RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043263
(286 letters)
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 228 bits (583), Expect = 2e-75
Identities = 79/208 (37%), Positives = 118/208 (56%), Gaps = 8/208 (3%)
Query: 76 SLGHAFDSNPVCPPPNP---LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132
S+G D+ P ++V+SGPS VGK TV++ LRE +LHF V+AT+R RP
Sbjct: 1 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60
Query: 133 GEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVLRVD 190
GEV+G DY F+ F Q++D+ ELLE+A ++G G + +R A G +++ VD
Sbjct: 61 GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120
Query: 191 IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250
+ GAR +++ + + AV VFLA S L RL+ R TE + + R+ TAR E+ +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179
Query: 251 DYVVVNAEGKLDSAVKLVESVIDAEKAK 278
D VVVN L+SA + S++
Sbjct: 180 DKVVVNRR--LESACAELVSLLVGTAPG 205
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 228 bits (584), Expect = 2e-75
Identities = 66/196 (33%), Positives = 117/196 (59%), Gaps = 4/196 (2%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
L+IV+SGPSGVGK TV + + + ++ + ++ T+R R GE +G DY+F S+E F Q
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQ 67
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
+ ++LEYA G+Y G P + + E +A G DI L +++QGA +R+ + + +F+FL
Sbjct: 68 AIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPE-GIFIFL 126
Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
L R++ R TE+ E + R+ TA++E++ + ++DY VVN + +AV+ ++
Sbjct: 127 TPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDV--VANAVQKIKG 184
Query: 271 VIDAEKAKVRQRSAVI 286
+++ E K +
Sbjct: 185 IVETEHLKTERVIHRY 200
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 227 bits (582), Expect = 3e-75
Identities = 76/196 (38%), Positives = 126/196 (64%), Gaps = 4/196 (2%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
L+IV+SGPSGVGK TV K++ E + + ++ T+R MR GEV+G DYFF +++ F
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA 65
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
++ ++ +EYA G+Y G P + +++ M +G+D+ L ++++GA+ +R+ D A+F+FL
Sbjct: 66 LIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFL 124
Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
A S L ERLV R TE+ E++ RI AR+EV+ + +DYVVVN E ++ A ++
Sbjct: 125 APPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDE--VELAKNRIQC 182
Query: 271 VIDAEKAKVRQRSAVI 286
+++AE K + A
Sbjct: 183 IVEAEHLKRERVEAKY 198
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 226 bits (580), Expect = 6e-75
Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 3/194 (1%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
+ +IS PSG GK ++++ L ++ + ++ T+RP RPG+ G DYFF+ + F MV
Sbjct: 8 NLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
+ LE+A +Y + G K + + G D++L +D QGAR +R + A+ +F+
Sbjct: 68 KEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPP-ALSIFILP 126
Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
S AL ERL++R+ ++ + R+A AREE+ H K FDY+VVN D AV+ + +I
Sbjct: 127 PSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDN--FDQAVQNLIHII 184
Query: 273 DAEKAKVRQRSAVI 286
AE+ + + +
Sbjct: 185 SAERLQRDVQEKKL 198
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 227 bits (580), Expect = 9e-75
Identities = 64/195 (32%), Positives = 115/195 (58%), Gaps = 3/195 (1%)
Query: 93 LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
+I+V+S PSG GK TV KL E ++++ V+ T+R R GE GKDY+FV +EEFL++
Sbjct: 28 VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
E++E+A V+G++ G+P+K + + + KG +L +D QGA ++ + V +F+
Sbjct: 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
S L RL R+ ++ E + R+ A E+ H + +DYV+VN + ++ + ++
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205
Query: 272 IDAEKAKVRQRSAVI 286
+ AE+ K ++ +
Sbjct: 206 LRAEQMKTCRQVGLR 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 222 bits (569), Expect = 2e-73
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
P +V+SGPSG GK T++KKL + S+ F V+ T+R RPGE +GKDY+FV++E +
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQR 63
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
+ + +E+A G+ G K+ +R A VL VD+QG R++++ +++F+
Sbjct: 64 DIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC-PIYIFV 122
Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVK---NFDYVVVNAEGKLDSAVKL 267
S L +RL R TE E L R+A AR +++ K FD V++N + LD A
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYAT 180
Query: 268 VESVIDAEKAKVRQ 281
++ + E K +
Sbjct: 181 LKQALSEEIKKAQG 194
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 220 bits (564), Expect = 7e-73
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 95 IVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
IVISGPSG GK T++KKL DS F V++T+R R GEVNGKDY FVS +EF M+
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
NE +E+A G+Y G +++ G +L +D+QG ++++ I +A F+F+A
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAEGKLDSAVKLVESV 271
S L +RL R TE E + R++ A+ E+ + + D V+VN + LD A K ++
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181
Query: 272 IDAEK 276
I AEK
Sbjct: 182 IFAEK 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 220 bits (564), Expect = 2e-72
Identities = 63/196 (32%), Positives = 118/196 (60%), Gaps = 5/196 (2%)
Query: 93 LIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
+ ++S PSG GK ++I+ L ++ V+ T+R RPGEV+G+ YFFV+ +EF +
Sbjct: 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 76
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
M+ ++ LE+A V+G+Y G ++ I + +A G D+ L +D QGA+ +R+ + A +F+
Sbjct: 77 MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH-ARSIFI 135
Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
S++ L RL R ++ E + R+A A E+ H +DY++VN + D+A+ +++
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKT 193
Query: 271 VIDAEKAKVRQRSAVI 286
+I AE+ ++ ++
Sbjct: 194 IIRAERLRMSRQKQRH 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 216 bits (553), Expect = 6e-71
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
+V+ GPSGVGK T+IKK+ F ++ T+R R E NG DY+FV K++F +
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI-LGDSAVFVF 209
+ + + LE+ ++ G K + + +G + ++I G + L+ +++F
Sbjct: 72 KLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIF 131
Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAEGKLDSAVKL 267
+ S L+ RL R TE EE+ R+ E+ F+Y +VN + L
Sbjct: 132 VKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDD--LARTYAE 189
Query: 268 VESVIDAEKAKVR 280
+ + ++R
Sbjct: 190 LREYLLGSYPQLR 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 214 bits (548), Expect = 5e-70
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 91 NPLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
N +VI GPSGVGK T+IKKL + +F V+ T+R R E G DY+F+ K F
Sbjct: 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFE 81
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRR-ILGDSAVFV 208
+ + LEY ++ G K + + + + ++I G + L++ +A+++
Sbjct: 82 DKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYI 141
Query: 209 FLAAESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFDYVVVNAEGKLDSAVK 266
F+ S L+ RL+ R TEN+E++ R+ E+ ++ NF+ ++N + L +
Sbjct: 142 FIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD--LTLTYQ 199
Query: 267 LVESVIDAEKAKVRQRS 283
+++ + + +
Sbjct: 200 QLKNYLLNSYIHLNNHT 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 185 bits (472), Expect = 8e-59
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 14/199 (7%)
Query: 79 HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNG 137
H +V+ G SGVG+ + L + + V T+RP R E +G
Sbjct: 6 HHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG 65
Query: 138 KDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTL 197
K+Y F+S EE + + NE LE+ G+ G + + + + +L ++ Q + +
Sbjct: 66 KEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIV 125
Query: 198 RRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA 257
R VF+A + E L + + + + Q+ FD +VN
Sbjct: 126 RTAELS-PFIVFIAPTDQGTQTEALQQLQKD----------SEAIRSQYAHYFDLSLVNN 174
Query: 258 EGKLDSAVKLVESVIDAEK 276
+D +K ++ D
Sbjct: 175 G--VDETLKKLQEAFDQAC 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 183 bits (468), Expect = 2e-58
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 95 IVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
+V+ G GVG+ + L D + + T+RP + E NGK+Y+FVS ++ +Q +
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDIS 67
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
NE LEY G + IR+ +G +L V+ Q + LR + VF+AA
Sbjct: 68 NNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRT-AEFAPFVVFIAAP 126
Query: 214 SEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
+ + E L + + + FD ++N E +D ++ +E +
Sbjct: 127 T--------ITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRHLEEAV 176
Query: 273 D 273
+
Sbjct: 177 E 177
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 159 bits (404), Expect = 2e-47
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 10/193 (5%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS-K 145
++I GP KD + L E D V T+RP R EV+G+DY FVS +
Sbjct: 96 SINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 152
Query: 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSA 205
E+ + + + +E + G +RE KG +L V + L+
Sbjct: 153 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLY-P 211
Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
V VF+ +S +++E E ++ R +E F VV ++
Sbjct: 212 VAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGE--YFTGVVQGDT--IEEIY 267
Query: 266 KLVESVIDAEKAK 278
V+S+I ++
Sbjct: 268 SKVKSMIWSQSGP 280
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 157 bits (399), Expect = 8e-47
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 12/194 (6%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS-K 145
I+I GP+ KD L E D V T+RP R E++G+DY FVS +
Sbjct: 101 EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSR 157
Query: 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSA 205
E+ + + ++ +E G + +RE +G +L V R L+
Sbjct: 158 EKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA-AHLHP 216
Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATA-REEVQHVKNFDYVVVNAEGKLDSA 264
+ +F+ S ++E K E+ A + E + + F +V +
Sbjct: 217 IAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEEI 271
Query: 265 VKLVESVIDAEKAK 278
V+ VI+
Sbjct: 272 YHKVKRVIEDLSGP 285
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 102 bits (254), Expect = 2e-24
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 14/192 (7%)
Query: 87 CPPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS- 144
P+II+ G KD L E D V T+RP R E++G+DY FVS
Sbjct: 528 VHYARPIIIL-----GPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 582
Query: 145 KEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDS 204
+E+ + + ++ +E G + +RE +G +L V R L+
Sbjct: 583 REKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA-AHLH 641
Query: 205 AVFVFLAAESEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDS 263
+ +F+ S ++E K E+ A + E + + F +V +
Sbjct: 642 PIAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEE 696
Query: 264 AVKLVESVIDAE 275
V+ VI+
Sbjct: 697 IYHKVKRVIEDL 708
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 67.2 bits (163), Expect = 5e-13
Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 20/230 (8%)
Query: 53 NIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVG---KDTVI 109
N+R+ H Q A K+ + P P+ +V+ GPS G D +
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQ 162
Query: 110 KKLRESRDSLHFVVT-ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168
K L F + +R + +K L K+ ++E +
Sbjct: 163 KALF-DFLKHRFEGRISITRVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLA 213
Query: 169 --GIPKKQIREYMAKGYDIVLRVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVER 225
++I E +VL D I L + + + V++ S L + R
Sbjct: 214 EVQSEIERIFELARTLQLVVLDADTINHPAQLSK-TSLAPIVVYVKISSPKVLQRLIKSR 272
Query: 226 KTENREELLVRIATAREEVQ-HVKNFDYVVVNAEGKLDSAVKLVESVIDA 274
+ L V++ A + Q + FD ++ + L+ A + + ++A
Sbjct: 273 GKSQAKHLNVQMVAADKLAQCPPELFDVILDENQ--LEDACEHLADYLEA 320
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 2e-10
Identities = 57/355 (16%), Positives = 117/355 (32%), Gaps = 116/355 (32%)
Query: 4 RLSTSFSLYII--SKPKS---PF---ALQRN------PIKSEKQ-----YQRFHYSLS-L 43
+S + L+ SK + F L+ N PIK+E++ + + L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 44 TPTPLVFSSNIRMNHTQAAPVNKI-ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSG 102
VF+ + N ++ P K+ + L L P ++I G G
Sbjct: 120 YNDNQVFA---KYNVSRLQPYLKLRQALLELR---------------PAK-NVLIDGVLG 160
Query: 103 VGKDT-VIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS------KEEFLQM---- 151
GK + + ++ F+++ E L+M
Sbjct: 161 SGKTWVALDVCLSYKVQCKM----------DFKI-----FWLNLKNCNSPETVLEMLQKL 205
Query: 152 ---VDKN--ELLEYALVYGDYKGIPKKQIREYMA-KGYD---IVLRVDIQGARTLR---- 198
+D N +++ + ++R + K Y+ +VL ++Q A+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNL 264
Query: 199 --RIL---GDSAVFVFLAA--ESEMALVER---LVERKTEN-------------REE--- 232
+IL V FL+A + ++L L + ++ E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 233 ---LLVRI--ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
+ I + R+ + N+ +V + KL + ++ S+ E A+ R+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIES--SLNVLEPAEYRKM 374
Score = 38.3 bits (88), Expect = 0.002
Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 78/282 (27%)
Query: 52 SNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNP--VCPPPNPLIIVISGPS-GVGKDTV 108
++I ++H + E+ L L P V NP + I S G T
Sbjct: 287 THISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATW 344
Query: 109 IKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-----F-----------------VSKE 146
+ D L ++ ++ + P E + F F V K
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDI--VLRVDIQGARTL-RRILG- 202
+ + +V N+L +Y+LV +KQ +E I L+V ++ L R I+
Sbjct: 403 DVMVVV--NKLHKYSLV--------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 203 -----------------DSAVFVFLA---AESEMA----LVERL------VERKTENREE 232
D + + E L + +E+K +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 233 LLVRIATAREEVQHVKNF-DYVVVNAEGKLDSAVKLVESVID 273
+ +Q +K + Y+ N + K + +LV +++D
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN-DPKYE---RLVNAILD 550
Score = 37.1 bits (85), Expect = 0.006
Identities = 20/173 (11%), Positives = 59/173 (34%), Gaps = 42/173 (24%)
Query: 138 KDYFFVSKEEFLQMVDKNELLEY---ALVYGDYKGI---PKKQIREYMAKGYDIVLRVDI 191
KD V ++ F+ D ++ + L + I + +L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLS--- 73
Query: 192 QGARTLRRILGDS--AVFVFLAAE-----SEMALVERLVERKTE--------------NR 230
+ +++ + + + FL + + +++ R+ + + +R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 231 EELLVRIATAREEVQHVKNFDYVVVN---AEGKLDSAVKLVESVIDAEKAKVR 280
+ +++ A E++ K V+++ GK + + V + K + +
Sbjct: 134 LQPYLKLRQALLELRPAK---NVLIDGVLGSGK--TW--VALDVCLSYKVQCK 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 47.2 bits (112), Expect = 1e-06
Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 28/193 (14%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
+ +I+GP+GVGK T K+L D+ ++ M V G +E L +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM----VVGGYRPPWESDELLALTW 59
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL------RVDIQGARTLRRILGDSAVF 207
KN ++ D+VL A+T++ + D +
Sbjct: 60 KNIT---------------DLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104
Query: 208 VFLAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVK 266
+ + L+ R R K E E + + E + Y + + +
Sbjct: 105 FIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDE--RYFYNTSHLQPTNLND 162
Query: 267 LVESVIDAEKAKV 279
+V+++ +
Sbjct: 163 IVKNLKTNPRFIF 175
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 47.6 bits (112), Expect = 2e-06
Identities = 16/130 (12%), Positives = 43/130 (33%), Gaps = 1/130 (0%)
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
+ K+E + I I++ + + +L V L + VF
Sbjct: 249 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNY-AQWYPIVVF 307
Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269
L +S+ + + E+R+ + + ++ + +N D ++
Sbjct: 308 LNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALK 367
Query: 270 SVIDAEKAKV 279
I ++ ++
Sbjct: 368 EAIQQQQNQL 377
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 46.4 bits (109), Expect = 4e-06
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 1/115 (0%)
Query: 165 GDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE 224
K I +R K +L V L + + VF ES AL
Sbjct: 181 SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYV-QYYPIVVFFIPESRPALKALRQW 239
Query: 225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV 279
+R A A++ +H + + G D+ + ++++I ++ +
Sbjct: 240 LAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRP 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 45.1 bits (107), Expect = 5e-06
Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 36/193 (18%)
Query: 94 IIVISGPSGVGKDTVIKKLRESR-------DSLHFVVTATSRPMRPGEVNGKDYFFVSKE 146
+I++ GP K TV KL + S + + F E
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE-----------LAKSGNEKLF----E 47
Query: 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAV 206
F ++ D++ ++ VY + K K Y I+ + R + + A
Sbjct: 48 HFNKLADEDNVIIDRFVYSNLVYAKK-------FKDYSILTE---RQLRFIEDKIKAKAK 97
Query: 207 FVFLAAESEMALVERLVERKTEN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
V+L A+ + + +RL R E + + I EV + S+
Sbjct: 98 VVYLHADPSV-IKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQW--SSD 154
Query: 266 KLVESVIDAEKAK 278
++ + +I + +
Sbjct: 155 EIAKDIIFLVELE 167
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 45.6 bits (107), Expect = 8e-06
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 3/131 (2%)
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
+ K+E + I I++ + + +L V L + VF
Sbjct: 257 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNY-AQWYPIVVF 315
Query: 210 LAAESEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDSAVKLV 268
L +S+ + + E+R+ + + + F + D +
Sbjct: 316 LNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINL-NSMNDGWYGAL 374
Query: 269 ESVIDAEKAKV 279
+ I ++ ++
Sbjct: 375 KEAIQQQQNQL 385
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 42.3 bits (99), Expect = 5e-05
Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 38/214 (17%)
Query: 88 PPPNP--LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145
P L+++ SG GKD V + L+ + V S P+ K
Sbjct: 5 PLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL--------------K 50
Query: 146 EEFLQM--VDKNELLEYALVYGDYKGIPKKQ----IREYMAKGYDIVLRVDIQGARTLRR 199
E++ Q ++ LL+ YK +K E R ++G
Sbjct: 51 EQYAQEHGLNFQRLLD----TSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIW 106
Query: 200 ILGD----SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ------HVKN 249
++ D S + F A + R V ++R++ ++ + + +
Sbjct: 107 LVSDTRRVSDIQWFREAYGAVTQTVR-VVALEQSRQQRGWVFTPGVDDAESECGLDNFGD 165
Query: 250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRS 283
FD+V+ N G + +E++I+ +++++
Sbjct: 166 FDWVIEN-HGVEQRLEEQLENLIEFIRSRLKLHH 198
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 42.2 bits (99), Expect = 6e-05
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 25/163 (15%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
P +I+++G GK T+ + L L + + KE
Sbjct: 5 PALIIVTGHPATGKTTLSQALAT---GLRLPL------LSKDAF---------KEVMFDG 46
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL------RVDIQGARTLRRILGDSA 205
+ ++ V + + G +++ +D + + L I +
Sbjct: 47 LGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTP 106
Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248
+ + A ++ LVER++ R + + +++ V+
Sbjct: 107 IQIRCVASGDV-LVERILSRIAQGARHPGHCDDRSPADLELVR 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 43/155 (27%)
Query: 139 DYFFVSKEEF--LQMVDKNELLEYALVYGDYKGIPKKQIRE-YMAKGYDIVLRVDIQGAR 195
D F F L +V N + + +G KG K+IRE Y A ++ ++ ++ +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPV-NLTIHFGGEKG---KRIRENYSAMIFETIVDGKLKTEK 1705
Query: 196 TLRRILGDSAVFVFLAAESEMALVERLVERKTEN-----REELLVRIATARE-EVQHVKN 249
+ I S + F + + ++ T+ L+ A + + + +
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSA--------TQFTQPAL---TLMEKAAFEDLKSKGLIP 1754
Query: 250 FDYVVVNAEG----------------KLDSAVKLV 268
D A G ++S V++V
Sbjct: 1755 ADATF--A-GHSLGEYAALASLADVMSIESLVEVV 1786
Score = 38.9 bits (90), Expect = 0.002
Identities = 57/338 (16%), Positives = 101/338 (29%), Gaps = 120/338 (35%)
Query: 2 FRRLST-SFSLYIISKPKSPFALQRNPIK--SEKQ--YQRFHYSLSLTPTPLVFSSNIRM 56
FR + + L I F Q N E + YQ +H + L+ S +
Sbjct: 146 FRAVGEGNAQLVAI------FGGQGNTDDYFEELRDLYQTYHVLVG----DLIKFSAETL 195
Query: 57 NHTQAAPVNKIELLRSLEASLGHAFD-----SNPVCPPPNP-LIIV-ISGPSGVGKDTVI 109
+ + E + NP P L+ + IS P +G +
Sbjct: 196 SELIRTTL-------DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIG----V 243
Query: 110 KKLRESRDSLHFVVTATSRPMRPGEVNGKDYF--------------FVSK----EEFLQM 151
+L H+VVTA PGE+ + Y +++ E F
Sbjct: 244 IQL------AHYVVTAKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGA---RTLR-RILGDSAVF 207
V K + L + I +R A +L IL DS +
Sbjct: 296 VRK--AITV-LFF--------------------IGVRC--YEAYPNTSLPPSILEDS-LE 329
Query: 208 VFLAAESEMALVERLVERKTENREELLVRIATAREEV---QHV--------KNFDYVVVN 256
S M + L +E++ + + + V KN VV
Sbjct: 330 NNEGVPSPMLSISNL------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVS- 380
Query: 257 AEG------KLDSAVKLVESVIDAEKAKV--RQRSAVI 286
G L+ ++ ++ +++++ +R
Sbjct: 381 --GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 32.3 bits (73), Expect = 0.21
Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 64/191 (33%)
Query: 1 MFRRLSTSFSLYIISKPKSPFALQRN--P------------IKSEKQYQR---F--H--- 38
+F+ ++ + Y K + + P +KS+ F H
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 39 -YS--------LSLTPT-PLVF----------------SSNIRM---NHTQAAPVNKIEL 69
Y+ +S+ +VF SN M N + A E
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 70 LRSLEASLGHAFDSNPVCPPPN----PLIIVISG-PSGVGKDTVIKKLRESR----DSLH 120
L+ + +G + + N V +G + DTV L + D +
Sbjct: 1826 LQYVVERVGKR--TGWLVEIVNYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIE 1881
Query: 121 FVVTATSRPMR 131
+ + +
Sbjct: 1882 LQKSLSLEEVE 1892
Score = 29.2 bits (65), Expect = 1.7
Identities = 48/279 (17%), Positives = 88/279 (31%), Gaps = 98/279 (35%)
Query: 35 QRFHYSLSLTPTPLVFSSNIRMNHTQAAP---VNKIELLRSLEASLGHAFDSNPVCPPPN 91
+ + SL P+ L ++ N +P ++ + + E + +N P
Sbjct: 311 YEAYPNTSLPPSIL--EDSLENNEGVPSPMLSISNL----TQEQVQDYVNKTNSHLPAGK 364
Query: 92 PLII---------VISGP--SGVGKDTVIKKLR------ESRDSLHFVVTATSRPMRPGE 134
+ I V+SGP S G + ++K + +SR + + R ++
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR------IPFSERKLK--- 415
Query: 135 VNGKDYFFVSKEEFLQ---------MVDKNELLEYALVYGDYKGIPKKQIRE--Y-MAKG 182
F + FL +V ++L+ LV + K I+ Y G
Sbjct: 416 -------FSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDG 465
Query: 183 YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENR---EELLVRIAT 239
D+ R+L S + ER+V+ E AT
Sbjct: 466 SDL-------------RVLSGS-------------ISERIVDCIIRLPVKWETTTQFKAT 499
Query: 240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVE----SVIDA 274
H+ +F + G L + + VI A
Sbjct: 500 ------HILDFGPGGASGLGVLTH--RNKDGTGVRVIVA 530
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 39.5 bits (92), Expect = 4e-04
Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 35/195 (17%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
+I+I+G G GK K L+E V S +R K ++
Sbjct: 2 KVILITGMPGSGKSEFAKLLKE----RGAKVIVMSDVVR-------------KRYSIEAK 44
Query: 153 DKNELLEYALVYGDYKG---IPKKQIREYMAKGYDIVLRVDIQG---ARTLRRILGDSAV 206
L+++A + G + + + E +D+V+ ++ +R+LGDS
Sbjct: 45 PGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVY 104
Query: 207 FVFLAAESEMALVERLVERK----TENREELLVRIATAREEVQHV----KNFDYVVVNAE 258
V + + ++ +R++ER ++ EL+ R E + DY++ N +
Sbjct: 105 IVAVHSPPKI-RYKRMIERLRSDDSKEISELIRRD--REELKLGIGEVIAMADYIITN-D 160
Query: 259 GKLDSAVKLVESVID 273
+ + E V D
Sbjct: 161 SNYEEFKRRCEEVTD 175
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 39.2 bits (91), Expect = 4e-04
Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 34/194 (17%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKL-----RESRDSLHFVVTATSRPMRPGEVNGKDYFF 142
+ I V+ G SG GK V ++ D M GE
Sbjct: 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP----LND 59
Query: 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL--RVDIQGARTLRRI 200
++ +LQ + ++ + R L R
Sbjct: 60 DDRKPWLQAL-------------------NDAAFAMQRTNKVSLIVCSALKKHYRDLLRE 100
Query: 201 LGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260
+ F++L + ++ RL RK + ++ + D +VV+ +
Sbjct: 101 GNPNLSFIYLKGDFDVIE-SRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQP 159
Query: 261 LDSAVKLVESVIDA 274
L+ +V S I+
Sbjct: 160 LE---GVVASTIEV 170
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 38.5 bits (89), Expect = 9e-04
Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
I+++SG G GK T+ + L + + +G+ + +L
Sbjct: 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD--LWGYIKHGRI------DPWL 58
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI--LGDSAVF 207
+ + + Y +GY ++L + L L +
Sbjct: 59 PQSHQQNRMIMQIAA--------DVAGRYAKEGYFVILD-GVVRPDWLPAFTALARPLHY 109
Query: 208 VFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKL 267
+ L + +ER ++R + + +A + + F++ V+ GK +
Sbjct: 110 IVLRTTAA-EAIERCLDR-GGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGK--DTDQA 165
Query: 268 VESVIDA 274
++S I+A
Sbjct: 166 LQSAINA 172
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 37.1 bits (85), Expect = 0.002
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 17/139 (12%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDS--LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
+I+++G S GK +++ L+ L F V + M + + + + +
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRIL-----GDSAV 206
+ LE A + + G I++ G + +
Sbjct: 65 GPEFRALEGAW---------AEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVL 115
Query: 207 FVFLAAESEMALVERLVER 225
+V + + R R
Sbjct: 116 WVGVRCDGA-VAEGRETAR 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 37.4 bits (86), Expect = 0.002
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 36/203 (17%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF-VSKEEFLQMV 152
I +++G GVGK TV+ K++E D+ +N D+ + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK---------IINYGDFMLATALKLGYAKD 53
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSA------- 205
+ K I E G + L +D +R G
Sbjct: 54 RDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFID--THAVIRTPSGYLPGLPSYVI 111
Query: 206 ------VFVFLAAESEMALVERLVERKTENR----------EELLVRIATAREEVQHVKN 249
V L A+ ++ L R T NR E + A +
Sbjct: 112 TEINPSVIFLLEADPKIIL-SRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGS 170
Query: 250 FDYVVVNAEGKLDSAVKLVESVI 272
V+VN EG A + +
Sbjct: 171 TVKVIVNVEGDPSIAANEIIRSM 193
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 36.5 bits (84), Expect = 0.004
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 89 PPNPLIIVISGPSGVGKDTVIKKLRE 114
P II I+GP GVGK L E
Sbjct: 2 PMRSPIIWINGPFGVGKTHTAHTLHE 27
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 36.6 bits (84), Expect = 0.005
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 32/196 (16%)
Query: 83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF 142
S P IV+ G SG GK +V + + E F+ P ++
Sbjct: 9 SEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAE-ACGYPFIEGDALHP-------PENIRK 60
Query: 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGART---LRR 199
+S+ L D+ L I E +A +V+ LR
Sbjct: 61 MSEGIPLTDDDRWPWLA--------------AIGERLASREPVVVSCSALKRSYRDKLRE 106
Query: 200 ILGDSAVFVFLAAESEMALVERLVERKTE-NREELLVRIATAREEVQHVKNFDYVVVNAE 258
FVFL + L ER+ R LL E+ + V V+
Sbjct: 107 SAPGGLAFVFLHGSESV-LAERMHHRTGHFMPSSLLQTQLETLEDPRG--EVRTVAVDVA 163
Query: 259 GKLDSAVKLVESVIDA 274
L ++V +
Sbjct: 164 QPLA---EIVREALAG 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 36.2 bits (83), Expect = 0.006
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 36/203 (17%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
P + I+I+G G GK ++ + + + D +
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAA-ELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 66
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD---IVLRVDIQGARTLRRILGDSAV 206
+ D+ ++ + E + + +VL
Sbjct: 67 KDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTS---------------- 110
Query: 207 FVFLAAESEMALVERLVERK------TENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260
L ERL +R+ EN E + I EE + D V+V
Sbjct: 111 --------TEVLFERLTKRQYSEAKRAENMEAEIQCICE--EEARDAYEDDIVLVRENDT 160
Query: 261 LDSAVKLVESVIDAEKAKVRQRS 283
L+ VE + + + +R
Sbjct: 161 LEQMAATVEEIRERVEVLKVERG 183
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 35.8 bits (82), Expect = 0.008
Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 40/203 (19%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEF--LQM 151
++V++G GVG T + ++ S EV ++ +++ +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64
Query: 152 VDKNELLEYAL----------------------VYGDYKGIPKKQIREYMAKGYDIVLRV 189
+ + + A G G+P + E D+++ V
Sbjct: 65 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELN---PDLIIVV 121
Query: 190 DIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249
+ G L R + D R ++ + + + A
Sbjct: 122 ETTGDEILMRRMSDET-------------RVRDLDTASTIEQHQFMNRCAAMSYGVLTGA 168
Query: 250 FDYVVVNAEGKLDSAVKLVESVI 272
+V N G LD AV+ + +V+
Sbjct: 169 TVKIVQNRNGLLDQAVEELTNVL 191
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 35.4 bits (81), Expect = 0.009
Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 41/199 (20%)
Query: 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVT--ATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
I+++G GVGK T+ K+L + V A + G D + ++ + +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 73
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
D +V ++ + VLR D
Sbjct: 74 DNQMREGGVIVDYHGCDFFPERWFHIV-----FVLRTDTN-------------------- 108
Query: 213 ESEMALVERLVERK------TENRE-ELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
L ERL R T+N + E+ + EE + V K +
Sbjct: 109 ----VLYERLETRGYNEKKLTDNIQCEIFQVLY---EEATASYKEEIVHQLPSNKPEELE 161
Query: 266 KLVESVIDAEKAKVRQRSA 284
V+ ++ + ++ ++
Sbjct: 162 NNVDQILKWIEQWIKDHNS 180
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 35.8 bits (82), Expect = 0.010
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFV 122
P ++I G G GK T + + ++ + +
Sbjct: 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 50
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 35.2 bits (81), Expect = 0.011
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 76 SLGHAFDSNPVCPPPN-PLIIVISGPSGVGKDTVIKKLRES 115
S H S+ + P + II ISG + GK T+ K L++
Sbjct: 4 SHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 35.7 bits (83), Expect = 0.012
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
P+II+I+G G GK +K L E D V + RP
Sbjct: 43 PVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRP 80
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 35.2 bits (81), Expect = 0.014
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRE 114
P +I +SG + GK +V K+ +
Sbjct: 22 PFLIGVSGGTASGKSSVCAKIVQ 44
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 34.7 bits (79), Expect = 0.018
Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 24/196 (12%)
Query: 89 PPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEF 148
+V+ G SG GK T+ + + + A + E + +
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVAD----ETGLEFAEADAFHSPENIAT----MQRGIP 77
Query: 149 LQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL--RVDIQGARTLRRILGDSAV 206
L D+ L + + G ++ + R + R S
Sbjct: 78 LTDEDRWPWLRSL----------AEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVD 127
Query: 207 FVFLAAESEMALVERLVERKTE-NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
F+ L +E+ + R+ +R+ LL E ++ + +V++ + +
Sbjct: 128 FLHLDGPAEV-IKGRMSKREGHFMPASLLQSQLATLEALEPDE--SGIVLDLRQPPEQLI 184
Query: 266 KLVESVIDAEKAKVRQ 281
+ + +D A
Sbjct: 185 ERALTWLDIAPAVATH 200
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 34.8 bits (80), Expect = 0.020
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 91 NPLIIVISGPSGVGKDTVIKKLRE 114
P +I +SG + GK TV +K+ E
Sbjct: 24 RPFLIGVSGGTASGKSTVCEKIME 47
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 34.5 bits (80), Expect = 0.023
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRES 115
P P +I I+G + GK T+ + L +
Sbjct: 4 PKPFVIGIAGGTASGKTTLAQALART 29
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 33.7 bits (78), Expect = 0.037
Identities = 44/223 (19%), Positives = 73/223 (32%), Gaps = 60/223 (26%)
Query: 83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF---------VVTATS------ 127
S P P +I + G G GK T +KL + +H A S
Sbjct: 6 SQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELI 65
Query: 128 -RPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIV 186
++ G+ V +E L ++ + I + +
Sbjct: 66 KNCIKEGQ-------IVPQEITLALL-------------------RNAISDNVKANKHKF 99
Query: 187 L-----RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVER-KTENR-----EELLV 235
L R Q A + R + +S +F + ++ERL+ER KT R E +
Sbjct: 100 LIDGFPRKMDQ-AISFERDIVESKFILFFDCPED-IMLERLLERGKTSGRSDDNIESIKK 157
Query: 236 RIATAREEVQHVKNF-----DYVVVNAEGKLDSAVKLVESVID 273
R T +E V + V V + ++ K V+ I
Sbjct: 158 RFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 33.5 bits (77), Expect = 0.044
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKLRES 115
L++ I G S GK T+ +L ++
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 33.2 bits (75), Expect = 0.062
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFV 122
P + I G VGK T +K L ++ H
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 32
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 33.3 bits (75), Expect = 0.062
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFV 122
I I G GK T + L++ + V
Sbjct: 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 32.8 bits (74), Expect = 0.077
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 14/159 (8%)
Query: 91 NPLIIVISGPSGVGKDTVIKKLRESR-----DSLHFVVTATSRPMRPGEVNGKD------ 139
LII I G G V KKL E D + + + D
Sbjct: 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNN 72
Query: 140 -YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
+ + + + K + + + +RE + G +
Sbjct: 73 LLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESE-PCIFVGRAAGYVLDQ 131
Query: 199 RILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI 237
+ + +F+ + V+R++E + E RI
Sbjct: 132 DEDIERLIRIFVYTDKVKK-VQRVMEVDCIDEERAKRRI 169
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 33.2 bits (75), Expect = 0.084
Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 25/149 (16%)
Query: 64 VNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVV 123
+ + LR+L L ++++ G G GK I + L ++
Sbjct: 138 YSDMAKLRTLRRLLKDGEPHVSSAK-----VVLVDGVPGCGKTKEILSRVNFEEDL--IL 190
Query: 124 TATS--------RPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQI 175
R G + + + FL K ++ ++ D
Sbjct: 191 VPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEG------- 243
Query: 176 REYMAKGYDIVLRVDIQGARTLRRILGDS 204
M + V++ + GD+
Sbjct: 244 --LMLHTGCVNFLVEMSLCDIA-YVYGDT 269
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.096
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 70 LRSLEASLG-HAFDSNP 85
L+ L+ASL +A DS P
Sbjct: 22 LKKLQASLKLYADDSAP 38
Score = 31.8 bits (71), Expect = 0.14
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 3 RRLSTSFSLYIISKPKS-PFALQRNPIKS 30
++L S LY S P AL IK+
Sbjct: 23 KKLQASLKLY---ADDSAP-ALA---IKA 44
Score = 28.4 bits (62), Expect = 1.6
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 18/42 (42%)
Query: 243 EVQHVKNFDYVVVNAEGKLDSAVKLVESVID-----AEKAKV 279
E Q +K KL +++KL D A KA +
Sbjct: 18 EKQALK-----------KLQASLKLYAD--DSAPALAIKATM 46
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 32.1 bits (74), Expect = 0.12
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 41/142 (28%)
Query: 173 KQIREYMAKGY----DIVL-----RVDIQGA---------RT------LRRILGD----S 204
+ I + G + + +D R + D
Sbjct: 53 EMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTK 112
Query: 205 AVFVFLAAESEMALVERLVER-KTENR-----EELLVRIATAREEVQHVKNF-----DYV 253
V F E M +RL++R ++ R E + R T + + V +
Sbjct: 113 FVLFFDCPEEVM--TQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVK 170
Query: 254 VVNAEGKLDSAVKLVESVIDAE 275
++ A ++ VE++ +
Sbjct: 171 IIPANRDVNEVYNDVENLFKSM 192
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.9 bits (72), Expect = 0.18
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRE 114
II ++G SG G TV +
Sbjct: 5 HPIISVTGSSGAGTSTVKHTFDQ 27
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.5 bits (71), Expect = 0.20
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 27/170 (15%)
Query: 95 IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL---- 149
I+I+G GVGK T++KK+ T R + G ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDI------------QGARTL 197
K + Y + ++ + + + +V I + +
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 198 RRILGDSAVFVF--LAAESEMALVERLVERK--------TENREELLVRI 237
R+I+ D V V + LV+ + ENR+ +L I
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.21
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 89 PPNPLIIVISGPSGVGKDTVIKKLRE 114
P ++ +SG G GK T+ L
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 31.5 bits (71), Expect = 0.22
Identities = 26/199 (13%), Positives = 58/199 (29%), Gaps = 24/199 (12%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESR-----DSLHFVVTATSRPMRPGEVNGKDYFFVSKEE 147
+II I G G V KKL E A + D ++
Sbjct: 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAF 66
Query: 148 FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVF 207
+ + IR+ + + + V L + +
Sbjct: 67 IPVPAGGTTISLEQDIAIRQ----FNFIRKKANEEKESFVIVGRCAEEILSDN--PNMIS 120
Query: 208 VFLAAESEMALVERLVERKTENREELLVRIATA-REEVQHVK-----------NFDYVVV 255
F+ + + +R++ER+ + + L + + + +D +
Sbjct: 121 AFILGDKD-TKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIK 179
Query: 256 NAEGKLDSAVKLVESVIDA 274
+ +D+A ++ ID+
Sbjct: 180 IGKVDVDTATDMIIKYIDS 198
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.8 bits (69), Expect = 0.31
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 95 IVISGPSGVGKDTVIKKLRESRDSLHFVV 123
+ ++GP GVGK T+I K E S V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 31.2 bits (70), Expect = 0.33
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
II+ G G GK T ++ + + R +Y + K+E +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 152 VDKNELLEYALVYGD 166
+ + + L GD
Sbjct: 62 GMQFDTAKSILYGGD 76
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.41
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 210 LAAESEMALVE-------RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262
L E E ++ + RL E ++ A+++++ + +++
Sbjct: 80 LTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE---EW-N--QRQSEQVE 132
Query: 263 SAVKLVESVIDAEKAKVRQRSA 284
K + A+KA +Q A
Sbjct: 133 ---KNKINNRIADKAFYQQPDA 151
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 30.3 bits (69), Expect = 0.55
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
+IV+ G GK T +KL E+ + P
Sbjct: 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 30.3 bits (67), Expect = 0.57
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDSLHF 121
+I +SG GKDT + + ++ +
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.5 bits (68), Expect = 0.58
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 70 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRE 114
L+ L+ LG+ NP P + G G GK ++KL E
Sbjct: 26 LQQLDILLGNWLR-NPGHHYPR---ATLLGRPGTGKTVTLRKLWE 66
>3fge_A Putative flavin reductase with split barrel domai; YP_750721.1;
1.74A {Shewanella frigidimarina ncimb 400}
Length = 203
Score = 29.9 bits (68), Expect = 0.59
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 84 NPVCPPPNPLIIVISGPSGVGKDTV--IKKLRESRDSLHFVVTATSRPMR 131
+ P PL+ +I P V + T I + + + ++ +
Sbjct: 51 IHLGANP-PLMGMIIRPHSVPRHTFENIMQTGL------YTINHVNQSIY 93
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.2 bits (69), Expect = 0.59
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
I +++GPSGVGK +++ +L
Sbjct: 167 ICILAGPSGVGKSSILSRL 185
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.67
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 92 PLIIVISGPSGVGKDTVIKKL 112
LI+ I G S GK T+I ++
Sbjct: 2 SLILSIVGTSDSGKTTLITRM 22
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.2 bits (69), Expect = 0.69
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
I ++G SGVGK +++ +
Sbjct: 171 ISTMAGLSGVGKSSLLNAI 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.2 bits (69), Expect = 0.69
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
V +G SGVGK +++ +
Sbjct: 175 TTVFAGQSGVGKSSLLNAI 193
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 29.7 bits (68), Expect = 0.89
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 91 NPLIIVISGPSGVGKDTVIKKL 112
L++ + GP+G GK +V + L
Sbjct: 8 GSLVVAVDGPAGTGKSSVSRGL 29
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.6 bits (66), Expect = 0.91
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 88 PPPNPLIIVISGPSGVGKDTVI-----KKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF 142
P + L IV+ G +G GK +K+ S + + R +
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE--KRSSSWKETELVV 82
Query: 143 V 143
V
Sbjct: 83 V 83
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.6 bits (66), Expect = 0.99
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHF 121
+ I I G G GK T+ ++ + F
Sbjct: 1 MKIAIFGTVGAGKSTISAEISKKLGYEIF 29
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 29.7 bits (67), Expect = 0.99
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 50 FSSNIRMNHTQAAPVNKIELLRSLEASLGHAF-DSNPVCPPPNPLIIVISGPSGVGKDTV 108
+ +A + + ++ L+ L ++ P + IV+ G +G GK T
Sbjct: 62 TLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTT 121
Query: 109 IKKL 112
+ KL
Sbjct: 122 LAKL 125
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 29.3 bits (67), Expect = 1.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 91 NPLIIVISGPSGVGKDTVIKKL 112
+ I + GP+ GK T+ K++
Sbjct: 2 KAINIALDGPAAAGKSTIAKRV 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.9 bits (64), Expect = 1.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
+ + G GK T+++K
Sbjct: 6 VWQVVGYKHSGKTTLMEKW 24
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 29.2 bits (66), Expect = 1.2
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK--DYFFVSKEEFLQ 150
++I I G G GK T+++KL + + V + P V + L
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLA 60
Query: 151 MVDKNELLEYA-----LVYGDYKGIPKKQIREYMAKGYDIVL 187
+A V I+ ++L
Sbjct: 61 SSVYAMATLFALDRAGAV---------HTIQGLCRGYDVVIL 93
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 91 NPLIIVISGPSGVGKDTVIKKL 112
+ I I GP+ GK TV K +
Sbjct: 15 KTIQIAIDGPASSGKSTVAKII 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 29.4 bits (66), Expect = 1.2
Identities = 33/206 (16%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRE--SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE 147
+ ++I+++G GVGK T K L + S++++ +V G ++ F V KE+
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL--------GSDLIRESFPVWKEK 53
Query: 148 FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVD----IQGAR----TLRR 199
+ + + K+ ++ + K Y ++ VD R + +
Sbjct: 54 YEEFIKKS----------------TYRLIDSALKNYWVI--VDDTNYYNSMRRDLINIAK 95
Query: 200 ILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFD--YVVVNA 257
+ ++L A ++ + R +ER + E++ ++ +E +D +++++
Sbjct: 96 KYNKNYAIIYLKASLDVLI-RRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDT 154
Query: 258 EGKLDSAVKLVESVIDAEKAKVRQRS 283
+D ++ + +I+ K +
Sbjct: 155 TKDIDFN-EIAKKLIEKSKEIPKFYV 179
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.9 bits (66), Expect = 1.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
I+ I GPS GK +V +++
Sbjct: 4 IVTIDGPSASGKSSVARRV 22
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
E + + + + P +I+ G +G GK T I KL
Sbjct: 105 EAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKL 149
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 29.0 bits (66), Expect = 1.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
+I I GPSG GK T+ K +
Sbjct: 7 VITIDGPSGAGKGTLCKAM 25
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 29.0 bits (66), Expect = 1.4
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
R P P ++++ G +GVGK T I KL
Sbjct: 78 PDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.2 bits (66), Expect = 1.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
I + +G SGVGK +++ L
Sbjct: 217 ISIFAGQSGVGKSSLLNAL 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 28.6 bits (64), Expect = 1.5
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
II+ G G GK T ++ + + R +Y + K+E +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 152 VDKNELLEYALVYGD 166
+ + + L GD
Sbjct: 62 GMQFDTAKSILYGGD 76
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 91 NPLIIVISGPSGVGKDTVIKKLRE---SRDSLHFVVT 124
IVI G G GK T + E V T
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
LL+ + SN P + +SGP G GK T I+
Sbjct: 52 VLLQKVLLYHREQEQSNK--GKPLAFRVGLSGPPGAGKSTFIEYF 94
>3vgp_A Transmembrane oligosaccharyl transferase, putativ;
glycosyltransferase, cell membrane; 1.75A {Archaeoglobus
fulgidus}
Length = 164
Score = 28.2 bits (62), Expect = 1.9
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 15/88 (17%)
Query: 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK 154
+V + + K + A E ++F + L M +
Sbjct: 89 VVTADEITMKDANNTK-------FPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENA 141
Query: 155 NELLEYALVY--GDYKGIPKKQIREYMA 180
L + LV GD K I E +
Sbjct: 142 ENLTHFRLVKEFGDVK------IFEVVG 163
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA
architectural protein, tyrosine recombinase,
winged-helix protein; NMR {Enterococcus faecalis}
Length = 70
Score = 26.7 bits (59), Expect = 2.0
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 140 YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDI 185
YF + + + ++ ++N+ + ++ G+ I +KQ + + I
Sbjct: 25 YFRIGENKLRRLAEENKNANWLIMNGNRIQIKRKQFEKIIDTLDAI 70
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 28.7 bits (65), Expect = 2.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 53 NIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
+ A K +L L D+ PP P +I++ G +G GK T KL
Sbjct: 71 RLEEKDGDALESLKEIILEILNF------DTKLNVPPEPPFVIMVVGVNGTGKTTSCGKL 124
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 28.4 bits (64), Expect = 2.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
+IV G GK T + E
Sbjct: 5 ALIVFEGLDKSGKTTQCMNIME 26
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 28.4 bits (62), Expect = 2.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRE 114
PL I SGP G GK ++
Sbjct: 31 PLFIFFSGPQGSGKSFTSIQIYN 53
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 28.3 bits (64), Expect = 2.7
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
L ++ + I ++ G +G GK T + K+
Sbjct: 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKM 125
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 27.9 bits (63), Expect = 2.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
++I G G GK T KKL E
Sbjct: 1 MLIAFEGIDGSGKTTQAKKLYE 22
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 28.1 bits (62), Expect = 2.8
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVFL-----AAESEMALVERLVERKTENREEL 233
+ G D V VDI+G+R L L L+ +L E +
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL-EPV 125
Query: 234 LVRIATAREEVQHVKNFDYVVVNAE 258
+ A+ E+ + +++ + E
Sbjct: 126 KHMLEEAKRELAGMPVGKFILASME 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 2.9
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 87 CPPPNPLIIVISGPSGVGKDTVI-----KKLRESRDSLHFVVTATSRPMRPGEVNGKDYF 141
C + L I++ G +G GK K+ ES+ + S G ++
Sbjct: 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCS--KSQGSWGNREIV 74
Query: 142 FV 143
+
Sbjct: 75 II 76
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKK----LRESRDSLHFVVT 124
P + I G G GK T L E + V+T
Sbjct: 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT 57
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 95 IVISGPSGVGKDTVIKKLRE 114
IV GP GK T +K +
Sbjct: 17 IVYYGPGLSGKTTNLKWIYS 36
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 28.0 bits (63), Expect = 3.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
+I+I G GK T L +
Sbjct: 6 KLILIEGLDRTGKTTQCNILYK 27
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 28.2 bits (62), Expect = 3.6
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 89 PPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM 130
L I + G G+GK T ++ + P+
Sbjct: 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPL 50
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.9 bits (63), Expect = 3.6
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH 120
+ L VI G G GK TV ++ + H
Sbjct: 1 MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKH 35
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 27.6 bits (62), Expect = 3.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
++I G G GK + L++ + V
Sbjct: 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.6 bits (62), Expect = 3.8
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
IV G GK T K L E + + V P
Sbjct: 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFP 47
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 27.5 bits (62), Expect = 4.0
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTAT 126
+ + GP G GK T L E V T
Sbjct: 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.8 bits (62), Expect = 4.4
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
+L+ ++ G A + I+G GVGK T I L
Sbjct: 43 DLIDAVLPQTGRAI------------RVGITGVPGVGKSTTIDAL 75
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.8 bits (61), Expect = 4.6
Identities = 21/187 (11%), Positives = 59/187 (31%), Gaps = 20/187 (10%)
Query: 70 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGK----DTVIKKLRESRDSLHFVVTA 125
LR ++ + + + + G +G GK + ++ E +
Sbjct: 29 LRDAAIAIRYFVKNEV---KFS---NLFLGLTGTGKTFVSKYIFNEIEEVKKE-----DE 77
Query: 126 TSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDI 185
+ ++ VN ++ + + K + K I
Sbjct: 78 EYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAII 137
Query: 186 VLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ 245
L ++R GD ++ L +++ ++++ ++ R+ + R+ ++
Sbjct: 138 YLDEVDT---LVKRRGGDIVLYQLLRSDANISVI--MISNDINVRDYMEPRVLSSLGPSV 192
Query: 246 HVKNFDY 252
K +D
Sbjct: 193 IFKPYDA 199
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 27.2 bits (61), Expect = 5.1
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKLRE 114
I G G GK T ++ +
Sbjct: 21 SMARGKFITFEGIDGAGKTTHLQWFCD 47
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 27.2 bits (61), Expect = 5.8
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH 120
+ + +++ G G GK T ++E
Sbjct: 4 HHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQ 36
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 27.1 bits (61), Expect = 5.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTAT 126
+ I G G GK T I+ L + + V
Sbjct: 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 6.1
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 60 QAAPVNKIEL-LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVI 109
V K++ L + E S ++F ++ GP G+GK T
Sbjct: 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 94 IIVISGPSGVGKDTVIK 110
++V+ GPSG GK T ++
Sbjct: 52 VVVVIGPSGSGKSTFLR 68
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.2 bits (61), Expect = 6.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH 120
+ PV P + V+ GP G GK T KL ++ H
Sbjct: 7 AEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCH 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
+I I GP+G+GK T +K L
Sbjct: 384 VIGIVGPNGIGKTTFVKML 402
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.7 bits (58), Expect = 6.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
++ + SG GK T++KKL
Sbjct: 8 LLAFAAWSGTGKTTLLKKL 26
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 26.8 bits (60), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
IVI G G GK T I+ + E
Sbjct: 28 KFIVIEGLEGAGKSTAIQVVVE 49
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
I GP G GK TVI ++
Sbjct: 3 AFITFEGPEGSGKTTVINEVYH 24
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.1 bits (61), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKL 112
P +I+I G +G GK T + KL
Sbjct: 96 GFRKPAVIMIVGVNGGGKTTSLGKL 120
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 27.1 bits (60), Expect = 7.7
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 12/45 (26%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
+LL ++ G+ + ++G G GK T ++
Sbjct: 44 QLLDAIMPYCGNTL------------RLGVTGTPGAGKSTFLEAF 76
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 27.3 bits (61), Expect = 7.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
II I GP+G+GK T + L
Sbjct: 296 IIGILGPNGIGKTTFARIL 314
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.0 bits (59), Expect = 7.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 92 PLIIVISGPSGVGKDTVIKKLRE 114
+I+V G +G GK T+ +
Sbjct: 14 SMIVVFVGTAGSGKTTLTGEFGR 36
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.0 bits (59), Expect = 7.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTA 125
I ++ G GK ++IK + + +
Sbjct: 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 27.1 bits (60), Expect = 8.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL 112
+LL L G+A + I+G GVGK T I+ L
Sbjct: 67 QLLLRLLPDSGNAH------------RVGITGVPGVGKSTAIEAL 99
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 27.0 bits (59), Expect = 8.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKLRE 114
+ I + G G+GK T + +
Sbjct: 5 VTIVRIYLDGVYGIGKSTTGRVMAS 29
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 26.9 bits (60), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 94 IIVISGPSGVGKDTVIKKL 112
I+V+ G +G GK T+IK L
Sbjct: 380 ILVMMGENGTGKTTLIKLL 398
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 26.9 bits (60), Expect = 8.5
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 161 ALVYGDYKGIPKKQIREYMAKGYDIV-LRV------DIQGARTLRRILGDSA 205
G P+ + A+GY L+V D++ A +R +LG +
Sbjct: 149 VYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAAT 200
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 26.9 bits (60), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 90 PNPLIIVISGPSGVGKDTVIKKL 112
P+ ++ +GP GVGK T L
Sbjct: 47 PH---LLFAGPPGVGKTTAALAL 66
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_G* 3hs0_B*
Length = 252
Score = 26.7 bits (58), Expect = 9.0
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 79 HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSR-PMRPGEVNG 137
F P+ + + I S + D V KKL+ + + + + R V G
Sbjct: 148 VPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGG 207
Query: 138 KDYFFVSKEEFLQMVDKNELLEYALVYGD 166
+ + V E+ ++ GD
Sbjct: 208 TQLEVIKARKLDDRVPDTEIETKIIIQGD 236
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 26.5 bits (59), Expect = 9.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 87 CPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH 120
L VI GP G GK TV +++ ++ H
Sbjct: 22 SMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 26.5 bits (59), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 93 LIIVISGPSGVGKDTVIKKLRE 114
I GP G GK TVI ++
Sbjct: 27 AFITFEGPEGSGKTTVINEVYH 48
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 26.9 bits (60), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 88 PPPNPLIIVISGPSGVGKDTVIKKL 112
P +I+I G +G GK T + KL
Sbjct: 153 GFRKPAVIMIVGVNGGGKTTSLGKL 177
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 26.8 bits (60), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 90 PNPLIIVISGPSGVGK 105
P +IVI GP+ GK
Sbjct: 5 TKPFLIVIVGPTASGK 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.372
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,330,623
Number of extensions: 269537
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 175
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)