Query 043264
Match_columns 435
No_of_seqs 400 out of 2385
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 04:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.7E-44 3E-48 343.4 34.6 386 20-434 8-416 (491)
2 3o7q_A L-fucose-proton symport 100.0 6.4E-33 2.2E-37 263.5 26.0 332 25-430 27-388 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 8.1E-34 2.8E-38 270.7 19.0 359 20-434 24-392 (451)
4 2gfp_A EMRD, multidrug resista 100.0 5.9E-32 2E-36 251.5 8.4 329 29-434 5-336 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-28 7.9E-33 235.6 23.1 349 74-434 49-432 (491)
6 2xut_A Proton/peptide symporte 99.9 7.8E-24 2.7E-28 205.6 19.5 141 76-219 51-196 (524)
7 2cfq_A Lactose permease; trans 99.9 2.4E-25 8.1E-30 209.6 6.7 305 75-429 39-353 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 6.8E-12 2.3E-16 118.9 14.2 144 74-220 283-432 (451)
9 2cfq_A Lactose permease; trans 99.4 2.1E-12 7.3E-17 121.1 10.5 147 77-226 257-405 (417)
10 3o7q_A L-fucose-proton symport 99.2 2.4E-10 8.2E-15 107.8 14.5 141 75-220 291-431 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1.2E-10 4.1E-15 111.7 12.5 141 75-219 315-469 (491)
12 4gc0_A D-xylose-proton symport 99.1 5.3E-10 1.8E-14 107.1 14.0 151 75-225 308-467 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.1E-08 7.2E-13 92.4 7.3 119 299-433 15-133 (375)
14 2xut_A Proton/peptide symporte 98.6 1.4E-07 4.7E-12 91.1 9.8 114 300-428 28-149 (524)
15 2g9p_A Antimicrobial peptide l 58.5 4.7 0.00016 19.0 1.2 14 98-111 2-15 (26)
16 3arc_T Photosystem II reaction 23.5 81 0.0028 16.5 2.5 10 217-226 19-28 (32)
17 4dve_A Biotin transporter BIOY 21.9 1.7E+02 0.006 23.2 5.6 25 85-109 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.7e-44 Score=343.43 Aligned_cols=386 Identities=24% Similarity=0.376 Sum_probs=310.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
.+.+.++++++++.+++|||.++++.. +|.+.+++..+... ..+.++.+.+++.+++.+|.++|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~~~----------~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQNL----------SESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGGCC----------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCC----------CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999865 47777776433211 124567788999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHH------------------hccchhHHHHHHhhhhccccccccccchhhhccc
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHA------------------LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMA 161 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (435)
|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHH
Q 043264 162 PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN-----FKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQ 236 (435)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~ 236 (435)
|+++|++..++.+.+...|.++++.++.......+ ...||+.+.+..++.++..+..+++||||+|+..+++.|+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 99999999999999999999999999887765432 3568999999999988888888999999999999999999
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCC
Q 043264 237 ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGI 316 (435)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 316 (435)
+++.+++.+.++...++. .+.++..+++++ ....... ...++.........+.++.+......|.+.+.+..+.
T Consensus 236 a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAV-QEIKHSLDHGRK--TGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred HHHhHHHhcCCchhHHHH-HHHHHHHHhhhh--hhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 999988876443211111 111111111111 1111111 2233445666666777788888899999999888888
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHH
Q 043264 317 RLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCF 396 (435)
Q Consensus 317 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (435)
+...........++..+++.++++++.||+|||+.+..+...+.++++.+..... .....+..++..++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-----------TQAPGIVALLSMLF 378 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH-----------TTCCHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh-----------cccchHHHHHHHHH
Confidence 8777777888889999999999999999999999999998888888877766543 33444555666667
Q ss_pred HHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 397 LGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+..+++.++.|+.+.+.+|++|++.|+++.|+++++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 379 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 77777888888888999999999999999999988775
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.4e-33 Score=263.45 Aligned_cols=332 Identities=15% Similarity=0.148 Sum_probs=248.4
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhh
Q 043264 25 ICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTT 104 (435)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d 104 (435)
....+++..+..+++....++. +|.+.+++ |+++.+.+++.+++.++..+++++.|+++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444445557777777766644 36666666 899999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHH---HhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHH
Q 043264 105 SAGRKGALIIGGIIYLIGVSLH---ALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGV 181 (435)
Q Consensus 105 r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 181 (435)
|+|||++++++.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hcCCCC----------------------cchHHHHhhhHHHHHHHHHhc--cCCCChhhHHhcCCHHH
Q 043264 182 AGASWINYFIM-SSLNFK----------------------RWRIAVSVSGFPATLMTIIAF--FIPDTPSSLIQRGKVQQ 236 (435)
Q Consensus 182 ~~~~~l~~~l~-~~~~~~----------------------~wr~~~~~~~~~~~~~~~~~~--~~pesp~~l~~~~~~~~ 236 (435)
.+++.+++.+. +..+.. +||+.|++.+++.++..+..+ ..||+++. +++.
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-- 241 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-- 241 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC--
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc--
Confidence 99999999988 433210 199999877766665554433 35665531 0000
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-HHHc-
Q 043264 237 ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI-VTSL- 314 (435)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 314 (435)
+++++.+.+++++++++..+...+.. +...........+.|.+ +++.
T Consensus 242 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 242 ---------------------------AKQGSFSASLSRLARIRHWRWAVLAQ----FCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp ---------------------------SSTTSHHHHHHHHTTCSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---------------------------ccccchhhhHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhccC
Confidence 00111123445555544433333222 22222355666788888 7764
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHH
Q 043264 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILR 394 (435)
Q Consensus 315 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (435)
|+++.+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... +..+ .....
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~ 354 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------------GGHV-GLIAL 354 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------------CHHH-HHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------------CCcH-HHHHH
Confidence 9999999999999999999999999999999999999988887777766555432 1222 23344
Q ss_pred HHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 395 CFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
++.+++.+... |..+.+..|.+|++ ++++.++..
T Consensus 355 ~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 355 TLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH
Confidence 56666665554 45567778999976 888887765
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.1e-34 Score=270.67 Aligned_cols=359 Identities=16% Similarity=0.078 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
+..+.......++.+..+++....++. ...+ .+++ .+..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA------MPYL--------------VEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH------HHHT--------------TSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------------HHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666677777776665432 2222 3335 788999999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHH
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHAL----AVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQI 175 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (435)
|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCc-chHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHH
Q 043264 176 FFWSGVAGASWINYFIMSSLNFKR-WRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSEN 253 (435)
Q Consensus 176 ~~~~g~~~~~~l~~~l~~~~~~~~-wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (435)
+.++|.+++|.+++.+.+. .+ ||+.|++.+++.++..+. .+++||+|+....+++.++ ++ +.+.
T Consensus 163 ~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~ 228 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KN-DYPD 228 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CC-C---
T ss_pred HHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cc-cccc
Confidence 9999999999999987764 45 999999988887766554 4668998864322111110 00 0000
Q ss_pred HHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHH
Q 043264 254 ELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIF 332 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 332 (435)
+. ++..+++...++...++.+++ +.++...+..+...........+.|.++++ .|++..+.+.......++.
T Consensus 229 ~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 229 DY---NEKAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp -------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred cc---hhhhhcccccccchHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 000000000000112333322 223333333344444466777888888876 7999999999999999999
Q ss_pred HHHHhhhHHHHhhh--cchHHHHHhHHHHH-HHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccc
Q 043264 333 FVCLLLTGYLIDRV--GRRIMLIVGGCQIF-ICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLP 409 (435)
Q Consensus 333 ~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (435)
+++.++.+++.||+ +||+.+..+..+.. ++.+++... +..+.+...+..++.+.+.+.... ..
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~-~~ 367 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVM-LI 367 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHH-HH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHH-HH
Confidence 99999999999999 99988877666555 443333221 222455555566666665554433 33
Q ss_pred ceeecccCChhhhhhhhHHHHhhhc
Q 043264 410 WILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 410 ~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+..|.+|++.|+++.|+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHH
Confidence 5777899999999999999987654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5.9e-32 Score=251.48 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=242.8
Q ss_pred HHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc
Q 043264 29 VASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR 108 (435)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 108 (435)
++++.+..+++.....+. .|.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPA--IADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhh--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334456666666666543 24555444 8999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 043264 109 KGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWIN 188 (435)
Q Consensus 109 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 188 (435)
|+++..+.++..++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.++
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhh
Q 043264 189 YFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRI 267 (435)
Q Consensus 189 ~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (435)
+.+.+.. +||+.|.+.++..++..+. .+.+||+++.. + +++
T Consensus 145 ~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~ 186 (375)
T 2gfp_A 145 GLLDTMW---NWRACYLFLLVLCAGVTFSMARWMPETRPVD---A--------------------------------PRT 186 (375)
T ss_dssp HHSSCHH---HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---C--------------------------------CCC
T ss_pred HHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---c--------------------------------ccc
Confidence 9987753 5999999888887776663 45688876420 0 001
Q ss_pred hccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh
Q 043264 268 ASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV 346 (435)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (435)
+.++++++.++++..+. ..+..+...........+.|.++++ .|.++.+.+.......++.+++.++.+++.||.
T Consensus 187 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNC----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp CTTTCSTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred cHHHHHHHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444444332222 2222233333355566777777655 788888899999999999999999999999999
Q ss_pred cchHHHHHhHHH-HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhh
Q 043264 347 GRRIMLIVGGCQ-IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAG 425 (435)
Q Consensus 347 g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 425 (435)
+++. ..+... ...+...+..... ...+.+...+..++.+++.+... +....+..|.+| ++|+++
T Consensus 263 ~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 263 STLM--WQSVICCLLAGLLMWIPDWF-----------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHHH--HHHHHHHHHTSSSSSHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhhh-----------ccccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchH
Confidence 8732 222222 2222221111110 12344555566667777776654 454677889998 899999
Q ss_pred hHHHHhhhc
Q 043264 426 QGLSTAISF 434 (435)
Q Consensus 426 ~~~~~~~~~ 434 (435)
.|+.+..+.
T Consensus 328 ~g~~~~~~~ 336 (375)
T 2gfp_A 328 GALVGGLQN 336 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=2.3e-28 Score=235.57 Aligned_cols=349 Identities=13% Similarity=0.038 Sum_probs=226.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 58999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC-CC----Ch
Q 043264 153 APIYLVEMAPTKW--RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI-PD----TP 225 (435)
Q Consensus 153 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pe----sp 225 (435)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. |+ ..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 9999999999988 667888899999999999999999998864 49999999877666655443321 11 11
Q ss_pred hhHHhcCCHHHHHHHHHH----------------H-hCCCcCcHHHHHHHHHH---HH-HhhhhccccHhhhhccCchhH
Q 043264 226 SSLIQRGKVQQALKSLNQ----------------V-RGTKFDSENELKYLIKY---NE-DMRIASETPYKMLLERKYRPH 284 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~~~~----------------~-~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 284 (435)
+....+.+.++.++..++ . ...+.+........... .. ..+..+........+++.. .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 284 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV-S 284 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT-T
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH-H
Confidence 100111223333332222 0 11111111110000000 00 0000000000000111111 1
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHH-----HhHHH
Q 043264 285 LLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLI-----VGGCQ 358 (435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~ 358 (435)
.....+..............+.+.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..+
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 -YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp -HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 1111111111111233334455666654 5666677788888889999999999999999999986544 56666
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 359 IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 359 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+++.+++.......... ...+.+......++.+.+.+.. .+..+.+..|.+|++.|+++.|+.+...+
T Consensus 364 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666655555432211100 1234455556666666666554 34556788999999999999999887653
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=7.8e-24 Score=205.60 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=129.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhhhc-cchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhcccccccccc
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-GRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
++..+.+++.+++.++..++++++|+++||+ |||+++.++.++..++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred chhhhcccCCCCcchhhhH---HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 154 PIYLVEMAPTKWRGAIGTG---FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
.+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 88999999999999999888754 599999998877666555543
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=2.4e-25 Score=209.65 Aligned_cols=305 Identities=11% Similarity=0.052 Sum_probs=185.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHH---HHHHhccch-hHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGV---SLHALAVNM-GMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~~ 150 (435)
|+++.+.|++.+.+.++..++++++|+++||+|||++++++..+..++. ..+.+++.. ..+...+++.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999887775532 212232221 123456667776666555
Q ss_pred cccchhhhcccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhH
Q 043264 151 QTAPIYLVEMAPT--KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL 228 (435)
Q Consensus 151 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l 228 (435)
+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.||+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~- 193 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS- 193 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc-
Confidence 5545555555433 345667777777788899999999998876 359999988877765555555554433310
Q ss_pred HhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 229 IQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
+.+.++. .+ +++++....+++++++++..+...+ ..+.....+.....+.|
T Consensus 194 --~~~~~~~---------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 194 --SATVANA---------VG--------------ANHSAFSLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFA 244 (417)
T ss_dssp --SSCSSSS---------SS--------------SCCCCCCHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred --ccccccc---------cc--------------cccccccHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHH
Confidence 0000000 00 0000000112233443322222111 11111111233334466
Q ss_pred HHHHH-cC---CCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 309 LIVTS-LG---IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 309 ~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.++.+ .+ .+....+....+..++.+++.++.+++.||+|||+.+..+..+.+++.+.+.+ .
T Consensus 245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------------~- 309 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------A- 309 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------------C-
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------------h-
Confidence 66544 22 12334466777778888999999999999999999988777766665444322 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
.+.+..++...+.+.+.+.... ..+.+.+|.+|++.|+++.++.
T Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence 2233344444444444333222 2356789999999999998885
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=6.8e-12 Score=118.91 Aligned_cols=144 Identities=19% Similarity=0.106 Sum_probs=125.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhc--cchhHHHHHHHHHH-HHHHHHHhc--cchhHHHHHHhhhhccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA--GRKGALIIGGIIYL-IGVSLHALA--VNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 148 (435)
+|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988877776 666666666 3677788888999999888
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWS-GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
..+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. +|+..|++.++..++..+..++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 9999999999998864 4999998888777776665443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=2.1e-12 Score=121.13 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchh
Q 043264 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIY 156 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (435)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999988888888888888888888888888888877777777889
Q ss_pred hhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChh
Q 043264 157 LVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPS 226 (435)
Q Consensus 157 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~ 226 (435)
+.|.+|++.|+.+.+. ++....+|..++|.+++.+.+.. +++..|.+.+++.++..+. ....||.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 47888899999999999988753 4888888888777776655 344666553
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.19 E-value=2.4e-10 Score=107.81 Aligned_cols=141 Identities=10% Similarity=-0.057 Sum_probs=117.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999888887665544 888999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..|.+.++..++..+..+.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 888888776 556899999999999988643 2777777766555544444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.18 E-value=1.2e-10 Score=111.65 Aligned_cols=141 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH-----HHHHHHHHHHHHHHhcc---------chhHHHHHHh
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI-----IGGIIYLIGVSLHALAV---------NMGMLFLGRV 140 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~ 140 (435)
+.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 445567788889999999999999999999999986655 67777777766666542 6777888889
Q ss_pred hhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 141 FTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
+.|++.+...+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+. ++...|.+.++..++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877653 466677777766666555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=5.3e-10 Score=107.14 Aligned_cols=151 Identities=16% Similarity=0.053 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 149 (435)
+.+............+...++.++.+.+.||+|||+.++.+.....++.+..+.. ++...+...-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 4555666667777888889999999999999999999999888887776655443 11222222222222222234
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHhhhHHHHHHHHH-hccCCCCh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL---NFKRWRIAVSVSGFPATLMTII-AFFIPDTP 225 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp 225 (435)
.+....+.+|.+|.+.|+.+.++......+|..+++.+...+.+.. ...++...|++.++++++..+. .+++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999988888888877765553321 0123556777777777776655 46799985
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.70 E-value=2.1e-08 Score=92.35 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 299 GFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
.........|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+.....++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34555666777778899999999999999999999999999999999999999999988888887776654
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
++.+...+..++.+.+.+... +....+..|.+|+++|+++.++.+...
T Consensus 86 ------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 86 ------SSLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGI 133 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 345566666777777766553 344577889999999999999877653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.59 E-value=1.4e-07 Score=91.11 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHH-HHcC------CCCCchHHHHHHHHHHHHHHHhhhHHHHhhh-cchHHHHHhHHHHHHHHHHHHHHHH
Q 043264 300 FNLNAVVGQLIV-TSLG------IRLKDVFPILIIQSTIFFVCLLLTGYLIDRV-GRRIMLIVGGCQIFICQVILAILMA 371 (435)
Q Consensus 300 ~~~~~~~~~~~~-~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~ 371 (435)
++....+.+.++ ++.| ++..+.++..+...++..++.++.|+++||+ |||+.+..+..+.+++.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 445556666665 4578 9999999999999999999999999999999 99999999888888877666542
Q ss_pred hhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
..+.+...+..++.+++.+... +....++.|.+|+++|+++.+.
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHH
Confidence 1145566666777777766654 3445778999999999766555
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.52 E-value=4.7 Score=19.00 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.2
Q ss_pred hHHHhhhhccchhH
Q 043264 98 MAGRLTTSAGRKGA 111 (435)
Q Consensus 98 ~~g~l~dr~Grr~~ 111 (435)
+.|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.48 E-value=81 Score=16.54 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=6.8
Q ss_pred HhccCCCChh
Q 043264 217 IAFFIPDTPS 226 (435)
Q Consensus 217 ~~~~~pesp~ 226 (435)
...+++|+|+
T Consensus 19 FAI~FRePPr 28 (32)
T 3arc_T 19 FAIFFREPPR 28 (32)
T ss_dssp HHHHTSCCCC
T ss_pred HhhhhcCCCC
Confidence 3456788885
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.91 E-value=1.7e+02 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhhccch
Q 043264 85 NSSLYIAGIFSALMAGRLTTSAGRK 109 (435)
Q Consensus 85 ~s~~~~~~~i~~~~~g~l~dr~Grr 109 (435)
+.-|.+|..++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788888889999999987543
Done!