BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043265
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690
OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
Length = 579
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 47/230 (20%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G++PN TF+ V AC G ++E F HF+S+ ++ I+P EH+LG++ + G+ + E
Sbjct: 332 GLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVE 391
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE----------------------PSSS 157
A ++IR++ + ++ WE + YA+ + L + P S
Sbjct: 392 AEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPPKS 451
Query: 158 LRLSN-------------------------KKKDAGYMPYTEYVLRDLDQEAKEKPQTYR 192
+ +N KK Y+P T +VL D+DQEAKE+ Y
Sbjct: 452 FKETNMVTSKSRILEFRNLTFYKDEAKEMAAKKGVVYVPDTRFVLHDIDQEAKEQALLYH 511
Query: 193 SERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
SERLA+AYG+I TPP +TL I KNLR+CG+CHNFIK +S I R +IVRD
Sbjct: 512 SERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRD 561
>sp|P0C7R1|PPR74_ARATH Pentatricopeptide repeat-containing protein At1g47580,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2
SV=1
Length = 239
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 160 LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
L + +DAGY+P T+YVL D+D+EAKEK + SERLA+A+G+I+TPPG T+R+ KNLRI
Sbjct: 139 LGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRI 198
Query: 220 CGECHNFIKKLSSIENREIIVRD 242
CG+CHNFIK LSSIE+REIIVRD
Sbjct: 199 CGDCHNFIKILSSIEDREIIVRD 221
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 146/316 (46%), Gaps = 76/316 (24%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR 62
N+ + C+ ++ AL V +++K + S I L + L+ +R ++ G +
Sbjct: 297 NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTK 356
Query: 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEARE 122
PN+ T VGV+ AC G +++G+ +F S+ + Y I+P EH+ ++DL G+ K+ +A +
Sbjct: 357 PNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVK 416
Query: 123 FI----------------------RNM-------------------------QIDASSVV 135
+ RNM I A+S
Sbjct: 417 LLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQK 476
Query: 136 WETLEKY--------AQTEPG------------LLLGEPSSSLRLSNKKK---------D 166
W+++E+ + EPG ++G+ S + KK
Sbjct: 477 WDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Query: 167 AGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNF 226
GY+P T +VL+DL+ E E + SE+LA+A+GL++ P + +RI+KNLRICG+CH F
Sbjct: 537 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVF 596
Query: 227 IKKLSSIENREIIVRD 242
K S +E R I++RD
Sbjct: 597 CKLASKLEIRSIVIRD 612
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG----KRFE 57
L SE LC +R++ A++ MD L++ G++ DS EL+ C+ + + G +
Sbjct: 29 LLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLY 88
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT 100
+G RP +I F +++ Q F+ + + I+ T
Sbjct: 89 FNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWT 131
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109
LE KR + G +T V+ AC ++ G Q + + YD + L + +VD
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNN--ALVD 301
Query: 110 LYGRLQKIAEAREFIRNMQIDASSVVWETL-EKYAQTEPGLLLGEPSSSLRLSNKKKDAG 168
+Y + + +A M+ + + W T+ AQ G +L+L + K +G
Sbjct: 302 MYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQN------GYSQEALKLFERMKSSG 354
Query: 169 YMP 171
P
Sbjct: 355 TKP 357
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 133/309 (43%), Gaps = 78/309 (25%)
Query: 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVIT 73
+V AA ++ ++++ + + I+ + K L + GV+PN TFVG+I
Sbjct: 288 DVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIY 347
Query: 74 ACGCFGAVDEGFQHFESVTRDYDIN----------------------------------- 98
AC G V++G + F+S+T+DY I
Sbjct: 348 ACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDE 407
Query: 99 PTLEHFLGIVDLYGRLQ-------------KIAEAREFIRNMQIDASSVVW----ETLEK 141
PT L GR Q K+ + +I I AS+ +W E K
Sbjct: 408 PTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRK 467
Query: 142 YAQTE----PG------------LLLGEPSSSL-----RLSNKKKDA-----GYMPYTEY 175
+ E PG GE S L RL K ++ GY+P T +
Sbjct: 468 LGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSW 527
Query: 176 VLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIEN 235
+L D+D++ KEK + SER AVAYGL+ PG +RI KNLR+CG+CH +K +S I
Sbjct: 528 ILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITE 587
Query: 236 REIIVRDKT 244
REIIVRD T
Sbjct: 588 REIIVRDAT 596
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 61 VRPNWSTFVGVITACGCFGAVDEGFQ-HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
+RP+ F ++ AC G++D G Q H + +Y + ++ L VD+Y + +
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSL--VDMYAKCGLLNS 158
Query: 120 AREFIRNMQIDASSVVWETL-EKYAQT 145
A+ ++++ +++ W + YA++
Sbjct: 159 AKAVFDSIRVK-NTISWTAMVSGYAKS 184
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 114/259 (44%), Gaps = 76/259 (29%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G PN+ TFV +++AC GAV+ G + F+S+ Y I P EH+ IVD+ GR +
Sbjct: 408 GPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVER 467
Query: 120 AREFIRNMQIDASSVVWETLEK----YAQTEPGLLLGE------PSSS---LRLSNK--- 163
A EFI+ M I + VW L+ + + + GLL E P S + LSN
Sbjct: 468 AYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAA 527
Query: 164 -------------------KKDAGY------------------------MPYTEYVLRDL 180
KK AGY + T LR+
Sbjct: 528 AGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNE 587
Query: 181 DQEAKEKPQ-----------------TYRSERLAVAYGLISTPPGRTLRIKKNLRICGEC 223
+ A KP ++ SE+LA+A+GL+S P +RI KNLRICG+C
Sbjct: 588 MEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDC 647
Query: 224 HNFIKKLSSIENREIIVRD 242
H+F K +S REIIVRD
Sbjct: 648 HSFFKFVSGSVKREIIVRD 666
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 122/269 (45%), Gaps = 76/269 (28%)
Query: 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109
L++ + + VRPN T VGV++AC G VD+G +FES+ +Y ++P EH++ +VD
Sbjct: 778 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 837
Query: 110 LYGRLQKIAEAREFI----------------------RNMQI--------------DASS 133
+ R ++ A+EFI +NM+I D+++
Sbjct: 838 MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSAT 897
Query: 134 VV-----------WETL--------EKYAQTEPGLLLGEPSSSLR--------------- 159
V W+ EK + EPG E +S+
Sbjct: 898 YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 957
Query: 160 ------LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRI 213
L+ + + GY+ +L +L E K+ SE+LA+++GL+S P + +
Sbjct: 958 HEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINV 1017
Query: 214 KKNLRICGECHNFIKKLSSIENREIIVRD 242
KNLR+C +CH +IK +S + NREIIVRD
Sbjct: 1018 MKNLRVCNDCHAWIKFVSKVSNREIIVRD 1046
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 48 KLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ-HFESVTRDYDINPTLEHFLG 106
K +E KR DG+ P+ +T ++ AC G + G Q H + + N +E
Sbjct: 372 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG--A 429
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETL 139
+++LY + I A ++ +++ + V+W +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVE-NVVLWNVM 461
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 112/261 (42%), Gaps = 76/261 (29%)
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKI 117
N G+ P TF+ V+ AC G V EG + F S+ Y P+++H+ +VD+ GR +
Sbjct: 514 NSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHL 573
Query: 118 AEAREFIRNMQIDASSVVWETL-----------------EKYAQTEP-----GLLLGE-- 153
A +FI M I+ S VWETL EK + +P +LL
Sbjct: 574 QRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIH 633
Query: 154 -------PSSSLRLSNKKKDAGYMP--------YTEYVLRDLDQ---------------- 182
++++R + KK+ P T +V DQ
Sbjct: 634 SADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLE 693
Query: 183 ----EAKEKPQT-----------------YRSERLAVAYGLISTPPGRTLRIKKNLRICG 221
EA +P+T SERLA+A+GLI+T PG +RI KNLR+C
Sbjct: 694 GKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCL 753
Query: 222 ECHNFIKKLSSIENREIIVRD 242
+CH K +S I R I+VRD
Sbjct: 754 DCHTVTKLISKITERVIVVRD 774
>sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580
OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
Length = 615
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 115/257 (44%), Gaps = 73/257 (28%)
Query: 55 RFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDL---- 110
RF+ +G P+ F G+ ACG G VDEG HFES++RDY I P++E ++ +V++
Sbjct: 345 RFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALP 404
Query: 111 -------------------------------YGRLQ---KIAEAREFIR----NMQ---- 128
+G L+ AE EF+ N Q
Sbjct: 405 GFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREG 464
Query: 129 ---IDASSVVWETLEKYAQTEPGLLLGEPSSS-------------------LR-LSNKKK 165
+ AS V E+L+K G+L G SS LR L
Sbjct: 465 FIPVKASDVEKESLKK----RSGILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 520
Query: 166 DAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHN 225
+ GY+ T L D+DQE+KE SER+A A ++++ P + + KNLR+C +CHN
Sbjct: 521 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 580
Query: 226 FIKKLSSIENREIIVRD 242
+K +S I RE+I RD
Sbjct: 581 ALKIMSDIVGREVITRD 597
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 89/278 (32%)
Query: 51 EAGKRFEN---DG-VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLG 106
EA K FE DG P+ TFVGV++AC G ++EGF+HFES++ Y + P +EHF
Sbjct: 703 EALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSC 762
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETL-------------------EKYAQTEP 147
+ D+ GR ++ + +FI M + + ++W T+ E Q EP
Sbjct: 763 MADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP 822
Query: 148 G-----LLLGEPSSS-------------LRLSNKKKDAGY------------------MP 171
+LLG ++ ++ ++ KK+AGY P
Sbjct: 823 ENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHP 882
Query: 172 YTEYVLRDLDQ------EAKEKPQT-----------------YRSERLAVAYGLI----S 204
+ + + L + +A PQT Y SE+LAVA+ L S
Sbjct: 883 DADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSS 942
Query: 205 TPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
T P +RI KNLR+CG+CH+ K +S IE R+II+RD
Sbjct: 943 TLP---IRIMKNLRVCGDCHSAFKYISKIEGRQIILRD 977
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 53/289 (18%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLL-EAGKRFE---- 57
N+ L L + E K L++ ++K++GI D I +L+ C L+ EA K
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHG 747
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ-- 115
+ G++P + + A G G V + ES++ + + L + G +
Sbjct: 748 DYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS-MYRTLLAACRVQGDTETG 806
Query: 116 -----KIAE-------AREFIRNMQIDASSVVWETLEKYAQT---------EPGLLLGEP 154
K+ E A + NM AS W+ + K A+T +PG E
Sbjct: 807 KRVATKLLELEPLDSSAYVLLSNMYAAASK--WDEM-KLARTMMKGHKVKKDPGFSWIEV 863
Query: 155 SSSLRL------SNKK---------------KDAGYMPYTEYVLRDLDQEAKEKPQTYRS 193
+ + + SN++ K GY+P T++ L D+++E KE+ Y S
Sbjct: 864 KNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHS 923
Query: 194 ERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
E+LAVA+GL+STPP +R+ KNLR+CG+CHN +K ++ + NREI++RD
Sbjct: 924 EKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
>sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2
SV=1
Length = 537
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 60/248 (24%)
Query: 55 RFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL 114
RF+ +G +P+ F + ACG G ++EG HFES+ ++Y I P +EH++ +V +
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331
Query: 115 QKIAEAREFIRNM-------------------------------QIDASSVVWETLEKYA 143
+ EA F+ +M Q+DAS + E+
Sbjct: 332 GYLDEALRFVESMEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAGLV 391
Query: 144 QTEPGLLLGE--------PSSSLR---------------------LSNKKKDAGYMPYTE 174
+ L+ E P+ +R L + GY+P ++
Sbjct: 392 PVKSSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHMIEIGYVPLSK 451
Query: 175 YVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIE 234
L D+DQE+K++ +ER A + TP +R+ KNLR+C +CHN +K +S I
Sbjct: 452 LALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIV 511
Query: 235 NREIIVRD 242
RE+I RD
Sbjct: 512 GRELISRD 519
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 105/288 (36%), Gaps = 86/288 (29%)
Query: 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGK---RFENDGV 61
EL +CRE +VK A+E++ +N G +D P + + +C D + L+ K F V
Sbjct: 152 ELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSV 211
Query: 62 R----PNWSTFVGVITACG-------------------------CFGAVDEGFQHFESVT 92
+++ + + + CG CF +G ++ +
Sbjct: 212 GISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFS 271
Query: 93 RDY----------------------DINPTLEHFLGIVDLYGRL---------------- 114
R D+N L HF + YG +
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331
Query: 115 QKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSL-------RLSNKKKDA 167
+ EA F+ +M+ + +WETL ++ L+LG+ + RL NK+ A
Sbjct: 332 GYLDEALRFVESMEPNVD--LWETLMNLSRVHGDLILGDRCQDMVEQLDASRL-NKESKA 388
Query: 168 GYMPY--TEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRI 213
G +P ++ V L + AK R +A G IS P R L +
Sbjct: 389 GLVPVKSSDLVKEKLQRMAKGPNYGIR----YMAAGDISRPENRELYM 432
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 59/83 (71%)
Query: 160 LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
LS + KD GY P T YVL+D+D E KE SERLA+A+GLI+TP G L I KNLR+
Sbjct: 767 LSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRV 826
Query: 220 CGECHNFIKKLSSIENREIIVRD 242
CG+CH IK ++ IE REI+VRD
Sbjct: 827 CGDCHLVIKLIAKIEEREIVVRD 849
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 47 LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLG 106
+K L+ K + V+ + TF+GV AC G V+EG ++F+ + RD I PT EH
Sbjct: 578 MKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 637
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKD 166
+VDLY R ++ +A + I NM A S +W T+ + LG ++ ++ K +D
Sbjct: 638 MVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED 697
Query: 167 -AGYMPYTEYVLRDLDQEAKEKPQTYRSER 195
A Y+ + D + + K + +ER
Sbjct: 698 SAAYVLLSNMYAESGDWQERAKVRKLMNER 727
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 80/272 (29%)
Query: 51 EAGKRFE---NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGI 107
+A K FE + G+ P+ TF ++ AC G V+EG +FE++++ Y I+P L+H+ +
Sbjct: 319 DAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCM 378
Query: 108 V----------DLYGRLQKIA-------------------------------------EA 120
V D YG ++++ +
Sbjct: 379 VDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDG 438
Query: 121 REFIRNMQIDASSVVWETLEKY--AQTEPGLLLGEPSSSLRLSNK--------------- 163
R ++ I ++S +W+ + + GL+ S + NK
Sbjct: 439 RNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESE 498
Query: 164 -------------KKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRT 210
K + GY TE+VL D+ ++ KE+ SE++A+A+GL+ P
Sbjct: 499 KIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEP 558
Query: 211 LRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
+ I+KNLRICG+CH K +S IE R II+RD
Sbjct: 559 IIIRKNLRICGDCHETAKAISLIEKRRIIIRD 590
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 61/86 (70%)
Query: 159 RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLR 218
++ ++ K GY+P T VL DL++E KE+ + SE+LA+A+GLISTP TLRI KNLR
Sbjct: 685 KIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLR 744
Query: 219 ICGECHNFIKKLSSIENREIIVRDKT 244
+C +CH IK +S + REIIVRD T
Sbjct: 745 VCNDCHTAIKFISKLVGREIIVRDTT 770
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 5/110 (4%)
Query: 51 EAGKRFEN---DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYD-INPTLEHFLG 106
EA + FE +G+RP+ T+VGV +AC G V++G Q+F+ + +D D I PTL H+
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD-MMKDVDKIIPTLSHYAC 556
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS 156
+VDL+GR + EA+EFI M I+ V W +L + + LG+ ++
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAA 606
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 160 LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
L N+ + G++P TE+V D+++E KE+ Y SE+LAVA GLIST G+ +R+ KNLR+
Sbjct: 585 LGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRV 644
Query: 220 CGECHNFIKKLSSIENREIIVRD 242
CG+CH +K +S I REI+VRD
Sbjct: 645 CGDCHEVMKLISKITRREIVVRD 667
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQK 116
E G+ P+ STF+G++ C G + +G + F +++ Y + T+EH+ +VDL+GR
Sbjct: 406 EKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGM 465
Query: 117 IAEAREFIRNMQIDASSVVWETL 139
+ +A I +M + +++VW L
Sbjct: 466 LDDAYRLICDMPMRPNAIVWGAL 488
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 15/205 (7%)
Query: 50 LEAGKRFENDGVRP----NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFL 105
LE RF N P W+T +++AC G ++ G ES+ +P L
Sbjct: 524 LEEAMRFINGMPFPPDAIGWTT---LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLL 580
Query: 106 G-IVDLYGRLQKIAEAREFIRNMQI----DASSVVWE-TLEKY-AQTEPGLLLGEPSSSL 158
I G+ +A+ R +R + S + W+ L + A E L + + L
Sbjct: 581 SSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKL 640
Query: 159 R-LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNL 217
L+NK D GY P T +V D+++ K K Y SERLA+A+GLI P G+ +R+ KNL
Sbjct: 641 EELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNL 700
Query: 218 RICGECHNFIKKLSSIENREIIVRD 242
R+C +CHN K +SS+ REI+VRD
Sbjct: 701 RVCVDCHNATKHISSVTGREILVRD 725
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G++P+ T GVI+AC G V++G ++F+ +T +Y I P++ H+ ++DL+ R ++ E
Sbjct: 467 GLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEE 526
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE-PSSSLRLSNKKKDAGY 169
A FI M ++ W TL + + L +G+ + SL + AGY
Sbjct: 527 AMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 577
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 56 FENDGVRPNWSTFVGVITACGCFGAVDEGFQ-HFESVTRDYDINPTLEHFLGIVDLYGRL 114
+ G+ P+ T I+AC +++EG Q H +++T T+ + L V LYG+
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSL--VTLYGKC 419
Query: 115 QKIAEAREFIRNMQIDASSVVWETL-EKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMP 171
I ++ M + +V W + YAQ G +++L +K G P
Sbjct: 420 GDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQ------FGRAVETIQLFDKMVQHGLKP 470
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 109/260 (41%), Gaps = 77/260 (29%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
GV P+ TFV +++ C G + G FE + ++ ++P LEH+ +VD+ GR KI E
Sbjct: 433 GVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKE 492
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE-------------PSSSLRLSN---- 162
A + I M S+ +W +L + + +GE P + + +SN
Sbjct: 493 AVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYAD 552
Query: 163 ------------------KKKDAG------------YMPYTEYVLRDLD---------QE 183
KK+AG ++ Y R+ D QE
Sbjct: 553 AKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQE 612
Query: 184 AKEK----PQTY-----------------RSERLAVAYGLISTPPGRTLRIKKNLRICGE 222
A EK P T SERLA Y LI T G +RI KNLR+C +
Sbjct: 613 AIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCAD 672
Query: 223 CHNFIKKLSSIENREIIVRD 242
CH+++K +S + R I++RD
Sbjct: 673 CHSWMKIVSQVTRRVIVLRD 692
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 48/273 (17%)
Query: 18 ALEVMDKLKNI-GIFLDSPDIIELLNVCMDLKLLEAGKR-FENDG----VRPNWSTFVGV 71
AL + ++++ I G+ I L C L+ G R FE+ G ++P + +
Sbjct: 344 ALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCL 403
Query: 72 ITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDA 131
++ G G + ++ +++ D D + LG L+G E E++ + I
Sbjct: 404 VSLLGRAGQLKRAYETIKNMNMDAD-SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462
Query: 132 SSV------VWETL--------------EKYAQTEPGLLLGEPSSSL------------- 158
S + ++ ++ EK EPG+ E + +
Sbjct: 463 SGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKS 522
Query: 159 --------RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRT 210
++S + K GY+P T VL+DL++ KE+ SERLA+AYGLIST PG
Sbjct: 523 KEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSP 582
Query: 211 LRIKKNLRICGECHNFIKKLSSIENREIIVRDK 243
L+I KNLR+C +CH K +S I R+I++RD+
Sbjct: 583 LKIFKNLRVCSDCHTVTKLISKITGRKIVMRDR 615
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 125/288 (43%), Gaps = 52/288 (18%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF----EN 58
NS L + K A+ ++++ +GI + + +L C LL+ G + +
Sbjct: 332 NSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK 391
Query: 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQ 115
DG+ P +V V+ G G ++ + E + I PT + L ++ +
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP----IEPTAAIWKALLNACRMHKNTE 447
Query: 116 KIAEAREFIRNMQID------------ASSVVW--------ETLEKYAQTEPGLLLGEPS 155
A A E + + D AS W + E + EP E
Sbjct: 448 LGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIE 507
Query: 156 SSLRLS---------------------NKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSE 194
+++ + K K+ GY+P T +V+ +DQ+ +E Y SE
Sbjct: 508 NAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSE 567
Query: 195 RLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
++A+A+ L++TPPG T+ IKKN+R+CG+CH IK S + REIIVRD
Sbjct: 568 KIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRD 615
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 52/288 (18%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF----EN 58
N+ LK + + +E+ ++K G+ + + +LN C L++ G+ + +
Sbjct: 287 NAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKE 346
Query: 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT------------------ 100
+ P + ++ G G + E + V + I+PT
Sbjct: 347 SRIEPTDKHYASLVDMLGRAGRLQEALE----VITNMPIDPTESVWGALLTSCTVHKNTE 402
Query: 101 LEHF----------------LGIVDLY---GRLQKIAEAREFIRNM-QIDASSVVW-ETL 139
L F + + + Y GR + A+AR+ +R+ + + + W E
Sbjct: 403 LAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEER 462
Query: 140 EKYAQTEPGLLLGEPSSSL-----RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSE 194
K G E S + L + + AGY+ T YVLR++D + K + Y SE
Sbjct: 463 NKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSE 522
Query: 195 RLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
RLA+A+GLI+ P R +R+ KNLR+CG+CHN IK +S R IIVRD
Sbjct: 523 RLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRD 570
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 53/275 (19%)
Query: 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEN-----DGVRPNWSTFVGVI 72
A++ K++ G+ I LL C L+E G+R+ + DG+ P + ++
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 73 TACGCFGAVDEGFQHFESVTRDYDINP---TLEHFLGIVDLYGRLQKIAEAREFIRNM-- 127
G G +DE E + I P + LG + G ++ + +M
Sbjct: 419 DLLGRSGLLDEA----EEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVP 474
Query: 128 ----------QIDASSVVWETL--------EKYAQTEPGLLL---------------GEP 154
+ AS W + EK + +PG L P
Sbjct: 475 HDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHP 534
Query: 155 SSS------LRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPG 208
+ + +S+K + AGY P T VL +L++E KE Y SE++A A+GLIST PG
Sbjct: 535 KAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPG 594
Query: 209 RTLRIKKNLRICGECHNFIKKLSSIENREIIVRDK 243
+ +RI KNLRIC +CH+ IK +S + R+I VRD+
Sbjct: 595 KPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDR 629
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 58/276 (21%)
Query: 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF-----ENDGVRPNWSTFVGVI 72
A+ V +++ + DS + LL C LLE GK + ++P + ++
Sbjct: 250 AIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 309
Query: 73 TACGCFGAVDEGFQHFESVTRDYDI--------------NPTLEHFLGIVDLYGRLQKIA 118
G G V E ++ ES+ + D+ NP L +Q ++
Sbjct: 310 DLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI--------AIQNLS 361
Query: 119 EAR--EFIRNMQIDASSVVWETLEKYAQ--TEPGLLLGEPSSSLR--------------- 159
+A+ +++ I +S+ WE+ +K + ++ G+ + S L
Sbjct: 362 KAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSH 421
Query: 160 ------------LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPP 207
L K K G++ T+ VL D+ +E KE+ Y SE+LA+AY ++ + P
Sbjct: 422 IETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSP 481
Query: 208 GRTLRIKKNLRICGECHNFIKKLSSIENREIIVRDK 243
G +RI+KN+R+C +CHN+IK +S + NR II+RD+
Sbjct: 482 GTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 517
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 55/78 (70%)
Query: 167 AGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNF 226
AGY P E+ L ++++E KEK + SE+LAVA+G I P G +++ KNLRICG+CH
Sbjct: 563 AGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKA 622
Query: 227 IKKLSSIENREIIVRDKT 244
IK +S IE REIIVRD T
Sbjct: 623 IKFISEIEKREIIVRDTT 640
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKI 117
++ +RP+W TFV V+ AC G V+ G +FES+ RDY + P +H+ +VDL GR K+
Sbjct: 378 DNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKL 437
Query: 118 AEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLS-NKKKDAGYM 170
EA + IR+M + V+ TL + + L E ++ L N + AGY+
Sbjct: 438 EEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYV 491
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 21 VMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80
++D L G F D+ +IE L ++ EA G R + + +G+I A FG
Sbjct: 560 LIDLLCRSGKFSDAESVIESLPFKPTAEIWEA----LLSGCRVHGNMELGIIAADKLFGL 615
Query: 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDAS-SVVWETL 139
+ E + T + G+ +++A R+ +R+ + + W +
Sbjct: 616 IPEH-------------DGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEM 662
Query: 140 EKYAQTEPGLLLGEPSSSL------RLSNKKKDAGYMPYTEYVLRDLDQEA-KEKPQTYR 192
E T P + L + + GY+P T +VL D++ + KE T
Sbjct: 663 ETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTH 722
Query: 193 SERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRDK 243
SE++AVA+GL+ PPG T+RI KNLR CG+CHNF + LS + R+II+RD+
Sbjct: 723 SEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDR 773
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G+RP+ T + V+TAC G VD+G ++F+S+ Y I P +H+ ++DL R K ++
Sbjct: 513 GIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSD 572
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLG 152
A I ++ ++ +WE L + + LG
Sbjct: 573 AESVIESLPFKPTAEIWEALLSGCRVHGNMELG 605
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 30/214 (14%)
Query: 48 KLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDY-DINPTLEHFLG 106
KL EA + EN + P+ +T+ + AC +G++ ESV+++ +++P L
Sbjct: 445 KLNEAHELVENMPINPDLTTWAALYRAC----KAHKGYRRAESVSQNLLELDPELCGSYI 500
Query: 107 IVDLY----GRLQKIAEAREFIRNMQIDASSVVWETLEKYAQ--------------TEPG 148
+D G +Q + E R +I S+ W +E Q E G
Sbjct: 501 FLDKTHASKGNIQDV-EKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIG 559
Query: 149 LLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPG 208
L L E S L+ +K GY P ++ + D+++E KE SE+LA+ G + T PG
Sbjct: 560 LKLDEIIS---LAIQK---GYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPG 613
Query: 209 RTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
T+RI KNLRICG+CH+ +K +S I R+I++RD
Sbjct: 614 TTIRIIKNLRICGDCHSLMKYVSKISQRDILLRD 647
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G +P+ F+ V+TAC VD G F+S+ DY I PTL+H++ +VDL GR K+ E
Sbjct: 389 GEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNE 448
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRD 179
A E + NM I+ W L + + G E S L + G Y+ D
Sbjct: 449 AHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCG-----SYIFLD 503
Query: 180 LDQEAKEKPQTYRSERLAV 198
+K Q RL++
Sbjct: 504 KTHASKGNIQDVEKRRLSL 522
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 24/212 (11%)
Query: 48 KLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLG 106
+L A K ++ ++P+ S + +++AC G VD G E + +++ P + + +
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHL---FEVEPEHVGYHVL 659
Query: 107 IVDLY---GRLQKIAEAREFIR-----------NMQIDASSVVWETLEKYAQTEPGLLLG 152
+ ++Y G+ + + E R +M++D V+ T QT P +
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGN---QTHP--MYE 714
Query: 153 EPSSSLR-LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTL 211
E L L K K GY+P +VL+D++ + KE SERLA+A+ LI+TP T+
Sbjct: 715 EMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTI 774
Query: 212 RIKKNLRICGECHNFIKKLSSIENREIIVRDK 243
RI KNLR+CG+CH+ K +S I REIIVRD
Sbjct: 775 RIFKNLRVCGDCHSVTKFISKITEREIIVRDS 806
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 54 KRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGR 113
K ++GV+P+ TFV +++AC G VDEG FE + DY I P+L+H+ +VD+YGR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600
Query: 114 LQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYT 173
++ A +FI++M + + +W L + + LG+ +S + + GY
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY---- 656
Query: 174 EYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
+L ++ A + +A GL TP ++ + + +
Sbjct: 657 HVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEV 702
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 125/286 (43%), Gaps = 47/286 (16%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF-----E 57
N+ + R + AL + +K G+ D ++ +L+ C L++ G+++ +
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKI 117
+ GV PN + ++ G G +++ +++ + D LG ++G +
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA-AIWGTLLGASRVHGNTELA 597
Query: 118 AEAREFIRNMQ------------IDASSVVWETL--------EKYAQTEPGLLLGEPSSS 157
A + I M+ + ASS W + +K + PG E +
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657
Query: 158 LR---------------------LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERL 196
L + K AGY+ T VL D+++E KE+ Y SERL
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERL 717
Query: 197 AVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
AVAYG++ GR +R+ KNLR+C +CHN IK ++ I R II+RD
Sbjct: 718 AVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRD 763
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 165 KDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECH 224
++AGY P +VL D+D+E K + SERLAVAYGL+ P G +R+ KNLR+CG+CH
Sbjct: 609 REAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCH 668
Query: 225 NFIKKLSSIENREIIVRD 242
IK +S + REII+RD
Sbjct: 669 AAIKLISKVTEREIILRD 686
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITA 74
VKA L V D+ + I + + I + + + L+ + G PN T + ++TA
Sbjct: 383 VKAKL-VFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441
Query: 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSV 134
C G ++EG + FES+ + + PT+EH+ VD+ GR ++ +A E I +M I +
Sbjct: 442 CSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDAT 501
Query: 135 VWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAG 168
VW L +T L L E ++ N+ +AG
Sbjct: 502 VWGALLGACKTHSRLDLAEVAAKKLFENEPDNAG 535
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 111/265 (41%), Gaps = 78/265 (29%)
Query: 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQK 116
E + N F+ ++ AC G D+G + F+ + Y P L+H+ +VDL GR
Sbjct: 371 EQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 430
Query: 117 IAEAREFIRNMQIDASSVVWETL-----------------EKYAQTEPG-----LLLG-- 152
+ +A IR+M I V+W+TL ++ Q +P +LL
Sbjct: 431 LDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANV 490
Query: 153 -----------EPSSSLRLSNKKKDAGYMPYTEY----------------------VLRD 179
E S+R N KK+AG + + E+ L++
Sbjct: 491 HASAKRWRDVSEVRKSMRDKNVKKEAG-ISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 549
Query: 180 LDQEAK---EKPQT-----------------YRSERLAVAYGLISTPPGRTLRIKKNLRI 219
L E K KP T SE+LAVA+ L+ P G +RI KNLR+
Sbjct: 550 LTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRV 609
Query: 220 CGECHNFIKKLSSIENREIIVRDKT 244
C +CH K +S I+NREI +RD +
Sbjct: 610 CSDCHVAFKYISVIKNREITLRDGS 634
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 160 LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
L+ K +AGY+ T V D+D+E KE SE+LA+A+G+++T PG T+ + KNLR+
Sbjct: 559 LNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRV 618
Query: 220 CGECHNFIKKLSSIENREIIVRD 242
C +CHN IK +S I +RE +VRD
Sbjct: 619 CSDCHNVIKLISKIVDREFVVRD 641
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
Query: 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFV 69
C+ V+ A + D++KN + + I K LE + GVRPN+ TFV
Sbjct: 333 CKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFV 392
Query: 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQI 129
V+ AC G EG++ F ++ + + P LEH+ +VDL GR + +A + I+ M++
Sbjct: 393 SVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKM 452
Query: 130 DASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQ 189
S++W +L + + L E S + + GY ++ D A
Sbjct: 453 KPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYAD----AGRWKD 508
Query: 190 TYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFI 227
R + GL+ PPG +L L + GE H F+
Sbjct: 509 VERVRMIMKNRGLVK-PPGFSL-----LELNGEVHVFL 540
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 114/273 (41%), Gaps = 78/273 (28%)
Query: 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESV-TRDYDINPTLEHF---- 104
+EA G+ P T G+++AC G V EG F+ + + ++ I P L H+
Sbjct: 303 IEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVV 362
Query: 105 -------------------------------LGIVDLYGRLQ------------KIAEAR 121
LG ++G ++ K EA
Sbjct: 363 DLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAG 422
Query: 122 EFIRNMQIDASSVVWETL--------EKYAQTEPGLLLGEPSSSLR-------------- 159
+++ + ++ WE + EK T+PG E ++
Sbjct: 423 DYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEE 482
Query: 160 -------LSNKKKDAGYMPYTEYVLRDLD-QEAKEKPQTYRSERLAVAYGLISTPPGRTL 211
++ + K AGY+ L +L+ +E K Y SE+LA+A+G++ TPPG T+
Sbjct: 483 IYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTI 542
Query: 212 RIKKNLRICGECHNFIKKLSSIENREIIVRDKT 244
R+ KNLR C +CHNF K +S + +R +IVRD++
Sbjct: 543 RVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRS 575
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 61/280 (21%)
Query: 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND-----GVRPNWS------ 66
AL + D+++ IG LD ++ +L C +++ G + N GV P
Sbjct: 563 ALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLV 622
Query: 67 --------------------------TFVGVITACGCFGAVDEGFQHFESVTR---DYDI 97
+V ++ C G V+ G E +T ++D
Sbjct: 623 DLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDG 682
Query: 98 NPTLEHFLGIVDLY---GRLQKIAEAREFIRNMQIDA-SSVVWETLEKYAQTEPGLLLGE 153
+ TL + +LY GR + + R +R+ + W K T +G+
Sbjct: 683 SYTL-----LSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTT---FFVGD 734
Query: 154 PSSS---------LRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLIS 204
+ L + KD GY+P T + L D+D E K+ SE+LA+AYG+++
Sbjct: 735 KTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILT 794
Query: 205 TPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRDKT 244
TP G +RI KNLR+CG+CH +S I + +II+RD +
Sbjct: 795 TPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSS 834
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 124/287 (43%), Gaps = 73/287 (25%)
Query: 17 AALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGK--------------RFENDGV- 61
A+ ++ +++ IGI D + LL+ C +L+ G+ + E+ G
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 62 ----------------------RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP 99
P+ + ++ AC G V+ G E++ + NP
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 572
Query: 100 TLEHFLGIVDLY---GRLQKIAEAREFIRN---------MQIDASSVVWETL-------- 139
++ + ++Y GR ++A+ R + + I+ SVV E +
Sbjct: 573 G--SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 630
Query: 140 --EKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLA 197
E Y E +L E AG++P T VL+++++E KE + SE+LA
Sbjct: 631 NREIYGMLEEMEVLLE------------KAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 198 VAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRDKT 244
+A+GLIST PG L I KNLR+C CH K +S I REII RD+T
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRT 725
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109
LE K VRP+ ST V V++AC G+++ G Q D+ L+ ++D
Sbjct: 251 LELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALID 309
Query: 110 LYGRLQKIAEAREFIRNMQIDASSVVWETL 139
LY + ++ A + + W TL
Sbjct: 310 LYSKCGELETACGLFERLPYK-DVISWNTL 338
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 37 IIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYD 96
++++L C LK EA + E V+PN ++ +++AC VD G + + + D
Sbjct: 470 MVDILGRCGKLK--EAEELIERMVVKPNEMVWLALLSACRMHSDVDRG-EKAAAAIFNLD 526
Query: 97 INPTLEHFLGIVDLY---GRLQKIAEAR-EFIRNMQIDASSVVWETL-----EKYAQTEP 147
+ + L + ++Y GR +++ R + +N + W + E ++ +P
Sbjct: 527 SKSSAAYVL-LSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQP 585
Query: 148 GLL-LGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTP 206
+ E LR K K+ GY P L D++ E KE+ Y SERLA+A+GLI+T
Sbjct: 586 HCSRIYEKLEFLR--EKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTV 643
Query: 207 PGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
G + + KNLR+C +CH IK +S + REI++RD
Sbjct: 644 EGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRD 679
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYD-INPTLEHFLGIVDLYGRLQKIAEAR 121
P+ TF G+++AC G +++G + F ++ + I+ ++H+ +VD+ GR K+ EA
Sbjct: 425 PDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAE 484
Query: 122 EFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLS-NKKKDAGYM 170
E I M + + +VW L + + GE +++ + + K A Y+
Sbjct: 485 ELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYV 534
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 112 GRLQKIAEAREFIRNMQIDAS-SVVWETLEK--YAQTEPGLLLGEPSSSL-----RLSNK 163
GR +AE R+ ++ + S W +E +A T G+ S+ L
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGL 608
Query: 164 KKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGEC 223
++AGY P Y L D+D+E K Y SERLAVAY L+ G +R+ KNLR+C +C
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDC 668
Query: 224 HNFIKKLSSIENREIIVRD 242
H IK +S ++ REII+RD
Sbjct: 669 HTAIKIISKVKEREIILRD 687
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 62 RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAR 121
+PN TFV ++AC G V+EG + +ES+ + + P H+ +VD+ GR + EA
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM 489
Query: 122 EFIRNMQIDASSVVWETLEKYAQTEPGLLLGE 153
E I +M ++ + VW +L +T L + E
Sbjct: 490 EMIDSMTVEPDAAVWGSLLGACRTHSQLDVAE 521
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 16 KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND-----GVRP---NWST 67
+ ALE D++ G + I +L C + +E G + N V+P +++
Sbjct: 421 REALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTC 480
Query: 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE-------- 119
VG+++ G F E F + D TL + + Y +K+AE
Sbjct: 481 IVGLLSKAGMFKDA-EDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPN 539
Query: 120 -AREFIRNMQIDASSVVWETLEKY--------AQTEPGL-----------LLGE----PS 155
+ ++ I A S WE + K + EPG+ L E P
Sbjct: 540 DSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPE 599
Query: 156 SSL------RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGR 209
+L + +K K GY P D+D+E +E +Y SE+LAVAYGLI TP
Sbjct: 600 ITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKS 659
Query: 210 TLRIKKNLRICGECHNFIKKLSSIENREIIVRD 242
L + KN+RIC +CH+ IK +S I R I++RD
Sbjct: 660 PLYVTKNVRICDDCHSAIKLISKISKRYIVIRD 692
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 46/271 (16%)
Query: 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF-----ENDGVRPNWSTFVGVI 72
A++++ + G+ + I + C +++ G R + GV P+ + V+
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVV 661
Query: 73 TACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ--KIAE----------A 120
G G + E +Q + RD++ LG ++ L+ +IA A
Sbjct: 662 DLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 721
Query: 121 REFIRNMQIDASSVVWETL--------EKYAQTEPG------------LLLGEPS--SSL 158
++ I +S+ +W+ E+ + EPG + G+ S S
Sbjct: 722 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSE 781
Query: 159 RLSN-------KKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTL 211
+LS + + GY+P T VL +++++ KE SE+LA+A+G+++T PG +
Sbjct: 782 KLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTII 841
Query: 212 RIKKNLRICGECHNFIKKLSSIENREIIVRD 242
R+ KNLR+C +CH K +S I +REII+RD
Sbjct: 842 RVAKNLRVCNDCHLATKFISKIVDREIILRD 872
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 57 ENDGVRPNWSTFVGVITACGCFGAVD-----EGFQHFESVTRDYDINPTLEHFLGIVDLY 111
E+ G+ N +T GV+ AC GA GF + RD + TL +D+Y
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL------MDMY 450
Query: 112 GRLQKIAEAREFIRNMQIDASSVVWETL 139
RL KI A M+ D V W T+
Sbjct: 451 SRLGKIDIAMRIFGKME-DRDLVTWNTM 477
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%)
Query: 168 GYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFI 227
GY+ T VL D+D+E K + SERLAVA+G+I+T PG T+R+ KN+RIC +CH I
Sbjct: 623 GYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAI 682
Query: 228 KKLSSIENREIIVRDKT 244
K +S I REIIVRD +
Sbjct: 683 KFISKITEREIIVRDNS 699
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 47 LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLG 106
+ L E KR GV+PN FV V+TAC G VDE + +F S+T+ Y +N LEH+
Sbjct: 429 VSLFEEMKR---QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE 153
+ DL GR K+ EA FI M ++ + VW TL L L E
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAE 532
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 61 VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEA 120
++P+ + V+ C +G +D + + + + NP ++ + ++Y K E
Sbjct: 484 MKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVT--YVTMANIYAAAGKWEEE 541
Query: 121 REFIRNMQ----IDASSVVWETLEKYAQTEPGLLLGEPSSS-----LR-LSNKKKDAGYM 170
+ + MQ W +++ P + LR L K K+ GY+
Sbjct: 542 GKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYV 601
Query: 171 PYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKL 230
P T VL D++ E KE+ Y SE+LAVA+ ++ST G +++ KNLR C +CH IK +
Sbjct: 602 PATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFI 661
Query: 231 SSIENREIIVRDKT 244
S+I R+I VRD T
Sbjct: 662 SNITKRKITVRDST 675
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 51 EAGKRFE---NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGI 107
EA K F+ G +P+ TFV V++AC G V++G + F S+T + ++ T +H+ +
Sbjct: 403 EALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCL 462
Query: 108 VDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS 156
VDL R + + + I M + S +W ++ T + L E ++
Sbjct: 463 VDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAA 511
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 13 REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVI 72
R V+ E+ D + I L + ++++ LE + + + P+ + ++
Sbjct: 483 RLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLL 542
Query: 73 TACGCFGAVDEGFQHFESVTRD-YDINPTLEHFLGIV-DLY---GRLQKIAEAREFIRNM 127
+AC V + E +TR +I P E L ++ +LY G+ ++ E + +++M
Sbjct: 543 SAC----KVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDM 598
Query: 128 QIDAS-SVVWETLEKYAQT-EPGLLLGEPSSSLRLSN------KKKDAGYMPYTEYVLRD 179
++ + ++ W + K T G L P+S L N K KD GY+ V +D
Sbjct: 599 KLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQD 658
Query: 180 LDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREII 239
+++ AKE+ SE+LA+A+ + G ++RI KNLR+C +CH++IK +S + REII
Sbjct: 659 MEETAKERSLHQHSEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREII 717
Query: 240 VRD 242
RD
Sbjct: 718 CRD 720
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 160 LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRI 219
+S K K AGY+P VL D+D+E KEK SE+LA+ +GLI+T G +R+ KNLRI
Sbjct: 528 ISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRI 587
Query: 220 CGECHNFIKKLSSIENREIIVRDK 243
C +CHNF K S + RE+ +RDK
Sbjct: 588 CVDCHNFAKIFSKVFEREVSLRDK 611
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 61 VRPNWSTFVGVITACGCFGAVDEGFQHFES-VTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
V+P+ T + V++ C D G F+ V +Y P EH+ IVD+ GR +I E
Sbjct: 352 VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDE 411
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAG 168
A EFI+ M ++ V +L + + +GE + + ++AG
Sbjct: 412 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAG 460
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR 62
+S L + ++K A E+ + L + + I + +D + LE R ++G+
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS 251
Query: 63 PNWSTFVGVITACGCFGAVDEGFQ-HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAR 121
PN+ T+ ++TA +D G Q H + R+ L++ L +D+Y + ++ AR
Sbjct: 252 PNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL--IDMYSKCGNLSYAR 309
Query: 122 EFIRNMQIDASSVVWETL 139
NM + +++ W +
Sbjct: 310 RLFDNMP-ERTAISWNAM 326
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 47 LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLG 106
+++LE + +GV+PN T+V +++AC G V EG++HF S+ D+ I P +EH+
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYAC 616
Query: 107 IVDLYGRLQKIAEAREFIRNMQIDASSVVWETL----EKYAQTEPGLLLG---------E 153
+VDL R + +A EFI M A +VW T ++ TE G L E
Sbjct: 617 MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNE 676
Query: 154 PSSSLRLSNKKKDAG 168
P++ ++LSN AG
Sbjct: 677 PAAYIQLSNIYACAG 691
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 159 RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQT----YRSERLAVAYGLISTPPGRTLRIK 214
RL + K GY+P T+ VL L++E E + SE++AVA+GLIST R +R+
Sbjct: 745 RLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVF 804
Query: 215 KNLRICGECHNFIKKLSSIENREIIVRD 242
KNLR+CG+CHN +K +S++ REI++RD
Sbjct: 805 KNLRVCGDCHNAMKYISTVSGREIVLRD 832
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE 119
G++PN TF V+TAC G V+EG F S+ RDY++ PT+EH+ IVDL GR + E
Sbjct: 343 GIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDE 402
Query: 120 AREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLR- 178
A+ FI+ M + ++V+W L K + + LGE + ++ G YV +
Sbjct: 403 AKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG-----RYVHKA 457
Query: 179 DLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFI 227
++ K+ + + RL G+ P T+ ++ G H F+
Sbjct: 458 NIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE------GTTHEFL 500
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 49 LLEAGKRF-ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT----LEH 103
LL+ KRF + ++PN + ++ AC ++ G + E + I+P H
Sbjct: 399 LLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA---IDPYHGGRYVH 455
Query: 104 FLGIVDLYGRLQKIAEAREFIRNMQI----DASSVVWE--TLEKYAQTEPGLLLGEPSSS 157
I + + K AE R ++ + S++ E T E A + + S
Sbjct: 456 KANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSK 515
Query: 158 LRLSNKK-KDAGYMPYTEYVLRDL-DQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKK 215
R+ +K ++ GY+P E +L DL D + +E SE+LA+ YGLI T PG +RI K
Sbjct: 516 WRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMK 575
Query: 216 NLRICGECHNFIKKLSSIENREIIVRDKT 244
NLR+C +CH K +S I R+I++RD+T
Sbjct: 576 NLRVCKDCHKVTKLISKIYKRDIVMRDRT 604
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR 62
NS +K + ++ AL + K+ + I + M+ + L+ +N V
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 63 PNWSTFVGVITACGCFGAVDEG--FQHFESVTRDYDINPTLEHFLG--IVDLYGRLQKIA 118
P+ + ++AC GA+++G + + TR ++ LG ++D+Y + ++
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTR-----IRMDSVLGCVLIDMYAKCGEME 299
Query: 119 EAREFIRNMQIDASSVVWETL 139
EA E +N++ S W L
Sbjct: 300 EALEVFKNIK-KKSVQAWTAL 319
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQK 116
E G+RP+ TF+ +I++C G VDEG + F S+T DY I P EH+ +VDL+GR +
Sbjct: 636 EKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGR 695
Query: 117 IAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGY 169
+ EA E +++M + VW TL + + L E +SS + ++GY
Sbjct: 696 LTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGY 748
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 165 KDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECH 224
++AGY+ T+ VL DL+++ KE +Y SE+LA+A+ L+ T PG +RI KNLRICG+CH
Sbjct: 478 REAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCH 537
Query: 225 NFIKKLSSIENREIIVRD 242
+K +S + +REI+VRD
Sbjct: 538 LVMKMISKLFSREIVVRD 555
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKI 117
+D + PN TFVG++ AC G ++EG +F+ + ++ I P+++H+ +VDLYGR I
Sbjct: 295 SDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLI 354
Query: 118 AEAREFIRNMQIDASSVVWETL 139
EA FI +M ++ ++W +L
Sbjct: 355 KEAESFIASMPMEPDVLIWGSL 376
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 39 ELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDIN 98
E L++ +++L + + F VRPN T V++ACG GA+++G + + Y +
Sbjct: 177 EALDLFREMQLPKPNEAF----VRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVE 231
Query: 99 PTLEHFLGIVDLYGRLQKIAEAREFIRNM----QIDASSVVWETLEKYAQTE 146
+ ++D+Y + + A+ + + A S + L Y T+
Sbjct: 232 IDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTD 283
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND----GVRPNWSTFV 69
E ALE+ DKL++ GI D + L C L+E G N+ GV N +
Sbjct: 288 EAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYG 347
Query: 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQ 128
V+ G + E S++ D P L + LG ++Y ++ A I+ M
Sbjct: 348 CVVDLLSRAGRLREAHDIICSMSMIPD--PVLWQSLLGASEIYSDVEMAEIASREIKEMG 405
Query: 129 ID------------ASSVVWETL--------EKYAQTEPGLLLGEPSSSLR--------- 159
++ A+ W+ + K + PGL E ++
Sbjct: 406 VNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSH 465
Query: 160 ------------LSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPP 207
+ K ++ GY+ T VL D+ +E KE Y SE+LAVAYGL+
Sbjct: 466 EQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDG 525
Query: 208 G---RTLRIKKNLRICGECHNFIKKLSSIENREIIVRDKT 244
+R+ NLRICG+CH K +S I REIIVRD+
Sbjct: 526 ADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRV 565
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109
+E KR E +G+R + T V + AC G V EG F + D I +D
Sbjct: 195 MELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSN-----AAID 249
Query: 110 LYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGY 169
+Y + + +A + S V W T+ + GE +L + +K +D G
Sbjct: 250 MYSKCGFVDKAYQVFEQFTGKKSVVTWNTM-----ITGFAVHGEAHRALEIFDKLEDNGI 304
Query: 170 MP 171
P
Sbjct: 305 KP 306
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 48 KLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGI 107
K L+ ++ ++G+ PN+ TFVGV++AC G V++G + FE + R + I P EH++ +
Sbjct: 639 KALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCM 697
Query: 108 VDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDA 167
V L GR ++ +ARE I M +++VW +L + L E ++ + + + KD+
Sbjct: 698 VSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDS 757
Query: 168 G--YMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHN 225
G M Y + + EAK+ + + E G++ P + I K E H
Sbjct: 758 GSFTMLSNIYASKGMWTEAKKVRERMKVE------GVVKEPGRSWIGINK------EVHI 805
Query: 226 FIKK 229
F+ K
Sbjct: 806 FLSK 809
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 47/271 (17%)
Query: 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR-----FENDGVRPNWSTFVGVI 72
A+E+ D + G+ D + L C L++ GK + GV P + ++
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 73 TACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM----- 127
G G ++E Q E + + + + L + G ++ A A E I+ +
Sbjct: 615 DLLGRAGLLEEAVQLIEDMPMEPN-DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 128 -------QIDASSVVWETLEKY--AQTEPGLLLGEPSSSLRL------------------ 160
+ AS+ W + K + E GL +SS+++
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMP 733
Query: 161 ---------SNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTL 211
S + G++P VL D+D++ K + SE+LA+AYGLIS+ G T+
Sbjct: 734 NIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793
Query: 212 RIKKNLRICGECHNFIKKLSSIENREIIVRD 242
RI KNLR+C +CH+F K S + NREII+RD
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRD 824
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 163 KKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGE 222
K + GY+P T V D++ E KE ++ SE+LA+A+GLI PG +R+ KNLR C +
Sbjct: 487 KIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDD 546
Query: 223 CHNFIKKLSSIENREIIVRDK 243
CH F K +SS+ + EII+RDK
Sbjct: 547 CHAFSKFVSSLTSTEIIMRDK 567
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDIN--PTLEHFLGIVDLYGRL 114
+N+G+RPN+ TF+GV++AC G V+EG ++F + + D N P EH+ +VDL GR
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRS 362
Query: 115 QKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE 153
+ EA EFI+ M ++ + +W L ++LG+
Sbjct: 363 GLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQ 401
>sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1
SV=1
Length = 475
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 62/249 (24%)
Query: 55 RFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL 114
RF+ +G +PN F V + C G V EG F+++ R+Y I P++EH+ + +
Sbjct: 210 RFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATS 269
Query: 115 QKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSL-------RLSNKKKDA 167
+ EA F+ M ++ S VWETL ++ + LG+ + L RL +K A
Sbjct: 270 GHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLDATRL-DKVSSA 328
Query: 168 GYM-----------------PYTEYVLRDLD--------------------QEAKEKPQT 190
G + PY R +D +E P T
Sbjct: 329 GLVATKASDFVKKEPSTRSEPYFYSTFRPVDSSHPQMNIIYETLMSLRSQLKEMGYVPDT 388
Query: 191 --YRS---------------ERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSI 233
YRS E +AV L+ + P + + N+RI G+CH+ +K +S I
Sbjct: 389 RYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITLLTNIRIVGDCHDMMKLMSVI 448
Query: 234 ENREIIVRD 242
R++I RD
Sbjct: 449 TGRDMIKRD 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,460,243
Number of Sequences: 539616
Number of extensions: 3859213
Number of successful extensions: 10803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 10153
Number of HSP's gapped (non-prelim): 667
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)