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 371
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.002 Score=56.76 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|+||+|+||||+++.+++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 372
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.27 E-value=0.0022 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|||||||++.|.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999876
No 373
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.0025 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 043263 92 PLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
|.++.++|+.||||||++-.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999984443
No 374
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.27 E-value=0.0023 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 375
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.27 E-value=0.0032 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.-+.|.||+|+||||+++.++..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34488999999999999999998754
No 376
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.27 E-value=0.0017 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
+...|+|+|++|+|||||++.|.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 367799999999999999998874
No 377
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.27 E-value=0.0022 Score=50.50 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 043263 94 IIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.|+|+|++|+|||||++.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0026 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 379
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.26 E-value=0.0022 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|.||+|+||||+++.++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999865
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.25 E-value=0.0028 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+++|.+|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 381
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.25 E-value=0.0037 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+|||++++.++..+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688899999999999999998764
No 382
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.25 E-value=0.0026 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 383
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0031 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999875
No 384
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.25 E-value=0.0025 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
...|+|+|.+|+|||||++.|.+.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4569999999999999999998753
No 385
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.24 E-value=0.0027 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456999999999999999999864
No 386
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.22 E-value=0.0031 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..|+|+|++|+|||||++.|.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4699999999999999999987654
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.21 E-value=0.003 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999877653
No 388
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.21 E-value=0.0018 Score=56.59 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+|+|-|+.||||||+++.|+..+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999998764
No 389
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.21 E-value=0.0029 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.+.|+||+|+||||+++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998764
No 390
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.20 E-value=0.0027 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.18 E-value=0.0029 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 392
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.18 E-value=0.0032 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.9
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++.....+ .|.-++|+|+||+||||++..|.+.
T Consensus 135 ~H~~~v~~--~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 135 LHGVLVDV--YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EESEEEEE--TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEEEEE--CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 44443333 3788999999999999999999874
No 393
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 394
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.17 E-value=0.0042 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 577999999999999999999764
No 395
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.17 E-value=0.0034 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5669999999999999999998765
No 396
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.17 E-value=0.003 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.15 E-value=0.0031 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 398
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.14 E-value=0.0029 Score=51.30 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+|+ ...+.|.||+|+||||++..|+..+.
T Consensus 55 iPk-kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPK-KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTT-CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCc-ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 443 55699999999999999999998753
No 399
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.14 E-value=0.0035 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 400
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.14 E-value=0.0036 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+||||+++.|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999998865
No 401
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0032 Score=57.12 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+|+++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999987653
No 402
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0026 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 403
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.13 E-value=0.0035 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999864
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.003 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.12 E-value=0.0033 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999753
No 406
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0023 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
++.+|+|-|+.||||||+++.|...+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999998764
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.12 E-value=0.0033 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 408
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.12 E-value=0.0034 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|||||||++.|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999864
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.11 E-value=0.0037 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 410
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.11 E-value=0.0036 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999864
No 411
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.10 E-value=0.0032 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999875
No 412
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.10 E-value=0.0027 Score=56.03 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
...++|+|++|+||||+++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998753
No 413
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.08 E-value=0.0032 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 043263 94 IIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.++|+|++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999876
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.08 E-value=0.0035 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|+|||||++.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999753
No 415
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.07 E-value=0.0056 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+||||+++.|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45599999999999999999998764
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.06 E-value=0.0034 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456999999999999999999864
No 417
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.0038 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
+|+.+++.||+||||||++.++.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 38899999999999999887664
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.04 E-value=0.0035 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 419
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.04 E-value=0.0039 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 043263 93 LIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
..|+|+|++|+|||||++.|.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999984
No 420
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.04 E-value=0.0024 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhc
Confidence 356999999999999999998754
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0035 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999998764
No 422
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0045 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456999999999999999999863
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.03 E-value=0.0042 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.|.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.03 E-value=0.0039 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999864
No 425
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.03 E-value=0.0032 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 043263 94 IIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
++.|+|++||||||++..|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999988754
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0039 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
-..|+|+|++|+|||||++.|.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 356999999999999999999864
No 427
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.03 E-value=0.0048 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 428
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0061 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCcc
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDSL 119 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~~ 119 (286)
|.|.||+|+|||++++++++.....
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999886533
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0051 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 430
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.01 E-value=0.0029 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 88 PPPNPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+++ |.++.|.|++||||||++..++..
T Consensus 104 l~~-G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IET-RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EET-TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCC-CcEEEEECCCCCCHhHHHHHHHHH
Confidence 444 999999999999999999998864
No 431
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0044 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999853
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0039 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 043263 94 IIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998754
No 433
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.00 E-value=0.0045 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 434
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.99 E-value=0.0042 Score=54.80 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..+|+|+|++|+||||+++.|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 435
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.99 E-value=0.0039 Score=48.93 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999864
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.99 E-value=0.0038 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 437
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.98 E-value=0.004 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|||||||++.|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356999999999999999999874
No 438
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0045 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=22.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCc
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
|.|.||+|+|||++++++++....
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTC
T ss_pred eEeeCCCCCcHHHHHHHHHhccCC
Confidence 899999999999999999987653
No 439
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.97 E-value=0.0051 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 567999999999999999999864
No 440
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.97 E-value=0.0043 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 441
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.96 E-value=0.0045 Score=56.54 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 87 CPPPNPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
-+++ |.++.|.|++|+||||++..++...
T Consensus 199 Gl~~-G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQR-SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCT-TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455 9999999999999999999998764
No 442
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0048 Score=48.70 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.94 E-value=0.0049 Score=48.75 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456999999999999999988764
No 444
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0055 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCc
Q 043263 95 IVISGPSGVGKDTVIKKLRESRDS 118 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~~ 118 (286)
|.|.||+|+|||++++++++....
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CceECCCCchHHHHHHHHHHHhCC
Confidence 999999999999999999987653
No 445
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.94 E-value=0.0046 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|||||||++.|.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 446
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.93 E-value=0.0049 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 447
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.93 E-value=0.0028 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 448
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.93 E-value=0.0055 Score=49.22 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567999999999999999999864
No 449
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.92 E-value=0.0037 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|++|+|||||++.|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999999753
No 450
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.92 E-value=0.0056 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.-+.|.||+|+||||+++.++..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3558999999999999999999876
No 451
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.91 E-value=0.0034 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999753
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.90 E-value=0.0047 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.89 E-value=0.0021 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 043263 95 IVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.|.||+|+||||+++.|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999998654
No 454
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.89 E-value=0.005 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
...+.|.||+|+||||+++.++....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46699999999999999999998654
No 455
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.87 E-value=0.004 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999764
No 456
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.87 E-value=0.0057 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
..++++|.+|+||||+++.|.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 479999999999999999999754
No 457
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.84 E-value=0.0059 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+|.++.++|+.|+||||++-.++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999876665443
No 458
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.83 E-value=0.0046 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|||||||++.|.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 346999999999999999999875
No 459
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.83 E-value=0.48 Score=40.53 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF 121 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~ 121 (286)
.+.+|++-|.-||||+|.++.|...+..-++
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~ 115 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSA 115 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCC
Confidence 4789999999999999999999988764333
No 460
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.82 E-value=0.0074 Score=54.79 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCcceee
Q 043263 94 IIVISGPSGVGKDTVIKKLRESRDSLHFV 122 (286)
Q Consensus 94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 122 (286)
-+.|.||+|+||||+++.|++.++...+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 38999999999999999999987643333
No 461
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.81 E-value=0.0037 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999764
No 462
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.80 E-value=0.0039 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999998654
No 463
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.80 E-value=0.0047 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
...|+|+|++|+|||||++.|.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 56799999999999999999864
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.80 E-value=0.0048 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 465
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0046 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 043263 95 IVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 95 i~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.|.||+|+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998864
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.79 E-value=0.0048 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.-+.|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999998764
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.79 E-value=0.0052 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 468
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.79 E-value=0.0049 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|.||+|+||||+++.+++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999998764
No 469
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.79 E-value=0.0052 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+.-++|+|++||||||+++.|...+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999998653
No 470
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0058 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.+.+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 471
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.78 E-value=0.0069 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..++++|.+|+||||+++.|.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 5679999999999999999998754
No 472
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.78 E-value=0.013 Score=56.99 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=28.9
Q ss_pred HhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 76 SLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 76 ~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.++..+......++. | |.|.||+|+|||++++.+++.+.
T Consensus 225 ~~p~~f~~~g~~~p~-G--ILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 225 RHPALFKAIGVKPPR-G--ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp HCCGGGTSCCCCCCC-E--EEEECCTTSCHHHHHHHHHTTTT
T ss_pred cCHHHHhhcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence 344345555444443 5 99999999999999999998765
No 473
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.77 E-value=0.0074 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 356999999999999999999875
No 474
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.77 E-value=0.0083 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.-+.|.||+|+|||++++.++....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34599999999999999999998754
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.76 E-value=0.0036 Score=56.83 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.+|+|+|++|+||||++..|+..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988653
No 476
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.75 E-value=0.0063 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567999999999999999999753
No 477
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.75 E-value=0.0054 Score=53.99 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|.||+|+||||+++.++..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999997754
No 478
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.73 E-value=0.0053 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRE 114 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~ 114 (286)
...|+|+|++|+|||||++.|.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35699999999999999999975
No 479
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0051 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLR 113 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~ 113 (286)
+|.++.|.|++|+||||++-.++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 49999999999999999997654
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.72 E-value=0.0048 Score=53.52 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+|.++.|.|++||||||++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999888753
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0057 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 482
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.72 E-value=0.0043 Score=56.67 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999999875
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.71 E-value=0.0032 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=10.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999998753
No 484
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.70 E-value=0.0045 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+..|+|+|.+|+|||||++.|.+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 566999999999999999999875
No 485
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.70 E-value=0.005 Score=55.93 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|.+|+|||||++.|.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999875
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.0051 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 487
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.69 E-value=0.0068 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+|+.++|.|++|+|||||++.|+..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhh
Confidence 5899999999999999999998765
No 488
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.68 E-value=0.007 Score=52.48 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 91 NPLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
+|.++.|.|++|+||||++..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999999999888754
No 489
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.67 E-value=0.01 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+.-+.|.||+|+||||+++.++..+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999998764
No 490
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.63 E-value=0.0074 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
+..+.|+||+|+||||+++.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999998764
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.62 E-value=0.0065 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 356999999999999999999764
No 492
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.61 E-value=0.008 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
.-.|+|+|.+|+|||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 567999999999999999998853
No 493
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.61 E-value=0.0065 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRESR 116 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~~ 116 (286)
...|+|+|.+|+|||||++.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999887754
No 494
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.60 E-value=0.0043 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHH-HHHHhccC
Q 043263 91 NPLIIVISGPSGVGKDTVI-KKLRESRD 117 (286)
Q Consensus 91 ~g~ii~l~G~sGsGKSTl~-~~L~~~~~ 117 (286)
+|.+|.|-|+-||||||++ ++|...+.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4889999999999999999 99998875
No 495
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.58 E-value=0.0083 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHH
Q 043263 92 PLIIVISGPSGVGKDTVIKKL 112 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L 112 (286)
+.++.++|++|||||+++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHH
Confidence 578999999999999998665
No 496
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.57 E-value=0.0091 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
.-+.|.||+|+||||+++.++..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3488999999999999999998764
No 497
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0076 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 043263 93 LIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
..|+|+|++|+|||||++.|.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.56 E-value=0.0069 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+|+|.+|+|||||++.|.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999875
No 499
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.55 E-value=0.0074 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263 93 LIIVISGPSGVGKDTVIKKLRESRD 117 (286)
Q Consensus 93 ~ii~l~G~sGsGKSTl~~~L~~~~~ 117 (286)
..+.|+||+|+||||+++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999987754
No 500
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.54 E-value=0.0071 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263 92 PLIIVISGPSGVGKDTVIKKLRES 115 (286)
Q Consensus 92 g~ii~l~G~sGsGKSTl~~~L~~~ 115 (286)
...|+++|.+|+|||||++.|.+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
Done!