Query 043265
Match_columns 245
No_of_seqs 166 out of 2313
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7.3E-46 1.6E-50 340.1 22.9 245 1-245 292-682 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-43 4.4E-48 330.5 21.8 239 1-245 526-844 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.6E-36 1.9E-40 279.0 12.2 225 1-237 474-714 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.4E-35 9.4E-40 274.3 12.3 228 1-241 509-753 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 7.5E-34 1.6E-38 266.2 13.9 227 1-241 154-458 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.4E-33 9.5E-38 255.8 14.7 178 1-184 125-336 (697)
7 PF13041 PPR_2: PPR repeat fam 99.6 6.4E-15 1.4E-19 89.0 5.9 50 63-113 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.5 1.4E-14 3.1E-19 87.4 5.8 46 1-46 5-50 (50)
9 KOG4422 Uncharacterized conser 99.5 3.9E-13 8.5E-18 112.1 9.7 231 1-238 209-464 (625)
10 PF12854 PPR_1: PPR repeat 99.2 4E-11 8.6E-16 65.8 4.3 33 96-128 2-34 (34)
11 PF12854 PPR_1: PPR repeat 99.1 6.3E-11 1.4E-15 65.0 3.7 34 59-92 1-34 (34)
12 KOG4422 Uncharacterized conser 99.0 2.4E-09 5.3E-14 89.8 9.6 170 10-185 126-324 (625)
13 PRK11788 tetratricopeptide rep 99.0 7.2E-09 1.6E-13 89.1 13.0 158 2-163 110-281 (389)
14 PF14432 DYW_deaminase: DYW fa 99.0 4.6E-10 1E-14 79.7 4.1 74 166-245 29-111 (116)
15 PRK11788 tetratricopeptide rep 99.0 1E-08 2.3E-13 88.2 12.6 160 2-162 144-313 (389)
16 TIGR02917 PEP_TPR_lipo putativ 98.9 2.5E-08 5.5E-13 93.6 13.9 150 3-156 639-793 (899)
17 TIGR00756 PPR pentatricopeptid 98.9 3.7E-09 7.9E-14 58.2 4.5 34 1-34 2-35 (35)
18 TIGR02917 PEP_TPR_lipo putativ 98.7 1.5E-07 3.3E-12 88.4 13.4 121 3-127 571-695 (899)
19 PF13812 PPR_3: Pentatricopept 98.7 1.8E-08 4E-13 55.1 3.9 32 1-32 3-34 (34)
20 PF01535 PPR: PPR repeat; Int 98.6 6.8E-08 1.5E-12 51.6 3.4 30 1-30 2-31 (31)
21 KOG4318 Bicoid mRNA stability 98.5 4.9E-08 1.1E-12 88.4 2.9 88 20-119 11-101 (1088)
22 TIGR00756 PPR pentatricopeptid 98.5 1.3E-07 2.9E-12 51.8 3.6 35 66-101 1-35 (35)
23 PF13812 PPR_3: Pentatricopept 98.4 3.7E-07 8E-12 49.8 3.5 33 66-99 2-34 (34)
24 TIGR02521 type_IV_pilW type IV 98.4 1.7E-05 3.8E-10 62.2 14.5 153 3-156 35-192 (234)
25 KOG4318 Bicoid mRNA stability 98.4 1.6E-06 3.5E-11 78.8 9.0 145 1-150 27-288 (1088)
26 PF01535 PPR: PPR repeat; Int 98.2 1.3E-06 2.9E-11 46.4 3.2 28 66-93 1-28 (31)
27 TIGR00990 3a0801s09 mitochondr 98.2 2.5E-05 5.4E-10 71.6 12.9 219 4-235 336-570 (615)
28 TIGR02521 type_IV_pilW type IV 98.2 9.4E-05 2E-09 58.0 14.3 150 2-155 68-225 (234)
29 PF13429 TPR_15: Tetratricopep 98.2 2.4E-05 5.2E-10 64.5 10.8 152 3-156 114-271 (280)
30 PF08579 RPM2: Mitochondrial r 98.1 6E-05 1.3E-09 52.4 9.1 72 4-75 30-114 (120)
31 PRK15174 Vi polysaccharide exp 98.0 0.0002 4.3E-09 66.2 14.6 143 6-151 117-264 (656)
32 PF13429 TPR_15: Tetratricopep 98.0 7.4E-06 1.6E-10 67.5 4.6 138 12-151 57-198 (280)
33 PF10037 MRP-S27: Mitochondria 97.9 0.00018 3.9E-09 62.2 11.8 125 21-146 50-186 (429)
34 PRK09782 bacteriophage N4 rece 97.9 0.00042 9E-09 66.4 14.9 152 8-164 551-710 (987)
35 PRK15174 Vi polysaccharide exp 97.8 0.00061 1.3E-08 63.0 14.7 155 6-164 219-385 (656)
36 PRK09782 bacteriophage N4 rece 97.8 0.00032 6.9E-09 67.2 12.8 152 8-164 518-676 (987)
37 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00093 2E-08 57.5 13.2 120 4-130 174-297 (395)
38 PRK10747 putative protoheme IX 97.7 0.0014 2.9E-08 57.0 14.4 149 3-156 191-351 (398)
39 PRK12370 invasion protein regu 97.7 0.0013 2.8E-08 59.6 14.5 77 14-91 319-398 (553)
40 PF10037 MRP-S27: Mitochondria 97.7 0.00022 4.9E-09 61.7 8.7 110 4-114 71-186 (429)
41 TIGR00990 3a0801s09 mitochondr 97.7 0.002 4.3E-08 59.2 14.9 157 2-162 368-539 (615)
42 PF06239 ECSIT: Evolutionarily 97.6 0.00057 1.2E-08 53.3 9.2 86 31-117 44-154 (228)
43 KOG2003 TPR repeat-containing 97.6 0.00071 1.5E-08 58.1 10.4 101 61-164 588-693 (840)
44 PRK10049 pgaA outer membrane p 97.5 0.0025 5.5E-08 60.0 14.2 157 6-164 244-426 (765)
45 PF06239 ECSIT: Evolutionarily 97.5 0.0017 3.6E-08 50.7 10.7 92 2-93 50-167 (228)
46 PRK14574 hmsH outer membrane p 97.5 0.0018 4E-08 60.9 12.9 151 8-164 43-202 (822)
47 PF12921 ATP13: Mitochondrial 97.5 0.00099 2.1E-08 48.0 8.6 93 34-145 2-100 (126)
48 PF12921 ATP13: Mitochondrial 97.5 0.0022 4.7E-08 46.2 9.8 27 129-155 48-74 (126)
49 PRK11447 cellulose synthase su 97.4 0.0013 2.8E-08 64.8 11.1 147 8-156 360-518 (1157)
50 KOG4626 O-linked N-acetylgluco 97.4 0.0032 6.8E-08 56.3 12.1 159 2-164 323-489 (966)
51 PRK10747 putative protoheme IX 97.4 0.0095 2.1E-07 51.7 15.1 42 195-236 313-357 (398)
52 PF04733 Coatomer_E: Coatomer 97.4 0.0012 2.5E-08 54.8 8.9 115 42-161 110-231 (290)
53 PRK14574 hmsH outer membrane p 97.3 0.0067 1.4E-07 57.3 13.7 159 5-163 298-482 (822)
54 PRK11447 cellulose synthase su 97.3 0.014 3.1E-07 57.5 16.3 91 63-156 601-694 (1157)
55 KOG3616 Selective LIM binding 97.2 0.001 2.2E-08 60.3 7.1 129 7-151 740-868 (1636)
56 KOG1126 DNA-binding cell divis 97.2 0.0028 6E-08 56.6 9.6 120 1-125 423-547 (638)
57 TIGR00540 hemY_coli hemY prote 97.2 0.014 3.1E-07 50.8 13.6 150 4-156 192-358 (409)
58 KOG4626 O-linked N-acetylgluco 97.1 0.0027 5.9E-08 56.6 8.2 96 66-164 287-387 (966)
59 PRK10049 pgaA outer membrane p 97.1 0.03 6.4E-07 52.9 15.6 144 5-153 21-170 (765)
60 PF08579 RPM2: Mitochondrial r 97.1 0.01 2.3E-07 41.4 9.2 76 69-145 29-116 (120)
61 PRK12370 invasion protein regu 97.0 0.0095 2.1E-07 54.1 11.2 142 4-148 343-490 (553)
62 COG5010 TadD Flp pilus assembl 97.0 0.029 6.4E-07 44.9 12.4 115 39-156 105-225 (257)
63 smart00299 CLH Clathrin heavy 96.9 0.087 1.9E-06 38.4 15.1 126 3-145 11-137 (140)
64 KOG1126 DNA-binding cell divis 96.9 0.012 2.5E-07 52.8 10.8 153 7-164 361-522 (638)
65 PF05843 Suf: Suppressor of fo 96.9 0.0067 1.5E-07 50.1 9.0 126 2-128 4-134 (280)
66 KOG1840 Kinesin light chain [C 96.9 0.031 6.6E-07 49.8 12.8 155 2-156 286-473 (508)
67 COG3071 HemY Uncharacterized e 96.8 0.055 1.2E-06 45.9 13.1 153 3-156 191-384 (400)
68 PF07035 Mic1: Colon cancer-as 96.8 0.075 1.6E-06 40.1 12.6 121 18-148 13-135 (167)
69 PF14559 TPR_19: Tetratricopep 96.7 0.0088 1.9E-07 37.6 6.4 62 77-141 3-66 (68)
70 KOG1840 Kinesin light chain [C 96.7 0.017 3.7E-07 51.4 10.0 230 4-234 204-477 (508)
71 PF09976 TPR_21: Tetratricopep 96.6 0.073 1.6E-06 39.2 11.8 119 3-125 16-142 (145)
72 KOG1129 TPR repeat-containing 96.6 0.014 3.1E-07 48.4 8.0 149 4-156 228-381 (478)
73 COG3063 PilF Tfp pilus assembl 96.5 0.093 2E-06 41.5 12.0 144 7-151 43-191 (250)
74 KOG0547 Translocase of outer m 96.5 0.024 5.1E-07 49.4 9.3 47 8-56 124-171 (606)
75 TIGR00540 hemY_coli hemY prote 96.4 0.12 2.6E-06 45.1 13.4 124 33-156 262-393 (409)
76 cd00189 TPR Tetratricopeptide 96.4 0.014 3E-07 37.9 6.0 59 66-126 35-93 (100)
77 PF04733 Coatomer_E: Coatomer 96.3 0.14 2.9E-06 42.6 12.7 134 8-149 111-251 (290)
78 COG3071 HemY Uncharacterized e 96.3 0.12 2.5E-06 44.0 12.1 115 4-127 268-387 (400)
79 TIGR03302 OM_YfiO outer membra 96.3 0.27 6E-06 39.0 13.9 150 4-156 38-226 (235)
80 cd05804 StaR_like StaR_like; a 96.3 0.23 5E-06 42.0 14.3 145 8-156 52-209 (355)
81 PF04840 Vps16_C: Vps16, C-ter 96.2 0.19 4.2E-06 42.2 13.2 109 3-128 181-289 (319)
82 TIGR02552 LcrH_SycD type III s 96.2 0.28 6.1E-06 35.1 12.7 104 35-140 18-125 (135)
83 PRK11189 lipoprotein NlpI; Pro 96.2 0.22 4.8E-06 41.4 13.4 112 13-127 40-158 (296)
84 cd00189 TPR Tetratricopeptide 96.1 0.11 2.4E-06 33.5 9.5 91 2-93 3-96 (100)
85 PRK15359 type III secretion sy 96.1 0.034 7.4E-07 41.0 7.4 114 20-140 14-132 (144)
86 PRK15359 type III secretion sy 96.1 0.14 3E-06 37.7 10.7 84 70-156 29-115 (144)
87 KOG2003 TPR repeat-containing 96.1 0.36 7.8E-06 42.0 14.1 133 14-150 573-711 (840)
88 PF05843 Suf: Suppressor of fo 96.0 0.09 2E-06 43.4 10.1 127 35-164 2-140 (280)
89 COG5010 TadD Flp pilus assembl 96.0 0.45 9.7E-06 38.3 13.3 121 5-128 106-229 (257)
90 PF09295 ChAPs: ChAPs (Chs5p-A 96.0 0.11 2.3E-06 45.0 10.6 120 35-156 170-291 (395)
91 TIGR02552 LcrH_SycD type III s 95.9 0.22 4.7E-06 35.8 10.9 85 7-92 25-112 (135)
92 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.23 5E-06 34.4 10.8 25 4-28 7-31 (119)
93 PRK10370 formate-dependent nit 95.8 0.26 5.7E-06 38.4 11.6 90 64-156 72-167 (198)
94 TIGR03302 OM_YfiO outer membra 95.8 0.24 5.1E-06 39.4 11.7 125 4-128 75-230 (235)
95 PRK11189 lipoprotein NlpI; Pro 95.8 0.43 9.3E-06 39.7 13.6 118 6-127 71-191 (296)
96 PF12895 Apc3: Anaphase-promot 95.8 0.014 2.9E-07 38.7 3.7 53 70-125 30-82 (84)
97 PF00637 Clathrin: Region in C 95.8 0.00054 1.2E-08 50.4 -3.6 128 5-148 13-140 (143)
98 PF12895 Apc3: Anaphase-promot 95.7 0.048 1E-06 36.0 5.9 79 12-90 2-83 (84)
99 KOG3785 Uncharacterized conser 95.6 0.1 2.2E-06 44.0 8.8 22 5-26 291-312 (557)
100 KOG3081 Vesicle coat complex C 95.6 0.28 6E-06 39.7 10.8 49 77-127 185-233 (299)
101 TIGR02795 tol_pal_ybgF tol-pal 95.6 0.095 2.1E-06 36.4 7.7 61 67-127 41-102 (119)
102 KOG3941 Intermediate in Toll s 95.6 0.16 3.5E-06 41.5 9.5 40 84-124 142-182 (406)
103 PF12569 NARP1: NMDA receptor- 95.6 0.62 1.3E-05 41.9 14.1 87 67-156 196-285 (517)
104 KOG1915 Cell cycle control pro 95.5 0.22 4.8E-06 43.6 10.6 140 13-156 87-230 (677)
105 KOG3616 Selective LIM binding 95.5 0.079 1.7E-06 48.7 8.1 107 2-127 768-876 (1636)
106 KOG1070 rRNA processing protei 95.3 0.4 8.8E-06 47.1 12.4 150 5-156 1464-1623(1710)
107 KOG3941 Intermediate in Toll s 94.9 0.3 6.5E-06 40.0 9.2 81 13-93 86-187 (406)
108 PF14559 TPR_19: Tetratricopep 94.8 0.24 5.2E-06 30.8 7.1 50 10-60 2-51 (68)
109 cd05804 StaR_like StaR_like; a 94.7 0.78 1.7E-05 38.8 12.1 115 12-128 93-213 (355)
110 COG2956 Predicted N-acetylgluc 94.7 0.3 6.6E-06 40.7 8.9 150 12-168 48-217 (389)
111 PF09976 TPR_21: Tetratricopep 94.7 0.93 2E-05 33.2 11.0 89 66-155 49-140 (145)
112 KOG1070 rRNA processing protei 94.7 0.89 1.9E-05 44.9 13.0 150 2-156 1500-1657(1710)
113 PRK10153 DNA-binding transcrip 94.7 2 4.4E-05 38.7 14.8 69 64-135 419-488 (517)
114 PRK02603 photosystem I assembl 94.6 0.96 2.1E-05 34.2 11.1 110 35-148 36-166 (172)
115 PRK15179 Vi polysaccharide bio 94.6 2.2 4.8E-05 39.9 15.2 117 6-127 93-214 (694)
116 PRK10370 formate-dependent nit 94.4 0.28 6.1E-06 38.2 8.0 123 16-143 56-187 (198)
117 KOG3617 WD40 and TPR repeat-co 94.4 0.12 2.6E-06 48.0 6.4 102 8-127 737-852 (1416)
118 KOG3081 Vesicle coat complex C 94.3 0.61 1.3E-05 37.8 9.4 131 20-156 94-230 (299)
119 PRK15179 Vi polysaccharide bio 94.2 1.2 2.5E-05 41.7 12.6 125 29-156 81-211 (694)
120 COG5107 RNA14 Pre-mRNA 3'-end 94.2 0.72 1.5E-05 40.3 10.3 142 2-146 400-548 (660)
121 PF13424 TPR_12: Tetratricopep 94.2 0.18 3.9E-06 32.5 5.5 63 65-127 5-72 (78)
122 PLN03088 SGT1, suppressor of 94.0 0.72 1.6E-05 39.5 10.3 86 7-93 10-98 (356)
123 CHL00033 ycf3 photosystem I as 94.0 1.2 2.5E-05 33.5 10.4 107 16-125 16-137 (168)
124 KOG4340 Uncharacterized conser 93.8 1.1 2.4E-05 37.1 10.3 143 10-154 155-331 (459)
125 PF03704 BTAD: Bacterial trans 93.8 0.37 7.9E-06 35.3 7.1 58 67-127 64-122 (146)
126 COG2956 Predicted N-acetylgluc 93.7 1.1 2.3E-05 37.5 10.1 142 7-152 115-268 (389)
127 KOG1914 mRNA cleavage and poly 93.7 1.6 3.6E-05 38.9 11.7 138 15-156 347-495 (656)
128 PF12688 TPR_5: Tetratrico pep 93.7 1.8 4E-05 30.8 10.3 52 8-59 10-63 (120)
129 KOG1155 Anaphase-promoting com 93.6 1.3 2.9E-05 38.7 10.8 152 1-156 332-489 (559)
130 PF13432 TPR_16: Tetratricopep 93.6 0.22 4.8E-06 30.8 4.8 58 72-132 4-63 (65)
131 KOG1128 Uncharacterized conser 93.5 0.67 1.4E-05 42.6 9.3 53 2-56 427-479 (777)
132 PF03704 BTAD: Bacterial trans 93.4 0.53 1.1E-05 34.4 7.4 70 35-104 63-139 (146)
133 PRK02603 photosystem I assembl 93.2 2.9 6.2E-05 31.5 11.8 83 65-148 35-121 (172)
134 KOG2047 mRNA splicing factor [ 93.0 3.2 7E-05 38.0 12.6 44 2-47 251-294 (835)
135 KOG2376 Signal recognition par 93.0 1.8 3.9E-05 39.0 10.9 115 5-127 18-136 (652)
136 COG4783 Putative Zn-dependent 92.9 2.7 5.8E-05 37.0 11.7 106 46-154 318-429 (484)
137 KOG1173 Anaphase-promoting com 92.9 3.2 6.9E-05 37.3 12.3 133 9-145 390-534 (611)
138 KOG1128 Uncharacterized conser 92.8 1.1 2.3E-05 41.4 9.4 203 5-237 404-617 (777)
139 KOG2796 Uncharacterized conser 92.7 4.8 0.0001 32.9 12.1 133 4-140 182-326 (366)
140 PF13414 TPR_11: TPR repeat; P 92.7 0.83 1.8E-05 28.4 6.6 61 64-127 2-64 (69)
141 PF04840 Vps16_C: Vps16, C-ter 92.5 2.6 5.6E-05 35.5 11.1 81 64-152 176-256 (319)
142 KOG0553 TPR repeat-containing 92.5 1.5 3.2E-05 36.2 9.1 77 64-143 114-192 (304)
143 KOG2041 WD40 repeat protein [G 92.3 0.87 1.9E-05 41.9 8.2 180 12-236 747-952 (1189)
144 CHL00033 ycf3 photosystem I as 92.2 2.2 4.8E-05 32.0 9.6 62 65-127 35-98 (168)
145 PLN03088 SGT1, suppressor of 92.2 1.3 2.9E-05 37.9 9.1 95 46-143 14-113 (356)
146 KOG0495 HAT repeat protein [RN 92.1 6.6 0.00014 36.2 13.3 150 2-155 519-673 (913)
147 KOG2002 TPR-containing nuclear 91.6 0.95 2.1E-05 42.9 8.0 155 8-164 573-749 (1018)
148 PF12569 NARP1: NMDA receptor- 91.6 3.9 8.6E-05 36.9 11.7 152 2-156 146-328 (517)
149 COG4783 Putative Zn-dependent 91.4 3 6.5E-05 36.7 10.3 79 75-156 316-397 (484)
150 KOG2002 TPR-containing nuclear 91.3 0.93 2E-05 43.0 7.5 128 12-140 625-758 (1018)
151 KOG1915 Cell cycle control pro 91.0 6.6 0.00014 34.8 11.9 115 9-127 117-233 (677)
152 KOG0985 Vesicle coat protein c 90.9 4.6 0.0001 39.1 11.6 76 2-85 1107-1186(1666)
153 KOG1129 TPR repeat-containing 90.7 2.7 5.9E-05 35.3 9.0 152 1-156 258-418 (478)
154 KOG2076 RNA polymerase III tra 90.7 3.9 8.5E-05 38.6 10.9 119 4-122 419-547 (895)
155 PRK10153 DNA-binding transcrip 90.4 6.3 0.00014 35.7 11.9 137 28-164 331-486 (517)
156 KOG1914 mRNA cleavage and poly 90.4 4.6 0.0001 36.2 10.5 145 2-148 369-525 (656)
157 KOG3785 Uncharacterized conser 90.3 9.8 0.00021 32.5 11.9 83 7-91 65-147 (557)
158 PF13371 TPR_9: Tetratricopept 90.2 1.4 2.9E-05 27.7 5.8 59 73-134 3-63 (73)
159 PF04184 ST7: ST7 protein; In 89.7 13 0.00028 33.2 12.7 80 69-148 263-346 (539)
160 PRK14720 transcript cleavage f 89.4 9.3 0.0002 36.9 12.5 119 2-125 34-173 (906)
161 COG5107 RNA14 Pre-mRNA 3'-end 89.1 3.4 7.4E-05 36.3 8.7 127 34-164 397-535 (660)
162 PLN03098 LPA1 LOW PSII ACCUMUL 89.0 2.2 4.9E-05 37.4 7.6 60 64-126 74-137 (453)
163 PF13929 mRNA_stabil: mRNA sta 88.9 7.7 0.00017 32.0 10.2 65 87-151 188-256 (292)
164 KOG1173 Anaphase-promoting com 88.8 9.9 0.00021 34.3 11.4 116 49-164 395-522 (611)
165 PF13432 TPR_16: Tetratricopep 88.5 1.7 3.6E-05 26.7 5.1 48 7-56 5-53 (65)
166 KOG0547 Translocase of outer m 88.0 8.3 0.00018 34.3 10.4 51 75-127 438-488 (606)
167 PF13176 TPR_7: Tetratricopept 87.9 0.95 2.1E-05 24.4 3.2 26 1-26 1-26 (36)
168 KOG0495 HAT repeat protein [RN 87.4 23 0.00049 32.9 12.9 145 5-151 412-568 (913)
169 KOG0985 Vesicle coat protein c 87.2 8.2 0.00018 37.5 10.4 105 9-124 1058-1189(1666)
170 PRK14720 transcript cleavage f 87.0 19 0.0004 34.9 12.9 139 4-144 121-268 (906)
171 PF02284 COX5A: Cytochrome c o 86.8 8.2 0.00018 26.6 8.0 51 57-109 37-87 (108)
172 PF13414 TPR_11: TPR repeat; P 86.8 0.6 1.3E-05 29.1 2.3 57 100-156 2-61 (69)
173 COG3063 PilF Tfp pilus assembl 86.7 15 0.00032 29.5 12.0 158 2-164 72-240 (250)
174 PRK10803 tol-pal system protei 86.6 12 0.00025 30.7 10.2 59 70-128 185-244 (263)
175 PF13176 TPR_7: Tetratricopept 86.5 1.4 3E-05 23.7 3.4 24 103-126 1-24 (36)
176 PF10300 DUF3808: Protein of u 85.8 12 0.00027 33.3 10.7 14 213-226 421-434 (468)
177 KOG1155 Anaphase-promoting com 85.6 25 0.00055 31.2 13.4 150 2-154 367-528 (559)
178 cd00923 Cyt_c_Oxidase_Va Cytoc 85.6 6.1 0.00013 27.0 6.6 50 58-109 35-84 (103)
179 KOG2047 mRNA splicing factor [ 85.4 22 0.00047 32.9 11.8 25 102-126 249-273 (835)
180 KOG2076 RNA polymerase III tra 85.3 15 0.00033 34.9 11.1 121 8-132 386-513 (895)
181 PRK15363 pathogenicity island 85.0 14 0.0003 27.6 10.0 54 69-125 73-127 (157)
182 KOG1538 Uncharacterized conser 84.9 23 0.0005 32.9 11.7 52 2-56 601-654 (1081)
183 PF13428 TPR_14: Tetratricopep 84.7 2.8 6E-05 23.6 4.2 25 103-127 3-27 (44)
184 PF10602 RPN7: 26S proteasome 84.4 13 0.00029 28.3 9.1 49 4-52 41-91 (177)
185 COG3629 DnrI DNA-binding trans 84.2 8.5 0.00018 31.8 8.3 73 67-142 155-236 (280)
186 KOG4570 Uncharacterized conser 84.2 8 0.00017 32.5 8.0 97 28-127 58-161 (418)
187 KOG1174 Anaphase-promoting com 84.2 28 0.00061 30.5 12.3 152 8-164 343-504 (564)
188 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 3.7 8.1E-05 28.0 5.0 41 16-56 24-64 (103)
189 PF13424 TPR_12: Tetratricopep 83.6 3.9 8.4E-05 26.0 5.1 27 65-91 46-72 (78)
190 PF13374 TPR_10: Tetratricopep 83.4 2.4 5.3E-05 23.0 3.6 27 101-127 2-28 (42)
191 PF11848 DUF3368: Domain of un 83.3 6.1 0.00013 23.0 5.3 38 6-43 9-46 (48)
192 PF14938 SNAP: Soluble NSF att 83.2 16 0.00034 30.1 9.7 123 5-128 41-182 (282)
193 PLN03098 LPA1 LOW PSII ACCUMUL 82.9 10 0.00022 33.4 8.5 56 2-59 78-137 (453)
194 KOG3617 WD40 and TPR repeat-co 82.8 7.9 0.00017 36.8 8.1 13 78-90 925-937 (1416)
195 PRK10803 tol-pal system protei 82.8 7.1 0.00015 31.9 7.4 97 65-164 143-250 (263)
196 KOG2280 Vacuolar assembly/sort 82.0 18 0.0004 33.8 10.1 86 36-128 686-771 (829)
197 PF02284 COX5A: Cytochrome c o 81.8 6.6 0.00014 27.1 5.6 59 15-73 26-87 (108)
198 PF13374 TPR_10: Tetratricopep 81.7 2.5 5.4E-05 23.0 3.2 27 1-27 4-30 (42)
199 PF09613 HrpB1_HrpK: Bacterial 81.2 17 0.00037 27.3 8.1 67 76-145 21-89 (160)
200 PRK04841 transcriptional regul 80.5 18 0.00039 34.9 10.4 123 5-127 497-638 (903)
201 COG3898 Uncharacterized membra 80.5 37 0.0008 29.6 10.7 86 11-101 132-224 (531)
202 PF12688 TPR_5: Tetratrico pep 80.2 19 0.0004 25.6 9.3 94 50-144 21-117 (120)
203 KOG2053 Mitochondrial inherita 79.6 50 0.0011 31.7 12.2 114 9-128 19-141 (932)
204 KOG4570 Uncharacterized conser 79.5 12 0.00026 31.5 7.4 84 11-94 76-164 (418)
205 PF13371 TPR_9: Tetratricopept 79.5 7.5 0.00016 24.2 5.3 48 7-55 3-50 (73)
206 KOG1127 TPR repeat-containing 78.7 13 0.00028 36.0 8.3 121 8-132 501-628 (1238)
207 TIGR02561 HrpB1_HrpK type III 78.6 25 0.00053 26.1 8.6 66 77-145 22-89 (153)
208 PF13428 TPR_14: Tetratricopep 78.5 4 8.6E-05 23.0 3.3 27 2-28 4-30 (44)
209 PF00637 Clathrin: Region in C 78.2 2.5 5.4E-05 30.6 3.0 57 70-127 12-68 (143)
210 PF07079 DUF1347: Protein of u 78.2 49 0.0011 29.4 11.3 128 10-140 17-174 (549)
211 PF11846 DUF3366: Domain of un 77.7 11 0.00024 29.0 6.7 60 69-128 112-171 (193)
212 COG3629 DnrI DNA-binding trans 77.2 20 0.00044 29.6 8.2 49 62-110 184-236 (280)
213 PF13762 MNE1: Mitochondrial s 76.1 7.6 0.00017 28.6 5.0 49 32-80 77-130 (145)
214 PF13512 TPR_18: Tetratricopep 74.8 12 0.00025 27.6 5.6 52 76-127 21-73 (142)
215 KOG2376 Signal recognition par 73.2 76 0.0016 29.1 12.3 119 5-128 382-518 (652)
216 PRK04841 transcriptional regul 73.2 82 0.0018 30.5 12.7 149 8-156 461-635 (903)
217 COG3898 Uncharacterized membra 72.8 65 0.0014 28.2 12.8 146 2-153 191-349 (531)
218 PF07721 TPR_4: Tetratricopept 71.8 9 0.0002 18.8 3.2 21 105-125 5-25 (26)
219 PF10579 Rapsyn_N: Rapsyn N-te 71.4 20 0.00044 23.4 5.5 48 77-124 18-66 (80)
220 KOG0553 TPR repeat-containing 69.2 66 0.0014 26.8 10.2 85 77-164 93-182 (304)
221 KOG2280 Vacuolar assembly/sort 68.8 38 0.00081 31.9 8.5 56 32-89 713-768 (829)
222 KOG2114 Vacuolar assembly/sort 68.6 56 0.0012 31.3 9.6 127 17-153 415-558 (933)
223 COG4700 Uncharacterized protei 68.3 55 0.0012 25.6 12.0 46 8-53 98-143 (251)
224 cd07229 Pat_TGL3_like Triacylg 67.5 52 0.0011 28.6 8.9 55 95-150 180-254 (391)
225 KOG0548 Molecular co-chaperone 66.8 73 0.0016 28.7 9.6 100 8-111 11-114 (539)
226 COG4235 Cytochrome c biogenesi 66.8 28 0.0006 28.9 6.7 101 62-162 153-258 (287)
227 cd00280 TRFH Telomeric Repeat 66.4 33 0.00072 26.5 6.6 67 81-147 85-157 (200)
228 PF14938 SNAP: Soluble NSF att 66.3 72 0.0016 26.1 13.3 138 11-151 86-252 (282)
229 KOG1920 IkappaB kinase complex 65.9 77 0.0017 31.6 10.2 126 4-146 795-948 (1265)
230 PF09205 DUF1955: Domain of un 64.8 47 0.001 24.4 6.7 81 11-97 68-151 (161)
231 KOG1156 N-terminal acetyltrans 63.6 1.3E+02 0.0028 28.1 13.0 92 62-156 366-462 (700)
232 KOG4340 Uncharacterized conser 63.3 90 0.0019 26.3 8.9 118 7-127 249-372 (459)
233 PF12796 Ank_2: Ankyrin repeat 63.0 20 0.00044 23.2 4.6 70 8-84 3-75 (89)
234 PF13431 TPR_17: Tetratricopep 62.8 8 0.00017 20.5 2.1 22 100-121 12-33 (34)
235 PF04053 Coatomer_WDAD: Coatom 62.7 1E+02 0.0022 27.4 10.0 120 8-150 270-390 (443)
236 PF13170 DUF4003: Protein of u 62.1 93 0.002 26.0 12.2 114 14-128 118-248 (297)
237 PF13762 MNE1: Mitochondrial s 61.8 62 0.0014 23.9 7.5 95 19-114 22-128 (145)
238 COG5108 RPO41 Mitochondrial DN 61.4 1.2E+02 0.0026 28.6 10.1 74 4-77 33-115 (1117)
239 PF00515 TPR_1: Tetratricopept 61.3 19 0.00041 18.5 3.4 25 67-91 3-27 (34)
240 smart00299 CLH Clathrin heavy 60.9 58 0.0013 23.2 7.1 43 70-114 12-54 (140)
241 KOG2796 Uncharacterized conser 58.9 1E+02 0.0022 25.5 10.0 79 49-128 196-279 (366)
242 PF13181 TPR_8: Tetratricopept 58.5 24 0.00051 18.0 3.6 25 103-127 3-27 (34)
243 COG3118 Thioredoxin domain-con 58.3 1.1E+02 0.0024 25.6 10.7 136 8-148 143-287 (304)
244 KOG2053 Mitochondrial inherita 57.9 67 0.0015 30.9 8.2 95 57-155 37-132 (932)
245 TIGR03504 FimV_Cterm FimV C-te 57.6 25 0.00054 20.0 3.6 26 5-30 5-30 (44)
246 PF11207 DUF2989: Protein of u 57.5 75 0.0016 24.9 7.3 79 42-121 115-198 (203)
247 PF13174 TPR_6: Tetratricopept 55.9 14 0.0003 18.6 2.3 22 7-28 8-29 (33)
248 PF11848 DUF3368: Domain of un 55.3 39 0.00084 19.5 4.3 36 73-109 10-45 (48)
249 KOG1174 Anaphase-promoting com 55.1 1.5E+02 0.0033 26.2 10.5 72 60-132 189-264 (564)
250 COG5159 RPN6 26S proteasome re 55.1 1.3E+02 0.0027 25.3 9.8 148 6-153 10-185 (421)
251 PF10602 RPN7: 26S proteasome 54.9 56 0.0012 24.9 6.3 61 66-127 37-99 (177)
252 PF14669 Asp_Glu_race_2: Putat 54.6 20 0.00044 27.9 3.7 60 68-128 135-208 (233)
253 PF09205 DUF1955: Domain of un 54.6 84 0.0018 23.1 8.1 58 68-127 89-146 (161)
254 COG4455 ImpE Protein of avirul 54.5 84 0.0018 25.2 7.1 74 36-110 7-81 (273)
255 PF14689 SPOB_a: Sensor_kinase 54.2 25 0.00054 21.6 3.5 24 4-27 28-51 (62)
256 PF13281 DUF4071: Domain of un 54.0 1.5E+02 0.0032 25.8 11.4 117 12-128 195-332 (374)
257 KOG4648 Uncharacterized conser 53.2 34 0.00073 29.3 5.1 78 8-91 106-184 (536)
258 cd08819 CARD_MDA5_2 Caspase ac 52.8 67 0.0015 21.5 5.7 65 84-152 21-85 (88)
259 PF10579 Rapsyn_N: Rapsyn N-te 52.4 64 0.0014 21.1 5.8 49 6-55 14-64 (80)
260 KOG1125 TPR repeat-containing 50.7 2E+02 0.0044 26.3 9.8 67 61-132 428-496 (579)
261 KOG0624 dsRNA-activated protei 50.1 1.7E+02 0.0037 25.3 12.5 21 9-29 116-136 (504)
262 TIGR02508 type_III_yscG type I 49.1 85 0.0018 21.8 5.6 57 81-140 21-77 (115)
263 KOG4162 Predicted calmodulin-b 48.6 2.5E+02 0.0054 26.8 10.2 95 57-153 315-414 (799)
264 PF10300 DUF3808: Protein of u 48.4 2E+02 0.0044 25.7 10.2 145 4-149 193-356 (468)
265 PRK10866 outer membrane biogen 48.2 1.4E+02 0.0031 23.9 12.8 144 8-156 41-235 (243)
266 COG4105 ComL DNA uptake lipopr 48.2 73 0.0016 25.9 6.1 64 63-127 33-97 (254)
267 cd08326 CARD_CASP9 Caspase act 48.2 59 0.0013 21.4 4.8 61 85-151 19-79 (84)
268 PF10366 Vps39_1: Vacuolar sor 47.5 31 0.00068 23.9 3.5 26 2-27 42-67 (108)
269 cd08819 CARD_MDA5_2 Caspase ac 46.0 89 0.0019 20.9 5.9 40 76-121 47-86 (88)
270 KOG4162 Predicted calmodulin-b 44.7 2.9E+02 0.0063 26.4 11.8 64 59-125 474-537 (799)
271 PLN02789 farnesyltranstransfer 43.6 2E+02 0.0043 24.3 12.5 36 16-52 125-160 (320)
272 PF07719 TPR_2: Tetratricopept 43.3 45 0.00098 16.7 3.8 25 4-28 6-30 (34)
273 KOG4077 Cytochrome c oxidase, 43.0 1.3E+02 0.0028 21.9 6.2 81 27-110 41-127 (149)
274 COG5108 RPO41 Mitochondrial DN 42.9 1.3E+02 0.0027 28.4 7.3 43 39-81 33-81 (1117)
275 PF11207 DUF2989: Protein of u 42.6 1.7E+02 0.0036 23.0 7.3 75 75-152 117-197 (203)
276 cd07153 Fur_like Ferric uptake 42.6 54 0.0012 22.6 4.2 48 4-51 5-52 (116)
277 cd08332 CARD_CASP2 Caspase act 42.2 73 0.0016 21.3 4.6 58 85-148 23-80 (90)
278 PF13170 DUF4003: Protein of u 42.1 2E+02 0.0044 24.0 10.2 85 15-100 78-177 (297)
279 PF02607 B12-binding_2: B12 bi 41.4 77 0.0017 20.1 4.6 41 8-48 10-50 (79)
280 KOG0548 Molecular co-chaperone 41.2 1.8E+02 0.004 26.3 7.9 80 8-92 367-453 (539)
281 PF12796 Ank_2: Ankyrin repeat 40.9 48 0.001 21.3 3.6 75 44-126 4-81 (89)
282 PF04124 Dor1: Dor1-like famil 39.9 1.7E+02 0.0036 24.9 7.5 38 4-41 111-149 (338)
283 PRK10564 maltose regulon perip 39.4 57 0.0012 27.3 4.3 39 60-99 251-290 (303)
284 PRK15331 chaperone protein Sic 39.4 1.7E+02 0.0036 22.2 8.9 82 10-93 48-133 (165)
285 PF11663 Toxin_YhaV: Toxin wit 39.3 13 0.00029 27.0 0.7 27 216-242 104-130 (140)
286 COG4003 Uncharacterized protei 39.3 61 0.0013 21.4 3.6 27 4-30 36-62 (98)
287 PF10366 Vps39_1: Vacuolar sor 39.3 1.3E+02 0.0028 20.8 8.2 26 103-128 41-66 (108)
288 PHA02884 ankyrin repeat protei 39.0 65 0.0014 26.9 4.8 82 2-88 33-124 (300)
289 KOG2297 Predicted translation 38.9 2.4E+02 0.0053 23.9 8.0 56 100-156 320-393 (412)
290 KOG3060 Uncharacterized conser 38.7 2.2E+02 0.0048 23.4 11.1 131 5-140 58-195 (289)
291 smart00028 TPR Tetratricopepti 38.4 46 0.00099 15.4 2.8 26 2-27 4-29 (34)
292 KOG0543 FKBP-type peptidyl-pro 38.1 2.5E+02 0.0055 24.5 8.1 19 8-26 217-235 (397)
293 PF09868 DUF2095: Uncharacteri 37.9 58 0.0013 22.9 3.5 40 4-44 66-105 (128)
294 KOG1125 TPR repeat-containing 37.8 99 0.0022 28.2 5.8 89 76-164 405-497 (579)
295 PF14840 DNA_pol3_delt_C: Proc 37.6 34 0.00073 24.5 2.5 28 11-38 9-36 (125)
296 PF04053 Coatomer_WDAD: Coatom 37.6 3E+02 0.0065 24.5 11.7 101 3-127 299-399 (443)
297 PF11846 DUF3366: Domain of un 37.3 53 0.0012 25.1 3.8 35 59-93 138-172 (193)
298 PLN02789 farnesyltranstransfer 37.0 2.6E+02 0.0056 23.6 13.0 137 4-145 42-188 (320)
299 PF08631 SPO22: Meiosis protei 36.8 2.3E+02 0.0051 23.1 14.0 134 10-145 4-167 (278)
300 KOG0403 Neoplastic transformat 36.4 3.2E+02 0.0069 24.6 11.0 25 3-27 349-373 (645)
301 KOG3060 Uncharacterized conser 36.4 2.4E+02 0.0053 23.2 13.0 139 12-156 25-177 (289)
302 PHA02875 ankyrin repeat protei 36.3 1.3E+02 0.0029 25.9 6.6 81 5-89 5-89 (413)
303 smart00804 TAP_C C-terminal do 35.7 52 0.0011 20.4 2.8 20 13-32 39-58 (63)
304 PF08870 DUF1832: Domain of un 35.5 1.1E+02 0.0024 21.5 4.8 90 15-115 5-96 (113)
305 COG1729 Uncharacterized protei 35.5 1.5E+02 0.0031 24.4 6.1 58 67-127 144-204 (262)
306 PF13929 mRNA_stabil: mRNA sta 35.2 2.7E+02 0.0058 23.3 13.1 112 15-126 144-263 (292)
307 KOG2396 HAT (Half-A-TPR) repea 34.9 3.5E+02 0.0077 24.6 10.5 35 106-140 465-501 (568)
308 PF01475 FUR: Ferric uptake re 34.4 61 0.0013 22.6 3.5 48 4-51 12-59 (120)
309 PRK11906 transcriptional regul 33.5 3.5E+02 0.0077 24.2 11.6 116 14-132 273-404 (458)
310 COG2838 Icd Monomeric isocitra 31.9 1.3E+02 0.0028 27.2 5.4 116 32-151 264-403 (744)
311 TIGR02561 HrpB1_HrpK type III 31.4 1E+02 0.0022 22.9 4.2 67 11-79 22-90 (153)
312 TIGR03184 DNA_S_dndE DNA sulfu 31.4 1.5E+02 0.0032 20.6 4.7 92 15-115 4-98 (105)
313 KOG1920 IkappaB kinase complex 31.4 2.2E+02 0.0047 28.7 7.3 52 72-127 972-1025(1265)
314 KOG3807 Predicted membrane pro 31.1 3.5E+02 0.0075 23.3 9.7 70 74-144 284-359 (556)
315 PF11817 Foie-gras_1: Foie gra 30.7 1.2E+02 0.0025 24.5 4.9 68 81-151 161-236 (247)
316 PHA02875 ankyrin repeat protei 30.1 1.2E+02 0.0027 26.1 5.4 18 47-64 112-129 (413)
317 PF11663 Toxin_YhaV: Toxin wit 29.5 55 0.0012 23.9 2.5 30 78-110 108-137 (140)
318 COG0735 Fur Fe2+/Zn2+ uptake r 29.1 1.1E+02 0.0024 22.5 4.1 47 4-50 25-71 (145)
319 PF14669 Asp_Glu_race_2: Putat 28.9 1.6E+02 0.0034 23.2 4.9 29 61-89 177-205 (233)
320 PRK15363 pathogenicity island 28.5 2.6E+02 0.0055 21.0 10.0 79 75-156 45-126 (157)
321 KOG2214 Predicted esterase of 28.3 3.1E+02 0.0068 24.9 7.3 122 19-151 190-334 (543)
322 PRK11639 zinc uptake transcrip 28.1 88 0.0019 23.6 3.6 60 23-82 15-77 (169)
323 COG3947 Response regulator con 27.6 3.8E+02 0.0082 22.7 7.6 43 71-116 285-328 (361)
324 smart00386 HAT HAT (Half-A-TPR 27.5 85 0.0019 15.2 4.0 29 13-42 1-29 (33)
325 PF07163 Pex26: Pex26 protein; 27.5 3.7E+02 0.008 22.5 7.9 87 39-128 88-185 (309)
326 PF07035 Mic1: Colon cancer-as 27.4 2.8E+02 0.006 21.0 12.0 82 2-91 32-115 (167)
327 PF13606 Ank_3: Ankyrin repeat 27.1 83 0.0018 15.9 2.3 14 48-61 13-26 (30)
328 PF11459 DUF2893: Protein of u 26.9 1.1E+02 0.0024 19.4 3.2 36 109-145 12-47 (69)
329 KOG2066 Vacuolar assembly/sort 26.3 3.7E+02 0.008 25.8 7.6 59 80-148 636-705 (846)
330 PF12816 Vps8: Golgi CORVET co 25.7 2.5E+02 0.0053 21.8 5.7 48 102-151 23-70 (196)
331 KOG2396 HAT (Half-A-TPR) repea 25.7 3.1E+02 0.0067 24.9 6.8 78 60-138 100-179 (568)
332 PF02184 HAT: HAT (Half-A-TPR) 25.5 52 0.0011 17.4 1.3 21 117-137 3-24 (32)
333 COG4105 ComL DNA uptake lipopr 25.2 3.8E+02 0.0082 21.9 11.9 152 9-160 44-232 (254)
334 KOG4648 Uncharacterized conser 25.1 2.1E+02 0.0045 24.7 5.4 73 44-125 107-182 (536)
335 PF07827 KNTase_C: KNTase C-te 24.9 2.8E+02 0.0062 20.3 6.2 118 21-147 5-132 (143)
336 KOG4555 TPR repeat-containing 24.8 2.9E+02 0.0063 20.4 7.5 95 45-140 54-167 (175)
337 PF11838 ERAP1_C: ERAP1-like C 24.4 4E+02 0.0087 21.9 12.8 109 15-125 146-261 (324)
338 KOG0550 Molecular chaperone (D 24.2 3E+02 0.0064 24.4 6.3 55 10-64 260-317 (486)
339 KOG4555 TPR repeat-containing 24.1 2.5E+02 0.0055 20.7 5.0 80 74-156 52-138 (175)
340 KOG2114 Vacuolar assembly/sort 24.0 6.9E+02 0.015 24.4 10.9 112 4-127 339-457 (933)
341 PF07443 HARP: HepA-related pr 23.9 26 0.00056 21.1 -0.0 34 13-46 6-39 (55)
342 KOG0276 Vesicle coat complex C 23.6 6.2E+02 0.013 23.8 9.2 25 65-89 666-690 (794)
343 KOG2908 26S proteasome regulat 23.5 3.2E+02 0.0069 23.5 6.2 81 71-151 81-175 (380)
344 KOG1538 Uncharacterized conser 23.4 2.3E+02 0.0051 26.7 5.7 60 64-133 746-806 (1081)
345 KOG0508 Ankyrin repeat protein 23.3 63 0.0014 28.9 2.2 56 33-89 147-204 (615)
346 PF07240 Turandot: Stress-indu 23.1 2.4E+02 0.0051 18.8 4.8 78 7-91 4-83 (85)
347 TIGR01529 argR_whole arginine 23.1 1.6E+02 0.0034 21.7 4.0 38 5-42 6-43 (146)
348 KOG2041 WD40 repeat protein [G 23.1 1.2E+02 0.0026 28.8 3.9 75 50-128 679-761 (1189)
349 cd08323 CARD_APAF1 Caspase act 23.0 2.4E+02 0.0051 18.7 4.8 62 84-151 16-77 (86)
350 KOG4077 Cytochrome c oxidase, 22.7 3.1E+02 0.0067 20.0 7.9 63 80-143 64-128 (149)
351 PHA02884 ankyrin repeat protei 22.6 1E+02 0.0023 25.7 3.3 89 33-126 29-126 (300)
352 PF10255 Paf67: RNA polymerase 22.5 5.4E+02 0.012 22.7 8.0 62 66-127 123-190 (404)
353 PF10126 Nit_Regul_Hom: Unchar 22.5 83 0.0018 21.8 2.2 29 213-241 43-71 (110)
354 PF14744 WASH-7_mid: WASH comp 22.3 2E+02 0.0043 24.6 4.8 44 15-58 282-326 (350)
355 KOG2610 Uncharacterized conser 22.1 5.2E+02 0.011 22.4 9.7 113 12-128 116-236 (491)
356 COG0292 RplT Ribosomal protein 22.1 2.8E+02 0.006 19.5 4.7 41 33-74 72-112 (118)
357 PRK10866 outer membrane biogen 21.8 4.2E+02 0.0092 21.2 14.1 21 104-124 147-167 (243)
358 PF05944 Phage_term_smal: Phag 21.6 3.2E+02 0.007 19.8 5.3 25 6-30 55-79 (132)
359 PHA03100 ankyrin repeat protei 21.6 3.3E+02 0.0072 23.9 6.6 45 44-88 80-128 (480)
360 COG4075 Uncharacterized conser 21.6 87 0.0019 21.3 2.1 27 213-239 43-69 (110)
361 cd08780 Death_TRADD Death Doma 21.5 2.6E+02 0.0057 18.7 4.8 57 65-124 32-88 (90)
362 cd08789 CARD_IPS-1_RIG-I Caspa 21.4 2.5E+02 0.0054 18.4 4.6 41 74-120 41-81 (84)
363 KOG1585 Protein required for f 21.4 4.7E+02 0.01 21.6 10.5 52 104-156 193-250 (308)
364 COG4235 Cytochrome c biogenesi 21.3 4.9E+02 0.011 21.7 10.0 105 33-140 155-267 (287)
365 COG4150 CysP ABC-type sulfate 20.9 28 0.00061 28.2 -0.3 84 76-168 70-161 (341)
366 PHA02791 ankyrin-like protein; 20.9 3.6E+02 0.0078 22.3 6.1 138 5-154 33-178 (284)
367 cd08812 CARD_RIG-I_like Caspas 20.5 2.4E+02 0.0052 18.7 4.1 33 13-49 48-81 (88)
368 cd08790 DED_DEDD Death Effecto 20.5 2.9E+02 0.0063 18.8 4.7 55 11-66 36-93 (97)
369 PF13934 ELYS: Nuclear pore co 20.2 4.5E+02 0.0097 20.9 11.4 105 36-146 78-185 (226)
370 smart00777 Mad3_BUB1_I Mad3/BU 20.0 2.7E+02 0.0059 19.9 4.6 43 82-125 80-123 (125)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-46 Score=340.06 Aligned_cols=245 Identities=29% Similarity=0.510 Sum_probs=228.4
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH------------------------
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF------------------------ 56 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~------------------------ 56 (245)
|||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|.++.++++
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 69999999999999999999999999999999999999999999888777766554
Q ss_pred ----------------------------------------------HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 57 ----------------------------------------------ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 57 ----------------------------------------------~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
.+.|+.||..||+++|++|++.|.+++|.++|++
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 5679999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc--cccccccc----
Q 043265 91 VTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK---- 164 (245)
Q Consensus 91 m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~---- 164 (245)
|.++.|+.|+..+|++||++|++.|++++|.++|++|+.+||..+|++||.+|+.+|+++.|+.+. ++++.|+.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 987789999999999999999999999999999999999999999999999999999999988776 66776653
Q ss_pred ----------------------------------------------------------------------ccCCcccccc
Q 043265 165 ----------------------------------------------------------------------KDAGYMPYTE 174 (245)
Q Consensus 165 ----------------------------------------------------------------------~~~g~~~~~~ 174 (245)
+..|++|+..
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 6688899988
Q ss_pred cccccCchhhhhcccccchHHHHHHHHhhcCCCCCeEEeeccccccCchhhHHHHhhhhcCceeeeccCCC
Q 043265 175 YVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIVRDKTT 245 (245)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 245 (245)
..++++++..++..+..|+++|++|++++...|+.+|+++++++.|||||+|.++++++.+|.|||||.+|
T Consensus 612 ~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~r 682 (697)
T PLN03081 612 ELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASR 682 (697)
T ss_pred hhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCc
Confidence 88888988888888999999999999999999999999999999999999999999999999999999997
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-43 Score=330.54 Aligned_cols=239 Identities=32% Similarity=0.466 Sum_probs=220.5
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHH----HHHHhcCCCCcHhhHHHHHHHhc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG----KRFENDGVRPNWSTFVGVITACG 76 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~p~~~t~~~ll~~~~ 76 (245)
++|+||.+|+|+|++++|.++|++| .||.++||++|.+|++.|..++| .+|.+.|+.||..||+++|.+|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 3689999999999999999999987 68999999999999999866665 56788999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+.|++++|.++|++|.++.|+.|+..+|++|+++|++.|++++|++++++|+++||..+|++||.+|+.+|+++.++.+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999986689999999999999999999999999999999999999999999999999999999988777
Q ss_pred --cccccccc----------------------------------------------------------------------
Q 043265 157 --SLRLSNKK---------------------------------------------------------------------- 164 (245)
Q Consensus 157 --~~~~~~~~---------------------------------------------------------------------- 164 (245)
++++.|+.
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 77888776
Q ss_pred ----ccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCCeEEeeccccccCchhhHHHHhhhhcCceeee
Q 043265 165 ----KDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHNFIKKLSSIENREIIV 240 (245)
Q Consensus 165 ----~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 240 (245)
+..|++||....+ ..++..++..+..|+++|++|++++++.|+.+|+++++++.|+|||+|.++++++.+|.|||
T Consensus 761 ~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~ 839 (857)
T PLN03077 761 YEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISV 839 (857)
T ss_pred HHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEE
Confidence 6788888877655 44666778888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043265 241 RDKTT 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
||.+|
T Consensus 840 rd~~r 844 (857)
T PLN03077 840 RDTEQ 844 (857)
T ss_pred ecCCc
Confidence 99997
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-36 Score=279.00 Aligned_cols=225 Identities=15% Similarity=0.250 Sum_probs=136.2
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHH----HHHHhcCCCCcHhhHHHHHHHhc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG----KRFENDGVRPNWSTFVGVITACG 76 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~p~~~t~~~ll~~~~ 76 (245)
+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|.++.| .+|.+.|+.||..||++||.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 36666666666666666666666666666666666666666666666655554 33455666666666666666666
Q ss_pred ccCcHHHHHHHHHHhhhh-cCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCCccc
Q 043265 77 CFGAVDEGFQHFESVTRD-YDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~~ 152 (245)
+.|++++|.++|++|... .|+.||.++|++||++|++.|++++|.++|+.|. +.|+..+||+||.+|++.|+++.
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de- 632 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF- 632 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH-
Confidence 666666666666666432 3566666666666666666666666666666664 45666666666666666666665
Q ss_pred ccccccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCCe--------EEeeccccccCchh
Q 043265 153 EPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRT--------LRIKKNLRICGECH 224 (245)
Q Consensus 153 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~--------~~l~~~~~~~g~~~ 224 (245)
+++++.+|...|+.||..+|...+.... +.+.++.|..++..|.... ..++++|.++|+++
T Consensus 633 ----Al~lf~eM~~~Gv~PD~~TynsLI~a~~-------k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 633 ----ALSIYDDMKKKGVKPDEVFFSALVDVAG-------HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred ----HHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 4455555667778888777666555322 2333444444444443111 12555555556655
Q ss_pred hHHHHhhhhcCce
Q 043265 225 NFIKKLSSIENRE 237 (245)
Q Consensus 225 ~a~~~~~~~~~~~ 237 (245)
+|.++|++|.+.+
T Consensus 702 eA~~lf~eM~~~g 714 (1060)
T PLN03218 702 KALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.4e-35 Score=274.28 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=197.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHH----HHh--cCCCCcHhhHHHHHHH
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR----FEN--DGVRPNWSTFVGVITA 74 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----~~~--~~~~p~~~t~~~ll~~ 74 (245)
|||+||.+|++.|++++|.++|++|.+.|+.||.+||++||.+|++.|.++.|.+ |.. .|+.||..||++||.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999998888765 443 5799999999999999
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCCcc
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
|++.|++++|.++|++|.+ .|+.|+..+|++||++|++.|++++|.++|++|. +.||..||++||.+|++.|+++.
T Consensus 589 y~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999988 7999999999999999999999999999999996 68999999999999999999888
Q ss_pred cccccccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCC--------eEEeeccccccCch
Q 043265 152 GEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGR--------TLRIKKNLRICGEC 223 (245)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~--------~~~l~~~~~~~g~~ 223 (245)
+++++.+|...|+.|+..++...+.. +.+.+++..|..++..|... ...++++|+++|++
T Consensus 668 -----A~~l~~eM~k~G~~pd~~tynsLI~a-------y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 668 -----AFEILQDARKQGIKLGTVSYSSLMGA-------CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred -----HHHHHHHHHHcCCCCCHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 55566666788999999888777764 33456666777776666311 12478888888888
Q ss_pred hhHHHHhhhhcCceeeec
Q 043265 224 HNFIKKLSSIENREIIVR 241 (245)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~ 241 (245)
++|.++|++|.+.++.++
T Consensus 736 eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 888888888888776654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-34 Score=266.18 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=178.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh---------------------------------
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL--------------------------------- 47 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~--------------------------------- 47 (245)
|||+||.+|++.|++++|.++|++|...|+.||.+||+++|++|+..
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 69999999999999999999999999999999988887766665443
Q ss_pred --hhHHHHHH-----------------------------------HHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 48 --KLLEAGKR-----------------------------------FENDGVRPNWSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 48 --~~~~~~~~-----------------------------------~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
|.++.|.+ |.+.|+.||..||+++|.+|++.|+++.|.+++..
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 33333332 25567888888888888888888888888888888
Q ss_pred hhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcccccccccccccccccCCcc
Q 043265 91 VTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYM 170 (245)
Q Consensus 91 m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 170 (245)
|.+ .|+.||..+||+||++|+++|++++|.++|++|. +||.++||+||.+|.+.|+.+. +++++.+|...|+.
T Consensus 314 ~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~-----A~~lf~~M~~~g~~ 386 (857)
T PLN03077 314 VVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDK-----ALETYALMEQDNVS 386 (857)
T ss_pred HHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHH-----HHHHHHHHHHhCCC
Confidence 876 6899999999999999999999999999999999 8999999999999999999888 66677777888999
Q ss_pred cccccccccCchhhhhcccccchHHHHHHHHhhcCCCCCe--------EEeeccccccCchhhHHHHhhhhcCceeeec
Q 043265 171 PYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRT--------LRIKKNLRICGECHNFIKKLSSIENREIIVR 241 (245)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 241 (245)
||..++...+....+ .+.++.+..+...+...+ ..++++|.+||++++|.++|++|.+++++.+
T Consensus 387 Pd~~t~~~ll~a~~~-------~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 387 PDEITIASVLSACAC-------LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred CCceeHHHHHHHHhc-------cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence 999999888775433 333344444333332111 1367788888888888888888887776643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=255.75 Aligned_cols=178 Identities=14% Similarity=0.127 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
||+++|.+|++.++++.|.+++..|.+.|+.||..+||.|+.+|++.|.++.|.++...-..||..|||++|.+|++.|+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 46777777777777777777777777777777777777777777777777777777666666777777777777777777
Q ss_pred HHHHHHHHHHhhhh----------------------------------cCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 81 VDEGFQHFESVTRD----------------------------------YDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 81 ~~~a~~~~~~m~~~----------------------------------~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+++|.++|++|.+. .|+.||..+||+||++|+++|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 77777777777541 34556666778999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCcccccccccccccccccCCcccccccccccCchhh
Q 043265 127 MQIDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEA 184 (245)
Q Consensus 127 m~~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 184 (245)
|+ ++|+++||+||.+|++.|+.+. +++++.+|...|+.||..+|...+....
T Consensus 285 m~-~~~~vt~n~li~~y~~~g~~~e-----A~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 285 MP-EKTTVAWNSMLAGYALHGYSEE-----ALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred CC-CCChhHHHHHHHHHHhCCCHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99 8999999999999999999988 6677777788899999999887776543
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.57 E-value=6.4e-15 Score=89.01 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=47.5
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhc
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGR 113 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~ 113 (245)
||..+||++|.+|++.|++++|.++|++|.+ .|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999987 7999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=1.4e-14 Score=87.44 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMD 46 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~ 46 (245)
|||++|++|++.|++++|.++|++|++.|++||..||+++|++|++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999999999999985
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=3.9e-13 Score=112.08 Aligned_cols=231 Identities=12% Similarity=0.150 Sum_probs=166.5
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
||.+||.++||--..+.|.+++++-.....+.+..+||.+|.+-+-...-+...+|....++||..|||+++++..+.|+
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 68899999999999999999999999888889999999999998888788889999999999999999999999999998
Q ss_pred HHH----HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHH-HHHHHHhc----C---CC---C-cHHHHHHHHHHHH
Q 043265 81 VDE----GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE-AREFIRNM----Q---ID---A-SSVVWETLEKYAQ 144 (245)
Q Consensus 81 ~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~-a~~~~~~m----~---~~---~-~~~~~~~li~~~~ 144 (245)
++. |.+++.+|++ .|++|...+|..+|..+.+-++..+ |..+..++ . ++ | |..-|.+-++-|.
T Consensus 289 F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred hHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 876 4668889988 8999999999999999999888754 33333322 1 22 2 5567788888888
Q ss_pred hCCCCccccccc-ccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCC--------eEEeec
Q 043265 145 TEPGLLLGEPSS-SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGR--------TLRIKK 215 (245)
Q Consensus 145 ~~g~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~--------~~~l~~ 215 (245)
...|.+.|+.+. +++...+-+..|--.....|.... ..+.+..+.++.-+..-.++..+ .+.++.
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~------~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF------FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 888888888766 554433332222211112222211 22333444444444444444211 123555
Q ss_pred cccccCchhhHHHHhhhhcCcee
Q 043265 216 NLRICGECHNFIKKLSSIENREI 238 (245)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~ 238 (245)
+....|.++-.-+++.++..-|.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhh
Confidence 56666777777777777766553
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=4e-11 Score=65.83 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=21.7
Q ss_pred CCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 96 DINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 96 ~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
|+.||.+|||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666663
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.13 E-value=6.3e-11 Score=65.04 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=32.3
Q ss_pred cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhh
Q 043265 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVT 92 (245)
Q Consensus 59 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 92 (245)
+|++||..|||+||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.4e-09 Score=89.78 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=132.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-------hHHHHHHH-------------------HhcCCCC
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-------LLEAGKRF-------------------ENDGVRP 63 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-------~~~~~~~~-------------------~~~~~~p 63 (245)
...|.+.++.-+|+.|++.|+..+.-.--.|++.-+-.+ .++.+.+| ...-.+-
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 456789999999999999999888777777776644331 34455444 2223345
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLE 140 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li 140 (245)
...||++||.+.|+.-+.+.|.+++++-.+ ...+.+..++|.+|.+-+-. ...++..+|. +.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 788999999999999999999999999877 57788999999998775532 2366777773 689999999999
Q ss_pred HHHHhCCCCcccccccccccccccccCCcccccccccccCchhhh
Q 043265 141 KYAQTEPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDLDQEAK 185 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 185 (245)
+..+++|+++.+... +++..++|+..|+.|.-.+|...+....+
T Consensus 281 ~c~akfg~F~~ar~a-alqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKA-ALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HHHHHhcchHHHHHH-HHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 999999998876554 77788999999999999888766654433
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.00 E-value=7.2e-09 Score=89.15 Aligned_cols=158 Identities=16% Similarity=0.065 Sum_probs=110.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH----HhcCCCCc----HhhHHHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF----ENDGVRPN----WSTFVGVIT 73 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~----~~~~~~p~----~~t~~~ll~ 73 (245)
++.+...|.+.|++++|+++|.++.+.. .++..+++.+...|.+.|.++.|.+. .+.+..++ ...|..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4567788888899999999998887652 34677888888888888877777554 22222221 123556667
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHhCCCC
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS--SVVWETLEKYAQTEPGL 149 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~--~~~~~~li~~~~~~g~~ 149 (245)
.+.+.|++++|..+|+++.+. .|+ ...+..+...|.+.|+.++|.++|+++. ..|+ ..+++.+..+|...|+.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 189 QALARGDLDAARALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 778888888888888887552 233 4567777888888888888888888775 2344 35577777888888888
Q ss_pred ccccccc--ccccccc
Q 043265 150 LLGEPSS--SLRLSNK 163 (245)
Q Consensus 150 ~~~~~~~--~~~~~~~ 163 (245)
+.|.... +.+..|+
T Consensus 266 ~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 266 AEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8776655 4444443
No 14
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=98.99 E-value=4.6e-10 Score=79.67 Aligned_cols=74 Identities=55% Similarity=0.957 Sum_probs=59.7
Q ss_pred cCCcccccccccccCchhhh--------hcccccchHHHHHHHHhhcCCCCCeEEeeccc-cccCchhhHHHHhhhhcCc
Q 043265 166 DAGYMPYTEYVLRDLDQEAK--------EKPQTYRSERLAVAYGLISTPPGRTLRIKKNL-RICGECHNFIKKLSSIENR 236 (245)
Q Consensus 166 ~~g~~~~~~~~~~~l~~~~~--------~~~~~~~~~~l~~a~~l~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 236 (245)
..|+.|+.......+....+ ...+..|+++|++|+++++. .++++. +.|+|||++.+++++..+|
T Consensus 29 ~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~R 102 (116)
T PF14432_consen 29 EEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGR 102 (116)
T ss_pred HcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHHHHHHHCe
Confidence 45666666655555444322 34578899999999999887 478888 9999999999999999999
Q ss_pred eeeeccCCC
Q 043265 237 EIIVRDKTT 245 (245)
Q Consensus 237 ~~~~~~~~~ 245 (245)
.|+|||.+|
T Consensus 103 eIiVRD~~r 111 (116)
T PF14432_consen 103 EIIVRDSNR 111 (116)
T ss_pred EEEEeCCCe
Confidence 999999987
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=1e-08 Score=88.16 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=111.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDS----PDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITA 74 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~ 74 (245)
++.+...|.+.|++++|.++|..+.+.+-.++. ..|..+...+.+.|.++.|.+..... ..| +...+..+...
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 567888888888898898888888876544332 23455666677777777776553331 223 35567777788
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCcccc
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~ 153 (245)
+.+.|++++|.++|+++... +-.....+++.+..+|.+.|+.++|...++++. ..|+...+..+...+...|+.+.|.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 88888888888888887652 211123567788888888888888888888774 4577666777778888888888776
Q ss_pred ccc--cccccc
Q 043265 154 PSS--SLRLSN 162 (245)
Q Consensus 154 ~~~--~~~~~~ 162 (245)
... +++..|
T Consensus 303 ~~l~~~l~~~P 313 (389)
T PRK11788 303 ALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHhCc
Confidence 655 444433
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.91 E-value=2.5e-08 Score=93.62 Aligned_cols=150 Identities=9% Similarity=-0.019 Sum_probs=71.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~g 79 (245)
..+...|.+.|++++|.++|.++.+.. +.+..++..+...+...|.++.+.++.+. ..+++...+..+...+.+.|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 344555666666666666666655432 12345555555555555555555443211 12233444455555555555
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++++|.+.|..+.. ..|+..++..+..+|.+.|+.++|.+.++++. .+.+...++.+...|...|+.+.|...+
T Consensus 718 ~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 718 DYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 55555555554433 12333444445555555555555555444442 1223344444444444445544444433
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.88 E-value=3.7e-09 Score=58.22 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDS 34 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~ 34 (245)
|||+||.+|++.|++++|.++|.+|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.75 E-value=1.5e-07 Score=88.38 Aligned_cols=121 Identities=9% Similarity=0.082 Sum_probs=60.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g 79 (245)
..+...|.+.|++++|.++++++.+.. ..+..+|..+...|.+.|.++.+....+.. .+.+...+..+..++.+.|
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 345566666666666666666665432 334556666666666666555554432211 1123444555555555555
Q ss_pred cHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 80 AVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
++++|..+|+.+.+ ..| +..++..+...+.+.|++++|..+++.+
T Consensus 650 ~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 650 NYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 122 2344444444444444444444444444
No 19
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.73 E-value=1.8e-08 Score=55.13 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFL 32 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p 32 (245)
|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999999999999988
No 20
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=6.8e-08 Score=51.58 Aligned_cols=30 Identities=33% Similarity=0.605 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGI 30 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~ 30 (245)
|||+||++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999885
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.53 E-value=4.9e-08 Score=88.36 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHH---HHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcC
Q 043265 20 EVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGK---RFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYD 96 (245)
Q Consensus 20 ~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~---~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 96 (245)
.++..+...|+.|+.+||..+|.-||..|+.+.|- -|+-...+.+...|++++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 34556666777777777777777777666665543 3444455556666777777777777665544
Q ss_pred CCcchHHHHHHHHHHhccCCHHH
Q 043265 97 INPTLEHFLGIVDLYGRLQKIAE 119 (245)
Q Consensus 97 ~~p~~~~~~~li~~y~~~g~~~~ 119 (245)
+|...||+.|..+|..+|++..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 4556677777777777776654
No 22
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.52 E-value=1.3e-07 Score=51.78 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.4
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL 101 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 101 (245)
.|||++|.+|++.|++++|.++|++|.+ .|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCC
Confidence 4799999999999999999999999987 6999984
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.41 E-value=3.7e-07 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.544 Sum_probs=30.2
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINP 99 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 99 (245)
.||+++|.+|++.|+++.|.++|++|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence 6899999999999999999999999988 68887
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.40 E-value=1.7e-05 Score=62.23 Aligned_cols=153 Identities=13% Similarity=-0.010 Sum_probs=115.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC---CCcHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV---RPNWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~---~p~~~t~~~ll~~~~~~g 79 (245)
..+-..|.+.|++++|.+.|++..+.. +.+...+..+...|...|.++.+.+..+..+ +.+...+..+-..+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 445677889999999999999987653 2346778888888888898888876543322 335667888888999999
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++++|.+.++..............+..+-.+|.+.|+.++|...|.+.. ..| +...|..+...+...|+.+.|....
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999987532222234567778889999999999999998764 333 4567777778888888888866544
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.39 E-value=1.6e-06 Score=78.79 Aligned_cols=145 Identities=13% Similarity=0.024 Sum_probs=107.3
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhc------------------------CCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNI------------------------GIFLDSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~------------------------g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
||..+|.-||..|+++.|- +|..|+-+ --+|.+.||+.|+.+|+.+|++..++.+
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli~fe~v 105 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLILFEVV 105 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchHHHHHH
Confidence 6889999999999999998 77776211 1257789999999999999977766543
Q ss_pred --------------------------------------------------------------------------------
Q 043265 57 -------------------------------------------------------------------------------- 56 (245)
Q Consensus 57 -------------------------------------------------------------------------------- 56 (245)
T Consensus 106 eqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n 185 (1088)
T KOG4318|consen 106 EQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN 185 (1088)
T ss_pred HHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCC
Confidence
Q ss_pred ---------HhcCC-CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 57 ---------ENDGV-RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 57 ---------~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
.+.+. .|+..+|.+++.+-.-.|+++.|..++.+|++ .|+..+..-|-.|+-+ .++...++.+...
T Consensus 186 tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpir~HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 186 TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPIRAHYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCcccccchhhhhc---CccchHHHHHHHH
Confidence 11222 48888888888888888888888888888877 5887777656666655 5666666666666
Q ss_pred cC---CCCcHHHHHHHHHHHHhCCCCc
Q 043265 127 MQ---IDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 127 m~---~~~~~~~~~~li~~~~~~g~~~ 150 (245)
|. ++|+..|+.--+..|..+|...
T Consensus 262 mqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 262 MQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 64 6788888887777776655433
No 26
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.24 E-value=1.3e-06 Score=46.41 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=21.3
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
+|||++|++|++.|++++|.++|++|.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 3677777777777777777777777766
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.21 E-value=2.5e-05 Score=71.58 Aligned_cols=219 Identities=9% Similarity=0.025 Sum_probs=135.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccC
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g 79 (245)
.+-..+...|++++|+..|++..+. .|+ ...|..+-..+...|.++.|....... ..| +...|..+-..+...|
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344556678888888888887654 344 456777777777777777776543321 223 4677788888888888
Q ss_pred cHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++++|...|+.... +.|+ ...+..+-.+|.+.|++++|...|++.. ..| +...|+.+-..+...|+++.|...+
T Consensus 414 ~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 414 EFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888887754 3453 5667777888888888888888887663 334 4567777778888888888877666
Q ss_pred --ccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcC----CCCCe---EEeeccccccCchhhHH
Q 043265 157 --SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLIST----PPGRT---LRIKKNLRICGECHNFI 227 (245)
Q Consensus 157 --~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~----~~~~~---~~l~~~~~~~g~~~~a~ 227 (245)
++++.|+.. +...+...+..... ......+.+..|..+.+. -|... ..+-..|...|+.+.|+
T Consensus 491 ~~Al~l~p~~~--~~~~~~~~l~~~a~------~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 491 DTAIELEKETK--PMYMNVLPLINKAL------ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHhcCCccc--cccccHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 555544321 11111110000000 011112333444333322 12222 23566677889999999
Q ss_pred HHhhhhcC
Q 043265 228 KKLSSIEN 235 (245)
Q Consensus 228 ~~~~~~~~ 235 (245)
+.|++..+
T Consensus 563 ~~~e~A~~ 570 (615)
T TIGR00990 563 KLFERAAE 570 (615)
T ss_pred HHHHHHHH
Confidence 99987643
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.19 E-value=9.4e-05 Score=58.00 Aligned_cols=150 Identities=9% Similarity=0.017 Sum_probs=113.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC-----CCcHhhHHHHHHHhc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV-----RPNWSTFVGVITACG 76 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~-----~p~~~t~~~ll~~~~ 76 (245)
+..+-..|.+.|++++|.+.|.+..+.+- .+...+..+-..+...|.++.+.+.....+ ..+...+..+-..+.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 34566788899999999999999887643 355677788888888898888877544322 223456777888899
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCcccc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~ 153 (245)
..|++++|.+.+++.... .| +...+..+...|.+.|++++|...+++.. . +.+...+..+...+...|+.+.+.
T Consensus 147 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999988652 33 45678889999999999999999998764 2 345566666667777778877755
Q ss_pred cc
Q 043265 154 PS 155 (245)
Q Consensus 154 ~~ 155 (245)
..
T Consensus 224 ~~ 225 (234)
T TIGR02521 224 RY 225 (234)
T ss_pred HH
Confidence 43
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.17 E-value=2.4e-05 Score=64.45 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=95.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc-HhhHHHHHHHhccc
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIG-IFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPN-WSTFVGVITACGCF 78 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~-~~t~~~ll~~~~~~ 78 (245)
..++..+.+.++++++.++++...... ..++...|..+-..+.+.|..+.|.+..+.. ..|+ ....+.++..+...
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 456677888888999998888876432 3457777888888888888888887765543 3464 66778888888888
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|+.+++.+++...... ...|...+..+-.+|...|+.++|...|++.. ..| |+.+...+-.++...|+.+.|..+.
T Consensus 194 ~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9888888888877653 23455667888888888999999999888764 345 4444444558888888888876654
No 30
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=6e-05 Score=52.42 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhh------------hHHHHHHHHhcCCCCcHhhHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLK------------LLEAGKRFENDGVRPNWSTFVG 70 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~------------~~~~~~~~~~~~~~p~~~t~~~ 70 (245)
..|..+...+++....-+|+.+++.|+ .|+..+|+.+|.+-++.. .+.-+..|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 346666677999999999999999999 899999999998877642 1112233445555555555555
Q ss_pred HHHHh
Q 043265 71 VITAC 75 (245)
Q Consensus 71 ll~~~ 75 (245)
+|...
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55443
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.01 E-value=0.0002 Score=66.16 Aligned_cols=143 Identities=8% Similarity=-0.133 Sum_probs=72.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcH-hhHHHHHHHhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNW-STFVGVITACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~-~t~~~ll~~~~~~g~~~ 82 (245)
-..+.+.|++++|...|++..... ..+...+..+...+...|.++.|...... ...|+. ..+.. +..+.+.|+++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~ 194 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLP 194 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHH
Confidence 345556666666666666665431 12345555666666666666655443211 122222 22222 22355666666
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcc
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~ 151 (245)
+|..+++.+... .-.++...+..+...+.+.|+.++|...|.... ..| +...+..+-..+...|+.+.
T Consensus 195 eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 195 EDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh
Confidence 666666665432 111223333444556666677777766666553 233 34444455566666666654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.00 E-value=7.4e-06 Score=67.50 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
.++++.|.+.++++...+.. ++..+..++.. ...+.++.+.++...++ .++...+..++..+.+.++++++.++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34455555555555443322 22333333333 34444444444333321 2333444444444555555555555555
Q ss_pred HhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcc
Q 043265 90 SVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 90 ~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~ 151 (245)
.........++...|..+-..|.+.|+.++|.+.+++.- ..|+ ....+.++..+...|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 443322223344444445555555555555555554432 2332 3444444444444444433
No 33
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00018 Score=62.23 Aligned_cols=125 Identities=15% Similarity=0.057 Sum_probs=96.3
Q ss_pred HHHHHH---hcCCCCCHHHHHHHHHHhhhhhhHHHHHHH----Hhc--CCCCcHhhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 21 VMDKLK---NIGIFLDSPDIIELLNVCMDLKLLEAGKRF----END--GVRPNWSTFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 21 lf~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~----~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
++..|. ..+...+......+++.+.....++.++.. ... .+..-..|..++|+.|...|..+.+.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 455553 234556888999999999999888887664 222 44444556679999999999999999999877
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhC
Q 043265 92 TRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQTE 146 (245)
Q Consensus 92 ~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~~~ 146 (245)
.. +||-||.+++|.||+.+.+.|++..|.++...|- .-.+..|+.--+.+|.+.
T Consensus 130 ~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66 9999999999999999999999999999998774 223445555555555554
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.90 E-value=0.00042 Score=66.43 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=93.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHhhHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~t~~~ll~~~~~~g~~~~a 84 (245)
.+.+.|++++|.+.|+...+.+ |+ ...+..+.....+.|.+++|....+. ...|+...|..+-..+.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4455566666666666655443 22 22222222223233666666554333 3346677777777777888888888
Q ss_pred HHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc--ccc
Q 043265 85 FQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS--SLR 159 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~--~~~ 159 (245)
...+++..+ ..|+ ...++.+-.++...|+.++|...|++.- ..| +...+..+-.++...|+.+.|...+ +++
T Consensus 629 ~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888777654 3453 4556666677777888888888777653 344 3455666667777778877777666 666
Q ss_pred ccccc
Q 043265 160 LSNKK 164 (245)
Q Consensus 160 ~~~~~ 164 (245)
+.|+.
T Consensus 706 l~P~~ 710 (987)
T PRK09782 706 DIDNQ 710 (987)
T ss_pred cCCCC
Confidence 66666
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.85 E-value=0.00061 Score=62.96 Aligned_cols=155 Identities=8% Similarity=-0.018 Sum_probs=110.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHH----HHHHHhc--CCCC-cHhhHHHHHHHhccc
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEA----GKRFEND--GVRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----~~~~~~~--~~~p-~~~t~~~ll~~~~~~ 78 (245)
...+.+.|++++|++.|.+....+ ..+...+..+-.++.+.|.+++ |....+. ...| +...+..+-..+.+.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 456667788888888888777653 2245666667777777776664 3333222 2334 467888889999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHH-HHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETL-EKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~l-i~~~~~~g~~~~~~~~ 155 (245)
|++++|...+++... ..|+ ...+..+..+|.+.|++++|...|+.+. ..|+...+... -.++...|+.+.|...
T Consensus 298 g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 298 GQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998865 3454 4556778899999999999999998875 46765554443 3677888998888877
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
+ +++..|+.
T Consensus 375 l~~al~~~P~~ 385 (656)
T PRK15174 375 FEHYIQARASH 385 (656)
T ss_pred HHHHHHhChhh
Confidence 7 66666654
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.83 E-value=0.00032 Score=67.20 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=105.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc-HhhHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPN-WSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~-~~t~~~ll~~~~~~g~~~~a 84 (245)
.+.+.|++++|...|+++... .|+...+..+..++.+.|+++.|.+....- ..|+ ...+..+.....+.|++++|
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 345788999999999887543 344455666666777778877776543221 1232 33333334444556999999
Q ss_pred HHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH-HHHHHHHHHHHhCCCCccccccc--cccc
Q 043265 85 FQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS-VVWETLEKYAQTEPGLLLGEPSS--SLRL 160 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~-~~~~~li~~~~~~g~~~~~~~~~--~~~~ 160 (245)
...+++..+ ..|+...|..+-.++.+.|+.++|...|++.. ..|+. ..++.+-.++...|+.+.|.... ++++
T Consensus 596 l~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987754 46777888888899999999999999998774 55654 44555556788888888877766 7777
Q ss_pred cccc
Q 043265 161 SNKK 164 (245)
Q Consensus 161 ~~~~ 164 (245)
.|+.
T Consensus 673 ~P~~ 676 (987)
T PRK09782 673 LPDD 676 (987)
T ss_pred CCCC
Confidence 7665
No 37
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00093 Score=57.51 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCC---CcHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR---PNWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~---p~~~t~~~ll~~~~~~g~ 80 (245)
+++..+...++++.|.++|+++.+.. |++ ...+.+.+-..+.-.+|.++....++ -|......-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 56777788899999999999999876 554 34466666655555556555444433 244555555666889999
Q ss_pred HHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhcCCC
Q 043265 81 VDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQID 130 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~~~ 130 (245)
.+.|..+.++..+ ..|+. .+|..|..+|.+.|++++|+..++.+++-
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999998854 67865 59999999999999999999999999843
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.74 E-value=0.0014 Score=56.98 Aligned_cols=149 Identities=11% Similarity=-0.018 Sum_probs=90.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHhhhhhhHHHHHHHHh---cCCCCcHhhHHHHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDS-------PDIIELLNVCMDLKLLEAGKRFEN---DGVRPNWSTFVGVI 72 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~~~~~~~---~~~~p~~~t~~~ll 72 (245)
..+...|.+.|+|++|.+++..+.+.+..++. .+|..++..-....+.+...++.+ ...+.++.....+.
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A 270 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMA 270 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHH
Confidence 45678899999999999999999988765332 133333333333323333333211 12344666777777
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHH-HHHHHHHhCCCCc
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWE-TLEKYAQTEPGLL 150 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~-~li~~~~~~g~~~ 150 (245)
.++...|+.++|.+++++..+ ..||.. -.++.+....++.+++.+..+... ..||..... ++=..|...++++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 777888888888877776644 233331 223444445577777777776663 345544433 3337777777777
Q ss_pred cccccc
Q 043265 151 LGEPSS 156 (245)
Q Consensus 151 ~~~~~~ 156 (245)
.|+..+
T Consensus 346 ~A~~~l 351 (398)
T PRK10747 346 EASLAF 351 (398)
T ss_pred HHHHHH
Confidence 776665
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=97.72 E-value=0.0013 Score=59.62 Aligned_cols=77 Identities=12% Similarity=-0.095 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
++++|...+++..+.+- -+...+..+-..+...|.++.|....+. ...|+ ...+..+-..+...|+.++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555444321 1233344443344444444444433222 12222 33344444444555555555555554
Q ss_pred h
Q 043265 91 V 91 (245)
Q Consensus 91 m 91 (245)
.
T Consensus 398 A 398 (553)
T PRK12370 398 C 398 (553)
T ss_pred H
Confidence 4
No 40
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00022 Score=61.65 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhhhhhHHHHHHHHh----cCCCCcHhhHHHHHHHhcc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI--GIFLDSPDIIELLNVCMDLKLLEAGKRFEN----DGVRPNWSTFVGVITACGC 77 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~----~~~~p~~~t~~~ll~~~~~ 77 (245)
..++.+....+++.+..++.+.+.. ....-..|..++++.|-+.|..+.+..|.. .|+-||..|||.||..+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 4556666667788899999888755 222223445699999999999999988854 5999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhcc
Q 043265 78 FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL 114 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~ 114 (245)
.|++..|.++..+|.. .+...+..|+..-+.++.+.
T Consensus 151 ~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 9999999999999977 45556667776666665554
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.66 E-value=0.002 Score=59.16 Aligned_cols=157 Identities=11% Similarity=0.009 Sum_probs=111.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~ 78 (245)
|..+-..+...|++++|...|++..+.+ .-+...|..+-..+...|.++.|....+.. ..| +...+..+-..+.+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 3445566788999999999999987653 234678888888888889999887764432 334 466777788888999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH--------HHHHHHHHHHHhCCC
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS--------VVWETLEKYAQTEPG 148 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~--------~~~~~li~~~~~~g~ 148 (245)
|++++|...|++..+ ..| +...|+.+-.+|...|++++|.+.|+.-. ..|+. ..++.....+...|+
T Consensus 447 g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 447 GSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 999999999998865 234 46778889999999999999999998743 33431 112222233344577
Q ss_pred Cccccccc--cccccc
Q 043265 149 LLLGEPSS--SLRLSN 162 (245)
Q Consensus 149 ~~~~~~~~--~~~~~~ 162 (245)
++.|.... ++++.|
T Consensus 524 ~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 524 FIEAENLCEKALIIDP 539 (615)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 77766655 454433
No 42
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.00057 Score=53.27 Aligned_cols=86 Identities=13% Similarity=0.192 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHhhhh-----hhHHHH----HHHHhcCCCCcHhhHHHHHHHhccc----------------CcHHHHH
Q 043265 31 FLDSPDIIELLNVCMDL-----KLLEAG----KRFENDGVRPNWSTFVGVITACGCF----------------GAVDEGF 85 (245)
Q Consensus 31 ~p~~~t~~~ll~~~~~~-----~~~~~~----~~~~~~~~~p~~~t~~~ll~~~~~~----------------g~~~~a~ 85 (245)
..+..+|..+++.|.+. |.++-. ..|.+-|+.-|..+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34778888888888765 444432 4577888888888888888887542 2456789
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHHHhccCCH
Q 043265 86 QHFESVTRDYDINPTLEHFLGIVDLYGRLQKI 117 (245)
Q Consensus 86 ~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~ 117 (245)
+++++|+. +|+.||..|+..+++.|++.+..
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 99999977 89999999999999999998863
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00071 Score=58.06 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=78.1
Q ss_pred CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHH
Q 043265 61 VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWET 138 (245)
Q Consensus 61 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~ 138 (245)
++-|+...+-|-.-|-+.|+-..|.+.+-+- +...| ++.|..=|-.-|.....++.|...|++-. ++|+.+-|..
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4456888888899999999998888877543 33444 56777777788888888999999999886 7999999999
Q ss_pred HH-HHHHhCCCCccccccc--cccccccc
Q 043265 139 LE-KYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 139 li-~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
|| +++++.|+..+|-... ..+-+|+.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 99 6668889988865544 45555554
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.54 E-value=0.0025 Score=59.98 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=110.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CCH-HHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc-----HhhHHHHHHHhc
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIF-LDS-PDIIELLNVCMDLKLLEAGKRFENDG--VRPN-----WSTFVGVITACG 76 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~-p~~-~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~-----~~t~~~ll~~~~ 76 (245)
+.++...|++++|+..|+.+.+.+-. |+. ..+ +-.+|...|.++.|....+.- ..|. ......+..++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 34556778999999999999887632 432 222 455777888888886653321 1222 244666777889
Q ss_pred ccCcHHHHHHHHHHhhhhcC----------CCcc---hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHH
Q 043265 77 CFGAVDEGFQHFESVTRDYD----------INPT---LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEK 141 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~ 141 (245)
..|++++|.++++.+..... -.|+ ...+..+...+...|+.++|.+++++.. ..| +...+..+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999998865311 1123 2345567788889999999999999874 334 4677777888
Q ss_pred HHHhCCCCccccccc--cccccccc
Q 043265 142 YAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 142 ~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.+...|+.+.|.... ++.+.|+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 888889988888776 66666655
No 45
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.0017 Score=50.73 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred hhHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh--------------------hhHHHHHHH
Q 043265 2 LNSELKHLCRE-----REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL--------------------KLLEAGKRF 56 (245)
Q Consensus 2 ~n~ll~~~~~~-----g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~--------------------~~~~~~~~~ 56 (245)
|..+|..|.+. |.++=...-+..|.+.|+.-|..+|+.||+.+=+. -+++...+|
T Consensus 50 F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qM 129 (228)
T PF06239_consen 50 FLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQM 129 (228)
T ss_pred HHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHH
Confidence 55566666654 67777777788999999999999999999998664 156667889
Q ss_pred HhcCCCCcHhhHHHHHHHhcccCc-HHHHHHHHHHhhh
Q 043265 57 ENDGVRPNWSTFVGVITACGCFGA-VDEGFQHFESVTR 93 (245)
Q Consensus 57 ~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~ 93 (245)
...|+-||..|+..|+..+++.+. +.+..++.-.|.+
T Consensus 130 E~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 130 ENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 4445555555554
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.53 E-value=0.0018 Score=60.93 Aligned_cols=151 Identities=11% Similarity=0.024 Sum_probs=107.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHH---HHHhcccCcHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDS--PDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGV---ITACGCFGAVD 82 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~l---l~~~~~~g~~~ 82 (245)
-..+.|+++.|+..|.+..+.. |+. ..+ .++..+...|..++|....+.-+.|+...+..+ ...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3568899999999999998764 442 334 888888888999999888777777754444433 44677789999
Q ss_pred HHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc--cc
Q 043265 83 EGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS--SL 158 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~ 158 (245)
+|.++|+++.+. .|+ ...+..++..|.+.++.++|.+.+++.. ..|+...+-.++..+...++...|.... ++
T Consensus 120 ~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999763 343 4556688999999999999999999986 5677666633323332233322233333 77
Q ss_pred cccccc
Q 043265 159 RLSNKK 164 (245)
Q Consensus 159 ~~~~~~ 164 (245)
+..|+.
T Consensus 197 ~~~P~n 202 (822)
T PRK14574 197 RLAPTS 202 (822)
T ss_pred HhCCCC
Confidence 777766
No 47
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.51 E-value=0.00099 Score=48.01 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHH
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLY 111 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y 111 (245)
..++.++|.++++.|.++..+.+.+. |+.++... ..+. ...+....||..+..+++.+|
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHHHH
Confidence 45566666666666666666665443 22221100 0000 233356778888888888888
Q ss_pred hccCCHHHHHHHHHhcC----CCCcHHHHHHHHHHHHh
Q 043265 112 GRLQKIAEAREFIRNMQ----IDASSVVWETLEKYAQT 145 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m~----~~~~~~~~~~li~~~~~ 145 (245)
+.+|++..|.++.+... ++-+..+|..|+.-+..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88888888887776552 45457778888844433
No 48
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.45 E-value=0.0022 Score=46.25 Aligned_cols=27 Identities=4% Similarity=-0.090 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 129 IDASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 129 ~~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
..|+..+-.+++.+++..+++..|..+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 345555555555555555555554443
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.43 E-value=0.0013 Score=64.76 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a 84 (245)
.+.+.|++++|++.|++..+..- .+...+..+-..+...|.++.|.+..+.- ..| +...+..+...+. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 46688999999999999887632 34566777778888888888887754432 223 3444444444442 3445566
Q ss_pred HHHHHHhhhhcCC-------CcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcccccc
Q 043265 85 FQHFESVTRDYDI-------NPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 85 ~~~~~~m~~~~~~-------~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
..+++.+.....- ......+..+...|...|++++|...|++.. ..|+ ...+..+-..|...|+.+.|...
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555543221000 0001123344455555666666666655442 2333 33344444555555555555544
Q ss_pred c
Q 043265 156 S 156 (245)
Q Consensus 156 ~ 156 (245)
.
T Consensus 518 l 518 (1157)
T PRK11447 518 M 518 (1157)
T ss_pred H
Confidence 4
No 50
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.42 E-value=0.0032 Score=56.26 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=108.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~~ 78 (245)
||-|-.++-..|++.+|++.|.+...-.- --..+.+.|-..|...|.++.|.++-.. .+.|. ...+|.|-..|.+.
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 56666666667777777777776654321 1234566666677777777766665332 34444 45677888888888
Q ss_pred CcHHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++++|...+++.. .|.|+- ..|+-|=..|-..|+++.|...+.+-- +.|. ...++-|-+.|...|++..|...
T Consensus 402 gnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 402 GNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred ccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 88888888887653 477763 567777777778888888888776553 4443 35567777888889998888777
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
. ++++.|+-
T Consensus 479 Y~~aLklkPDf 489 (966)
T KOG4626|consen 479 YRTALKLKPDF 489 (966)
T ss_pred HHHHHccCCCC
Confidence 7 88887777
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.40 E-value=0.0095 Score=51.73 Aligned_cols=42 Identities=12% Similarity=-0.022 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCCCCe---EEeeccccccCchhhHHHHhhhhcCc
Q 043265 195 RLAVAYGLISTPPGRT---LRIKKNLRICGECHNFIKKLSSIENR 236 (245)
Q Consensus 195 ~l~~a~~l~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 236 (245)
.+..+....+.-|.++ +.+-..+.+.++...|.+.|++..+.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455555555556554 12334455667777777777776554
No 52
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.40 E-value=0.0012 Score=54.80 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=84.1
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHH---HHHHHHHHhccCCHH
Q 043265 42 NVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEH---FLGIVDLYGRLQKIA 118 (245)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~y~~~g~~~ 118 (245)
..+...|.+++|.+....+ .+.......+..|.+.++++.|.+.++.|.+ +..|... ..+.|+.+.-...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 3455679999999887776 5677778889999999999999999999964 3445332 234455544445789
Q ss_pred HHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc--ccccc
Q 043265 119 EAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 119 ~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~ 161 (245)
+|..+|+++. ..+++.+.|.+..+....|+++.|+.+. +++..
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999999985 4578888898888999999999998776 55443
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.30 E-value=0.0067 Score=57.26 Aligned_cols=159 Identities=11% Similarity=0.022 Sum_probs=108.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---------CCCcHhhHHHHHHHh
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---------VRPNWSTFVGVITAC 75 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---------~~p~~~t~~~ll~~~ 75 (245)
.|.++.+.|+..++++.|+.|+..|......+--.+-++|...+.++.|..+.+.- ..++......|..++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 46678888888888888888888887644457778888888887777776653321 122344457788888
Q ss_pred cccCcHHHHHHHHHHhhhhcCC------------Ccch-HHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHH
Q 043265 76 GCFGAVDEGFQHFESVTRDYDI------------NPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLE 140 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~------------~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li 140 (245)
...+++++|..+++.+...... .||- ..+..++..+.-.|++.+|++.++++. . +-|...+..+-
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888888888888888652221 1221 223456777788888888888888884 2 33566667777
Q ss_pred HHHHhCCCCccccccc--ccccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
..+...|....|+... +..+.|+
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 8888888877777655 4433443
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.27 E-value=0.014 Score=57.53 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=55.2
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHH
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETL 139 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~l 139 (245)
++...+..+-..+.+.|+.++|.+.|+...+ ..| +...+..+..+|...|+.++|...++... ..|+ ..++..+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3444555666666677777777777776654 233 34566667777777777777777776554 2333 3344444
Q ss_pred HHHHHhCCCCccccccc
Q 043265 140 EKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 140 i~~~~~~g~~~~~~~~~ 156 (245)
-.++...|+.+.|....
T Consensus 678 a~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 45666666666665554
No 55
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.24 E-value=0.001 Score=60.33 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=97.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
.+-..+..|.+|+.+++.++.+.+.. --|..+.+.|+..|.++.++++...+ .-|+-.|..|.+.|.+++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHH
Confidence 44556678888888888888776532 23778888999999999998875442 345667888999999999998
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+-++. .|-+.++..|-+-..-+-++|++.+|++++-.+. .||.. |..|-++|..+.
T Consensus 813 la~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~a-----iqmydk~~~~dd 868 (1636)
T KOG3616|consen 813 LAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKA-----IQMYDKHGLDDD 868 (1636)
T ss_pred HHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHH-----HHHHHhhCcchH
Confidence 87655 4666778888888888889999999999998887 77743 456667665554
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0028 Score=56.61 Aligned_cols=120 Identities=9% Similarity=0.043 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHH---HHhc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVI---TACG 76 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll---~~~~ 76 (245)
||.++=++|.-.++.+.|++.|.+...-+ | ...+|+.+=.=+.....+|.|..-.+..+.+|+..||+.- -.|.
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 57777778888889999999998875432 3 3455554433344455666666666666666666666543 2455
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
+.++++.|+-.|+.. ..|.|. .+....+-..|-+.|+.|+|+.+|+
T Consensus 501 Kqek~e~Ae~~fqkA---~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKA---VEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred ccchhhHHHHHHHhh---hcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 666666666666544 235553 3334445555555555555555554
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.17 E-value=0.014 Score=50.82 Aligned_cols=150 Identities=9% Similarity=-0.039 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-------hhhhhHHHHHHHHhcC---CCCcHhhHHHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVC-------MDLKLLEAGKRFENDG---VRPNWSTFVGVIT 73 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~-------~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~ 73 (245)
.+...|.+.|++++|.+++..+.+.++.++...-..-..++ ......+...++.... .+.+...+..+..
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 56678999999999999999999987643332211111211 1111222333333222 1136777778888
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcchHHH-HHHHHHH--hccCCHHHHHHHHHhcC-CCCcHH--H-HHHHHHHHHhC
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPTLEHF-LGIVDLY--GRLQKIAEAREFIRNMQ-IDASSV--V-WETLEKYAQTE 146 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~y--~~~g~~~~a~~~~~~m~-~~~~~~--~-~~~li~~~~~~ 146 (245)
.+...|+.++|.+++++..+. .||.... -.++..+ ...++.+.+.+.++... ..|+.. . ..++=..|.+.
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 888888888888888777542 3443210 0122222 23456666666665543 344443 3 33444666677
Q ss_pred CCCccccccc
Q 043265 147 PGLLLGEPSS 156 (245)
Q Consensus 147 g~~~~~~~~~ 156 (245)
|+++.|...+
T Consensus 349 ~~~~~A~~~l 358 (409)
T TIGR00540 349 GEFIEAADAF 358 (409)
T ss_pred ccHHHHHHHH
Confidence 7777665543
No 58
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.09 E-value=0.0027 Score=56.64 Aligned_cols=96 Identities=7% Similarity=0.068 Sum_probs=50.9
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHH
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKY 142 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~ 142 (245)
..|..|-..|-..|++|.|...+++..+ ..|+ ...|+-|-.++-..|++.+|.+.+.+.- ..|+ .-..+-|=..
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3444444445555666666666654432 3443 2456666666666666666666665442 2222 2344455555
Q ss_pred HHhCCCCccccccc--cccccccc
Q 043265 143 AQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 143 ~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
|+..|.++.|..+. +++++|+-
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhh
Confidence 66666666555555 55555544
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.07 E-value=0.03 Score=52.92 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=105.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~g~~ 81 (245)
.+......|+.++|+++|.+..... ..+...+..+..++.+.|.++.|.+..+.. . +.+...+..+...+...|+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3556778899999999999987622 334556888888888889888887765542 3 33466677888888999999
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcccc
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~ 153 (245)
++|...+++..+. .|+ .. +..+-.+|...|+.++|...+++.. ..|+ ...+..+..++...+..+.|.
T Consensus 100 ~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 100 DEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 9999999988663 443 44 7788889999999999999998874 4555 344455556666666655443
No 60
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.05 E-value=0.01 Score=41.44 Aligned_cols=76 Identities=9% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCC-CcchHHHHHHHHHHhccCCH--------HHHHHHHHhc---CCCCcHHHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDI-NPTLEHFLGIVDLYGRLQKI--------AEAREFIRNM---QIDASSVVW 136 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~y~~~g~~--------~~a~~~~~~m---~~~~~~~~~ 136 (245)
...|..|...+++.....+|+.+++ .|+ .|++.+|+.+++.-++...- -+.+.+++.| +++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 4455556666778788888887776 577 78888888887777765421 1234455555 267888888
Q ss_pred HHHHHHHHh
Q 043265 137 ETLEKYAQT 145 (245)
Q Consensus 137 ~~li~~~~~ 145 (245)
|.+|+...+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888866544
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=96.99 E-value=0.0095 Score=54.05 Aligned_cols=142 Identities=8% Similarity=-0.083 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcH-hhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNW-STFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~-~t~~~ll~~~~~~g~ 80 (245)
.+=..+...|++++|...|++..+.+ ..+...|..+-.++...|.+++|....+. ...|+. ..+..++..+...|+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 34456778899999999999998765 22456777788888889999988776544 344543 233444555677899
Q ss_pred HHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHH-HHHHHHHHhCCC
Q 043265 81 VDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVW-ETLEKYAQTEPG 148 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~-~~li~~~~~~g~ 148 (245)
+++|...+++.... ..|+ ...+..+-.+|...|+.++|...+.++. ..|+..+. +.+-..|...|+
T Consensus 422 ~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 422 IDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 99999999887542 1243 4456778888999999999999998875 34554444 444456666664
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.029 Score=44.89 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=50.2
Q ss_pred HHHHHhhhhhhHHHHHHHHh---cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhcc
Q 043265 39 ELLNVCMDLKLLEAGKRFEN---DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRL 114 (245)
Q Consensus 39 ~ll~~~~~~~~~~~~~~~~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~ 114 (245)
.....-.+.|++..|....+ ..-++|...|+.+=-+|-+.|++++|..-|.+..+ +.| +...+|-|--.|.=.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHc
Confidence 34444444454444443322 23344455555555555555555555555544433 111 122334444444444
Q ss_pred CCHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 115 QKIAEAREFIRNMQI--DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 115 g~~~~a~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|+.++|..++..-.. ..|..+=+.+.-.....|+++.|+.+.
T Consensus 182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555544431 113344444444444445555544443
No 63
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.94 E-value=0.087 Score=38.41 Aligned_cols=126 Identities=10% Similarity=0.130 Sum_probs=95.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
..+|..+.+.+........++.+...|. .+....|.++..|++...-+....+.. .++.....-+++.|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 3578889889999999999999988874 688899999999998754444333332 245555666999999999999
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhcc-CCHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRL-QKIAEAREFIRNMQIDASSVVWETLEKYAQT 145 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~-g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~ 145 (245)
++..++..+.. |...++.+.+. ++.+.|.+++.+-. +...|..++.+|..
T Consensus 87 ~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l~ 137 (140)
T smart00299 87 EAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 99999976633 23344555555 88999999998754 66689999888764
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.012 Score=52.78 Aligned_cols=153 Identities=8% Similarity=0.007 Sum_probs=100.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhhhhhHHH-HHHHHhcCCCCcHhhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGI--FLDSPDIIELLNVCMDLKLLEA-GKRFENDGVRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~-~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
.+|-.-+++++|+++|+..++..- .-+...|+++|...-+.=.+.. ++.+.. --+-.+.||.++=.+|+-.++.+.
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID-TDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh-hCCCCcHHHHHhcchhhhhhHHHH
Confidence 466667889999999999875421 2356788888887755433332 222221 123357889999889999999999
Q ss_pred HHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHH---HHHHhCCCCccccccc--c
Q 043265 84 GFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLE---KYAQTEPGLLLGEPSS--S 157 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li---~~~~~~g~~~~~~~~~--~ 157 (245)
|.+.|+...+ +.| ..++|+.+=.=+.....+|.|...|..-- ..|..-||+.- --|.+.+..+.|+.-+ +
T Consensus 440 Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 440 AIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-cCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 9988876543 455 45666666555666667778888887665 55666666665 3456667777766655 5
Q ss_pred ccccccc
Q 043265 158 LRLSNKK 164 (245)
Q Consensus 158 ~~~~~~~ 164 (245)
+++.|..
T Consensus 516 ~~INP~n 522 (638)
T KOG1126|consen 516 VEINPSN 522 (638)
T ss_pred hcCCccc
Confidence 5554444
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.0067 Score=50.05 Aligned_cols=126 Identities=8% Similarity=0.093 Sum_probs=56.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~ 77 (245)
|-.+|+..-+.+..+.|..+|.+.++.+. ........++|.-++ .++.+.|.++.+.| +.-+..-|..-|.-+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44555556666666666666666654322 222222233332221 12233333333332 23344455555555555
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 78 FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
.++.+.|..+|+.......-.. ....|...++-=.+.|+++.+.++.+++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666655543211111 11355555555555565555555555553
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.86 E-value=0.031 Score=49.79 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=113.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHh-----cCC-CCCH-HHHHHHHHHhhhhhhHHHHHHHHhc-------CCCCc---
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKN-----IGI-FLDS-PDIIELLNVCMDLKLLEAGKRFEND-------GVRPN--- 64 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~-----~g~-~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~-------~~~p~--- 64 (245)
++.|=..|.+.|++++|...+++..+ .|. .|.+ .-++.+...|+..+.++++..+.+. -+.++
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 45566789999999999998888632 222 2333 3456666677888888887665222 22232
Q ss_pred -HhhHHHHHHHhcccCcHHHHHHHHHHhhhhc---CC--Cc-chHHHHHHHHHHhccCCHHHHHHHHHhcC--------C
Q 043265 65 -WSTFVGVITACGCFGAVDEGFQHFESVTRDY---DI--NP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--------I 129 (245)
Q Consensus 65 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~--~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~--------~ 129 (245)
..+|+.|-..|-+.|++.+|+++|++..... +. .+ ....++-|-..|.+.+..++|.++|.+-. .
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~ 445 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD 445 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999999875421 11 22 24567888899999999999999997653 2
Q ss_pred CCc-HHHHHHHHHHHHhCCCCccccccc
Q 043265 130 DAS-SVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 130 ~~~-~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.|+ ..+|..|...|...|+.+.|..+.
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344 377999999999999999987766
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.80 E-value=0.055 Score=45.87 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=104.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHhhhhhhHHH---HHHHHhcCCCCcHhhHHHHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDS-------PDIIELLNVCMDLKLLEA---GKRFENDGVRPNWSTFVGVI 72 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~---~~~~~~~~~~p~~~t~~~ll 72 (245)
+....+|.+.|++.+...+...|.+.|+--|. .+|..+++-....+..+. ..+=+....+-++..-.+++
T Consensus 191 rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 191 RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHH
Confidence 45678999999999999999999999985544 578888887776654444 22223334455566666777
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCcc------------------------------hHHHHHHHHHHhccCCHHHHHH
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDINPT------------------------------LEHFLGIVDLYGRLQKIAEARE 122 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~------------------------------~~~~~~li~~y~~~g~~~~a~~ 122 (245)
.-+.++|+-++|.++..+-.+ .++-|+ ...+.+|=..|.+++.+.+|..
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALK-RQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHH-hccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777777665544 233222 1334555566777777777777
Q ss_pred HHHhc-CCCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 123 FIRNM-QIDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 123 ~~~~m-~~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.|+.- +.+|+..+|+-+-.++...|+...+....
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 77643 35677777777777777777777666554
No 68
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.77 E-value=0.075 Score=40.12 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccC--cHHHHHHHHHHhhhhc
Q 043265 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFG--AVDEGFQHFESVTRDY 95 (245)
Q Consensus 18 A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~ 95 (245)
-.+.+..+.+.|+.|+...|..+++.+.+.|.+....++...++-||.......+-...... -..-|.+.+.++..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~-- 90 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT-- 90 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--
Confidence 35666777889999999999999999999999999999999999999888877775554432 23334444444431
Q ss_pred CCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 96 DINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 96 ~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
.+..+++.+-..|++-+|.++..... ..+......++.|....+|
T Consensus 91 -------~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 91 -------AYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSND 135 (167)
T ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCC
Confidence 56788899999999999999998864 2233333445555544443
No 69
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0088 Score=37.63 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=49.5
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHH
Q 043265 77 CFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEK 141 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~ 141 (245)
..|++++|.++|+.+... .| +...+-.+..+|.+.|++++|..+++... ..|+...|..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999998663 34 56667789999999999999999999996 4677666766653
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.69 E-value=0.017 Score=51.39 Aligned_cols=230 Identities=11% Similarity=0.091 Sum_probs=138.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCCHHHHHH-HHHHhhhhhhHHHHHHH-------Hhc---CCCC-cH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI-----GI-FLDSPDIIE-LLNVCMDLKLLEAGKRF-------END---GVRP-NW 65 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~-----g~-~p~~~t~~~-ll~~~~~~~~~~~~~~~-------~~~---~~~p-~~ 65 (245)
-+-..|...|++++|+.+|....+. |. .|.+.+..- +-..|...+.+++|..+ ... ...| -.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3678999999999999999997654 32 344433222 44455555666655443 222 2333 35
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhh----hcCCC-cchH-HHHHHHHHHhccCCHHHHHHHHHhcC------CCCc-
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTR----DYDIN-PTLE-HFLGIVDLYGRLQKIAEAREFIRNMQ------IDAS- 132 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~-p~~~-~~~~li~~y~~~g~~~~a~~~~~~m~------~~~~- 132 (245)
.+++.|-..|.+.|++++|..+++...+ ..|.. |.+. -++.+...+...+.+++|..++.+-- ..++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 6778888889999999999888775532 12222 3332 35677788888999999999886431 1222
Q ss_pred ---HHHHHHHHHHHHhCCCCccccccc--ccccccccccCCcccccccccccCchhhhhccccc-chHHHHHHHHhh---
Q 043265 133 ---SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTY-RSERLAVAYGLI--- 203 (245)
Q Consensus 133 ---~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~a~~l~--- 203 (245)
..+++.|=..|...|..+.|+..+ ++....+. ..+..+.....+..+.....+..-.. ......++.+..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~-~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL-LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc-ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 367888889999999999988877 44443222 12223333333333333222222222 222233333333
Q ss_pred -cCCCCCe---EEeeccccccCchhhHHHHhhhhc
Q 043265 204 -STPPGRT---LRIKKNLRICGECHNFIKKLSSIE 234 (245)
Q Consensus 204 -~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~ 234 (245)
...|... .-|...|.+-|+.++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2222111 236777889999999999888765
No 71
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.64 E-value=0.073 Score=39.17 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=59.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHhhhhhhHHHHHHH----HhcCCCCcH--hhHHHHHHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIE--LLNVCMDLKLLEAGKRF----ENDGVRPNW--STFVGVITA 74 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~~~~~----~~~~~~p~~--~t~~~ll~~ 74 (245)
..++.++ ..++...+.+.++.+.+.+-.-....... +-..+...|.++.|... ......|+. .....+...
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 3444444 36667777777777665432111111222 22334455666655443 222211211 223334555
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
+...|++++|+..++.... ..+. ...+...=++|.+.|+.++|...|+
T Consensus 95 ~~~~~~~d~Al~~L~~~~~-~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQIPD-EAFK--ALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHcCCHHHHHHHHHhccC-cchH--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666777777777655432 2332 2344556666777777777766665
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.014 Score=48.37 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=113.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CCcHhhH-HHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RPNWSTF-VGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~~~t~-~~ll~~~~~~g~ 80 (245)
-|=++|.+-|.+.+|++.|+.-... .|-+.||-.|-++|.+....+.|..+...|+ .|-.+|| .-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3557899999999999999987765 4566788899999999999999998887764 4555555 556677888899
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.++|.++++...+.. ..++....++-..|.-.++.|.|.+.+.++- + --+...|+.+=-+|...+.+|.+...+
T Consensus 306 ~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999886521 2256667788889999999999999998663 1 335566666655666666777765555
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.54 E-value=0.093 Score=41.51 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=100.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHh--cCCCCcH-hhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEN--DGVRPNW-STFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~--~~~~p~~-~t~~~ll~~~~~~g~~~~ 83 (245)
-+|.+.|+...|.+-+++..++.- -+.-+|..+-..|.+.|..+.+.+.-+ ..+.|+. ..-|.-=--+|..|.+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 578899999999999999988752 245678888888889998888877633 3556643 333333334577889999
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcc
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~ 151 (245)
|...|+...++-..---..||.-+.-+..+.|+.+.|+..|++-- ..|+ ..+.-.|-......|+.-.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999887752222234588899999999999999999997663 3343 3333344444444444333
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.024 Score=49.43 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
-|-++|.+++|++.|....+. .|| ++-|+..-.+|...|+|+.+.++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied 171 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIED 171 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHH
Confidence 466788899999999887764 577 78888888888888888877665
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.40 E-value=0.12 Score=45.07 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcCCC--CcHhh---HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDGVR--PNWST---FVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGI 107 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~--p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 107 (245)
+...+..+...+...|..+.|.+..+...+ ||... ...........++.+.+.+.++...+...-.|+.....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 677888888888888888888776555433 55442 1222222333466777777776654433333322344577
Q ss_pred HHHHhccCCHHHHHHHHHh--c-CCCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 108 VDLYGRLQKIAEAREFIRN--M-QIDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 108 i~~y~~~g~~~~a~~~~~~--m-~~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
=..+.+.|++++|.+.|+. . ...||..++..+-..+...|+.+.|....
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888888888888883 2 35688877777778888888877766555
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.36 E-value=0.014 Score=37.94 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
..+..+...+...+++++|.+.|+..... ...+..++..+...+...|+.++|...|..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444455555555555555544321 111223444445555555555555555443
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.33 E-value=0.14 Score=42.58 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHhhH---HHHHHHhcccCcHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWSTF---VGVITACGCFGAVD 82 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~t~---~~ll~~~~~~g~~~ 82 (245)
.+...|++++|+++++.- .+.......+..|-+.+.++.|.+..+. .+..|.... .+.+......+.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 345578899998887642 3556777788888888999988775432 344443332 23333333345789
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCC
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGL 149 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~ 149 (245)
+|..+|+++.. .+.+++.+.|.+..++...|++++|++++.+.- ..| |..+...++.++...|+.
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 99999999865 456788888999999999999999999887653 233 445555566555555554
No 78
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.32 E-value=0.12 Score=43.97 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHH----HHH-HHhcCCCCcHhhHHHHHHHhccc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEA----GKR-FENDGVRPNWSTFVGVITACGCF 78 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----~~~-~~~~~~~p~~~t~~~ll~~~~~~ 78 (245)
+++.-+.++|+.++|.++..+-.+++-.|...++ -.+.+.++.+. +++ +...+..| ..+.+|=.-|.+.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~ 341 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHh
Confidence 4566778899999999999998888776652222 12223332222 221 24445555 5666666778999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+.+.+|...|+.- ....|+..+|+-+-++|.+.|+.++|..++++-
T Consensus 342 ~~w~kA~~~leaA---l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 342 KLWGKASEALEAA---LKLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHH---HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999844 457899999999999999999999999988754
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.26 E-value=0.27 Score=39.02 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCcHh----hHHHHHHHh
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIF-LD-SPDIIELLNVCMDLKLLEAGKRFENDG--VRPNWS----TFVGVITAC 75 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~~~----t~~~ll~~~ 75 (245)
.+...+.+.|++++|...|++.....-. |. ...+..+-.++.+.|.++.|....+.- ..|+.. ++..+-.++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 3456788899999999999998765321 21 235667777888888888887654332 233222 233333333
Q ss_pred ccc--------CcHHHHHHHHHHhhhhcCCCcchH-HH-----------------HHHHHHHhccCCHHHHHHHHHhcC-
Q 043265 76 GCF--------GAVDEGFQHFESVTRDYDINPTLE-HF-----------------LGIVDLYGRLQKIAEAREFIRNMQ- 128 (245)
Q Consensus 76 ~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~-----------------~~li~~y~~~g~~~~a~~~~~~m~- 128 (245)
... |+.++|.+.|+.+... .|+.. .+ -.+-..|.+.|+.++|...|+...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 332 7889999999988653 34321 11 134567888999999999998763
Q ss_pred CCC----cHHHHHHHHHHHHhCCCCccccccc
Q 043265 129 IDA----SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 129 ~~~----~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
..| ....|..+..++...|+.+.|....
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122 2467888889999999988876544
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.26 E-value=0.23 Score=42.01 Aligned_cols=145 Identities=10% Similarity=0.024 Sum_probs=94.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhcccCcH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIE---LLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGCFGAV 81 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~~g~~ 81 (245)
.+...|++++|.+++++..+.. +.|...+.. ........+..+.+.+.... ...|+ ......+-..+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 4567799999999999987653 223334442 22222223455555554433 22233 23334555678889999
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CC---CcH--HHHHHHHHHHHhCCCCccccc
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-ID---ASS--VVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~---~~~--~~~~~li~~~~~~g~~~~~~~ 154 (245)
++|.+.+++..+ ..|+ ...+..+-.+|...|++++|...+++.. .. |+. ..|-.+-..+...|+.+.|..
T Consensus 131 ~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 131 DRAEEAARRALE---LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred HHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999998865 3344 5667888899999999999999998764 22 232 234456677888899888766
Q ss_pred cc
Q 043265 155 SS 156 (245)
Q Consensus 155 ~~ 156 (245)
..
T Consensus 208 ~~ 209 (355)
T cd05804 208 IY 209 (355)
T ss_pred HH
Confidence 55
No 81
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.23 E-value=0.19 Score=42.24 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=73.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
+.-|.-+...|....|.++-.+. . .||.--|-..+.+++..+.|++..++... +-++.-|-..+.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHH
Confidence 44566667777777776664443 2 36777788888888888888877777554 334477777788888888877
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
+|..+...+ ++.--+..|.++|++.+|-..--+.+
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 777666542 22566777778888877766654444
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.20 E-value=0.28 Score=35.14 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLY 111 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y 111 (245)
.....+...+.+.|..+.+.++.+. .-+.+...+..+-..+.+.|++++|..+++.... . ...+...+-.+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-L-DPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCChHHHHHHHHHH
Confidence 3344555556666777766655332 1233567777777778888888888888887644 2 122455666677788
Q ss_pred hccCCHHHHHHHHHhcC-CCCcHHHHHHHH
Q 043265 112 GRLQKIAEAREFIRNMQ-IDASSVVWETLE 140 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m~-~~~~~~~~~~li 140 (245)
...|+.++|...|+... ..|+...+.-+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 88888888888887664 456655544443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.18 E-value=0.22 Score=41.37 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHH
Q 043265 13 REVKAALEVMDKLKNIG-IFLD--SPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
+..+.++.-|.++.... ..|+ ...|..+-..|.+.|..+.+...... ...| +...|+.+-..+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666665432 2222 23344444455555655555443221 2233 35666666677777777777777
Q ss_pred HHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 87 HFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 87 ~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.|+...+ +.|+ ..+|..+-.+|...|+.++|.+.|+..
T Consensus 120 ~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 120 AFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7766643 3453 455566666666677777777776654
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.13 E-value=0.11 Score=33.47 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=69.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+...+.+.|++++|..+|.+..+..- .+...+..+...+...+.++.+.+..... .+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45566788889999999999999876532 24467777888888888888887754432 233446788888999999
Q ss_pred CcHHHHHHHHHHhhh
Q 043265 79 GAVDEGFQHFESVTR 93 (245)
Q Consensus 79 g~~~~a~~~~~~m~~ 93 (245)
|+.+.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999987643
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.11 E-value=0.034 Score=40.98 Aligned_cols=114 Identities=7% Similarity=0.073 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcC
Q 043265 20 EVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYD 96 (245)
Q Consensus 20 ~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 96 (245)
.+|++..+. .|+ .+...-.++...|.++.+...... ...| +...|..+-.++.+.|++++|...|+....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence 445554443 233 344555666777888877665433 3333 677888888889999999999999988865
Q ss_pred CCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHH
Q 043265 97 INP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLE 140 (245)
Q Consensus 97 ~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li 140 (245)
..| +...+..+-.++.+.|+.++|...|+..- ..|+...|....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344 56778888888999999999999998763 567665555544
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.11 E-value=0.14 Score=37.69 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=42.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhC
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTE 146 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~ 146 (245)
..-.++...|++++|...|+.... +.| +...|..+-.++.+.|++++|...|+..- ..| +...|..+-.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 344445555666666665555432 223 34455555555556666666666555443 222 334444444555555
Q ss_pred CCCccccccc
Q 043265 147 PGLLLGEPSS 156 (245)
Q Consensus 147 g~~~~~~~~~ 156 (245)
|+.+.|...+
T Consensus 106 g~~~eAi~~~ 115 (144)
T PRK15359 106 GEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHH
Confidence 5555555444
No 87
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.36 Score=42.04 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHh---cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEN---DGVRPNWSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
+..+|++++.+..+ -+.-|+...+-|-..|-+.|+-.++-+..= +-++.|..|.-=|-.-|....-++++..+|+.
T Consensus 573 d~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 573 DPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred CHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444433221 233457777778888888887777766532 23556777776666667777778899999986
Q ss_pred hhhhcCCCcchHHHHHHH-HHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCc
Q 043265 91 VTRDYDINPTLEHFLGIV-DLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 91 m~~~~~~~p~~~~~~~li-~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~ 150 (245)
. .-++|+.+-|-.|| +++.+.|++..|.++++... ++.|.-+...|++.|...|--+
T Consensus 652 a---aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 652 A---ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred H---HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 6 35899999999876 56667999999999999885 5678888888888887776544
No 88
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.00 E-value=0.09 Score=43.39 Aligned_cols=127 Identities=12% Similarity=0.125 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcC-----CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDG-----VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
.+|..+++..-+.+.++.++++.... +........++|.- ...++.+.|..+|+...+. +..+...|...|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 57899999999999899888764332 33344444444433 3356777899999998775 4456677899999
Q ss_pred HHhccCCHHHHHHHHHhcC-CCCc----HHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 110 LYGRLQKIAEAREFIRNMQ-IDAS----SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 110 ~y~~~g~~~~a~~~~~~m~-~~~~----~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.+.+.|+.+.|+.+|++.- .-|. ...|...|..=.+.|+++....+. +.+.+++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999875 2233 359999999999999999877777 66666664
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.98 E-value=0.45 Score=38.29 Aligned_cols=121 Identities=13% Similarity=0.013 Sum_probs=80.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH--HhcCCCCc-HhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF--ENDGVRPN-WSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~--~~~~~~p~-~~t~~~ll~~~~~~g~~ 81 (245)
......+.|++..|+..|.+...- -.||..+|+.+=-+|.+.|.++.|+.- +...+.|+ ...+|.|--.+.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 445666677788888887776553 346777777777777777777777652 33344553 45566777777777788
Q ss_pred HHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 82 DEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
+.|..++...... + .-|+..-..+.-+.+..|++++|+++...-.
T Consensus 185 ~~A~~lll~a~l~-~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 185 EDAETLLLPAYLS-P-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHhC-C-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8887777766441 2 2255556667777777778887777765443
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.96 E-value=0.11 Score=45.02 Aligned_cols=120 Identities=9% Similarity=-0.054 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhcc
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL 114 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~ 114 (245)
....+|+..+...+.++.+..+.+.=.+.++.....+.+.+...++-.+|.+++.+...+ ..-|......-.+.+.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 445556666666677877777655433334445566888888888888999988877653 222566666777889999
Q ss_pred CCHHHHHHHHHhcC-CCCcH-HHHHHHHHHHHhCCCCccccccc
Q 043265 115 QKIAEAREFIRNMQ-IDASS-VVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 115 g~~~~a~~~~~~m~-~~~~~-~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++.+.|..+.++.. ..|+. .+|..|..+|...|+++.|....
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999885 56765 69999999999999999987655
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.94 E-value=0.22 Score=35.76 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
..+.+.|++++|.+.|+.....+ ..+...|..+-..+.+.|.++.+....... .+.+...+..+-..+...|+.++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHH
Confidence 44455556666666665554433 123445555555555555555554432221 12234444445555555666666
Q ss_pred HHHHHHHhh
Q 043265 84 GFQHFESVT 92 (245)
Q Consensus 84 a~~~~~~m~ 92 (245)
|...|+...
T Consensus 104 A~~~~~~al 112 (135)
T TIGR02552 104 ALKALDLAI 112 (135)
T ss_pred HHHHHHHHH
Confidence 666665443
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.92 E-value=0.23 Score=34.40 Aligned_cols=25 Identities=4% Similarity=0.081 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI 28 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~ 28 (245)
.....+.+.|++++|.+.|..+.+.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~ 31 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK 31 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777788888877777653
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.85 E-value=0.26 Score=38.42 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=39.8
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHH-HhccCC--HHHHHHHHHhcC-CCCc-HHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDL-YGRLQK--IAEAREFIRNMQ-IDAS-SVVWE 137 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-y~~~g~--~~~a~~~~~~m~-~~~~-~~~~~ 137 (245)
|...|..+-..|...|++++|...|+...+ ..| +...+..+-.+ |...|+ .++|..++++.- ..|+ ...+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 444455555555555555555555554432 223 23334444443 234444 255555554442 2332 23333
Q ss_pred HHHHHHHhCCCCccccccc
Q 043265 138 TLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 138 ~li~~~~~~g~~~~~~~~~ 156 (245)
.+-..+...|+.+.|...+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 149 LLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3334444555555554444
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.84 E-value=0.24 Score=39.38 Aligned_cols=125 Identities=15% Similarity=0.046 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCH-HHHHHHHHHhhhh--------hhHHHHHHHHhcC--CCCcHh-hH--
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIF-LDS-PDIIELLNVCMDL--------KLLEAGKRFENDG--VRPNWS-TF-- 68 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~-p~~-~t~~~ll~~~~~~--------~~~~~~~~~~~~~--~~p~~~-t~-- 68 (245)
.+-..|.+.|++++|...|+++.+..-. |.. .++..+-.++.+. |..+.+.+....- ..|+.. .+
T Consensus 75 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 3456788899999999999999765322 221 1333333333332 5555555442221 123221 11
Q ss_pred ---------------HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 69 ---------------VGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 69 ---------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-.+-..+.+.|+.++|...++...+...-.| ....+..+..+|.+.|+.++|...++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1344567888999999999999876433233 34678899999999999999999998775
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.83 E-value=0.43 Score=39.67 Aligned_cols=118 Identities=8% Similarity=-0.150 Sum_probs=87.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc-HhhHHHHHHHhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPN-WSTFVGVITACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~-~~t~~~ll~~~~~~g~~~ 82 (245)
=..|.+.|++++|...|.+..+..- .+...|+.+-..+...|.++.|....... +.|+ ..+|..+-.++...|+.+
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 3467888999999999999887542 35788999999999999999887764443 4454 677788888888999999
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+|.+.|+...+ ..|+-.........+...++.++|...|.+.
T Consensus 150 eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 150 LAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999988755 3454332233333445677899999999654
No 96
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.82 E-value=0.014 Score=38.66 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
.+-.+|.+.|+.++|..+++.... +.. +....-.+-.+|.+.|++++|.++|+
T Consensus 30 ~la~~~~~~~~y~~A~~~~~~~~~--~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 30 NLAQCYFQQGKYEEAIELLQKLKL--DPS-NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHTTHHHHHHHHHHCHTH--HHC-HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 345555555555555555544111 111 11122233445555555555555544
No 97
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.77 E-value=0.00054 Score=50.40 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=85.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a 84 (245)
+|..+.+.+.++.....++.+...+..-+....+.++..|++.+..+....+.+.. +..-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHH
Confidence 56677777888888888888887776677888899999999887766666665532 224445677777777777777
Q ss_pred HHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 85 FQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
.-++..+... ...+..+.+.++++.|.+.+.+.. |..+|..++..|...++
T Consensus 90 ~~Ly~~~~~~----------~~al~i~~~~~~~~~a~e~~~~~~---~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNH----------DEALEILHKLKDYEEAIEYAKKVD---DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTH----------TTCSSTSSSTHCSCCCTTTGGGCS---SSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccH----------HHHHHHHHHHccHHHHHHHHHhcC---cHHHHHHHHHHHHhcCc
Confidence 7777654321 112223445566666665555554 67899999999877654
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.65 E-value=0.048 Score=35.96 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHHHHHHHhc-CCCCc-HhhHHHHHHHhcccCcHHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIF-LDSPDIIELLNVCMDLKLLEAGKRFEND-GVRPN-WSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~-~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
.|+++.|+.+|+++.+..-. |+...+-.+-.+|.+.|.++.|..+.+. ...|+ ....-.+-.+|.+.|+.++|.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 58899999999999876542 3455566688889999999999887544 23332 233445577888999999999998
Q ss_pred HH
Q 043265 89 ES 90 (245)
Q Consensus 89 ~~ 90 (245)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.1 Score=43.96 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLK 26 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~ 26 (245)
++-.|.+.+++++|..+..++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred heeeecccccHHHHHHHHhhcC
Confidence 3456788899999998887763
No 100
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.28 Score=39.74 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+.+.+|.-+|++|-+ ...|+.-+.+-+..+....|++++|+.+++..
T Consensus 185 ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred cchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 34457777777777743 36666667777777777777777777777655
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.61 E-value=0.095 Score=36.43 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=33.8
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+..+-.++.+.|+++.|...|+.......-.| ....+..+-.+|.+.|+.++|...++..
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 444566666666666666666666544211111 1234455556666666666666666655
No 102
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.58 E-value=0.16 Score=41.52 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCH-HHHHHHH
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKI-AEAREFI 124 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~-~~a~~~~ 124 (245)
+.+++++|+. .|+.||-.+--.||++|++-|.. .+..++.
T Consensus 142 ~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 142 AIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 6788888866 79999998888999999888763 3444433
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.55 E-value=0.62 Score=41.90 Aligned_cols=87 Identities=15% Similarity=0.233 Sum_probs=65.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CC-CcHHHHHHHHHHH
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-ID-ASSVVWETLEKYA 143 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~-~~~~~~~~li~~~ 143 (245)
++.-+-..|-+.|+.++|+++.++..+ ..|+ +..|..--..|-..|++++|.+..+.-+ +. .|-.+=+--..++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 345556778889999999999987765 3566 5677888889999999999999887765 22 3445545555888
Q ss_pred HhCCCCccccccc
Q 043265 144 QTEPGLLLGEPSS 156 (245)
Q Consensus 144 ~~~g~~~~~~~~~ 156 (245)
.+.|+++.|....
T Consensus 273 LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 273 LRAGRIEEAEKTA 285 (517)
T ss_pred HHCCCHHHHHHHH
Confidence 8889988887755
No 104
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=0.22 Score=43.57 Aligned_cols=140 Identities=14% Similarity=0.250 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCC--Cc-HhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 13 REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR--PN-WSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
+++..|..+|+....-. ..+...|--.+..=.++..+..|+.+..+.+. |- -.-|---+..=-..|++..|.++|+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677888888876644 34556666666666666666666665443321 21 1122222233334566666777766
Q ss_pred HhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 90 SVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 90 ~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.- ..++|+...|.+.|+.=.+-..++.|..++++.. ++|++.+|---...=-++|++..+..+.
T Consensus 166 rW---~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 166 RW---MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HH---HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44 3466777777777776666666666777776664 4666666655555555666655555444
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.45 E-value=0.079 Score=48.66 Aligned_cols=107 Identities=10% Similarity=0.166 Sum_probs=81.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC--cHhhHHHHHHHhcccC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP--NWSTFVGVITACGCFG 79 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p--~~~t~~~ll~~~~~~g 79 (245)
|.-+-..|+..|+++.|+++|.+- -.++--|..|++.|.|+.+-++......| ....|.+-..-.-..|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 344567899999999999999874 23677789999999999998876554444 4566777677778889
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+.+|++++-.+. +|+ -.|.+|-++|..++..++.++-
T Consensus 839 kf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred chhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 9999998885442 355 3578888999888888887755
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.26 E-value=0.4 Score=47.10 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=100.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-c-HhhHHHHHHHhccc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNI-GIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRP-N-WSTFVGVITACGCF 78 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~-g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p-~-~~t~~~ll~~~~~~ 78 (245)
-|....+.++.++|.+++++.... +++-. ...|.++++.--..|.-+...++.++-++- | ...|..|...|.+.
T Consensus 1464 YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1464 YMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 355666778999999999997643 33211 244666665554445444444443333322 2 46789999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-CCCC---cHHHHHHHHHHHHhCCCCccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-QIDA---SSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~---~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
+..++|-++++.|.++++ -....|....+.+.+...-+.|..++.+- ..-| .+....-....-.++|+.++|+.
T Consensus 1544 ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred hcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 999999999999988766 45668899999999999888898888654 2222 23333334444456788788777
Q ss_pred cc
Q 043265 155 SS 156 (245)
Q Consensus 155 ~~ 156 (245)
++
T Consensus 1622 lf 1623 (1710)
T KOG1070|consen 1622 LF 1623 (1710)
T ss_pred HH
Confidence 66
No 107
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.94 E-value=0.3 Score=40.00 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh--------------------hhHHHHHHHHhcCCCCcHhhHHHHH
Q 043265 13 REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL--------------------KLLEAGKRFENDGVRPNWSTFVGVI 72 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~--------------------~~~~~~~~~~~~~~~p~~~t~~~ll 72 (245)
+.++=...-+..|++.|++-|..+|+.||+.+-+. ..++..++|...|+.||..+-..||
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 45555556677899999999999999999988664 2556667889999999999999999
Q ss_pred HHhcccCc-HHHHHHHHHHhhh
Q 043265 73 TACGCFGA-VDEGFQHFESVTR 93 (245)
Q Consensus 73 ~~~~~~g~-~~~a~~~~~~m~~ 93 (245)
.++++.+- ..+..++.-.|.+
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhccccccHHHHHHHHHhhhh
Confidence 99999886 4445555555655
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.83 E-value=0.24 Score=30.84 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=32.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG 60 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 60 (245)
.+.|++++|+++|.++....-. +...+-.+..+|.+.|.++.|.++.+.-
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888887665321 4555556666677777777776665543
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.73 E-value=0.78 Score=38.79 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDS-PDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQH 87 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 87 (245)
.+..+.+.+.+.. .....|+. .....+-..+...|.++.+.+..+.. ..| +...+..+-..+...|++++|...
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555544 22223443 33444455667778888887764442 234 456678888889999999999999
Q ss_pred HHHhhhhcCCCcch--HHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 88 FESVTRDYDINPTL--EHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 88 ~~~m~~~~~~~p~~--~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
++.........|+. ..|-.+...+...|+.++|..+++...
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99876532222343 345578899999999999999999863
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.3 Score=40.66 Aligned_cols=150 Identities=9% Similarity=0.116 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHhhhhhhHHHHHHHHhcCC-CCcHh------hHHHHHHHhcccCcH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDII---ELLNVCMDLKLLEAGKRFENDGV-RPNWS------TFVGVITACGCFGAV 81 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~~~~~~~~~~-~p~~~------t~~~ll~~~~~~g~~ 81 (245)
++..++|.++|-+|.+. |+.||- +|=+.|-+-|-+|.|.++...=+ .||.. .---|-.-|-..|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46789999999999874 333333 34455666789999988754432 33321 123345667789999
Q ss_pred HHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHH-HHHHh-------CCCCcccc
Q 043265 82 DEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLE-KYAQT-------EPGLLLGE 153 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li-~~~~~-------~g~~~~~~ 153 (245)
|.|+++|..+..+..+.+. ..-.|+..|-....|++|.++-.+.. +.+.-+|+.-| ..||. ..+++.|.
T Consensus 124 DRAE~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999988764334443 45679999999999999999888765 32333444444 33333 34555544
Q ss_pred ccc--ccccccccccCC
Q 043265 154 PSS--SLRLSNKKKDAG 168 (245)
Q Consensus 154 ~~~--~~~~~~~~~~~g 168 (245)
... +++..|...+.+
T Consensus 201 ~~l~kAlqa~~~cvRAs 217 (389)
T COG2956 201 ELLKKALQADKKCVRAS 217 (389)
T ss_pred HHHHHHHhhCccceehh
Confidence 444 555544443333
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.72 E-value=0.93 Score=33.19 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=64.3
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch--HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHH-HH
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL--EHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLE-KY 142 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li-~~ 142 (245)
...-.+-..+...|++++|...|+....+ .-.|+. ...--|...+...|++++|...++...-.+-...+..+. ..
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 33444557888899999999999999874 322322 234457889999999999999998875333344455555 88
Q ss_pred HHhCCCCcccccc
Q 043265 143 AQTEPGLLLGEPS 155 (245)
Q Consensus 143 ~~~~g~~~~~~~~ 155 (245)
+...|+.+.|...
T Consensus 128 ~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 128 YLAQGDYDEARAA 140 (145)
T ss_pred HHHCCCHHHHHHH
Confidence 8889998887654
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.71 E-value=0.89 Score=44.89 Aligned_cols=150 Identities=6% Similarity=-0.013 Sum_probs=105.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~ 78 (245)
|-++++.-.--|.-+...++|++..+.- -....|..|..-|.+.+..++|.++.+. .+.-....|...+..+.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 5667777777777778888888876642 1245677888888888777776554222 3335567788888888888
Q ss_pred CcHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCcccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~ 153 (245)
.+-+.|..++.+..+ +.|. +....-....-.++|+.+.++.+|+..- .+...-.|+..|..-.++|+.+.++
T Consensus 1578 ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 888888888876643 4554 3334555667778888888888888774 2334568888888888888887766
Q ss_pred ccc
Q 043265 154 PSS 156 (245)
Q Consensus 154 ~~~ 156 (245)
.++
T Consensus 1655 ~lf 1657 (1710)
T KOG1070|consen 1655 DLF 1657 (1710)
T ss_pred HHH
Confidence 655
No 113
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.67 E-value=2 Score=38.75 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=40.3
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-CCCCcHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-QIDASSVV 135 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~~~~~ 135 (245)
+...|.++--.....|++++|...+++... ..|+...|..+-..|...|+.++|...+++- .+.|...|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 345555554444455677777777766644 3356666666667777777777776666543 23444333
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.60 E-value=0.96 Score=34.16 Aligned_cols=110 Identities=8% Similarity=0.045 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCC--CCc----HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDGV--RPN----WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGI 107 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 107 (245)
..+..+-..+...|.++.|....+..+ .|+ ...+..+-..+.+.|+.++|...+.+... ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 445666666666677777655433322 122 35677777888888888888888887754 334 34556666
Q ss_pred HHHHhccCC--------------HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 108 VDLYGRLQK--------------IAEAREFIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 108 i~~y~~~g~--------------~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
-.+|...|+ +++|.+++++.. ..++.-|..++..+...|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHHHHHhcCc
Confidence 777777776 578899988775 3333335566666665554
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.55 E-value=2.2 Score=39.91 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhcccCcH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGCFGAV 81 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~~g~~ 81 (245)
-....+.|.+++|+.+++...+. .|| ......+...+.+.+.+++|....++ -..|+ ......+-.++.+.|+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 34556789999999999998764 565 56677778888888888888665433 34454 55667777888899999
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
++|..+|++.... .|+ ..++..+-.++-+.|+.++|...|+.-
T Consensus 171 ~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 171 EQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998752 233 567888888899999999999988766
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.45 E-value=0.28 Score=38.25 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHH-hcccCc--HHHHHHHHH
Q 043265 16 KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITA-CGCFGA--VDEGFQHFE 89 (245)
Q Consensus 16 ~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~-~~~~g~--~~~a~~~~~ 89 (245)
+++...+....+.+ ..|...|..+-..|...|.++.|....+. ...| |...+..+-.+ +...|+ .++|.++++
T Consensus 56 ~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 56 EAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 44444444443332 34678888888889899999988776444 3445 56667777666 467776 599999999
Q ss_pred HhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHH
Q 043265 90 SVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYA 143 (245)
Q Consensus 90 ~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~ 143 (245)
+..+ ..| +...+..+-..+.+.|++++|...|+++- ..|+..- ..+|..-
T Consensus 135 ~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r-~~~i~~i 187 (198)
T PRK10370 135 KALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR-TQLVESI 187 (198)
T ss_pred HHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH-HHHHHHH
Confidence 8865 344 56788889999999999999999999984 3555544 3444543
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.39 E-value=0.12 Score=48.05 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH-------------HhcCCCCc-HhhHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF-------------ENDGVRPN-WSTFVGVIT 73 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~-------------~~~~~~p~-~~t~~~ll~ 73 (245)
.|+.-|+.+.|.+-++.+++. ..|..+.+.|.+...++.|+-. .+..-.|+ ...=.++|
T Consensus 737 fyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL- 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL- 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH-
Confidence 355678999998888888765 6799999999988666655432 22222332 22222333
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-...|.+++|+.++.+-++ |-.|=..|-..|++++|.++-+.-
T Consensus 810 -AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 810 -AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred -HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhc
Confidence 3467899999999987755 345566777788899888877543
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.61 Score=37.84 Aligned_cols=131 Identities=8% Similarity=-0.030 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 043265 20 EVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP 99 (245)
Q Consensus 20 ~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 99 (245)
++.+.+.......+...-..-...|.+.|++++|.+....+-..... ..=+....+...++.|++-++.|.. +.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~---id- 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQ---ID- 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc---cc-
Confidence 34444544444444333333334577889999998877764433333 3334446688899999999999965 22
Q ss_pred chHHHHHH----HHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 100 TLEHFLGI----VDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 100 ~~~~~~~l----i~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+-.|.+.| |....-.+.+.+|.-+|++|. ..|...+-|-+..++-..|+++.|+.+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 33455544 444455667899999999996 5788888888888888999999988766
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.23 E-value=1.2 Score=41.75 Aligned_cols=125 Identities=6% Similarity=-0.025 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch-HHH
Q 043265 29 GIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL-EHF 104 (245)
Q Consensus 29 g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 104 (245)
....++..+-.|-..-.+.|..+++....+. .+.|| ......+...+.+.+.+++|....++... ..|+. ..+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHH
Confidence 3444567777777777788999999887554 56675 66778889999999999999999998854 45654 556
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCccccccc
Q 043265 105 LGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 105 ~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
..+-.++.+.|+.++|..+|++.- ..|| ...|.+.=.++...|+.+.|...+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788889999999999999999885 3444 567777777788888888877666
No 120
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.22 E-value=0.72 Score=40.30 Aligned_cols=142 Identities=10% Similarity=0.084 Sum_probs=81.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CCcHhhH-HHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIG-IFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RPNWSTF-VGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~~~t~-~~ll~~~~~ 77 (245)
|...|++-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+...|-.+.+.|. .||...| .--+.-+.+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4455666666666777777777777777 45777777777776655 34444444444443 3555444 334455556
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhC
Q 043265 78 FGAVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTE 146 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~ 146 (245)
.++=+.|..+|+.-.++ ++-+ ...|-.||+-=++-|++..+..+=+.|. .-|-..+-..+.+-|...
T Consensus 479 inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 479 INDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred hCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 67777777777643321 2223 4557777777777777776666555554 223333334444444443
No 121
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.17 E-value=0.18 Score=32.48 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=48.1
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhh---cCC-Ccc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRD---YDI-NPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+|+.+-..|...|++++|...|++...- .|- .|+ ..++..|-.+|.+.|+.++|.+.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456888888999999999999999877531 221 233 677888999999999999999988753
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.01 E-value=0.72 Score=39.47 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=61.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~ 83 (245)
..+...|++++|+++|.+..+.+- -+...|..+-.+|.+.|.++.|....... +.| +...|..+-.+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 456678899999999999887542 24566777777777777777776653332 333 45667777778888888888
Q ss_pred HHHHHHHhhh
Q 043265 84 GFQHFESVTR 93 (245)
Q Consensus 84 a~~~~~~m~~ 93 (245)
|...|+...+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.96 E-value=1.2 Score=33.51 Aligned_cols=107 Identities=4% Similarity=-0.073 Sum_probs=62.8
Q ss_pred HHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc----HhhHHHHHHHhcccCcHHHHHHHH
Q 043265 16 KAALEVMDKLK-NIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPN----WSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 16 ~~A~~lf~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~----~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
..+...+..+. ..+..--...|..+...+...|.++.|....... +.|+ ..++..+-..+.+.|+.++|.+.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444442 2222222455566666666667777765543322 2222 346777878888889999999988
Q ss_pred HHhhhhcCCCcc-hHHHHHHHHHHh-------ccCCHHHHHHHHH
Q 043265 89 ESVTRDYDINPT-LEHFLGIVDLYG-------RLQKIAEAREFIR 125 (245)
Q Consensus 89 ~~m~~~~~~~p~-~~~~~~li~~y~-------~~g~~~~a~~~~~ 125 (245)
+.... +.|+ ..++..+...|. +.|++++|...++
T Consensus 96 ~~Al~---~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 96 FQALE---RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHH---hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 87754 2332 455666666676 7788775555443
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.1 Score=37.08 Aligned_cols=143 Identities=10% Similarity=-0.000 Sum_probs=90.1
Q ss_pred HHcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhh---hhHHHHHHHHhcCCC-------------CcH-------
Q 043265 10 CREREVKAALEVMDKLKN-IGIFLDSPDIIELLNVCMDL---KLLEAGKRFENDGVR-------------PNW------- 65 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~-~g~~p~~~t~~~ll~~~~~~---~~~~~~~~~~~~~~~-------------p~~------- 65 (245)
-|.|.++.|.+-|+...+ .|..| ...||.-+..|.+. .+++...++.++|++ ||.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 477999999999999875 45554 46899999888664 244444445444443 221
Q ss_pred -hhHHHHHHH-------hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHH--HHHHhccCCHHHHHHHHHhcCCCCcHHH
Q 043265 66 -STFVGVITA-------CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGI--VDLYGRLQKIAEAREFIRNMQIDASSVV 135 (245)
Q Consensus 66 -~t~~~ll~~-------~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l--i~~y~~~g~~~~a~~~~~~m~~~~~~~~ 135 (245)
..-++++.+ +-+.|+.+.|.+-+-.|+.+..-..|.+|...+ .++=++-+.--.-+.++-... +--..|
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-CCChHH
Confidence 122444444 467899999999999998766667788876644 444443333333333333432 223468
Q ss_pred HHHHHHHHHhCCCCccccc
Q 043265 136 WETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 136 ~~~li~~~~~~g~~~~~~~ 154 (245)
|..++-.||++...+.|..
T Consensus 313 FANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred HHHHHHHHhhhHHHhHHHH
Confidence 8888888888776666544
No 125
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.79 E-value=0.37 Score=35.29 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=43.0
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
....++..+...|+.+.|.++...... +.| |...|-.+|.+|.+.|+..+|.++|+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 445566677788899999998888765 334 5678888999999999999998888765
No 126
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.72 E-value=1.1 Score=37.54 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=77.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHH----HHHHhcCCCCcH----hhHHHHHHHhccc
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG----KRFENDGVRPNW----STFVGVITACGCF 78 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~p~~----~t~~~ll~~~~~~ 78 (245)
.-|...|-++.|+.+|..+.+.|.. -.....-|+.-|-+...|+.| +++.+.+-++.. +.|.=+-..+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 4577788888888888888775542 234566777777766555444 334333322221 2233444444445
Q ss_pred CcHHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHhCCCCccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS--SVVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~--~~~~~~li~~~~~~g~~~~~ 152 (245)
.+++.|..++....+ ..|+. ..-..+=+.+...|+.+.|.+.++... -.|+ ..+-..|..+|...|+.+.+
T Consensus 194 ~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 194 SDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 566666666665433 22322 222234456666666666666666664 1233 23445555666666665543
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.69 E-value=1.6 Score=38.93 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhHHHHHHH----HhcCCCC-cHhhHHHHHHHhcccCcHHHHHHHH
Q 043265 15 VKAALEVMDKLKNI-GIFLDSPDIIELLNVCMDLKLLEAGKRF----ENDGVRP-NWSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 15 ~~~A~~lf~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~~----~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
.+...+.+++++.. .+.|+ .+|..+|+.--+...++.|+.+ .+.+..+ ++..++++|.-||. ++-+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44555556665533 33344 3567777777666666665543 4445555 67777777777664 4555677777
Q ss_pred HHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCc--HHHHHHHHHHHHhCCCCccccccc
Q 043265 89 ESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDAS--SVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 89 ~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~--~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+.=.+.+|-.| .--...++-+...++-..++.+|++.. +.|| ..+|..||..=...|++..+..+.
T Consensus 425 eLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 425 ELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 64333233222 223466777777777777777777663 1222 467888887777777777665555
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.65 E-value=1.8 Score=30.79 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=32.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhhhhhHHHHHHHHhc
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLD--SPDIIELLNVCMDLKLLEAGKRFEND 59 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~ 59 (245)
++-..|+.++|+.+|.+....|...+ ...+-.+-.++...|.++++..+.+.
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567888888888888888877543 22333444445555666666555433
No 129
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=1.3 Score=38.75 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGC 77 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~ 77 (245)
|+..+=+.|.-.+.-++|...|++..+-+-. ....|+.+=.-|....+...|.+--+.- .+.|-..|=.|=.+|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 3445556778888999999999998875532 3455666655566665555544433332 34466777778888999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhCCCCccccc
Q 043265 78 FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQI--DASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
.+...-|+-.|++.. .+.| |...|.+|=++|.+.+++++|.+.|.+--. +.+...+..|-.+|.+-++.+.|..
T Consensus 411 m~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 411 MKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999998764 4666 789999999999999999999999987742 3444778888888888888777665
Q ss_pred cc
Q 043265 155 SS 156 (245)
Q Consensus 155 ~~ 156 (245)
..
T Consensus 488 ~y 489 (559)
T KOG1155|consen 488 YY 489 (559)
T ss_pred HH
Confidence 44
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.56 E-value=0.22 Score=30.80 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
-..+.+.|++++|.+.|++..+. .| +...+..+-.++.+.|++++|...|+... ..|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34577889999999999999763 25 56778888999999999999999998773 3444
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.51 E-value=0.67 Score=42.59 Aligned_cols=53 Identities=15% Similarity=-0.063 Sum_probs=40.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
|.-.|.+|+..|.-++|..+..+..+ -.||+..|..+-+..-....++.+.++
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHH
Confidence 45678899999999999888887766 468888999888877666555555443
No 132
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.36 E-value=0.53 Score=34.43 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCC---CCcHhhHHHHHHHhcccCcHHHHHHHHHHhh----hhcCCCcchHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDGV---RPNWSTFVGVITACGCFGAVDEGFQHFESVT----RDYDINPTLEHF 104 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 104 (245)
.....++..+...|.++.+.+.....+ +.|...|-.+|.+|...|+...|.++|+.+. ++.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 355666666677787887776644432 3367788888889999998888888887663 347888887654
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.15 E-value=2.9 Score=31.54 Aligned_cols=83 Identities=8% Similarity=0.097 Sum_probs=50.2
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-c-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-T-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLE 140 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li 140 (245)
...|..+-..+...|++++|...|++.... .-.+ + ...+..+-.+|.+.|+.++|...+.+.- ..|+ ...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344666666677778888888888776541 2111 1 3466777778888888888888776553 3443 33343333
Q ss_pred HHHHhCCC
Q 043265 141 KYAQTEPG 148 (245)
Q Consensus 141 ~~~~~~g~ 148 (245)
..+...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 45555444
No 134
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.04 E-value=3.2 Score=37.98 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL 47 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~ 47 (245)
|++|-+.|.+.|.+++|..+|.+-...- ..+--|+.+.++|++-
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHH
Confidence 7899999999999999999999976652 3556678888888764
No 135
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=1.8 Score=39.01 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=83.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHH--HHHHhc--ccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVG--VITACG--CFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~--ll~~~~--~~g~ 80 (245)
=|+-+.+.|++++|.+.-.++...+ +-|...+-+=+-+..+.+.+++|..+.+..-. ..+++. +=.+|| +.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 3567788899999999999998876 44566777777788888999999877554322 122222 356665 4778
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.|+|...++..... |..+...=-..+-+.|++++|.++++.+
T Consensus 95 ~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 95 LDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999888744332 3445566667788899999999999877
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.93 E-value=2.7 Score=37.01 Aligned_cols=106 Identities=9% Similarity=-0.024 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHH
Q 043265 46 DLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 46 ~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~ 121 (245)
..|.++.++..... .-.| |..-.......+.+.++..+|.+.++.+.. ..|+ ....-.+-.+|.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHH
Confidence 44555555443221 2233 344445555666777777777777776643 3455 344455667777777777777
Q ss_pred HHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccc
Q 043265 122 EFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 122 ~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
+++++-. .+-|+..|..|-.+|...|+...+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 7776654 24456777777777777777665443
No 137
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=3.2 Score=37.28 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHh-------c-C--CCCcHhhHHHHHHHhcc
Q 043265 9 LCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFEN-------D-G--VRPNWSTFVGVITACGC 77 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~-------~-~--~~p~~~t~~~ll~~~~~ 77 (245)
|.+-++++-|.+.|.+... +-| |+...+-+=-.....+.+..|....+ . + ...=..+++.|=.+|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 5566788888888877654 444 45555544444444454554433211 1 1 11234567888888999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Q 043265 78 FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQT 145 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~ 145 (245)
.+..++|...|+.... -..-|..+|+++--.|...|+++.|.+.|.+-- +.||..+-+.|++-+..
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999987754 123377888999999999999999999987664 78988888888865543
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=92.78 E-value=1.1 Score=41.36 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=112.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCcHhhHHHHHHHhcccCcHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
+-..+...|....|..+|+++ ..|..+|..|...|.-..|..+..+. -+||..-|.++-+.....--++
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 345678889999999999987 56888999999999777777764443 4688899999988888888888
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-CCCC-cHHHHHHHHHHHHhCCCCccccccc--cc
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-QIDA-SSVVWETLEKYAQTEPGLLLGEPSS--SL 158 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~-~~~~~~~li~~~~~~g~~~~~~~~~--~~ 158 (245)
+|.++++..-.+ ..-.+-...-++++++++.+-|+.- .+.| -..+|=..=.+.-+.+++..+...+ ..
T Consensus 475 kawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 999888866432 0011111111256677777666532 2222 1233333323333334444433333 22
Q ss_pred ccccccccCCcccccccccccCchhhhhcccccch-HHHHHHHHhhcCCCCCeEEeecccc----ccCchhhHHHHhhhh
Q 043265 159 RLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRS-ERLAVAYGLISTPPGRTLRIKKNLR----ICGECHNFIKKLSSI 233 (245)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~a~~l~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~ 233 (245)
. ..|+...-...+..........-++ ..+.+| +... .....+|.||. +.|..++|++..+++
T Consensus 547 t---------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA--lKcn--~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 T---------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA--LKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred h---------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH--hhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 2 2233333333333222211111111 111222 1111 22234666665 558888888888877
Q ss_pred cCce
Q 043265 234 ENRE 237 (245)
Q Consensus 234 ~~~~ 237 (245)
..-.
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 6533
No 139
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=4.8 Score=32.90 Aligned_cols=133 Identities=12% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHH----HHhcCCCCcHhhHHHHH-----HH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR----FENDGVRPNWSTFVGVI-----TA 74 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----~~~~~~~p~~~t~~~ll-----~~ 74 (245)
+++..+.-.|.+.-....+.+..+++-+-+++....|.+.-.+.|+.+.++. +.+..-+.|..+++.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 4445555556666666667776666555566666666666666676666543 23343444444444433 23
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHH--HHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHH
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFL--GIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLE 140 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li 140 (245)
|....++..|...|.++...-. .|+..-| +|+.+|. |+..+|.+..+.|. .-|...+-++++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYl--g~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYL--GKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred eecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHH--HHHHHHHHHHHHHhccCCccchhhhHH
Confidence 4445566666666666644211 1222222 4555554 67778888777775 345555555444
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.66 E-value=0.83 Score=28.42 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=47.0
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccC-CHHHHHHHHHhc
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQ-KIAEAREFIRNM 127 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g-~~~~a~~~~~~m 127 (245)
+..+|..+=..+...|++++|...|.+..+- .| +...|..+-.+|.+.| +.++|.+.|+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4566777778888899999999999887652 34 4567778888888888 688888887653
No 141
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.51 E-value=2.6 Score=35.54 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=50.7
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYA 143 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~ 143 (245)
...+.+..|.-|...|+...|.++-. ++++ ||-.-|-..|.+|++.|+|++-+++... +..++-|-.++.+|
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC 247 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH
Confidence 34455556666666777666665543 3444 5666677777777777777777765543 22446677777777
Q ss_pred HhCCCCccc
Q 043265 144 QTEPGLLLG 152 (245)
Q Consensus 144 ~~~g~~~~~ 152 (245)
...|+...|
T Consensus 248 ~~~~~~~eA 256 (319)
T PF04840_consen 248 LKYGNKKEA 256 (319)
T ss_pred HHCCCHHHH
Confidence 777765553
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.48 E-value=1.5 Score=36.22 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=46.6
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc-CCCCcHHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM-QIDASSVVWETLEK 141 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~~~~~~~~li~ 141 (245)
|.+-|..=-.+|++.|..+.|.+-.+.-. .+-|. ..+|..|=.+|...|++++|.+.|++- .+.|+-.+|-+=|.
T Consensus 114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 114 NAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 45556666666666666666665554332 23332 456667777777777777777776654 36666666666664
Q ss_pred HH
Q 043265 142 YA 143 (245)
Q Consensus 142 ~~ 143 (245)
..
T Consensus 191 ~A 192 (304)
T KOG0553|consen 191 IA 192 (304)
T ss_pred HH
Confidence 44
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.28 E-value=0.87 Score=41.89 Aligned_cols=180 Identities=10% Similarity=0.044 Sum_probs=93.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC------------------CCCcHhhHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG------------------VRPNWSTFVGVIT 73 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~------------------~~p~~~t~~~ll~ 73 (245)
-|.+++|+++|-+|-++++. |..+-+.|++-...++.+.| ...+...|-...+
T Consensus 747 ~g~feeaek~yld~drrDLA---------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA---------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh---------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999888776542 22222233333333322221 1123444555556
Q ss_pred HhcccCcHHHHHHH------HHHhhhh-cCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Q 043265 74 ACGCFGAVDEGFQH------FESVTRD-YDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTE 146 (245)
Q Consensus 74 ~~~~~g~~~~a~~~------~~~m~~~-~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~ 146 (245)
.|..+|+.+.-.+. |++++.= ....-|......|-+++.+.|+.++|..-|-+.. .|.. -+..|...
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pka-----Av~tCv~L 891 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPKA-----AVHTCVEL 891 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcHH-----HHHHHHHH
Confidence 66666655443222 2222110 0112255666788999999999999999888877 5543 23445444
Q ss_pred CCCccccccc-ccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCCeEEeeccccccCchhh
Q 043265 147 PGLLLGEPSS-SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGRTLRIKKNLRICGECHN 225 (245)
Q Consensus 147 g~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~~~l~~~~~~~g~~~~ 225 (245)
..+..|..+. -+ -.|...+++. ..|..++.+-. ..--+..++++|..-+
T Consensus 892 nQW~~avelaq~~----------~l~qv~tlia------------------k~aaqll~~~~--~~eaIe~~Rka~~~~d 941 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF----------QLPQVQTLIA------------------KQAAQLLADAN--HMEAIEKDRKAGRHLD 941 (1189)
T ss_pred HHHHHHHHHHHhc----------cchhHHHHHH------------------HHHHHHHhhcc--hHHHHHHhhhcccchh
Confidence 4444432221 11 1133332211 11111221111 0113567888888888
Q ss_pred HHHHhhhhcCc
Q 043265 226 FIKKLSSIENR 236 (245)
Q Consensus 226 a~~~~~~~~~~ 236 (245)
|.+++++|.+|
T Consensus 942 aarll~qmae~ 952 (1189)
T KOG2041|consen 942 AARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHhHH
Confidence 88888888775
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.22 E-value=2.2 Score=31.96 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=35.3
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc--chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP--TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...|..+...+...|++++|...|..... ..-.| ...+|..+-.+|.+.|+.++|...++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555566777777776665543 11111 1235666666667777777777766554
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.15 E-value=1.3 Score=37.86 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=69.9
Q ss_pred hhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHH
Q 043265 46 DLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~ 121 (245)
..|.++.|.+..... ..| +...|..+-.+|.+.|++++|...++.... +.| +...|..+-.+|...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 445666665543332 233 567788888899999999999999998865 445 4567888889999999999999
Q ss_pred HHHHhcC-CCCcHHHHHHHHHHH
Q 043265 122 EFIRNMQ-IDASSVVWETLEKYA 143 (245)
Q Consensus 122 ~~~~~m~-~~~~~~~~~~li~~~ 143 (245)
..|+... +.|+.......+..|
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 9998764 567665555556554
No 146
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.09 E-value=6.6 Score=36.22 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~ 78 (245)
|+.--..|.+.+.++-|..+|....+- ..-+...|.-....=-.+|..+....+.+. .++-...-|--..+-+-..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 444445566666666666666655432 112233343333322222333322222111 1222223333333333344
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++..|..++.+.-+ ..| +...|-.-+..-+.+..++.|+++|.+-. ..|...+|.--+..-...++++.|.++
T Consensus 598 gdv~~ar~il~~af~---~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 598 GDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred CCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 455455444444422 122 22344444444455555555555554443 233334443333333334444444433
No 147
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.95 Score=42.92 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=99.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhh------------hhHHHHHHHHh---cCCCCcHhhHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNI-GIFLDSPDIIELLNVCMDL------------KLLEAGKRFEN---DGVRPNWSTFVGV 71 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~-g~~p~~~t~~~ll~~~~~~------------~~~~~~~~~~~---~~~~p~~~t~~~l 71 (245)
.+.+...+..|.+-|....+. ...+|..+.-+|=+.|.+. +..+.|.++-. ..-+-|...=|-+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGI 652 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGI 652 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccch
Confidence 444555555666655554332 2235555555554544332 23333444422 1223355555666
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCC
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ----IDASSVVWETLEKYAQTEP 147 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~~~~~~~~~~li~~~~~~g 147 (245)
=-.++..|++.+|..||.++++. .- -..-+|--+-.+|...|++..|.++|+..- .+-++.+.+.|-.++-..|
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 66778899999999999999874 22 123467889999999999999999998662 2456777778888888888
Q ss_pred CCccccccc--cccccccc
Q 043265 148 GLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 148 ~~~~~~~~~--~~~~~~~~ 164 (245)
.+..++... ++.+.|..
T Consensus 731 ~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred hHHHHHHHHHHHHHhCCcc
Confidence 888777666 55555544
No 148
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.58 E-value=3.9 Score=36.88 Aligned_cols=152 Identities=10% Similarity=0.013 Sum_probs=101.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----C----------CCCCHHHH--HHHHHHhhhhhhHHHHHHHHhcCC--CC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----G----------IFLDSPDI--IELLNVCMDLKLLEAGKRFENDGV--RP 63 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g----------~~p~~~t~--~~ll~~~~~~~~~~~~~~~~~~~~--~p 63 (245)
|+.+-.-|......+-..+++...... | -.|+...| .-+-..|-+.|+.+.|.+....++ .|
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP 225 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP 225 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 444445555445555556666665322 1 12444445 444556778899999988877654 45
Q ss_pred c-HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCc------H---
Q 043265 64 N-WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDAS------S--- 133 (245)
Q Consensus 64 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~------~--- 133 (245)
+ +.-|..--..+.+.|++++|.+..+..+. .-. -|-+.=+-.+.-+.++|++++|.+++.... .++ .
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~~L~~m 302 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARE-LDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLSNLNDM 302 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-CCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCcccCHHHH
Confidence 4 56788888999999999999999987754 222 366777788999999999999999887775 222 1
Q ss_pred -HHHHHH--HHHHHhCCCCccccccc
Q 043265 134 -VVWETL--EKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 134 -~~~~~l--i~~~~~~g~~~~~~~~~ 156 (245)
..|=-+ =.+|.+.|+...|..-+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 122111 26777888887776655
No 149
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.43 E-value=3 Score=36.70 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=49.4
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH-HHHHHHHHHHHhCCCCcc
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS-VVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~-~~~~~li~~~~~~g~~~~ 151 (245)
+-..|+.++|+..+..+..+ .|| ..-+....+.+.+.++.++|.+.|+++. ..|+. ..+-.+=.++...|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34567777777777776543 444 3444566777777777777777777764 45663 333333367777777666
Q ss_pred ccccc
Q 043265 152 GEPSS 156 (245)
Q Consensus 152 ~~~~~ 156 (245)
+....
T Consensus 393 ai~~L 397 (484)
T COG4783 393 AIRIL 397 (484)
T ss_pred HHHHH
Confidence 55544
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.27 E-value=0.93 Score=42.99 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=92.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhcccCcHHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
.+..++|+++|.+..+..- -|...=|.+=-.++..|.+..|..+... ...-+..+|..+-.+|...|++..|.++|
T Consensus 625 kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 3567899999998877642 2445556666666677767766554322 22345678889999999999999999999
Q ss_pred HHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-CCCCc--HHHHHHHH
Q 043265 89 ESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-QIDAS--SVVWETLE 140 (245)
Q Consensus 89 ~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~~--~~~~~~li 140 (245)
+...+++.-.-+..+.+.|-.++-++|.+.+|.+....- ...|. .+.||..+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 988776665667888899999999999999998866443 33333 45566555
No 151
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.00 E-value=6.6 Score=34.81 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=73.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
=.++..+..|..||+.....=-..|. .|--.+..=-..|++..++++... .+.|+...|.+.|+-=.+...++.|..
T Consensus 117 Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 34566677777777776543211122 222222222333667777776553 677888888888888888888888888
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+++...- +.|++.+|--...-=-++|.+..|..+|+.-
T Consensus 196 IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 196 IYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 8876643 4577777777777777778777777777544
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=4.6 Score=39.10 Aligned_cols=76 Identities=20% Similarity=0.067 Sum_probs=35.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHH---HHHhcCC-CCcHhhHHHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGK---RFENDGV-RPNWSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~---~~~~~~~-~p~~~t~~~ll~~~~~ 77 (245)
|..+-.|=.+.|.+.+|++-|-+. -|+..|..+++.+.+.|.+++.. +|.+... .|.. =+.||-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 334444445555555555444332 23455666666666655555432 2322222 2222 2355555555
Q ss_pred cCcHHHHH
Q 043265 78 FGAVDEGF 85 (245)
Q Consensus 78 ~g~~~~a~ 85 (245)
.+++.+-+
T Consensus 1179 t~rl~elE 1186 (1666)
T KOG0985|consen 1179 TNRLTELE 1186 (1666)
T ss_pred hchHHHHH
Confidence 55554433
No 153
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.74 E-value=2.7 Score=35.35 Aligned_cols=152 Identities=13% Similarity=-0.009 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDI-IELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACG 76 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~ 76 (245)
||-.|-+.|.+-.....|+.+|.+-.+. .|-.+|| ..+.+.+-..+..+.+.++-+. --+.|+.....+-..|.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 4556778999999999999999886653 4555554 4455566666777777665332 22335667777888888
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcH--HHHHHHHHHHHhCCCCcc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASS--VVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~--~~~~~li~~~~~~g~~~~ 151 (245)
-.++.+-|++++..+.+ .|+. +...|+.+=-++.-.+++|.++--|++-. -+|+. -+|-.+=......||...
T Consensus 336 Y~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred cCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 89999999999999987 7887 55566666666666788888888776543 13442 234333333334466666
Q ss_pred ccccc
Q 043265 152 GEPSS 156 (245)
Q Consensus 152 ~~~~~ 156 (245)
|++.+
T Consensus 414 A~rcf 418 (478)
T KOG1129|consen 414 AKRCF 418 (478)
T ss_pred HHHHH
Confidence 65555
No 154
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.70 E-value=3.9 Score=38.62 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCc-HhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPN-WSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~-~~t~~~ll~~~~~~g~ 80 (245)
-+-.+|...|+++.|+.+|..+.+.-.--+.+.|--+-..|-..|..++|.+.-..- ..|+ .-.-.+|-+-+-+.|+
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 356788889999999999999887655455678888888888888888887764432 3332 3333455566778899
Q ss_pred HHHHHHHHHHhhh-------hcCCCcchHHHHHHHHHHhccCCHHHHHH
Q 043265 81 VDEGFQHFESVTR-------DYDINPTLEHFLGIVDLYGRLQKIAEARE 122 (245)
Q Consensus 81 ~~~a~~~~~~m~~-------~~~~~p~~~~~~~li~~y~~~g~~~~a~~ 122 (245)
.|+|.+.++.|.. ..++.|+...---..+.|.+.|+.++=..
T Consensus 499 ~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 499 HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999998887422 13556666666667788888888777443
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.44 E-value=6.3 Score=35.66 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=88.2
Q ss_pred cCCCCCHHHHHHHHHHhhhh-----hhHHHHHHHHhc--CCCCcH-hhHHHHHHHhccc--------CcHHHHHHHHHHh
Q 043265 28 IGIFLDSPDIIELLNVCMDL-----KLLEAGKRFEND--GVRPNW-STFVGVITACGCF--------GAVDEGFQHFESV 91 (245)
Q Consensus 28 ~g~~p~~~t~~~ll~~~~~~-----~~~~~~~~~~~~--~~~p~~-~t~~~ll~~~~~~--------g~~~~a~~~~~~m 91 (245)
.....|...|..++++.... +..+.+..+.++ ...||- ..|..+..++... .++..+.+..+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34557889999999997654 345566666444 345653 3344333333221 1233444444432
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 92 TRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 92 ~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..-.....+...|.++--.....|++++|...+++.. ..|+...|..+-..+...|+.+.|.... ++++.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 2200122345677777666667899999999998875 6788888888889999999999887766 77777665
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.35 E-value=4.6 Score=36.21 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=106.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcCCC--CcHhhH-HHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDGVR--PNWSTF-VGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~--p~~~t~-~~ll~~~~~ 77 (245)
|-..|+.--+..-+..|..+|.+..+.+..+ .++.++++|.-||. ++.+.|-++.+.|.+ +|...| ..-++-+.+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4556777777777999999999999988887 88999999998876 455566666566543 454444 566777778
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhccCCHHHHHHHHHhcC--CC----CcHHHHHHHHHHHHhCCC
Q 043265 78 FGAVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGRLQKIAEAREFIRNMQ--ID----ASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~----~~~~~~~~li~~~~~~g~ 148 (245)
.++=..+..+|+..... ++.|| ...|..+|+-=++-|++.-+.++-+++. ++ +.-..-..+++-|...+.
T Consensus 448 lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred hCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 88888889999999774 66665 4789999999999999999998887774 23 222333444466655544
No 157
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=9.8 Score=32.54 Aligned_cols=83 Identities=11% Similarity=-0.047 Sum_probs=50.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
.++-+-|++++|..++..+.... .|+...+..|...+.-.|.+.+|+++.... +-++..-..|..---+.++-++-..
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-PKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCcHHHHHH
Confidence 45667899999999999987754 356667777777777789999888764331 1222222333333334444444444
Q ss_pred HHHHh
Q 043265 87 HFESV 91 (245)
Q Consensus 87 ~~~~m 91 (245)
+++++
T Consensus 143 fh~~L 147 (557)
T KOG3785|consen 143 FHSSL 147 (557)
T ss_pred HHHHH
Confidence 44433
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.24 E-value=1.4 Score=27.75 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHH
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSV 134 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~ 134 (245)
..|.+.++++.|.++++.+.. +.| +...|...-.+|.+.|++++|...|+..- ..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 567889999999999998865 344 45667778899999999999999998774 455543
No 159
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.75 E-value=13 Score=33.16 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=59.3
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCc--HHHHHHHHHHHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DAS--SVVWETLEKYAQ 144 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~--~~~~~~li~~~~ 144 (245)
--+-.++-+.|..++|.+.|.+|.++....-.......||.++...+...++..++.+-. + -|. ..+|++-+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555667899999999999997755433345677899999999999999999998875 1 244 467888775555
Q ss_pred hCCC
Q 043265 145 TEPG 148 (245)
Q Consensus 145 ~~g~ 148 (245)
..++
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 4444
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.38 E-value=9.3 Score=36.85 Aligned_cols=119 Identities=10% Similarity=0.066 Sum_probs=80.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-cH--------------
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP-NW-------------- 65 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p-~~-------------- 65 (245)
|-.|+..|-..+++++|.++.+.-.+..- .+...-|..+ .+.+.+....+..+.-.+..+ +.
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 45688999999999999999997655432 2334444444 444555555544432112111 22
Q ss_pred -----hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 66 -----STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 66 -----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
..+-.+-.+|-+.|+.+++..+++++.+ .. .-|....|-+-..|+.. ++++|..++.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 4556677778888999999999999976 33 22577788888888888 8888887554
No 161
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.13 E-value=3.4 Score=36.27 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH----HhcC-CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHH-HHH
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRF----ENDG-VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHF-LGI 107 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~----~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l 107 (245)
.+.|.+.|++--+...++.|+.+ .+.| +.+++..++++|.-++. |+..-|.++|+.=... -||.-.| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 46788888888888878877664 4556 67899999999998875 5666888999743322 3454443 467
Q ss_pred HHHHhccCCHHHHHHHHHhcC--CCCc--HHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 108 VDLYGRLQKIAEAREFIRNMQ--IDAS--SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 108 i~~y~~~g~~~~a~~~~~~m~--~~~~--~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
++-+.+-++-+.|+.+|+.-. ++.+ ..+|..||..-...|++..+-.+. ..++.|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 778888899999999998442 3334 578999999999999997665554 55566554
No 162
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.97 E-value=2.2 Score=37.37 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=45.4
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch----HHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL----EHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+...++.+-.+|.+.|++++|...|+...+ +.|+. .+|..+-.+|.+.|+.++|...+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466788888888888888888888887643 45663 3477888888888888888776654
No 163
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.92 E-value=7.7 Score=32.04 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCCCCcc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ----IDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+.+-+...+|-.++..+-.++|..+++.+++..-.++++... ...|...|..+|......||...
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 333333334445555555555555555555555555554432 12345555555555555555444
No 164
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=9.9 Score=34.30 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=75.7
Q ss_pred hHHHHHHH--HhcCCCCc-HhhHHHHHHHhcccCcHHHHHHHHHHhhhhc----CCCc-chHHHHHHHHHHhccCCHHHH
Q 043265 49 LLEAGKRF--ENDGVRPN-WSTFVGVITACGCFGAVDEGFQHFESVTRDY----DINP-TLEHFLGIVDLYGRLQKIAEA 120 (245)
Q Consensus 49 ~~~~~~~~--~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~p-~~~~~~~li~~y~~~g~~~~a 120 (245)
+++.|+++ +..++.|+ +...+=+=-..-..+.+.+|..+|+...... .-.+ ...+++-|=.+|.+.+..++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 44444443 44566664 4444444334455778888888887664210 0011 334567777889999999999
Q ss_pred HHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 121 REFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 121 ~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
...|+.-- .+.|+.+++++=-.|...|+++.|...+ ++-+.|+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99998653 3567788888777888889999987766 55544443
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.47 E-value=1.7 Score=26.69 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
..+.+.|++++|.+.|+...+.. | +...+..+-.++.+.|.++++...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667777888888888777665 4 344555555555555655555443
No 166
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=8.3 Score=34.28 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=32.3
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.-|.+.+++++..|++.+++ +......|+-.-..+...+++++|.+.|+..
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 34556677777777766553 3334556666667777777777777776544
No 167
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.90 E-value=0.95 Score=24.41 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHH
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLK 26 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~ 26 (245)
+|+.|=..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778899999999999999999854
No 168
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=87.36 E-value=23 Score=32.93 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=105.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH--------HhcCCCCcHhhHHHHHHHhc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF--------ENDGVRPNWSTFVGVITACG 76 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~--------~~~~~~p~~~t~~~ll~~~~ 76 (245)
|.-||++-.-++.|.+++.+.++ .+.-+...|.+--..=-++|..+...++ +..|+..|..-|-.=..+|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 56788888899999999999865 4777888888877777777777766553 56678888888888888888
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc--chHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCcc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINP--TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+.|.+--+..+...... .|++- --.||+.--+.+.+.+.++-|+.+|...- +..+..+|.....+-..+|..+.
T Consensus 491 ~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 88888887777776655 55543 24577777788888888888888876553 34455666666666666665554
No 169
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=8.2 Score=37.53 Aligned_cols=105 Identities=17% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-------------------------
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP------------------------- 63 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p------------------------- 63 (245)
+..++.+++|..+|++..- +....+.||..- +.++.|.++....-.|
T Consensus 1058 ai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~i---~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDM-----NVSAIQVLIENI---GSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHHh---hhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 4456778888888887532 334555555433 3333333332222211
Q ss_pred --cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHH
Q 043265 64 --NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 64 --~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~ 124 (245)
|+..|.-+|..+.+.|.+++-.+++. |.++..-+|.+. +.||-+|++.+++.+-+++.
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~-MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLL-MARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHH-HHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 34445555555555555555555553 222233444433 34555555555555544443
No 170
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.00 E-value=19 Score=34.90 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCC--CcHhhHHHHHHHh-----c
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR--PNWSTFVGVITAC-----G 76 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~--p~~~t~~~ll~~~-----~ 76 (245)
++-.+|-+.|+.++|..+|++..+.+ .-|+...|-+-..|+.. +++.|.+|...-+. .|..-|+.+..-. +
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 45567788899999999999999988 44788899999999988 99999888443221 1222233333211 1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CC-CcHHHHHHHHHHHH
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-ID-ASSVVWETLEKYAQ 144 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~-~~~~~~~~li~~~~ 144 (245)
...+++.=.++.+.+....|+.--+.++-.+-..|-+..+++++..+++..- .+ .|.....-++..|+
T Consensus 199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1223444444444444434444455667777788999999999999998874 33 34455555665554
No 171
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.80 E-value=8.2 Score=26.63 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.5
Q ss_pred HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 57 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
...-+.|++....+.|+||.|..++..|.++|+.++.+ +.+....|..+++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45567888888899999999999999999999888654 4444446766654
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.80 E-value=0.6 Score=29.08 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCC-CCccccccc
Q 043265 100 TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEP-GLLLGEPSS 156 (245)
Q Consensus 100 ~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g-~~~~~~~~~ 156 (245)
+..+|..+=..|.+.|++++|...|++.- ..| ++..|..+=.++...| +.+.|...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 45678888899999999999999998764 445 4566666667777877 566655444
No 173
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.70 E-value=15 Score=29.46 Aligned_cols=158 Identities=13% Similarity=-0.012 Sum_probs=108.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcC-CCC----cHhhHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFENDG-VRP----NWSTFVGVITAC 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~-~~p----~~~t~~~ll~~~ 75 (245)
|.++-..|-+.|..+.|.+-|....+.. |+ ....|..=.-+|..|.++++.+..+.- -.| -..||..+--+-
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 5667788999999999999999987643 32 222333333335556788876654332 222 245677777778
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccc
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~ 152 (245)
.+.|+++.|+..|..-.+ ..|+ ..+.-.|-+..-+.|+.-.|..+++... ..+...+.--.|..-.+.|+.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 899999999999987754 2343 3456788899999999999999998875 345555555556777777877765
Q ss_pred cccc--cccccccc
Q 043265 153 EPSS--SLRLSNKK 164 (245)
Q Consensus 153 ~~~~--~~~~~~~~ 164 (245)
..-. +.+.+|..
T Consensus 227 ~~Y~~qL~r~fP~s 240 (250)
T COG3063 227 QRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhCCCc
Confidence 5444 55555544
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.63 E-value=12 Score=30.69 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-+-..|...|+.++|...|+.+...+.-.|. ...+--+...|.+.|+.++|...|+...
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444566677777777777777654332221 1223334556667788888888877664
No 175
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.46 E-value=1.4 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHh
Q 043265 103 HFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 103 ~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+|+.|-+.|.+.|++++|..+|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466777888888888888888876
No 176
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.79 E-value=12 Score=33.31 Aligned_cols=14 Identities=0% Similarity=-0.315 Sum_probs=7.6
Q ss_pred eeccccccCchhhH
Q 043265 213 IKKNLRICGECHNF 226 (245)
Q Consensus 213 l~~~~~~~g~~~~a 226 (245)
+|++|.+++.-+.-
T Consensus 421 ~WNg~~~~~~~~l~ 434 (468)
T PF10300_consen 421 FWNGFPRMPKEELE 434 (468)
T ss_pred HHhccccCChHHHH
Confidence 55566655554444
No 177
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.60 E-value=25 Score=31.16 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=103.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH--HhcCCCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF--ENDGVRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~--~~~~~~p-~~~t~~~ll~~~~~~ 78 (245)
|+.|=+-|..-.+.+.|.+-+....+-+ +.|--.|=.|=.+|.-.+...-+.-. +...++| |...|.+|=.+|.+.
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 3444466777788888888888877654 24666777777777666544433322 3345666 689999999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC------CCCcHHHHHH--HH-HHHHhCCCC
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ------IDASSVVWET--LE-KYAQTEPGL 149 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~------~~~~~~~~~~--li-~~~~~~g~~ 149 (245)
+++++|.+.|..... .|-. +...|..|-+.|-+-++..+|-..|++.- -..+..|.-+ .+ ..+.+.++.
T Consensus 446 ~~~~eAiKCykrai~-~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAIL-LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred ccHHHHHHHHHHHHh-cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 999999999998765 3322 44778899999999999999998886552 1223322222 22 566677777
Q ss_pred ccccc
Q 043265 150 LLGEP 154 (245)
Q Consensus 150 ~~~~~ 154 (245)
++|..
T Consensus 524 ~~As~ 528 (559)
T KOG1155|consen 524 DEASY 528 (559)
T ss_pred HHHHH
Confidence 76543
No 178
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.57 E-value=6.1 Score=26.96 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=28.4
Q ss_pred hcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 58 NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 58 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
.....|++....+.|+||.|.+++..|.++|+.++.+ +..+...|..+++
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3445566666666666666666666666666655432 2223334555544
No 179
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.39 E-value=22 Score=32.92 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 102 EHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 102 ~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
..|++|.+-|.+.|.++.|.++|++
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5577777777777777777777754
No 180
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=85.33 E-value=15 Score=34.92 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=87.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhhhhhHHHHHHHHh----cCCCCcHhhHHHHHHHhcccCcH
Q 043265 8 HLCREREVKAALEVMDKLKNIGI--FLDSPDIIELLNVCMDLKLLEAGKRFEN----DGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~~~~----~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
++.+-...+...-+...+...++ .-++-.|.-+..+|...|.+.+|..+.. .-.--+...|--+-.+|-..|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44444555556666666666664 4456788889999999998888877532 22223466888889999999999
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcCCCCc
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQIDAS 132 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~ 132 (245)
+.|.+.++.... ..|+ .-.-..|-..|-+.|+.|+|.+.++.+- .||
T Consensus 466 e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~-~~D 513 (895)
T KOG2076|consen 466 EEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQII-NPD 513 (895)
T ss_pred HHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc-CCC
Confidence 999999988765 3453 3344577788899999999999998875 444
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.96 E-value=14 Score=27.64 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=26.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
-.|=-+|-..|++++|...|..... +.| |...+=-+=.+|.+.|+.+.|++-|+
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333344445555555555554422 222 33444445555555555555555554
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.90 E-value=23 Score=32.87 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=32.9
Q ss_pred hhHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 2 LNSELKHLCREREVK--AALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~--~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
|++.=+||.+-++.. +...-+++|+++|-.|+..... ..|+..|.+.+|.++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAkl 654 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKL 654 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHH
Confidence 455567888777644 5555577888999889876543 334555555555443
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.70 E-value=2.8 Score=23.64 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=14.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 103 HFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 103 ~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
++..+-..|.+.|+.++|.++|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666666666555
No 184
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.40 E-value=13 Score=28.31 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhhhhhHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDS--PDIIELLNVCMDLKLLEA 52 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~ 52 (245)
.+-..|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.+...+++..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666666555443321 233344444444444333
No 185
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.24 E-value=8.5 Score=31.75 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=54.3
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC--------CCCcHHHHH
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--------IDASSVVWE 137 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~--------~~~~~~~~~ 137 (245)
++..++..+...|+++.+.+.+++..+ ..| +...|..||.+|.+.|+...|.+.|+++. ++|...++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 455677778888888888888887755 233 66778888889999888888888887663 567777766
Q ss_pred HHHHH
Q 043265 138 TLEKY 142 (245)
Q Consensus 138 ~li~~ 142 (245)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66655
No 186
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.19 E-value=8 Score=32.46 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=63.8
Q ss_pred cCCCCCHHHHHHHHHHhhhhhhHHHHHHH----Hh---cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 043265 28 IGIFLDSPDIIELLNVCMDLKLLEAGKRF----EN---DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT 100 (245)
Q Consensus 28 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~----~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 100 (245)
.|...+..+...++..-.....++.+... .. .-..|+...|.. +.-| -.=+.+++..++..=.+ +|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~-irll-lky~pq~~i~~l~npIq-YGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW-IRLL-LKYDPQKAIYTLVNPIQ-YGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH-HHHH-HccChHHHHHHHhCcch-hccccc
Confidence 45556667777777766655556655432 11 123344443322 2222 22356677777766556 899999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 101 LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 101 ~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-++++.+||.+.+.|++.+|..+...|
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999999988877655
No 187
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.19 E-value=28 Score=30.50 Aligned_cols=152 Identities=11% Similarity=-0.019 Sum_probs=84.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHH-HHHhcc-cCcH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGV-ITACGC-FGAV 81 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~l-l~~~~~-~g~~ 81 (245)
.+.+.++.++|.=-|..... +.| +...|..|+..|-..|.+.+|.-+-+.- ++.+..+.+.+ -..|.- ...-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 45566788888877877654 343 5688999999998888887776552221 12223332222 011111 2234
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc--c
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS--S 157 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~--~ 157 (245)
++|..+++.- ..+.|+ +...+.+...+...|..+++..++++-- ..||....+.|=...+.......+..-+ +
T Consensus 421 EKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5566666533 234554 2334555566666666666766665543 4566666665555555444444444444 5
Q ss_pred ccccccc
Q 043265 158 LRLSNKK 164 (245)
Q Consensus 158 ~~~~~~~ 164 (245)
+++.|+.
T Consensus 498 Lr~dP~~ 504 (564)
T KOG1174|consen 498 LRQDPKS 504 (564)
T ss_pred HhcCccc
Confidence 5555554
No 188
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.06 E-value=3.7 Score=27.97 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 16 KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 16 ~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
-++.+-++.+...++.|++....+-|+||-+.+++..|.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~ 64 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRI 64 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555555555556666666666666666666666665554
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.56 E-value=3.9 Score=26.04 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=16.2
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
..+++.+-..|...|+.++|++.+++.
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666666543
No 190
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.45 E-value=2.4 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 101 LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 101 ~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+++.|-..|...|++++|..++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 357788888999999999999888765
No 191
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.27 E-value=6.1 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNV 43 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~ 43 (245)
+....+.|...++..++++|.+.|+.-+...|..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44556788899999999999999999888888888764
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.18 E-value=16 Score=30.11 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---CC--HHHHHHHHHHhhhhhhHHHHHHH--------HhcCCCC-cHhhHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIF---LD--SPDIIELLNVCMDLKLLEAGKRF--------ENDGVRP-NWSTFVG 70 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~---p~--~~t~~~ll~~~~~~~~~~~~~~~--------~~~~~~p-~~~t~~~ 70 (245)
.-..|-..|++++|.+.|.+....... +. ...|......|.+ .+++.+.+. ...|-.. -...+.-
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345666778888888888776332111 11 2233333333333 244444332 2223222 2456777
Q ss_pred HHHHhccc-CcHHHHHHHHHHhhhhcCC--Cc--chHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 71 VITACGCF-GAVDEGFQHFESVTRDYDI--NP--TLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 71 ll~~~~~~-g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
+-..|-.. |+++.|.+.|++...-+.- .+ -..++.-+...+.+.|++++|..+|++..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888 8999999988876442111 12 13456778899999999999999998763
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=82.86 E-value=10 Score=33.44 Aligned_cols=56 Identities=9% Similarity=-0.075 Sum_probs=40.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhhhhhhHHHHHHHHhc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDS----PDIIELLNVCMDLKLLEAGKRFEND 59 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~~~~~~ 59 (245)
|+.+=.+|.+.|++++|+..|++..+.+ |+. .+|..+-.+|++.|..++|....+.
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556667888888888888888876643 553 4588888888888888877665433
No 194
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.81 E-value=7.9 Score=36.79 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=6.9
Q ss_pred cCcHHHHHHHHHH
Q 043265 78 FGAVDEGFQHFES 90 (245)
Q Consensus 78 ~g~~~~a~~~~~~ 90 (245)
.|.+|.|+.++..
T Consensus 925 ~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 925 VGEMDAALSFYSS 937 (1416)
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.79 E-value=7.1 Score=31.93 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=65.8
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch----HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL----EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWET 138 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~ 138 (245)
...|...+.-..+.|++++|...|+.....+ |+. ..+--+-..|...|+.++|...|+.+- ..|+ .....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3456666666566799999999999987643 443 345567889999999999999998884 2233 223333
Q ss_pred H---HHHHHhCCCCccccccc--cccccccc
Q 043265 139 L---EKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 139 l---i~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
+ ...+...|+.+.|.... +.+.+|+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3 34555678888777665 55555543
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=18 Score=33.82 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccC
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g 115 (245)
|.+--+.-+...|.-..|+++++.==-||..-|--=+.+++..+++++-+++-++++. ..-|.-++.++.+.|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQG 758 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcc
Confidence 3333444444444445555544443344555555555555555555444433333221 222334444455555
Q ss_pred CHHHHHHHHHhcC
Q 043265 116 KIAEAREFIRNMQ 128 (245)
Q Consensus 116 ~~~~a~~~~~~m~ 128 (245)
+.++|.+.+.+..
T Consensus 759 n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG 771 (829)
T ss_pred cHHHHhhhhhccC
Confidence 5555555555443
No 197
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.80 E-value=6.6 Score=27.06 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHH---hcCCCCcHhhHHHHHH
Q 043265 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFE---NDGVRPNWSTFVGVIT 73 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~---~~~~~p~~~t~~~ll~ 73 (245)
.-+..+-++.+...++.|++....+-|+||-+.+++..|.++. +..+.+....|..+|.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3367777888888999999999999999999999999987763 2334444447777663
No 198
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.73 E-value=2.5 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHh
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKN 27 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~ 27 (245)
++|.|-..|...|++++|+.++.+...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 367788899999999999999998754
No 199
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.15 E-value=17 Score=27.29 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=36.2
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHH-HHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHF-LGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQT 145 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~ 145 (245)
.+.++.++++.+++.+.- ..|..... ..-...+.+.|++.+|.++|+++. -.|....-.+|+..|-.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 345577777777776643 34432221 122344556677777777777765 23343444555555533
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.54 E-value=18 Score=34.90 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC--C-CC--HHHHHHHHHHhhhhhhHHHHHHHHh--------cCCC--C-cHhhH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGI--F-LD--SPDIIELLNVCMDLKLLEAGKRFEN--------DGVR--P-NWSTF 68 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~--~-p~--~~t~~~ll~~~~~~~~~~~~~~~~~--------~~~~--p-~~~t~ 68 (245)
+-..+...|++++|...+.+.....- . +. ..++..+-..+...|+++.+..... .+.. | ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 34456678999999888888753211 1 11 2333444455566677777755421 2211 1 22334
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhc-CCCc--chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDY-DINP--TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+-..+...|++++|...+++...-. ...+ ....+..+-..+...|+.++|.+.+...
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555666799999988887663310 1112 2334455666788889999998877655
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.45 E-value=37 Score=29.59 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=57.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----hhhhhHHHHHHHH--hcCCCCc-HhhHHHHHHHhcccCcHHH
Q 043265 11 REREVKAALEVMDKLKNIGIFLDSPDIIELLNVC----MDLKLLEAGKRFE--NDGVRPN-WSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~~~~~~--~~~~~p~-~~t~~~ll~~~~~~g~~~~ 83 (245)
-.|+++.|.+=|+-|.. |+.|--.=|+++ -+.|+.+.+.+-- ..+..|. .-.+.+.|...|..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 45888889888888865 233333323332 3446666666542 2344454 4567889999999999999
Q ss_pred HHHHHHHhhhhcCCCcch
Q 043265 84 GFQHFESVTRDYDINPTL 101 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~ 101 (245)
|+++.+.-+...-+++++
T Consensus 207 AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHHHHHHHHHHhhchhh
Confidence 999999877655555654
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=80.18 E-value=19 Score=25.63 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCc--HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 50 LEAGKRFENDGVRPN--WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 50 ~~~~~~~~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+..+++-...|.... ...+-.+-+.+...|+.++|..+|++...+..-.+ +......+-.++...|+.++|...+-.
T Consensus 21 i~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 21 IPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333344455565544 34555666777778888888888877755321100 111222234466677888887776644
Q ss_pred cCCCCcHHHHHHHHHHHH
Q 043265 127 MQIDASSVVWETLEKYAQ 144 (245)
Q Consensus 127 m~~~~~~~~~~~li~~~~ 144 (245)
.- -++...|.-=|..|.
T Consensus 101 ~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 101 AL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HH-HHHHHHHHHHHHHHH
Confidence 32 334445555555543
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=79.62 E-value=50 Score=31.72 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=83.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh--hhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHH
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCM--DLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~ 83 (245)
..-.+++.+|.....++.++. |+ ..|..++.++. +.|..+++..+.+. +.++ |..|..++-..|...++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 345577889998888887652 44 36777888875 55777777665332 2222 78899999999999999999
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHH----HHHHHHhcC
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE----AREFIRNMQ 128 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~----a~~~~~~m~ 128 (245)
|..+++.... ..|+..-...+..+|.|-+++.+ |.++++..+
T Consensus 96 ~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 96 AVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred HHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999997744 56777667778888888887754 566666655
No 204
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.54 E-value=12 Score=31.45 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=60.3
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCC--HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHH
Q 043265 11 REREVKAALEVMDKLKNI---GIFLD--SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~---g~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
....++.++..+-+++.. -..|+ .++|.-++..|--...+..+..=...|+-||.+|++.+|+.+.+.+++.+|.
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa 155 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAA 155 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHH
Confidence 346688888888877543 22333 4555555555544455555555577899999999999999999999999998
Q ss_pred HHHHHhhhh
Q 043265 86 QHFESVTRD 94 (245)
Q Consensus 86 ~~~~~m~~~ 94 (245)
++.-.|...
T Consensus 156 ~vvt~~~~q 164 (418)
T KOG4570|consen 156 SVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHH
Confidence 887777553
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.47 E-value=7.5 Score=24.17 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR 55 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 55 (245)
..|.+.+++++|.++++.+...+- .+...|...-..+.+.|.++.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~ 50 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALE 50 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHH
Confidence 457788888888888888877532 134445445555555555555544
No 206
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=78.74 E-value=13 Score=36.01 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHH--HHhcccCcHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVI--TACGCFGAVD 82 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll--~~~~~~g~~~ 82 (245)
-|+..-+...|.+.|+...+-+- .|...+-...+.|++...++.|..+.-. .-+.-...+|-+- -.|-..++..
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 34444455667777777655432 3567777888888888888877664111 1111111122111 1234456666
Q ss_pred HHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 83 EGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
+|..-|+... .+.| |...|..+..+|.++|+..-|.++|.+.. +.|+
T Consensus 580 ~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 580 GAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 6666665442 3444 66778888888888888888888887665 3444
No 207
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.57 E-value=25 Score=26.14 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=41.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHH-HHHHHHHHhccCCHHHHHHHHHhcCCCC-cHHHHHHHHHHHHh
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEH-FLGIVDLYGRLQKIAEAREFIRNMQIDA-SSVVWETLEKYAQT 145 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~y~~~g~~~~a~~~~~~m~~~~-~~~~~~~li~~~~~ 145 (245)
..+++++++.+++.|.- ..|...- -..-...+.+.|++++|.++|.+..-.+ ...--.+|+..|-.
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 37788889998888843 4454321 2233455667889999999999886333 33333444444433
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.45 E-value=4 Score=22.97 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=23.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI 28 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~ 28 (245)
|..+-..|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455678899999999999999999876
No 209
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.18 E-value=2.5 Score=30.65 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+|+.+.+.+.++...++++.+.. .+-.-+...++.++..|++.+..+...++++..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~ 68 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS 68 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccc
Confidence 345666666677777777766654 233345666677777777777666666666644
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.17 E-value=49 Score=29.39 Aligned_cols=128 Identities=9% Similarity=-0.008 Sum_probs=66.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHhhhhhhHHHHHH-H-HhcCCCCcHhhHHHHHHH--hcccC
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDS------PDIIELLNVCMDLKLLEAGKR-F-ENDGVRPNWSTFVGVITA--CGCFG 79 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~~~~-~-~~~~~~p~~~t~~~ll~~--~~~~g 79 (245)
-+.+++.+|+++|.+.-+. +..++ +.-+-+|+||.... ++..+. + .-+...| ...|-.+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 3568899999999987543 22232 33456777776543 222211 1 1111112 2223333333 23556
Q ss_pred cHHHHHHHHHHhhhhc-CC------------CcchHHHHHHHHHHhccCCHHHHHHHHHhcC-------CCCcHHHHHHH
Q 043265 80 AVDEGFQHFESVTRDY-DI------------NPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-------IDASSVVWETL 139 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~-~~------------~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-------~~~~~~~~~~l 139 (245)
...+|.+.+..-.++. +- -+|...=++.++.+.+.|++.+++.++++|. ..-++-+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 6666666665443310 11 1233334566677777777777777777663 23566667663
Q ss_pred H
Q 043265 140 E 140 (245)
Q Consensus 140 i 140 (245)
+
T Consensus 174 v 174 (549)
T PF07079_consen 174 V 174 (549)
T ss_pred H
Confidence 3
No 211
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.73 E-value=11 Score=28.96 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=46.2
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
...+.......+.+......+...+-....|+..+|..++..+...|+.++|.+...++.
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444446677776676666666655677999999999999999999999999988886
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.24 E-value=20 Score=29.59 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhh----hcCCCcchHHHHHHHHH
Q 043265 62 RPNWSTFVGVITACGCFGAVDEGFQHFESVTR----DYDINPTLEHFLGIVDL 110 (245)
Q Consensus 62 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~li~~ 110 (245)
+-|...|-.++.+|.+.|+...|.+.|+.+.. +.|+.|...+.......
T Consensus 184 p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 184 PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 34889999999999999999999999988754 57999998887776666
No 213
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.10 E-value=7.6 Score=28.63 Aligned_cols=49 Identities=12% Similarity=-0.011 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhhhhh-----HHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 32 LDSPDIIELLNVCMDLKL-----LEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 32 p~~~t~~~ll~~~~~~~~-----~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
-+..+|.+++++.++... +..+.-|++.+.+++..-|..+|++|.+.-.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 356788899988876653 4445556777888999999999998877633
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=74.79 E-value=12 Score=27.58 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-+.|++++|.+.|+.+...+...|- ....--|+.+|.+.|++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4678999999999999876666553 345567899999999999999988776
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.20 E-value=76 Score=29.14 Aligned_cols=119 Identities=12% Similarity=0.128 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc----------CCCCcHh
Q 043265 5 ELKHLCREREVKAALEVMD--------KLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND----------GVRPNWS 66 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~--------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~----------~~~p~~~ 66 (245)
++.-....|+++.|.+++. .+.+.+..|. +...++..+.+.++-+.+..+... +-.--..
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 4556677899999999999 6666666554 455566666665544434333111 1111112
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
++--+..---+.|+.++|..+++++.+. ..+|..+...+|.+|++. +.+.|+.+=..+.
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 2222333334579999999999999762 346888999999999987 5888888877775
No 216
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.17 E-value=82 Score=30.45 Aligned_cols=149 Identities=10% Similarity=-0.066 Sum_probs=87.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhhhhhhHHHHHHHHhc--------CC-CCcHhhHHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDS----PDIIELLNVCMDLKLLEAGKRFEND--------GV-RPNWSTFVGVITA 74 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~~~~~~--------~~-~p~~~t~~~ll~~ 74 (245)
.+...|++++|...+.+....--..+. ...+.+-..+...|.++.+...... |- .+-..+...+-..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345789999999999987653111122 2334444445556777776554222 11 1123345566667
Q ss_pred hcccCcHHHHHHHHHHhhhh---cCCC--c-chHHHHHHHHHHhccCCHHHHHHHHHhcC-----CCCc--HHHHHHHHH
Q 043265 75 CGCFGAVDEGFQHFESVTRD---YDIN--P-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-----IDAS--SVVWETLEK 141 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~---~~~~--p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-----~~~~--~~~~~~li~ 141 (245)
+...|+++.|...+++...- .+.. | ....+..+-..+...|++++|...+.... ..+. ...+..+-.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999988765331 2221 1 23345556667777899999998887652 1122 223333335
Q ss_pred HHHhCCCCccccccc
Q 043265 142 YAQTEPGLLLGEPSS 156 (245)
Q Consensus 142 ~~~~~g~~~~~~~~~ 156 (245)
.....|+.+.+....
T Consensus 621 ~~~~~G~~~~A~~~l 635 (903)
T PRK04841 621 ISLARGDLDNARRYL 635 (903)
T ss_pred HHHHcCCHHHHHHHH
Confidence 666777777665443
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.81 E-value=65 Score=28.17 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=87.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHhhhh---hhHHHHHH--HHhcCCCCcHhh-HHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIG-IFLDSPD--IIELLNVCMDL---KLLEAGKR--FENDGVRPNWST-FVGVI 72 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g-~~p~~~t--~~~ll~~~~~~---~~~~~~~~--~~~~~~~p~~~t-~~~ll 72 (245)
+.+.|...|..|+|+.|+++.+.-+... +++++.- =..||.+-+.. .+...++. .......||..- -..--
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 4578899999999999999999877544 3566532 33444443322 12222322 244556677443 33445
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHH--HH--HHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEA--RE--FIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a--~~--~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
.++.+.|++.++-.+++.+=+ -+|.... ..+..+.+.|+.-.. .+ -++.|+ +.+..+--++..+....|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK---~ePHP~i--a~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWK---AEPHPDI--ALLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHh---cCCChHH--HHHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccc
Confidence 778999999999999998844 3454443 355667777764322 21 234454 3344444445566666666
Q ss_pred Ccccc
Q 043265 149 LLLGE 153 (245)
Q Consensus 149 ~~~~~ 153 (245)
+..+.
T Consensus 345 ~~~AR 349 (531)
T COG3898 345 FSAAR 349 (531)
T ss_pred hHHHH
Confidence 65544
No 218
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.76 E-value=9 Score=18.78 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=12.7
Q ss_pred HHHHHHHhccCCHHHHHHHHH
Q 043265 105 LGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 105 ~~li~~y~~~g~~~~a~~~~~ 125 (245)
..+-.++...|+.++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 219
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.40 E-value=20 Score=23.41 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=35.4
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHH
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~ 124 (245)
....-++|...|....+...-.|+ -.+...|+.+|+.-|+.++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888887664333344 356889999999999998887743
No 220
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.19 E-value=66 Score=26.81 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcccc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~ 153 (245)
+.+++.+|...|.+..+ +.| |.+-|.-=--+|++.|..+.|.+-.+.-- +.|. ...|..|=.+|...|+.+.|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 34455555555544422 333 23333344455555555555544333222 2222 234444444444445544444
Q ss_pred ccc--cccccccc
Q 043265 154 PSS--SLRLSNKK 164 (245)
Q Consensus 154 ~~~--~~~~~~~~ 164 (245)
..+ ++++.|+.
T Consensus 170 ~aykKaLeldP~N 182 (304)
T KOG0553|consen 170 EAYKKALELDPDN 182 (304)
T ss_pred HHHHhhhccCCCc
Confidence 443 44444444
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.79 E-value=38 Score=31.90 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 32 LDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 32 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
||.-.|-.=+.+++..+.+++.+++.++.-. +.-|--.+.+|.+.|+.++|.+++-
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhh
Confidence 3444444444445555555544444322111 3334444455555555555554443
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.57 E-value=56 Score=31.26 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcH-hhHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 043265 17 AALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNW-STFVGVITACGCFGAVDEGFQHFESVTRDY 95 (245)
Q Consensus 17 ~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 95 (245)
+-...++.+.+.|+ .+...-+.||++|.+.++.+...++.+.+-.--. .-.-..+..|.+.+-.++|..+-..-..
T Consensus 415 nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 33344444566666 3555677888888888888877777655431111 1245677777888888887766543321
Q ss_pred CCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCC---------------C-CcHHHHHHHHHHHHhCCCCcccc
Q 043265 96 DINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQI---------------D-ASSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 96 ~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~---------------~-~~~~~~~~li~~~~~~g~~~~~~ 153 (245)
... .+--.+-..|+.++|.+.+..++. + .-..|.+.++..|...++....+
T Consensus 492 ----he~---vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~ 558 (933)
T KOG2114|consen 492 ----HEW---VLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGK 558 (933)
T ss_pred ----CHH---HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCc
Confidence 122 233334446789999999988861 1 11256677778887776554443
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=68.30 E-value=55 Score=25.56 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=19.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG 53 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 53 (245)
+....|+..+|...|.+...-=+.-|....-.+-++-...+.+..+
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3444455555555555443322233444444444444444444433
No 224
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=67.54 E-value=52 Score=28.64 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=37.8
Q ss_pred cCCCcchHHHHHHHHHHhccCCHHHHHH--------------------HHHhcCCCCcHHHHHHHHHHHHhCCCCc
Q 043265 95 YDINPTLEHFLGIVDLYGRLQKIAEARE--------------------FIRNMQIDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 95 ~~~~p~~~~~~~li~~y~~~g~~~~a~~--------------------~~~~m~~~~~~~~~~~li~~~~~~g~~~ 150 (245)
.|...|...+.-.+..+...--++||++ +++... .||+.+|.++...|+.-+-+.
T Consensus 180 ~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylT-aPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 180 EGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLT-APNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCC-CCCchHHHHHHHHcCCccccC
Confidence 3555666666666666666666788874 333333 799999999998887766544
No 225
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=73 Score=28.75 Aligned_cols=100 Identities=11% Similarity=0.155 Sum_probs=75.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHH--HHhcCCCCcH-hhHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR--FENDGVRPNW-STFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~--~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a 84 (245)
+....|+++.|+.+|.+...-. ++|.+.|+.=..+|+..|.++.+.+ -+.....|+. .-|+-.=.+....|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4567899999999999976543 3478899999999999998888755 2445667774 5677777777778999999
Q ss_pred HHHHHHhhhhcCCCcc-hHHHHHHHHHH
Q 043265 85 FQHFESVTRDYDINPT-LEHFLGIVDLY 111 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~-~~~~~~li~~y 111 (245)
..-|.+=.+ ..|+ ...++-+.+++
T Consensus 90 ~~ay~~GL~---~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLE---KDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhh---cCCchHHHHHhHHHhh
Confidence 999975432 3454 46677777777
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=28 Score=28.87 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=65.2
Q ss_pred CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccC-CHHHHHHHHHhcC-CCCcHHHHHHH
Q 043265 62 RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ-KIAEAREFIRNMQ-IDASSVVWETL 139 (245)
Q Consensus 62 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g-~~~~a~~~~~~m~-~~~~~~~~~~l 139 (245)
+-|...|--|=.+|...|+++.|..-|..-.+=.|-.|+...--.=+-.|...| +..++..+|++.- .+|+.++=.++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446778888888888888888888888876543333344322111122233333 3457888888774 56777777777
Q ss_pred H-HHHHhCCCCccccccc--cccccc
Q 043265 140 E-KYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 140 i-~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
+ ..+...|+...|...+ ++++.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 7 7777788888777666 555544
No 227
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.39 E-value=33 Score=26.48 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhcCCCcch------HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Q 043265 81 VDEGFQHFESVTRDYDINPTL------EHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEP 147 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g 147 (245)
++.|..+|+.+.++....-+. ..-...+-.|.++|.+++|.+++++.-..|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 567788888886653321011 1233557789999999999999998865777777666665555543
No 228
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=66.28 E-value=72 Score=26.14 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=79.2
Q ss_pred HcCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHhhhh-hhHHHHHHH--------HhcCCCC-cHhhHHHHHHH
Q 043265 11 REREVKAALEVMDKLKN----IGIFLD--SPDIIELLNVCMDL-KLLEAGKRF--------ENDGVRP-NWSTFVGVITA 74 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~----~g~~p~--~~t~~~ll~~~~~~-~~~~~~~~~--------~~~~~~p-~~~t~~~ll~~ 74 (245)
+.+++++|.+.|.+..+ .|- |+ ...+..+-..|-.. |+++.|.+. ...+.+- -..++.-+...
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 33367777777666532 232 22 23455555556555 666665443 2333111 24567788888
Q ss_pred hcccCcHHHHHHHHHHhhhhcCC-----CcchH-HHHHHHHHHhccCCHHHHHHHHHhcC-CCC------cHHHHHHHHH
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDI-----NPTLE-HFLGIVDLYGRLQKIAEAREFIRNMQ-IDA------SSVVWETLEK 141 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~-~~~~li~~y~~~g~~~~a~~~~~~m~-~~~------~~~~~~~li~ 141 (245)
+.+.|++++|.++|+++... .. .+++. .|-..+-++...|+.-.|.+.|++.. ..| ....-..||.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 99999999999999988652 22 22332 23334446667899999999998764 223 2355677778
Q ss_pred HHHhCCCCcc
Q 043265 142 YAQTEPGLLL 151 (245)
Q Consensus 142 ~~~~~g~~~~ 151 (245)
+|.. ||.+.
T Consensus 244 A~~~-~D~e~ 252 (282)
T PF14938_consen 244 AYEE-GDVEA 252 (282)
T ss_dssp HHHT-T-CCC
T ss_pred HHHh-CCHHH
Confidence 8755 45443
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.89 E-value=77 Score=31.61 Aligned_cols=126 Identities=10% Similarity=0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh
Q 043265 4 SELKHLCRER--EVKAALEVMDKLKNIGIFLD--------------SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST 67 (245)
Q Consensus 4 ~ll~~~~~~g--~~~~A~~lf~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t 67 (245)
++|.+|++.+ .+++|++...+.+...+.++ ...|++-|..| +++.|.. .....+-|+.-
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtY----Dl~Lal~-VAq~SqkDPkE 869 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTY----DLDLALL-VAQKSQKDPKE 869 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhccc----chHHHHH-HHHHhccChHH
Confidence 6788999999 78888888888775221111 12222222222 3333333 33445567777
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhccC--CHHHHHHHHHhcC--------CCCcHHH
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGRLQ--KIAEAREFIRNMQ--------IDASSVV 135 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~~g--~~~~a~~~~~~m~--------~~~~~~~ 135 (245)
|-..|.-+-+..-. .+ .+..| ..-|...+.-+.++| .++++..+.++-+ .+||...
T Consensus 870 yLP~L~el~~m~~~----------~r--kF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~ 937 (1265)
T KOG1920|consen 870 YLPFLNELKKMETL----------LR--KFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK 937 (1265)
T ss_pred HHHHHHHHhhchhh----------hh--heeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH
Confidence 77766655421100 00 11111 122344444444444 4555555544332 3677777
Q ss_pred HHHHHHHHHhC
Q 043265 136 WETLEKYAQTE 146 (245)
Q Consensus 136 ~~~li~~~~~~ 146 (245)
+.-+..+|+.+
T Consensus 938 ~k~i~~~ya~h 948 (1265)
T KOG1920|consen 938 QKVIYEAYADH 948 (1265)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.77 E-value=47 Score=24.37 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=48.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHHHHhcccCcHHHHHHH
Q 043265 11 REREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVITACGCFGAVDEGFQH 87 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 87 (245)
.+|++......+..+-. +..-+..-++.....|.-++..++... +-+|++...-.+-.||.+.|+..++.++
T Consensus 68 ~C~NlKrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 45556666555554422 234556667777777766666555333 4567888888888999999999999999
Q ss_pred HHHhhhhcCC
Q 043265 88 FESVTRDYDI 97 (245)
Q Consensus 88 ~~~m~~~~~~ 97 (245)
+.+..+ .|+
T Consensus 143 l~~ACe-kG~ 151 (161)
T PF09205_consen 143 LKEACE-KGL 151 (161)
T ss_dssp HHHHHH-TT-
T ss_pred HHHHHH-hch
Confidence 988866 454
No 231
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=63.62 E-value=1.3e+02 Score=28.07 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCcHhhH--HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHH
Q 043265 62 RPNWSTF--VGVITACGCFGAVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVW 136 (245)
Q Consensus 62 ~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~ 136 (245)
+|....| --+...+-+.|+++.|+...+... +-.|+. .-|.+=-..+.-+|.+++|...+++-. + .||..+=
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 4444433 456777888999999999998664 345664 445566688899999999999998765 1 4554332
Q ss_pred HHHHHHHHhCCCCccccccc
Q 043265 137 ETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~~~~~ 156 (245)
.-=.....++..++.|..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHccccHHHHHHH
Confidence 22233444556666665543
No 232
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.25 E-value=90 Score=26.32 Aligned_cols=118 Identities=14% Similarity=-0.010 Sum_probs=72.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhHHHHHH---HHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 7 KHLCREREVKAALEVMDKLKNI-GIFLDSPDIIELLNVCMDLKLLEAGKR---FENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~---~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
.-+-+.|+++.|.+-+.+|+-+ .-..|++|...+.-.=....-.+..++ +... -+.-..||..++-.||+..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHHHHHhhhHHHh
Confidence 3456789999999999999744 335688887665433332211222222 2222 3346789999999999999999
Q ss_pred HHHHHHHHhhhhcCCC-cchHHHHHHHHHHhc-cCCHHHHHHHHHhc
Q 043265 83 EGFQHFESVTRDYDIN-PTLEHFLGIVDLYGR-LQKIAEAREFIRNM 127 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~-p~~~~~~~li~~y~~-~g~~~~a~~~~~~m 127 (245)
.|-.++.+-.. .-+. .+.+.|+.| +++.. .-..++|.+-++.+
T Consensus 328 lAADvLAEn~~-lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 328 LAADVLAENAH-LTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhCcc-hhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 99999875533 2221 345555533 33333 34566776655544
No 233
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=62.95 E-value=20 Score=23.18 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=34.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh---hHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS---TFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~---t~~~ll~~~~~~g~~~~a 84 (245)
..++.|+++-...+++ .+...+. -.+ .+...+..|..+.++.+.+.|..|+.. -++++.. .+..|..+-+
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~-~~~-~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~ 75 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL-GNT-ALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHY-AAENGNLEIV 75 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS-SSB-HHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHHHH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC-CCC-HHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHH-HHHcCCHHHH
Confidence 3456666655544444 3332222 112 333334556777777777777777654 3333333 3445555433
No 234
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.82 E-value=8 Score=20.49 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHhccCCHHHHH
Q 043265 100 TLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 100 ~~~~~~~li~~y~~~g~~~~a~ 121 (245)
+...|+-+-..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4677778888888888888775
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.70 E-value=1e+02 Score=27.40 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=60.4
Q ss_pred HHHHcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 8 HLCREREVKAALEVMD-KLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
-..-.|+++++.+... .-.-..+ | ..-.+.++.-+-+.|-.+.|.++... | ..-|. -..+.|+++.|.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---~-~~rFe----LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTD---P-DHRFE----LALQLGNLDIALE 339 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----H-HHHHH----HHHHCT-HHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---h-HHHhH----HHHhcCCHHHHHH
Confidence 3445677777655554 1111222 2 34477777777777888888776322 1 12222 2335677776665
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 150 (245)
+..+. ++...|..|-+...+.|+++-|++.|++.+ -|..|+-.|...|+.+
T Consensus 340 ~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 340 IAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HH
T ss_pred HHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHH
Confidence 54332 245567777777777777777777777665 2334444444444433
No 236
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=62.05 E-value=93 Score=25.97 Aligned_cols=114 Identities=11% Similarity=0.173 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHhhhh-----hhHHHH-HHHHhcCCCCc--HhhHHHHHHHhcccCc--
Q 043265 14 EVKAALEVMDKLKNIGI---FLDSPDIIELLNVCMDL-----KLLEAG-KRFENDGVRPN--WSTFVGVITACGCFGA-- 80 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~---~p~~~t~~~ll~~~~~~-----~~~~~~-~~~~~~~~~p~--~~t~~~ll~~~~~~g~-- 80 (245)
...+|.++|+.|++... .|+..++..+|..-... ...+.. ..+...|+..+ .+.-+.+|.-+.....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 36689999999997653 57788888887762221 112222 23455587763 4555566655554443
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHH-HHHHhccCC---HHHHHHHHHhcC
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGI-VDLYGRLQK---IAEAREFIRNMQ 128 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~y~~~g~---~~~a~~~~~~m~ 128 (245)
+..+.++++.+++ .|+++...+|..+ +-++...+. +++..++.+...
T Consensus 198 v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~ 248 (297)
T PF13170_consen 198 VARVIELYNALKK-NGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELK 248 (297)
T ss_pred HHHHHHHHHHHHH-cCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 4478889999988 6999888888644 333333333 333444444443
No 237
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.80 E-value=62 Score=23.87 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHhhhhhhHHHHHHHHh-------cCC--CCcHhhHHHHHHHhcccCc-HHHHHH
Q 043265 19 LEVMDKLKNIGIFLDS--PDIIELLNVCMDLKLLEAGKRFEN-------DGV--RPNWSTFVGVITACGCFGA-VDEGFQ 86 (245)
Q Consensus 19 ~~lf~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~-------~~~--~p~~~t~~~ll~~~~~~g~-~~~a~~ 86 (245)
.+....|++.+..++. ..+|++|...+..+.+....++.+ ..+ ..+..+|.+++.+.+.... ---+..
T Consensus 22 ~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 22 NSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred HHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 3445566777776664 679999988776544443333211 111 3467789999999988877 556788
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhcc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRL 114 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~ 114 (245)
+|..|++ .+++++..-|..||.+..+.
T Consensus 102 Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 102 LFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 9999987 68899999999999997775
No 238
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.42 E-value=1.2e+02 Score=28.56 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhhhhhHHHHH------H-HHhcCCCCcHhhHHHHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI--GIFLDSPDIIELLNVCMDLKLLEAGK------R-FENDGVRPNWSTFVGVITA 74 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~~~------~-~~~~~~~p~~~t~~~ll~~ 74 (245)
+++.+|..+|++..+.++++.+... |-+.=...||..|+...+.|.++... + ++..-+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6889999999999999999998654 33344567888899998888766532 2 3444577788899888877
Q ss_pred hcc
Q 043265 75 CGC 77 (245)
Q Consensus 75 ~~~ 77 (245)
--.
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 554
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.28 E-value=19 Score=18.47 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=12.1
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
+|..+-.+|...|++++|...|++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3444444555555555555555544
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.85 E-value=58 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=22.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhcc
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL 114 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~ 114 (245)
.+|..+...+.......+++.+... +. .+...+|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-NS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-Cc-cchhHHHHHHHHHHHH
Confidence 4455555555566666666655442 21 3444556666666654
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.95 E-value=1e+02 Score=25.49 Aligned_cols=79 Identities=14% Similarity=-0.000 Sum_probs=57.5
Q ss_pred hHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHH-----HHHhccCCHHHHHHH
Q 043265 49 LLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIV-----DLYGRLQKIAEAREF 123 (245)
Q Consensus 49 ~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~y~~~g~~~~a~~~ 123 (245)
.++...++.+...+-+++-.+.+.+.--+.|+.+.|...|+..++. .-..|..+.+.++ ..|.-..+..+|.+.
T Consensus 196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 5556666677666777888888888888999999999999977664 3333444444444 456666788889999
Q ss_pred HHhcC
Q 043265 124 IRNMQ 128 (245)
Q Consensus 124 ~~~m~ 128 (245)
|.++.
T Consensus 275 ~~~i~ 279 (366)
T KOG2796|consen 275 FTEIL 279 (366)
T ss_pred Hhhcc
Confidence 98886
No 242
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=58.53 E-value=24 Score=17.98 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 103 HFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 103 ~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+|..+-..|.+.|+.++|...|++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777888888888888888754
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=1.1e+02 Score=25.57 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCCc---HhhHHHHHHHhcccCcHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG-VRPN---WSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~-~~p~---~~t~~~ll~~~~~~g~~~~ 83 (245)
.....|++.+|..+|.......-+ +...--.+..+|...|..+.|..+...- ..-. ...-.+-|.-..+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 445677788888888777654322 2344556667777778887777664331 1111 1111223333444444444
Q ss_pred HHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc-C---CCCcHHHHHHHHHHHHhCCC
Q 043265 84 GFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM-Q---IDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m-~---~~~~~~~~~~li~~~~~~g~ 148 (245)
...+-.....+ | |...--.+-+.|.-.|+.++|.+.+-.+ + --.|...=..||..+.-.|.
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444332 4 4444456777777777777776644333 2 11233444555555555553
No 244
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=57.89 E-value=67 Score=30.90 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=67.4
Q ss_pred HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHH
Q 043265 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVV 135 (245)
Q Consensus 57 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~ 135 (245)
.+.+-.|-...+.++. ..|.|..++|..+++.... .+.. |..|..++..+|.+.|+.++|..++++.- .-|+...
T Consensus 37 kk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eel 112 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEEL 112 (932)
T ss_pred HHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHH
Confidence 3444444444444443 3578999999999987754 3333 88999999999999999999999999885 3577666
Q ss_pred HHHHHHHHHhCCCCcccccc
Q 043265 136 WETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 136 ~~~li~~~~~~g~~~~~~~~ 155 (245)
...+.-+|.+-++...-..+
T Consensus 113 l~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777776665543333
No 245
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.62 E-value=25 Score=20.05 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGI 30 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~ 30 (245)
+-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45789999999999999999987553
No 246
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.50 E-value=75 Score=24.91 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=49.8
Q ss_pred HHhhhhh---hHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhh--cCCCcchHHHHHHHHHHhccCC
Q 043265 42 NVCMDLK---LLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRD--YDINPTLEHFLGIVDLYGRLQK 116 (245)
Q Consensus 42 ~~~~~~~---~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~y~~~g~ 116 (245)
....+.| +...+.++...+.--++..--+|..-|. ..+.+++..++-...+- .+-.+|+..+.+|.+.|-+.|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 4444454555555445555555555555 66777888777665431 1225677788899999999999
Q ss_pred HHHHH
Q 043265 117 IAEAR 121 (245)
Q Consensus 117 ~~~a~ 121 (245)
.+.|+
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98886
No 247
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=55.85 E-value=14 Score=18.60 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 043265 7 KHLCREREVKAALEVMDKLKNI 28 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~ 28 (245)
..|.+.|++++|.+.|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 4677889999999999998764
No 248
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.29 E-value=39 Score=19.55 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=26.7
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
....+.|.+.++..+++.|.+ .|+..+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQ-AGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHH-cCcccCHHHHHHHHH
Confidence 334567788888888998965 788877777776664
No 249
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.09 E-value=1.5e+02 Score=26.22 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=47.1
Q ss_pred CCCCcHhhHHHHHHHhcc--cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 60 GVRPNWSTFVGVITACGC--FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 60 ~~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
.+.|+..+-..-+.+++. .++-..|...+-.... ....| ++...+.+-++|...|+.++|...|+... ..|+
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 345555555666666554 3444445555544433 34444 56667899999999999999999999887 3444
No 250
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.09 E-value=1.3e+02 Score=25.30 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=88.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHhhhhhhHHHHHHHHh--------cCCCCcHhhHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDS-------PDIIELLNVCMDLKLLEAGKRFEN--------DGVRPNWSTFVG 70 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~~~~~~~--------~~~~p~~~t~~~ 70 (245)
-+..++.+++++|+.++.+...+|+..|. .|...+...|...|+.....+... -.-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 35678889999999999999999987665 455567777877776554443311 111223445566
Q ss_pred HHHHhcccC-cHHHHHHHHHHhhhh----cCCCcchHHHHHHHHHHhccCCHHHHHHHHH-------hcCCCCcHHHHHH
Q 043265 71 VITACGCFG-AVDEGFQHFESVTRD----YDINPTLEHFLGIVDLYGRLQKIAEAREFIR-------NMQIDASSVVWET 138 (245)
Q Consensus 71 ll~~~~~~g-~~~~a~~~~~~m~~~----~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~-------~m~~~~~~~~~~~ 138 (245)
+|..+.... .+++...+.....+. .........-.-+|..|-+.|...+|..+.. ++.-+|+..+-.-
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 776665543 466666555544331 1111122234568999999999999998664 3333555444333
Q ss_pred HH-HHHHhCCCCcccc
Q 043265 139 LE-KYAQTEPGLLLGE 153 (245)
Q Consensus 139 li-~~~~~~g~~~~~~ 153 (245)
+= .+|..-.++..++
T Consensus 170 lESKvyh~irnv~Ksk 185 (421)
T COG5159 170 LESKVYHEIRNVSKSK 185 (421)
T ss_pred hhHHHHHHHHhhhhhh
Confidence 33 4444444444333
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.87 E-value=56 Score=24.87 Aligned_cols=61 Identities=10% Similarity=0.259 Sum_probs=38.5
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+..+-.-|++.|+.+.|.+.|.++.. ....|. +..+-.+|....-.|++..+.....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4456666777777777777777777655 344443 334556666666677777666665544
No 252
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.60 E-value=20 Score=27.89 Aligned_cols=60 Identities=8% Similarity=0.042 Sum_probs=47.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCC--------------CcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDI--------------NPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--------------~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
=.+++..|-+.-++.++.++++.|.+ ..+ .|--...|.....|.++|.+|.|..++++-.
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 35777888899999999999998865 333 3334456888899999999999999998654
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.59 E-value=84 Score=23.09 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+...|......|.-|.-.++..++.+ +-+|+....-.+-.+|.+-|+..++.+++.+-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 35567788889999999999988864 23456666678899999999999999988643
No 254
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.46 E-value=84 Score=25.21 Aligned_cols=74 Identities=7% Similarity=-0.036 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhh-hcCCCcchHHHHHHHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTR-DYDINPTLEHFLGIVDL 110 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~ 110 (245)
|.+.||+.+.-..++..+++-.+. -+-|..+-..+++-+|-.|++++|..=++-... +....+...+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344555554444444444332222 123566777888999999999998765553322 12334455666666655
No 255
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.22 E-value=25 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 043265 4 SELKHLCREREVKAALEVMDKLKN 27 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~ 27 (245)
.+|.+|.+.|++++|.+...++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 368999999999999999988754
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.01 E-value=1.5e+02 Score=25.76 Aligned_cols=117 Identities=10% Similarity=-0.039 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh---------hhHHHHHHHHhcCCCCcHhh-----HHHHHHHhcc
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL---------KLLEAGKRFENDGVRPNWST-----FVGVITACGC 77 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~~~~~~~~~~~p~~~t-----~~~ll~~~~~ 77 (245)
.|+.++|.+++..+....-.+++.||..+=+.|-.. ..++.|...-..|+..+... +.+|+...+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 789999999999976666678888888887777543 24445554444444433222 3444444443
Q ss_pred cC-cHHHHHHHH---HHhhhhcCCC---cchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 78 FG-AVDEGFQHF---ESVTRDYDIN---PTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 78 ~g-~~~~a~~~~---~~m~~~~~~~---p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
.. .-.+..++- ..+..+.|.. .|-=.+.++..++.=.|+.+.|....++|-
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21 111222222 1111112222 222335567777777778887777777764
No 257
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=53.24 E-value=34 Score=29.28 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=44.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
-|-+.|.+++|+..|..-. .+.| +++++..-..+|.+...+..|+.=-...+..| ..-+.+|+|.+....++.
T Consensus 106 ~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----HHHHHHHHHHHHHHHHHh
Confidence 3667788888888876533 3445 77788877788887777776654222222222 234556665554444444
Q ss_pred HHHHh
Q 043265 87 HFESV 91 (245)
Q Consensus 87 ~~~~m 91 (245)
-..+.
T Consensus 180 ~~~EA 184 (536)
T KOG4648|consen 180 NNMEA 184 (536)
T ss_pred hHHHH
Confidence 43333
No 258
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.81 E-value=67 Score=21.46 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccc
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~ 152 (245)
+.++++...+. |+. +....+-+-.+=...|+.+.|..+...+. ..+.-|..++.+.+..|+-+.|
T Consensus 21 ~~~v~d~ll~~-~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~--rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQ-GLL-TEEDRNRIEAATENHGNESGARELLKRIV--QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhc-CCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc--cCCcHHHHHHHHHHHcCchhhh
Confidence 34555555552 322 22222222222235677777888887776 2333566777777776664443
No 259
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.37 E-value=64 Score=21.11 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=33.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHhhhhhhHHHHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFL-D-SPDIIELLNVCMDLKLLEAGKR 55 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p-~-~~t~~~ll~~~~~~~~~~~~~~ 55 (245)
+.-| ..+.-++|+..|....++-..| + -.++..++.+|+..|.++++.+
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 5667888888888877654433 3 2567778888888887776654
No 260
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.70 E-value=2e+02 Score=26.34 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 61 VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 61 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
+.||+++--.+| |--.|.++.|...|+.... +.| |-.+||-|=-.++...+.++|..-+.+.. ++|+
T Consensus 428 ~DpdvQ~~LGVL--y~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 428 IDPDVQSGLGVL--YNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred CChhHHhhhHHH--HhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 444444444444 5555666666666665532 344 34556666666666666666666665543 4554
No 261
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=50.14 E-value=1.7e+02 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 043265 9 LCREREVKAALEVMDKLKNIG 29 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g 29 (245)
+.+.|.+++|..=|+....+.
T Consensus 116 llK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC
Confidence 457788888888888877653
No 262
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.08 E-value=85 Score=21.75 Aligned_cols=57 Identities=9% Similarity=-0.101 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHH
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLE 140 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li 140 (245)
.++|.-+-+.+... +-. ...+--+=+..+.+.|++++|..+.+.+. -||...|-+|-
T Consensus 21 HqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALc 77 (115)
T TIGR02508 21 HQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALC 77 (115)
T ss_pred HHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHH
Confidence 45555555555431 211 11111223445567788888888888776 78888777664
No 263
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=48.61 E-value=2.5e+02 Score=26.81 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=68.1
Q ss_pred HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CC--CcH
Q 043265 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-ID--ASS 133 (245)
Q Consensus 57 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~--~~~ 133 (245)
....+.-|...|-.+--+..+.|+++.+-+.|++... +..-....|..+-..|.-+|.-..|..+.++-. .. |+.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 4445667899999999999999999999999998764 344466789999999999999889999887653 34 544
Q ss_pred HHHHHHH-HHH-HhCCCCcccc
Q 043265 134 VVWETLE-KYA-QTEPGLLLGE 153 (245)
Q Consensus 134 ~~~~~li-~~~-~~~g~~~~~~ 153 (245)
.+---|. ..| .+.+.++.+.
T Consensus 393 ~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHH
Confidence 4333333 333 3334444443
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=48.37 E-value=2e+02 Score=25.70 Aligned_cols=145 Identities=13% Similarity=0.005 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCH-----HHHHHHHHHhhh----hhhHHHHHHHHhcC--CCCcHhhHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKN-IGIFLDS-----PDIIELLNVCMD----LKLLEAGKRFENDG--VRPNWSTFVGV 71 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~-~g~~p~~-----~t~~~ll~~~~~----~~~~~~~~~~~~~~--~~p~~~t~~~l 71 (245)
.++...+=.|+-+.+++++.+-.+ .|+.-.. -+|..++..++. ...++.++++.... --|+..-|...
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 455666677888888888877654 3454332 234444444433 24566677765543 34887777555
Q ss_pred HH-HhcccCcHHHHHHHHHHhhhh-cCC--CcchHHHHHHHHHHhccCCHHHHHHHHHhcCC--CCcHHHHHHHHHHH-H
Q 043265 72 IT-ACGCFGAVDEGFQHFESVTRD-YDI--NPTLEHFLGIVDLYGRLQKIAEAREFIRNMQI--DASSVVWETLEKYA-Q 144 (245)
Q Consensus 72 l~-~~~~~g~~~~a~~~~~~m~~~-~~~--~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~--~~~~~~~~~li~~~-~ 144 (245)
-. .+...|++++|.+.|+..... ..+ -+....| -+...+.-.+++++|.+.|..+.. .-+..+|.-+..+| .
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~-El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF-ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH-HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 43 345588999999999964321 111 1123333 456667888899999999999861 23345566666444 3
Q ss_pred hCCCC
Q 043265 145 TEPGL 149 (245)
Q Consensus 145 ~~g~~ 149 (245)
..|+.
T Consensus 352 ~l~~~ 356 (468)
T PF10300_consen 352 MLGRE 356 (468)
T ss_pred hhccc
Confidence 34544
No 265
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=48.25 E-value=1.4e+02 Score=23.92 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=78.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhhhhhhHHHHHHH----Hhc-CCCCcH---------------
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDI--IELLNVCMDLKLLEAGKRF----END-GVRPNW--------------- 65 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~~~~~----~~~-~~~p~~--------------- 65 (245)
.+.+.|++++|.+.|+++....-.+..... -.+..++-+.+.++.|... .+. .-.|+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 456789999999999999875433322221 2334555666666655432 111 111111
Q ss_pred ------------------------hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHH
Q 043265 66 ------------------------STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 66 ------------------------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~ 121 (245)
.++..+|.-|=...-..+|...+..+... =...--.+-.-|-+.|.+.-|.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHH
Confidence 22334444444444444444433333221 0111113456699999998888
Q ss_pred HHHHhcC-----CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 122 EFIRNMQ-----IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 122 ~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.=|+.+- .+......-.|+.+|...|..+.+....
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8777663 1222344456668898888887766543
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=48.21 E-value=73 Score=25.92 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=47.5
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
|-..-|+--+.. -+.|++++|.+.|+.+..++...|-. .+--.++.++-+.++.++|...+++.
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 334455555543 46899999999999998877776643 44556778888999999999888766
No 267
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.20 E-value=59 Score=21.42 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcc
Q 043265 85 FQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
..+++.+.++ | +.|..-.-...+...+.+.+.++.+..+ ..+...|.++..|....|....
T Consensus 19 ~~v~~~L~~~-~----Vlt~~~~e~I~~~~tr~~q~~~LLd~L~-~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSR-G----VFTPDMIEEIQAAGSRRDQARQLLIDLE-TRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhc-C----CCCHHHHHHHHcCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCchHH
Confidence 3455555553 3 3333444444455566778888888887 6677788888888777665433
No 268
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.49 E-value=31 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKN 27 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~ 27 (245)
|..++.-|-..|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67888999999999999999999876
No 269
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.98 E-value=89 Score=20.89 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=22.7
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHH
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~ 121 (245)
...|+.+.|.+++..+. . ...-|..+++++-..|.-+-|.
T Consensus 47 ~~~g~~~~ar~LL~~L~-r-----g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 47 ENHGNESGARELLKRIV-Q-----KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred cccCcHHHHHHHHHHhc-c-----CCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666666664 2 2224566666666666555443
No 270
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=44.73 E-value=2.9e+02 Score=26.42 Aligned_cols=64 Identities=6% Similarity=0.072 Sum_probs=50.4
Q ss_pred cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 59 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
.+..|+..-|.++= |+-.++++.|.+...+..+ .+-.-+...|.-|.-.+.-.+++.+|+.+.+
T Consensus 474 d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45667777777766 5567889999998887765 4555688889999999999999999999775
No 271
>PLN02789 farnesyltranstransferase
Probab=43.55 E-value=2e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHH
Q 043265 16 KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEA 52 (245)
Q Consensus 16 ~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 52 (245)
++++.+++++.+.+- -|...|+-.-.++.+.|.++.
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHH
Confidence 344444444443322 133444444444444443333
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=43.30 E-value=45 Score=16.72 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI 28 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~ 28 (245)
.+=..|.+.|++++|.+.|++..+.
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3446788899999999999987653
No 273
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.96 E-value=1.3e+02 Score=21.87 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=53.6
Q ss_pred hcCCCCCHHHHHHHHHHhhhhhhHHHHH------HHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 043265 27 NIGIFLDSPDIIELLNVCMDLKLLEAGK------RFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT 100 (245)
Q Consensus 27 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~------~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 100 (245)
++|.+ +..-|+.=-.-|......+..+ .+....+.|++...-+-|.||.+.+++..|.++|+-++-+ +.+-
T Consensus 41 ~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~ 117 (149)
T KOG4077|consen 41 EHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQ 117 (149)
T ss_pred hcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccH
Confidence 44444 4444444444454433333321 2355678899999999999999999999999999988653 4444
Q ss_pred hHHHHHHHHH
Q 043265 101 LEHFLGIVDL 110 (245)
Q Consensus 101 ~~~~~~li~~ 110 (245)
-..|-.+++-
T Consensus 118 k~~Y~y~v~e 127 (149)
T KOG4077|consen 118 KQVYPYYVKE 127 (149)
T ss_pred HHHHHHHHHH
Confidence 4467777664
No 274
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.89 E-value=1.3e+02 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhc------CCCCcHhhHHHHHHHhcccCcH
Q 043265 39 ELLNVCMDLKLLEAGKRFEND------GVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 39 ~ll~~~~~~~~~~~~~~~~~~------~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
+|+.+|..+|.+..+.++.++ |=+.=...||.-|....+.|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 455555555555555544332 2222233445555555555543
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=42.63 E-value=1.7e+02 Score=23.04 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=56.0
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhCCC
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ------IDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~------~~~~~~~~~~li~~~~~~g~ 148 (245)
..+.|+- .|.+.|-.+.. .+..-|+...-.|..-|.+ .+.+++..++.+.- -.+|+..+.+|...+...|+
T Consensus 117 Wsr~~d~-~A~~~fL~~E~-~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGDQ-EALRRFLQLEG-TPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCcH-HHHHHHHHHcC-CCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4566665 67777777876 4555677778788888874 57888888776541 26788999999999999988
Q ss_pred Cccc
Q 043265 149 LLLG 152 (245)
Q Consensus 149 ~~~~ 152 (245)
.+.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 8765
No 276
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.59 E-value=54 Score=22.63 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLE 51 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 51 (245)
.++......+..-.|.++++.+++.+..++..|.--.|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456667777777789999999999888788888777788888777544
No 277
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.25 E-value=73 Score=21.27 Aligned_cols=58 Identities=3% Similarity=0.005 Sum_probs=35.6
Q ss_pred HHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 85 FQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
..+++.+.++ |+. |-.-.-...+...+.+.+.++++.++ ..+...|.++..++...+.
T Consensus 23 ~~v~~~L~~~-gvl----t~~~~~~I~~~~t~~~k~~~Lld~L~-~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQK-DIL----TDSMAESIMAKPTSFSQNVALLNLLP-KRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHc-CCC----CHHHHHHHHcCCCcHHHHHHHHHHHH-HhChhHHHHHHHHHHhcCh
Confidence 3455555553 333 32333334445556788888888887 6777788888888866543
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=42.11 E-value=2e+02 Score=23.96 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh--h--------hhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccC--
Q 043265 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVCMD--L--------KLLEAGKRFENDG---VRPNWSTFVGVITACGCFG-- 79 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~--~--------~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g-- 79 (245)
+++...+++.|.+.|++-+..+|-+-.-.... . .+.+.++.|++.- ..++-.++.++|..-...-
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 45667777778888887776666653222222 2 2333344454432 3456667777766522211
Q ss_pred cHHHHHHHHHHhhhhcCCCcc
Q 043265 80 AVDEGFQHFESVTRDYDINPT 100 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~ 100 (245)
..+.++.+|+.+.. .|+..+
T Consensus 158 l~~~~E~~Y~~L~~-~~f~kg 177 (297)
T PF13170_consen 158 LAERMEQCYQKLAD-AGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHH-hCCCCC
Confidence 24556667776655 566654
No 279
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=41.40 E-value=77 Score=20.06 Aligned_cols=41 Identities=7% Similarity=-0.037 Sum_probs=31.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK 48 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~ 48 (245)
...-.|+.+.+.+++++..+.|+.|..+....+..+..+.|
T Consensus 10 ~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 10 DALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34556888899999999998888888888777887776665
No 280
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=1.8e+02 Score=26.32 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=52.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhccc-------Cc
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCF-------GA 80 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~-------g~ 80 (245)
.+-+.|++..|++.|+++..+. +-|...|+.---+|.+.|.+..+..=-+..+.-|+. .+.+|.|. .+
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~----~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN----FIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHH
Confidence 4567899999999999998876 446888999888888888777665432222222322 23334443 36
Q ss_pred HHHHHHHHHHhh
Q 043265 81 VDEGFQHFESVT 92 (245)
Q Consensus 81 ~~~a~~~~~~m~ 92 (245)
+++|.+.|.+-.
T Consensus 442 ydkAleay~eal 453 (539)
T KOG0548|consen 442 YDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHH
Confidence 666777776443
No 281
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=40.95 E-value=48 Score=21.33 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=39.4
Q ss_pred hhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchH---HHHHHHHHHhccCCHHHH
Q 043265 44 CMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLE---HFLGIVDLYGRLQKIAEA 120 (245)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~y~~~g~~~~a 120 (245)
.++.|.++.++.+.+.+..++. -...+...+..|+.+-+..+++ .|..++.. -++.|.. -+..|+.+-+
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~-A~~~~~~~~~ 75 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLE-----NGADINSQDKNGNTALHY-AAENGNLEIV 75 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHH-----TTTCTT-BSTTSSBHHHH-HHHTTHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHH-----hcccccccCCCCCCHHHH-HHHcCCHHHH
Confidence 4566777777777777766665 1124444456667655555554 34444332 2333333 3556666655
Q ss_pred HHHHHh
Q 043265 121 REFIRN 126 (245)
Q Consensus 121 ~~~~~~ 126 (245)
.-+.+.
T Consensus 76 ~~Ll~~ 81 (89)
T PF12796_consen 76 KLLLEH 81 (89)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 555443
No 282
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=39.92 E-value=1.7e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELL 41 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll 41 (245)
.+++.|.++|.+++|.++....++-.. .|+...+..+.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~ 149 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIA 149 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHH
Confidence 578999999999999999888764333 36655555443
No 283
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.39 E-value=57 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCCCcHhh-HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 043265 60 GVRPNWST-FVGVITACGCFGAVDEGFQHFESVTRDYDINP 99 (245)
Q Consensus 60 ~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 99 (245)
.+.||..+ |+.-|+.-.+.|++++|+.++++.++ .|+.-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~ 290 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAER-LGSTS 290 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCch
Confidence 45566555 57999999999999999999999977 78764
No 284
>PRK15331 chaperone protein SicA; Provisional
Probab=39.38 E-value=1.7e+02 Score=22.17 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhcccCcHHHHH
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDI-IELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
-+.|++++|..+|.-+--.+. ...-| ..|-.+|-..+.++.|..+-... + .-|+..+-..=.++-..|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 355677777777776655332 22223 23323333335555554431110 0 112222333444555666666666
Q ss_pred HHHHHhhh
Q 043265 86 QHFESVTR 93 (245)
Q Consensus 86 ~~~~~m~~ 93 (245)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655543
No 285
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.33 E-value=13 Score=26.96 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=24.6
Q ss_pred cccccCchhhHHHHhhhhcCceeeecc
Q 043265 216 NLRICGECHNFIKKLSSIENREIIVRD 242 (245)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 242 (245)
.+++.|+-.+|.++|.+|-++|..++|
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 478889999999999999999999877
No 286
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.32 E-value=61 Score=21.35 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGI 30 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~ 30 (245)
++++.+.+|.--++|+++++-|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 578889999999999999999999884
No 287
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.26 E-value=1.3e+02 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 103 HFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 103 ~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-|..|+..|...|.-++|.+++.+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHh
Confidence 35667777777777777777766554
No 288
>PHA02884 ankyrin repeat protein; Provisional
Probab=39.02 E-value=65 Score=26.94 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=42.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSP-------DIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGV 71 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~l 71 (245)
+++++.+.++.|+.+-+ +.+.+.|..|+.. -.+.+..| ++.+..+.++-+.+.|..+|... -.+.
T Consensus 33 ~~~lL~~A~~~~~~eiv----k~LL~~GAdiN~~~~~sd~~g~TpLh~A-a~~~~~eivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 33 IANILYSSIKFHYTDII----DAILKLGADPEAPFPLSENSKTNPLIYA-IDCDNDDAAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred CCHHHHHHHHcCCHHHH----HHHHHCCCCccccCcccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence 45666666666665544 3344555544431 22333333 45566666666777776666521 1233
Q ss_pred HHHhcccCcHHHHHHHH
Q 043265 72 ITACGCFGAVDEGFQHF 88 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~ 88 (245)
+...+..|..+-+.-++
T Consensus 108 Lh~Aa~~~~~eivklLL 124 (300)
T PHA02884 108 LYISVLHGCLKCLEILL 124 (300)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444455555444443
No 289
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.86 E-value=2.4e+02 Score=23.90 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHhccCCHHHHHHH------HHhcC------------CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 100 TLEHFLGIVDLYGRLQKIAEAREF------IRNMQ------------IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 100 ~~~~~~~li~~y~~~g~~~~a~~~------~~~m~------------~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.+.+|.-|+.+++..|+.+-.+-+ ++++. .+.|+.+=.+++.-|.. |....++..+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~-gh~~KGk~~F 393 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKE-GHVAKGKSVF 393 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh-ccccccHHHH
Confidence 455789999999999988765432 12221 24455555566666644 4444444443
No 290
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.69 E-value=2.2e+02 Score=23.40 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhhhh-hhHHHHHHHHhcCCCCcHhhHHHHHHHhcccC
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDS----PDIIELLNVCMDL-KLLEAGKRFENDGVRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~----~t~~~ll~~~~~~-~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g 79 (245)
+.-+..-.|+.+-|...++.+..+= |.. -....++.+-+.- ++.+-...+.+.. +-|.++|--=|-.....|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3445556777888888888876542 332 2233334443322 2333333344333 446666655555555556
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH-HHHHHHH
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS-VVWETLE 140 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~-~~~~~li 140 (245)
+--+|.+-+....+ .|..|...|.-+-..|..-|+++.|--.++++- ++|-. ..+..+-
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 55566666655544 366688888888888888888888888888775 45543 3344444
No 291
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.42 E-value=46 Score=15.39 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=19.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKN 27 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~ 27 (245)
|..+-..+...|++++|...|....+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44556677888889999988887654
No 292
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=2.5e+02 Score=24.50 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLK 26 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~ 26 (245)
.|.|.|++..|..-|++..
T Consensus 217 ~~fK~gk~~~A~~~Yerav 235 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAV 235 (397)
T ss_pred HHHhhchHHHHHHHHHHHH
Confidence 5677888888888877743
No 293
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.86 E-value=58 Score=22.94 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVC 44 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~ 44 (245)
++|+.+.+|...++|+++++-|.++|- .+...-+.|-...
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 578899999999999999999999984 3433334343333
No 294
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.78 E-value=99 Score=28.21 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=65.3
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccc
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~ 153 (245)
.....+.+..++|-++....+-++|..+++.|=-.|--.|.++.|.+.|+.-- .+| |..+||-|=...+...+-+.|.
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHH
Confidence 33445667778888887667756677778888888888999999999998663 555 5788999877777766666665
Q ss_pred ccc--cccccccc
Q 043265 154 PSS--SLRLSNKK 164 (245)
Q Consensus 154 ~~~--~~~~~~~~ 164 (245)
... ++++.|.-
T Consensus 485 sAY~rALqLqP~y 497 (579)
T KOG1125|consen 485 SAYNRALQLQPGY 497 (579)
T ss_pred HHHHHHHhcCCCe
Confidence 555 77775544
No 295
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=37.65 E-value=34 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=21.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 043265 11 REREVKAALEVMDKLKNIGIFLDSPDII 38 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~p~~~t~~ 38 (245)
=.|+.++|.++++.++..|++|-...|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3688999999999999999988776654
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.57 E-value=3e+02 Score=24.53 Aligned_cols=101 Identities=11% Similarity=0.152 Sum_probs=60.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
+.+++.+-+.|..+.|+++-.+-..+ ....-+.|+++.|.++.+. .++...|..|-....+.|+++
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~--~~~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE--LDDPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC--CSTHHHHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCHH
Confidence 56677777888888887765543211 2223345667777665333 236667777777777888888
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-|++.|.... -|..|+-.|.-.|+.+.-.++-+.-
T Consensus 365 lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 365 LAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 8877776553 2456666777777766666655443
No 297
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.27 E-value=53 Score=25.15 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 59 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
....|+..+|..++.++...|+.++|.+..+++..
T Consensus 138 l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 138 LRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999998854
No 298
>PLN02789 farnesyltranstransferase
Probab=37.00 E-value=2.6e+02 Score=23.62 Aligned_cols=137 Identities=9% Similarity=0.028 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhh-hHHHHHHHHhc---CCCCcHhhHHHHHHHhccc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLK-LLEAGKRFEND---GVRPNWSTFVGVITACGCF 78 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~ 78 (245)
.+-..+...+..++|+.+..+....+ |+ ...|+.-=..+...| .++++...... .-+-+..+|+.---.+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 34455666778999999999988753 33 344543333333333 34444333221 2233555676554444455
Q ss_pred Cc--HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHh
Q 043265 79 GA--VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQT 145 (245)
Q Consensus 79 g~--~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~ 145 (245)
|. .+++..+++.+.+ ..| +..+|+-.-.++.+.|+++++.+.++++- . ..|...|+-.--....
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 54 3567777777754 334 56788888889999999999999999884 2 2345666655544433
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=36.84 E-value=2.3e+02 Score=23.11 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-------------------hHHHHHH-HHhcCCCCcH----
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-------------------LLEAGKR-FENDGVRPNW---- 65 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-------------------~~~~~~~-~~~~~~~p~~---- 65 (245)
.+.|+.+.|...|.+.+..-...++...-.|-+.|...| +++...+ -......|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Q ss_pred -hhHHHHHHHhcccC---cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHH
Q 043265 66 -STFVGVITACGCFG---AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETL 139 (245)
Q Consensus 66 -~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~l 139 (245)
.+...++.+|-..+ ..++|.++++.+..++|-.|. ++-.-+....+.++.+++.+++.+|- +.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Q ss_pred HHHHHh
Q 043265 140 EKYAQT 145 (245)
Q Consensus 140 i~~~~~ 145 (245)
+..+..
T Consensus 162 l~~i~~ 167 (278)
T PF08631_consen 162 LHHIKQ 167 (278)
T ss_pred HHHHHH
No 300
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.44 E-value=3.2e+02 Score=24.56 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=20.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHh
Q 043265 3 NSELKHLCREREVKAALEVMDKLKN 27 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~ 27 (245)
.++|+-|--.|+..+..+.++++-.
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHcCC
Confidence 5688889999999888888887643
No 301
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.43 E-value=2.4e+02 Score=23.19 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHH---hcC-CCCCHH-HHHHHHHHhhhhhhHHHHHHHHh---cCCCCcH----hhHHHHHHHhcccC
Q 043265 12 EREVKAALEVMDKLK---NIG-IFLDSP-DIIELLNVCMDLKLLEAGKRFEN---DGVRPNW----STFVGVITACGCFG 79 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~---~~g-~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~---~~~~p~~----~t~~~ll~~~~~~g 79 (245)
..+.++..+++.++. ..| ..|+.. .|--++-+--..|..+.|....+ ..+ |+. .-+..++ -..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~l---Ea~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLL---EATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHH---HHhh
Confidence 445667777776664 234 556543 33334444444455555544321 122 222 1222222 2356
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-C-CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-Q-IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~-~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+.++|.++++.+.++- .-|.++|--=|-+.-..|+--+|.+-+.+. . +-.|...|.-+-.-|...|+++.|-...
T Consensus 101 ~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred chhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 6777777777776541 224444443233333333333444433322 1 3456667777777776666666654433
No 302
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.30 E-value=1.3e+02 Score=25.90 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHhhhhhhHHHHHHHHhcCCCCcHh--hHHHHHHHhcccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPD--IIELLNVCMDLKLLEAGKRFENDGVRPNWS--TFVGVITACGCFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~--t~~~ll~~~~~~g~ 80 (245)
-|...++.|+.+-+..++ +.|..|+... ..+.+...++.|..+.++.+.+.|..|+.. ...+.+...+..|+
T Consensus 5 ~L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 5 ALCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 445556667776654444 4566554322 233344445667788777777777766543 12233444456677
Q ss_pred HHHHHHHHH
Q 043265 81 VDEGFQHFE 89 (245)
Q Consensus 81 ~~~a~~~~~ 89 (245)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 776666664
No 303
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.66 E-value=52 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 043265 13 REVKAALEVMDKLKNIGIFL 32 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p 32 (245)
-+++.|...|.+++..|--|
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 39 WDYERALKNFTELKSEGSIP 58 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 47999999999999866444
No 304
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=35.52 E-value=1.1e+02 Score=21.45 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHH-hcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhh
Q 043265 15 VKAALEVMDKLK-NIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVT 92 (245)
Q Consensus 15 ~~~A~~lf~~m~-~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 92 (245)
.++|.+.+.+++ ..|+.| |+..=-++.........++....-...|+.-|..||. |+.++....+-.+.
T Consensus 5 S~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll~q~ 75 (113)
T PF08870_consen 5 SKKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDIKDDSGLELNWKTFT---------GEYDDIYEALLKQR 75 (113)
T ss_pred CHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCccCCCCCeEEeeeeec---------CchHHHHHHHHHHH
Confidence 356778888886 568888 5444334433333333332111112335555555554 66666555554443
Q ss_pred hhcCCCcchHHHHHHHHHHhccC
Q 043265 93 RDYDINPTLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 93 ~~~~~~p~~~~~~~li~~y~~~g 115 (245)
.|...|...+...+.+....|
T Consensus 76 --~g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 76 --YGPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred --hCCCCCHHHHHHHHHHHHHHh
Confidence 356667777766666655444
No 305
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.51 E-value=1.5e+02 Score=24.38 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=33.3
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDY---DINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-|+.-+..+ +.|++..|..-|..-.+.+ .+.|+..-| |-..|...|+.++|-.+|..+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHH
Confidence 466666544 3444677777666655432 223444433 566666677777777766555
No 306
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=35.25 E-value=2.7e+02 Score=23.28 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhh-----hhHHHHHHH--HhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 15 VKAALEVMDKLKN-IGIFLDSPDIIELLNVCMDL-----KLLEAGKRF--ENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 15 ~~~A~~lf~~m~~-~g~~p~~~t~~~ll~~~~~~-----~~~~~~~~~--~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
+.+|+++|+...- ..+--|......+++..... .++-++... ...|-.++..+...+|..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666664322 34555667777777776552 122222222 223466777777777777777777777777
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+++......+..-|...|..+|+.-.++|+.+-..++..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7765544223445667777777777777777776666654
No 307
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.89 E-value=3.5e+02 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHH
Q 043265 106 GIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLE 140 (245)
Q Consensus 106 ~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li 140 (245)
.+++-+-+.|-.++|++++.... . +|+...|.-||
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~mi 501 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMI 501 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45555555555555555555443 1 33444444444
No 308
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.37 E-value=61 Score=22.63 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLE 51 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 51 (245)
+++......+..-.|.++++.|...|...+..|.=--|+.+.+.|-+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 466777777777789999999999988888877666677777776444
No 309
>PRK11906 transcriptional regulator; Provisional
Probab=33.53 E-value=3.5e+02 Score=24.19 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHH-hcCCCCCH-HHHHHHHHHhhhh---------hhHHHHHHHHhcCC--CC-cHhhHHHHHHHhcccC
Q 043265 14 EVKAALEVMDKLK-NIGIFLDS-PDIIELLNVCMDL---------KLLEAGKRFENDGV--RP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 14 ~~~~A~~lf~~m~-~~g~~p~~-~t~~~ll~~~~~~---------~~~~~~~~~~~~~~--~p-~~~t~~~ll~~~~~~g 79 (245)
..++|+.+|.+.. ...+.|+- ..|..+-.++... .+...+.+.....+ .| |.+.-..+=.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3568889999987 33455653 3333333332221 23333444433322 22 4555555544456666
Q ss_pred cHHHHHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHh-cCCCCc
Q 043265 80 AVDEGFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRN-MQIDAS 132 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~-m~~~~~ 132 (245)
+++.|...|++... +.||. .+|-..-....-+|+.++|.+.+++ ++..|.
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 79999999997744 55653 2233333334446999999999988 665664
No 310
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=31.87 E-value=1.3e+02 Score=27.16 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHH--HHHHHhhh-------------hcC
Q 043265 32 LDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGF--QHFESVTR-------------DYD 96 (245)
Q Consensus 32 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~--~~~~~m~~-------------~~~ 96 (245)
.|++.|.-.++.|.+.--.+....+.+.|+.||-.. -.-|++...+.... ++...+.+ +.|
T Consensus 264 SdPiiFGhaVk~fyk~~f~k~~~~f~~lGvn~nNGl----~~l~skiesl~~~~r~eI~~~~~~~~a~~p~laMVdS~kG 339 (744)
T COG2838 264 SDPIIFGHAVKVFYKDVFAKHGDLFDALGVNVNNGL----SDLYSKIESLPASQRAEIEADIHAVYAHRPDLAMVDSDKG 339 (744)
T ss_pred cCceehhHHHHHHHHHHHHHHHHHHHHhCCCccccH----HHHHHHHhcCChhhHHHHHHHHHHHHhcCCcceeeecccC
Confidence 466777777888776544444556677899888443 23333333332222 22222211 122
Q ss_pred CC----c-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHhCCCCcc
Q 043265 97 IN----P-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS---SVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 97 ~~----p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~---~~~~~~li~~~~~~g~~~~ 151 (245)
|. | |+.+=.+|=-+....|++-....-.+.-+ +-|| ..+|..+|..|..+|-++-
T Consensus 340 ItNlhvPSDVIVDASMPAMir~sg~mw~~dgk~kDTkAviPdstya~iYq~vI~~ck~nGafdP 403 (744)
T COG2838 340 ITNLHVPSDVIVDASMPAMIRNSGRMWGKDGKLKDTKAVIPDSTYAGIYQEVIDFCKTNGAFDP 403 (744)
T ss_pred cccccCCcceeeeCCcHHHHhccccccCCccccccccccCcchhHHHHHHHHHHHHHhcCCcCc
Confidence 21 2 22222222222222333222111111111 3555 4789999999999998776
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.43 E-value=1e+02 Score=22.93 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=34.4
Q ss_pred HcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC-CCcHhhHHHHHHHhcccC
Q 043265 11 REREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLKLLEAGKRFENDGV-RPNWSTFVGVITACGCFG 79 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~p~~~t~~~ll~~~~~~g 79 (245)
..++.++++.+++.|.---- .|...+|-..+ +...|+++++.++.+.-. .+....|..-|.++|-..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 36777788888777753211 12334444443 345567777766544321 122224555555555433
No 312
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=31.39 E-value=1.5e+02 Score=20.60 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHH-hcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhh
Q 043265 15 VKAALEVMDKLK-NIGIFL-DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVT 92 (245)
Q Consensus 15 ~~~A~~lf~~m~-~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 92 (245)
.++|.+.+.+++ ..|+.| |...=-++.........+.....-...|+..|..||. |..++....+-...
T Consensus 4 S~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d~~~E~~~~T~~---------Ge~~~i~~alLkq~ 74 (105)
T TIGR03184 4 SQTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLDGNVEIDWYTFA---------GEYGDIYLALLKQR 74 (105)
T ss_pred cHHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCCCCeEEEeeeec---------CchHHHHHHHHHHH
Confidence 357888888887 468888 4433333333332222222111112334455555544 66555444443322
Q ss_pred h-hcCCCcchHHHHHHHHHHhccC
Q 043265 93 R-DYDINPTLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 93 ~-~~~~~p~~~~~~~li~~y~~~g 115 (245)
. ..+..+|-..+...+.+....|
T Consensus 75 ~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 75 CVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHccCCCCCHHHHHHHHHHHHHHH
Confidence 0 1355566666665555554443
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.38 E-value=2.2e+02 Score=28.72 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCcch--HHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYDINPTL--EHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+.+|..+|++.+|..+..++... -|. .+-..|+.-+...|+.-+|-++..+-
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 44455555555555555544321 111 11234555555555554444444433
No 314
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.10 E-value=3.5e+02 Score=23.34 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=45.1
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH---hcCCCCc--HHHHHHHH-HHHH
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR---NMQIDAS--SVVWETLE-KYAQ 144 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~---~m~~~~~--~~~~~~li-~~~~ 144 (245)
+-.+.|++.+|.+.|..+.++..+..-......||.++....-..+...++- ++. .|. ..+|++-+ .+-.
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis-lPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS-LPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CcchHHHHHHHHHHHHHH
Confidence 3345899999999999987765544444555677777776665666666554 444 343 46677655 4433
No 315
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.73 E-value=1.2e+02 Score=24.46 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhCCCCcc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ--------IDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~--------~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+..|.+.|..... ..--....--|-.-|.+.|++++|.++|+.+. ..+...+-..+..++...|+.+.
T Consensus 161 L~~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4455555553322 22234444567888888888888888888773 11223334444455555666554
No 316
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.12 E-value=1.2e+02 Score=26.11 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHhcCCCCc
Q 043265 47 LKLLEAGKRFENDGVRPN 64 (245)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~ 64 (245)
.|..+.++.+.+.|..|+
T Consensus 112 ~~~~~iv~~Ll~~gad~~ 129 (413)
T PHA02875 112 LKKLDIMKLLIARGADPD 129 (413)
T ss_pred hCCHHHHHHHHhCCCCCC
Confidence 344444455555555443
No 317
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.51 E-value=55 Score=23.86 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=17.1
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHH
Q 043265 78 FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDL 110 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 110 (245)
.|.-.+|-.+|..|.+ .|-.|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLE-RGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHh-CCCCCc--cHHHHHHH
Confidence 4444555666666665 466666 45555543
No 318
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.14 E-value=1.1e+02 Score=22.46 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLL 50 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 50 (245)
.++..+.+.+..-.|.++++.+++.+...+..|.=-.|+.+...|-+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 35566666666667777777777766655555555555555555533
No 319
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.89 E-value=1.6e+02 Score=23.17 Aligned_cols=29 Identities=7% Similarity=-0.039 Sum_probs=24.9
Q ss_pred CCCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 61 VRPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 61 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
..+--+..|.....+.+.|++|.|.+++.
T Consensus 177 ~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 177 LASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred cCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 44566778888999999999999999997
No 320
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=28.55 E-value=2.6e+02 Score=21.00 Aligned_cols=79 Identities=6% Similarity=-0.082 Sum_probs=38.6
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCcc
Q 043265 75 CGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~ 151 (245)
+...|++++|+.+|+.... +.|. ..-|-.|=-++-..|++++|...|...- +.|| +..+--+=.++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 3455666666666665533 2332 2233345555555666666666665443 2332 2222222333444555555
Q ss_pred ccccc
Q 043265 152 GEPSS 156 (245)
Q Consensus 152 ~~~~~ 156 (245)
|+..+
T Consensus 122 A~~aF 126 (157)
T PRK15363 122 AIKAL 126 (157)
T ss_pred HHHHH
Confidence 55544
No 321
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=28.27 E-value=3.1e+02 Score=24.86 Aligned_cols=122 Identities=8% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 043265 19 LEVMDKLKNIGIFLDS---PDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDY 95 (245)
Q Consensus 19 ~~lf~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 95 (245)
.-|...+.++++-|+. .+-.+++.+..-.-..++..++...-..-+...+..=+. +-+....+++. .
T Consensus 190 ~GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~-----n~~~~ikr~~~-----~ 259 (543)
T KOG2214|consen 190 IGVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLG-----NLLTIIKRYFT-----Q 259 (543)
T ss_pred HHHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcch-----hHHHHHHHHHh-----c
Q ss_pred CCCcchHHHHHHHHHHhccCCHHHHHH--------------------HHHhcCCCCcHHHHHHHHHHHHhCCCCcc
Q 043265 96 DINPTLEHFLGIVDLYGRLQKIAEARE--------------------FIRNMQIDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 96 ~~~p~~~~~~~li~~y~~~g~~~~a~~--------------------~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
|..-|...+...+.-+...==++||++ +++... .||+.+|.++...|.--|-.+.
T Consensus 260 G~~~Di~~l~~~~~~~~~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylT-aPnVLIWSAV~aScs~pgif~~ 334 (543)
T KOG2214|consen 260 GALFDISHLACVMKKRLGNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLT-APNVLIWSAVCASCSVPGIFES 334 (543)
T ss_pred chHHHHHHHHHHHHHHhcchhHHHHHHhhCceEEEEECccccCCChhHhhccC-CCceehhHHHHHhcccccccCc
No 322
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.07 E-value=88 Score=23.60 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=35.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhhh---hhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 23 DKLKNIGIFLDSPDIIELLNVCMDL---KLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 23 ~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
+.++..|++++..-..++--..... .+-+.+.++.+.+..++..|.=-.|..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3356678776654442222222222 25555667777777777777666667777777663
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.57 E-value=3.8e+02 Score=22.66 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCC
Q 043265 71 VITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQK 116 (245)
Q Consensus 71 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~ 116 (245)
.-++|..+|.+.+|.++.+.... .-| +...|-.|+..|+..|+
T Consensus 285 va~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhcc
Confidence 33444555555555555443322 111 33334455555555554
No 324
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.50 E-value=85 Score=15.18 Aligned_cols=29 Identities=3% Similarity=-0.025 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043265 13 REVKAALEVMDKLKNIGIFLDSPDIIELLN 42 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~ 42 (245)
|+.+.|.++|+++..... -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 567889999999876532 35566665543
No 325
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.48 E-value=3.7e+02 Score=22.49 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHHHHhhhhhhHHHHHHH------HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHh
Q 043265 39 ELLNVCMDLKLLEAGKRF------ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYG 112 (245)
Q Consensus 39 ~ll~~~~~~~~~~~~~~~------~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~ 112 (245)
.=|.+++..+.|.++..- .-..++|...-..+++ |++.+.+..+.++-..=..+ .-.-+...|.++...|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHH
Confidence 346777777777776442 2346778877777777 78888888777766544332 11123334666655554
Q ss_pred -----ccCCHHHHHHHHHhcC
Q 043265 113 -----RLQKIAEAREFIRNMQ 128 (245)
Q Consensus 113 -----~~g~~~~a~~~~~~m~ 128 (245)
=.|.+++|+++...-.
T Consensus 165 l~VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHHHhccccHHHHHHHHhcCC
Confidence 4799999999885554
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=27.39 E-value=2.8e+02 Score=21.03 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=57.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh--hhHHHHHHHHhcCCCCcHhhHHHHHHHhcccC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL--KLLEAGKRFENDGVRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g 79 (245)
|..+|..+.+.|.+... ..+...++-||.......+-.+... .....+..|.++ =...+..++..+-..|
T Consensus 32 ~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR----L~~~~~~iievLL~~g 103 (167)
T PF07035_consen 32 YELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR----LGTAYEEIIEVLLSKG 103 (167)
T ss_pred HHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH----hhhhHHHHHHHHHhCC
Confidence 56788999999987665 5666778888877776666555432 344555555443 0125677788888999
Q ss_pred cHHHHHHHHHHh
Q 043265 80 AVDEGFQHFESV 91 (245)
Q Consensus 80 ~~~~a~~~~~~m 91 (245)
++-+|.++....
T Consensus 104 ~vl~ALr~ar~~ 115 (167)
T PF07035_consen 104 QVLEALRYARQY 115 (167)
T ss_pred CHHHHHHHHHHc
Confidence 999999998765
No 327
>PF13606 Ank_3: Ankyrin repeat
Probab=27.15 E-value=83 Score=15.89 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=5.8
Q ss_pred hhHHHHHHHHhcCC
Q 043265 48 KLLEAGKRFENDGV 61 (245)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (245)
|..+.++.+.+.|.
T Consensus 13 g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 13 GNIEIVKYLLEHGA 26 (30)
T ss_pred CCHHHHHHHHHcCC
Confidence 34444444444443
No 328
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=26.86 E-value=1.1e+02 Score=19.43 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 043265 109 DLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQT 145 (245)
Q Consensus 109 ~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~ 145 (245)
+.-.+.-.+++|..+|+.+. ...+..-..|+..|..
T Consensus 12 ~~~p~~~s~e~a~~l~egL~-nLrp~~lq~LL~~C~s 47 (69)
T PF11459_consen 12 SEVPKRQSFEEADELMEGLR-NLRPRVLQELLEHCTS 47 (69)
T ss_pred HhCCccCCHHHHHHHHHHHh-hcCHHHHHHHHHHCcc
Confidence 33344445667777777776 3334444566666644
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=3.7e+02 Score=25.85 Aligned_cols=59 Identities=22% Similarity=0.465 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHH-Hhc----------CCCCcHHHHHHHHHHHHhCCC
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFI-RNM----------QIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~-~~m----------~~~~~~~~~~~li~~~~~~g~ 148 (245)
++++|.++.. + .| -|+-+|..++|.|+-.+|+.+. ++. +.+.|.-.|..||..+..+..
T Consensus 636 ~lekA~eiC~---q-~~------~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 636 NLEKALEICS---Q-KN------FYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPE 705 (846)
T ss_pred CHHHHHHHHH---h-hC------cHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcH
Confidence 5666766664 1 12 3566677777777777776654 222 135688999999999887643
No 330
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=25.65 E-value=2.5e+02 Score=21.83 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcc
Q 043265 102 EHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 102 ~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
.....+|.-|.+.|+.+..+++.-.+. |...=.+.++..|.++|-.+.
T Consensus 23 ~v~k~lv~~y~~~~~~~~lE~lI~~LD--~~~LDidq~i~lC~~~~Lyda 70 (196)
T PF12816_consen 23 EVFKALVEHYASKGRLERLEQLILHLD--PSSLDIDQVIKLCKKHGLYDA 70 (196)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCC--HHhcCHHHHHHHHHHCCCCCe
Confidence 455777888888888777777777773 222223456677777766554
No 331
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=25.65 E-value=3.1e+02 Score=24.92 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH-hcCCCCcH-HHHH
Q 043265 60 GVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR-NMQIDASS-VVWE 137 (245)
Q Consensus 60 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~-~m~~~~~~-~~~~ 137 (245)
.+.-|..-|..-|.-|.+.+...+...+|.+|...++-.||+=.|. --.-|-.+-+++-|+.+|. .+++.||. ..|-
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~a-A~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYA-AKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhh-hhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 3445899999999988888889999999999988778888876663 3455666667999999885 44566653 4443
Q ss_pred H
Q 043265 138 T 138 (245)
Q Consensus 138 ~ 138 (245)
.
T Consensus 179 e 179 (568)
T KOG2396|consen 179 E 179 (568)
T ss_pred H
Confidence 3
No 332
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.52 E-value=52 Score=17.41 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcC-CCCcHHHHH
Q 043265 117 IAEAREFIRNMQ-IDASSVVWE 137 (245)
Q Consensus 117 ~~~a~~~~~~m~-~~~~~~~~~ 137 (245)
++.|..+|++.- +.|++.+|-
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHH
Confidence 466777777664 466666653
No 333
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=25.25 E-value=3.8e+02 Score=21.90 Aligned_cols=152 Identities=9% Similarity=0.031 Sum_probs=87.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHhhhhhhHHHHHHH-----HhcCCCCc--HhhHHHHHHHhcccC
Q 043265 9 LCREREVKAALEVMDKLKNIGI-FL-DSPDIIELLNVCMDLKLLEAGKRF-----ENDGVRPN--WSTFVGVITACGCFG 79 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~~~~~-----~~~~~~p~--~~t~~~ll~~~~~~g 79 (245)
-.+.|++++|.+-|+.+.++.. .| ...+--.++.++-+.+..++|... ...+-+|| -..|-..++-+....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3467999999999999986543 22 355666666777777877777543 22344443 344444444332221
Q ss_pred ----cHHHHHHHH---HHhhhh---cCCCcchHH-----------HH-HHHHHHhccCCHHHHHHHHHhcC--CCCcH--
Q 043265 80 ----AVDEGFQHF---ESVTRD---YDINPTLEH-----------FL-GIVDLYGRLQKIAEAREFIRNMQ--IDASS-- 133 (245)
Q Consensus 80 ----~~~~a~~~~---~~m~~~---~~~~p~~~~-----------~~-~li~~y~~~g~~~~a~~~~~~m~--~~~~~-- 133 (245)
+...+.+-| ++...+ ....||... ++ .+-+-|.+.|.+.-|..-|++|. .+-..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 222233222 222222 344555443 12 34588999999998888888774 11112
Q ss_pred -HHHHHHHHHHHhCCCCccccccc-cccc
Q 043265 134 -VVWETLEKYAQTEPGLLLGEPSS-SLRL 160 (245)
Q Consensus 134 -~~~~~li~~~~~~g~~~~~~~~~-~~~~ 160 (245)
...-.|..+|...|-.+.|+... .++.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 22334558888888888877766 4443
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.08 E-value=2.1e+02 Score=24.74 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=49.7
Q ss_pred hhhhhhHHHHHHHHhcCC--CC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHH
Q 043265 44 CMDLKLLEAGKRFENDGV--RP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEA 120 (245)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a 120 (245)
|.+.|.+++|...-..++ .| |.++|..-..+|.+...+..|+.-...... .| -..+.+|+|.|...++
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHHHHHHH
Confidence 455578888877766654 46 889999999999999998877765543322 12 3457888887765555
Q ss_pred HHHHH
Q 043265 121 REFIR 125 (245)
Q Consensus 121 ~~~~~ 125 (245)
+....
T Consensus 178 Lg~~~ 182 (536)
T KOG4648|consen 178 LGNNM 182 (536)
T ss_pred HhhHH
Confidence 55444
No 335
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=24.91 E-value=2.8e+02 Score=20.34 Aligned_cols=118 Identities=9% Similarity=0.139 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHH---hcCCC-------CcHhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 21 VMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFE---NDGVR-------PNWSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 21 lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~---~~~~~-------p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
+|.+++..--.|+..++.-.|+...=...++.+-++. .+|-. -+...|.++|.++.....+...-+++.+
T Consensus 5 ~f~~lr~~a~~~~~e~f~~ai~e~lV~EmYE~igKlRN~~~~G~~~~lp~~A~~~A~~~AmliGL~Nr~~ytT~a~~l~E 84 (143)
T PF07827_consen 5 FFEKLREAAESPESEEFRQAIREFLVGEMYEFIGKLRNARQSGPHTYLPYLAMQLAWYGAMLIGLHNRTLYTTSARVLPE 84 (143)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHCT---SSCCCHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHHHHHHHHhccceeeccccccHH
Confidence 5666665555677778877777766655666555542 23332 2556689999998887777776777776
Q ss_pred hhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Q 043265 91 VTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEP 147 (245)
Q Consensus 91 m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g 147 (245)
..+ ..-.|+. |..|+.. ..+|++.++.++++... ..|+.+..-+..+|
T Consensus 85 al~-Lp~rP~G--yd~l~~l-vm~G~L~d~~~i~~~cE-----~~W~Gl~~Wa~~hg 132 (143)
T PF07827_consen 85 ALS-LPSRPSG--YDELAQL-VMSGQLTDPEKIYESCE-----ALWTGLVKWAAEHG 132 (143)
T ss_dssp HTT-SSS--TT--HHHHHHH-HHHTB---HHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred Hhc-CCCCCcc--HHHHHHH-HhccccCCHHHHHHHHH-----HHHHHHHHHHHHcC
Confidence 655 4555654 4566554 56799999999998775 46777777766664
No 336
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=24.77 E-value=2.9e+02 Score=20.37 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=51.0
Q ss_pred hhhhhHHHHHHHHh--cCCC-CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHH---HHHHHHHHhccCCHH
Q 043265 45 MDLKLLEAGKRFEN--DGVR-PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEH---FLGIVDLYGRLQKIA 118 (245)
Q Consensus 45 ~~~~~~~~~~~~~~--~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~y~~~g~~~ 118 (245)
+..|.++.+.+... ..+- -+...||.-..++.-.|+.++|++-+++..+=.|-. +-.. |..=-..|...|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchH
Confidence 34455555444321 1222 356667777777777777777777666654423333 2222 222234566677777
Q ss_pred HHHHHHHhc----------C---CCCcHHHHHHHH
Q 043265 119 EAREFIRNM----------Q---IDASSVVWETLE 140 (245)
Q Consensus 119 ~a~~~~~~m----------~---~~~~~~~~~~li 140 (245)
.|+.=|+.- . +.|-....|-|+
T Consensus 133 ~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 133 AARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 777766422 1 355566666666
No 337
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.40 E-value=4e+02 Score=21.88 Aligned_cols=109 Identities=8% Similarity=-0.089 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhhhhhhHHHHHHHHhc-CCCCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 15 VKAALEVMDKLKNIGI----FLDSPDIIELLNVCMDLKLLEAGKRFEND-GVRPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~~~~~~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
.++|.+.|......+. ..++..-..++....+.|..+.+..+.+. .-.++..--..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 5678888888776422 34666667777777777766665555332 223456667788888888888888888887
Q ss_pred HhhhhcCCCcchHHHHHHHHHHhccCCH--HHHHHHHH
Q 043265 90 SVTRDYDINPTLEHFLGIVDLYGRLQKI--AEAREFIR 125 (245)
Q Consensus 90 ~m~~~~~~~p~~~~~~~li~~y~~~g~~--~~a~~~~~ 125 (245)
....+..+.+.- .+ .++..+...+.. +.+...|.
T Consensus 226 ~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 776521244332 33 333333322222 55555543
No 338
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=3e+02 Score=24.43 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=28.0
Q ss_pred HHcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCc
Q 043265 10 CREREVKAALEVMDKLKNI---GIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPN 64 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~ 64 (245)
.+.|++.+|.+.|.+.... +++|+.-.|-..-.+..+.|.++++..-...-...|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 4566666666666665432 334444445444445555555555544333333333
No 339
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=24.10 E-value=2.5e+02 Score=20.66 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=49.0
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CC-cHHHHHHHH---HHHHhC
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DA-SSVVWETLE---KYAQTE 146 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~-~~~~~~~li---~~~~~~ 146 (245)
+.+..|+++.|++.|.+... +.| ....||.=..+|.-.|+.++|++=+++-- + -+ .-....+.+ ..|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45677888888888887644 333 46678888888888888888887665542 1 11 112233333 234555
Q ss_pred CCCccccccc
Q 043265 147 PGLLLGEPSS 156 (245)
Q Consensus 147 g~~~~~~~~~ 156 (245)
|+.+.|..-|
T Consensus 129 g~dd~AR~DF 138 (175)
T KOG4555|consen 129 GNDDAARADF 138 (175)
T ss_pred CchHHHHHhH
Confidence 6666554433
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=6.9e+02 Score=24.44 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh----hhHHHHHHH--HhcC-CCCcHhhHHHHHHHhc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL----KLLEAGKRF--ENDG-VRPNWSTFVGVITACG 76 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~~~~~--~~~~-~~p~~~t~~~ll~~~~ 76 (245)
+-|..+.+...++-|+.+-. ..+. |..+...+...|+.. |++++|-.- ..-| +.| +.+|+-|-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHHHHhc
Confidence 34566667777777765533 3333 556677777777654 666665331 1111 111 22344444
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
....+..-..+++.+.+ .|+. +..+-+.|+.+|.|.++.+.-.++.+..
T Consensus 409 daq~IknLt~YLe~L~~-~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHK-KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHHHHHH-cccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 44445455555555544 3443 3344455666666666665555555544
No 341
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=23.90 E-value=26 Score=21.14 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 043265 13 REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMD 46 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~ 46 (245)
|--++.+.+|..|.++..-|..-.||-.|.=|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 4556788899999988888877777777666654
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=6.2e+02 Score=23.81 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=11.6
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
..-|..|=.+....|++..|.+.|.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHH
Confidence 3344444444444444444444443
No 343
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=3.2e+02 Score=23.51 Aligned_cols=81 Identities=11% Similarity=0.279 Sum_probs=52.8
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCC--CcchHHHH--HHHHHHhccCCHHHHHHHHHhcC--------CCCcHH-HHH
Q 043265 71 VITACGCFGAVDEGFQHFESVTRDYDI--NPTLEHFL--GIVDLYGRLQKIAEAREFIRNMQ--------IDASSV-VWE 137 (245)
Q Consensus 71 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~--~li~~y~~~g~~~~a~~~~~~m~--------~~~~~~-~~~ 137 (245)
++...-+.++.++|.++++++.+.... +|+.+.|. .+...+-..|+..++++++.+.+ +.|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334445566899999999999764322 46666654 56677778999999988876553 345443 355
Q ss_pred HHH-HHHHhCCCCcc
Q 043265 138 TLE-KYAQTEPGLLL 151 (245)
Q Consensus 138 ~li-~~~~~~g~~~~ 151 (245)
.+= .+|...|+...
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 555 55555555443
No 344
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.37 E-value=2.3e+02 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=39.2
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS 133 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~ 133 (245)
+..+.-.+-.-+.+...+..|-++|..|-. -.+++++....|+|.+|..+-++.+ +.||+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 344444444455566667777777776621 2467788888888888888888776 44554
No 345
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.31 E-value=63 Score=28.86 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhcccCcHHHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~ 89 (245)
|..--++|+-+|.+ |..+.++-+.+.|..+|..++ |+.+.-|+..|.+|-...++.
T Consensus 147 nrhGhTcLmIa~yk-Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 147 NRHGHTCLMIACYK-GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred ccCCCeeEEeeecc-CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 33444455555443 667777777888888887776 778888888888877666654
No 346
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=23.11 E-value=2.4e+02 Score=18.76 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=54.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNI-GIFLD-SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~-g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a 84 (245)
+.+.|..++.+.+.+|+++..+ .+.|+ ..-++..++-|-.... .-.|+++....|..++..+....-..-+
T Consensus 4 D~~tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~-------lVDGvPaQGG~~~~i~~~~i~~~a~~v~ 76 (85)
T PF07240_consen 4 DDATKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN-------LVDGVPAQGGFWGKIVKKIISPAAKSVA 76 (85)
T ss_pred hHHHHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh-------cccCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 4567888999999999999755 44444 4566777776654332 3478999999998888777766555555
Q ss_pred HHHHHHh
Q 043265 85 FQHFESV 91 (245)
Q Consensus 85 ~~~~~~m 91 (245)
..+|+..
T Consensus 77 ~~~~~~a 83 (85)
T PF07240_consen 77 DGFFKQA 83 (85)
T ss_pred HHHHHhh
Confidence 6665543
No 347
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=23.10 E-value=1.6e+02 Score=21.70 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLN 42 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~ 42 (245)
+|....+.+....+.++.+.+++.|+..+..|..-.|.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 46666777777788888888888888877777665443
No 348
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.09 E-value=1.2e+02 Score=28.78 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc--------chHHHHHHHHHHhccCCHHHHH
Q 043265 50 LEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP--------TLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 50 ~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p--------~~~~~~~li~~y~~~g~~~~a~ 121 (245)
+++|.++.+.+ |-+.-|..+...-...-.++-|+..|-....-.|++. +....-+=|.+| -|.+++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhh
Confidence 44455555543 3444555555555555555566655544432223311 111111223333 26677777
Q ss_pred HHHHhcC
Q 043265 122 EFIRNMQ 128 (245)
Q Consensus 122 ~~~~~m~ 128 (245)
+++-+|.
T Consensus 755 k~yld~d 761 (1189)
T KOG2041|consen 755 KLYLDAD 761 (1189)
T ss_pred hhhhccc
Confidence 7777665
No 349
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=22.97 E-value=2.4e+02 Score=18.70 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcc
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+..+++.+.++ | +.|..-.=..-++..+.+.|..+.+... ..+...|.++..+....|..+.
T Consensus 16 v~~ild~L~~~-g----vlt~~~~e~I~~~~t~~~qa~~Lld~L~-trG~~Af~~F~~aL~~~~~~~L 77 (86)
T cd08323 16 TSYIMDHMISD-G----VLTLDEEEKVKSKATQKEKAVMLINMIL-TKDNHAYVSFYNALLHEGYKDL 77 (86)
T ss_pred HHHHHHHHHhc-C----CCCHHHHHHHHcCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCChHH
Confidence 34456666553 3 2233333333445566777877777777 6677777777777765544333
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=22.69 E-value=3.1e+02 Score=19.97 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHH
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYA 143 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~ 143 (245)
+-.+..+-+..... +-+-|+......-+.++.+-+++.-|.++|+.++ +.+.-..|-.++.-.
T Consensus 64 D~wEvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred hHHHHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34456666666655 7888999999999999999999999999999886 333344677776443
No 351
>PHA02884 ankyrin repeat protein; Provisional
Probab=22.55 E-value=1e+02 Score=25.74 Aligned_cols=89 Identities=7% Similarity=-0.054 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh------hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchH---H
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS------TFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLE---H 103 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~ 103 (245)
|...+++++.+.++.|..+.++.+.+.|..||.. ...+.+...++.|+.+-+.-+++ .|..++.. .
T Consensus 29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~-----~GADVN~~~~~~ 103 (300)
T PHA02884 29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR-----YGADVNRYAEEA 103 (300)
T ss_pred CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH-----cCCCcCcccCCC
Confidence 4466788888888889999999999999988864 23344445567888876665553 45555542 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHh
Q 043265 104 FLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 104 ~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
..+.+..-+..|..+-+.-++..
T Consensus 104 g~TpLh~Aa~~~~~eivklLL~~ 126 (300)
T PHA02884 104 KITPLYISVLHGCLKCLEILLSY 126 (300)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC
Confidence 12334444456777766666644
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.52 E-value=5.4e+02 Score=22.68 Aligned_cols=62 Identities=13% Similarity=0.264 Sum_probs=40.7
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhc-CCC---c--chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDY-DIN---P--TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~---p--~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+...|++..|-.|+...|.++++.+.-+. ++. | .+.+|=-+=-+|.-.++..+|.+.|...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998764321 111 1 1122222334566677889999988644
No 353
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=22.50 E-value=83 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=23.4
Q ss_pred eeccccccCchhhHHHHhhhhcCceeeec
Q 043265 213 IKKNLRICGECHNFIKKLSSIENREIIVR 241 (245)
Q Consensus 213 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 241 (245)
-|+.|....|++.|+++..++.+..+++.
T Consensus 43 ~wkgf~l~EDpe~ai~~I~d~s~~aV~I~ 71 (110)
T PF10126_consen 43 DWKGFLLDEDPEMAIKAINDLSENAVLIG 71 (110)
T ss_pred HhcCcccccCHHHHHHHHHHhccCcEEEE
Confidence 46778788999999999999888777653
No 354
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=22.31 E-value=2e+02 Score=24.63 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hhhhhHHHHHHHHh
Q 043265 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVC-MDLKLLEAGKRFEN 58 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~~~~~~~ 58 (245)
++.|+++-..+++-|+.||..||--..+.. .+.|+.-.+.+|.+
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LItqIGNA~gyVRmir 326 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQIGNAMGYVRMIR 326 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 677888888888888888887776666554 23454444445443
No 355
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=5.2e+02 Score=22.39 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc---CCCCcHhhHHHHH----HHhcccCcHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---GVRPNWSTFVGVI----TACGCFGAVDEG 84 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~p~~~t~~~ll----~~~~~~g~~~~a 84 (245)
.|...+|-..++++.+. .+.|...++-.=++|...|..+.-+...+. .+.||...|+-+= -++..+|-.++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46777777888887664 456778888888888888766654443333 2345554444332 233457888888
Q ss_pred HHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 85 FQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
++.-++-.+ +.| |.-...+.-..+-.+|+..++.++..+-.
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 877765432 333 44455677777888888888888776553
No 356
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=2.8e+02 Score=19.53 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITA 74 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~ 74 (245)
+..||+-+|+++-+.| ++.=.+|...----|+..|+.++..
T Consensus 72 ~GlsYS~fi~gLkkA~-I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 72 NGLSYSRFINGLKKAG-IEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred cCCcHHHHHHHHHHcC-chhhHHHHHHHHhcCHHHHHHHHHH
Confidence 3347777777776554 2233333333333466666666654
No 357
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=21.78 E-value=4.2e+02 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=9.8
Q ss_pred HHHHHHHHhccCCHHHHHHHH
Q 043265 104 FLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 104 ~~~li~~y~~~g~~~~a~~~~ 124 (245)
+..+|+-|-.+....+|....
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHH
Confidence 334455555544444444433
No 358
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.64 E-value=3.2e+02 Score=19.77 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=13.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGI 30 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~ 30 (245)
|--+.-.|+++.|+++.+-..++|.
T Consensus 55 mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 55 MVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3334445556666666655555555
No 359
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.64 E-value=3.3e+02 Score=23.94 Aligned_cols=45 Identities=11% Similarity=-0.120 Sum_probs=21.9
Q ss_pred hhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhc-ccCcHHHHHHHH
Q 043265 44 CMDLKLLEAGKRFENDGVRPNWST---FVGVITACG-CFGAVDEGFQHF 88 (245)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~-~~g~~~~a~~~~ 88 (245)
.+..+..+.++.+.+.|..++... .+.+..|.. ..|+.+-+..++
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll 128 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL 128 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH
Confidence 445566666666666665543322 233333332 555555444444
No 360
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=21.57 E-value=87 Score=21.31 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=22.5
Q ss_pred eeccccccCchhhHHHHhhhhcCceee
Q 043265 213 IKKNLRICGECHNFIKKLSSIENREII 239 (245)
Q Consensus 213 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 239 (245)
=|++|.+-.|++.|++.++++.++-++
T Consensus 43 ~wkgf~~~EDpE~aik~i~D~s~~AVl 69 (110)
T COG4075 43 KWKGFSKEEDPESAIKAIRDLSDKAVL 69 (110)
T ss_pred HhcCcccccCHHHHHHHHHHhhhceEE
Confidence 477888889999999999988887664
No 361
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=21.45 E-value=2.6e+02 Score=18.72 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=39.1
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~ 124 (245)
....-.+-.-|-+.|..+.+.+.+..-+...|-. .|...|+.++-.++.-.-|+.++
T Consensus 32 d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 32 DPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hhHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 3444555667778888888888777665544433 56678888888888777777665
No 362
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=21.44 E-value=2.5e+02 Score=18.42 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=21.5
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHH
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEA 120 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a 120 (245)
.....|+.+.|..+++.+.. .|+ -+..+++++-..|.-+-|
T Consensus 41 ~~~~~G~~~aa~~Ll~~L~r----~~~--Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 41 AENNSGNIKAAWTLLDTLVR----RDN--WLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHhcCChHHHHHHHHHHHhc----cCC--hHHHHHHHHHHcCCHHHH
Confidence 33445666666666665542 223 335566666666654444
No 363
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=4.7e+02 Score=21.56 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhc---C---CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 104 FLGIVDLYGRLQKIAEAREFIRNM---Q---IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 104 ~~~li~~y~~~g~~~~a~~~~~~m---~---~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|-..|-.|.-..++..|++.+... + -.-|..+..-||.+|- .||.|.+..+.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 445555555556788888888763 2 1235677777888774 36666655544
No 364
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.35 E-value=4.9e+02 Score=21.73 Aligned_cols=105 Identities=11% Similarity=-0.024 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhc--CC-CCcHhhHHHHHHHhcc---cCcHHHHHHHHHHhhhhcCCCc-chHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFEND--GV-RPNWSTFVGVITACGC---FGAVDEGFQHFESVTRDYDINP-TLEHFL 105 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~-~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 105 (245)
|...|-.|=..|.+.|+++.|..--.. -+ .+|...+..+-.++.. .....++.++|++... ..| |+.+-.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHHH
Confidence 567788888888888877776543221 11 2234444444444433 3357789999998865 334 566667
Q ss_pred HHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHH
Q 043265 106 GIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLE 140 (245)
Q Consensus 106 ~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li 140 (245)
.|-..+...|++.+|...|+.|- .-|....|..+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 78889999999999999999995 345555666666
No 365
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.92 E-value=28 Score=28.15 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=52.5
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH--HHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCcccc
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD--LYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~ 153 (245)
++.|....|+.+++ |++.|++|||...+ .+.+.|++=-|- |+.- ++.++..|-+......+.|+.+..+
T Consensus 70 SHAGsSkQAraIlq------GL~ADVVTfNQVtDVqiLhdkg~lipAd--Wq~~-lPnnsSPfYS~~aFLVR~GNPK~Ik 140 (341)
T COG4150 70 SHAGSSKQARAILQ------GLKADVVTFNQVTDVQILHDKGKLIPAD--WQSR-LPNNSSPFYSTMAFLVRKGNPKNIK 140 (341)
T ss_pred ccccchHHHHHHHh------hcccceEEeecceeeeeehhcCCccchh--hhhh-CCCCCCccccchHHHhhcCCcccCc
Confidence 46788889998885 45569999998754 455555432221 1111 2445566777778888888877655
Q ss_pred ccc------ccccccccccCC
Q 043265 154 PSS------SLRLSNKKKDAG 168 (245)
Q Consensus 154 ~~~------~~~~~~~~~~~g 168 (245)
.-. ..-++|+.+..|
T Consensus 141 dW~DLvRdDVk~iFPNPKTSG 161 (341)
T COG4150 141 DWDDLVRDDVKLIFPNPKTSG 161 (341)
T ss_pred cHHHHhhhcceEecCCCCCCC
Confidence 322 444567775555
No 366
>PHA02791 ankyrin-like protein; Provisional
Probab=20.89 E-value=3.6e+02 Score=22.29 Aligned_cols=138 Identities=8% Similarity=-0.023 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhcccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDS-PDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~g~ 80 (245)
.|...++.|+.+-+..++. .|..++. ..++.|..+ +..|..+.++.+...|..++... ++.+.-+ +..|.
T Consensus 33 pLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d~~TpLh~A-a~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A-a~~g~ 106 (284)
T PHA02791 33 ALYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQA-ATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA-VDSGN 106 (284)
T ss_pred HHHHHHHcCCHHHHHHHHH----CcCCCcCCCCCCHHHHH-HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCC
Confidence 3444556676665544443 3332221 123333333 45577777777777776665432 3344433 44566
Q ss_pred HHHHHHHHHHhhhhcCCCcch---HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhCCCCccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTL---EHFLGIVDLYGRLQKIAEAREFIRNMQIDASSV-VWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~-~~~~li~~~~~~g~~~~~~~ 154 (245)
.+-+..+++ .|...+. .-+++.+..-+..|+.+-+.-++..-....|.. -++.|.-|+ ..|+.+.++.
T Consensus 107 ~eivk~Ll~-----~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa-~~g~~eiv~l 178 (284)
T PHA02791 107 MQTVKLFVK-----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI-KNGHVDMMIL 178 (284)
T ss_pred HHHHHHHHH-----CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHH-HcCCHHHHHH
Confidence 655555443 2332221 112344444455677777777766543112221 233444443 4455555443
No 367
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=20.51 E-value=2.4e+02 Score=18.66 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhhhh
Q 043265 13 REVKAALEVMDKLKN-IGIFLDSPDIIELLNVCMDLKL 49 (245)
Q Consensus 13 g~~~~A~~lf~~m~~-~g~~p~~~t~~~ll~~~~~~~~ 49 (245)
|+.+.|..+++.+.+ + .|+. |..++.|.-+.|.
T Consensus 48 g~~~aa~~Ll~~L~~~r--~~~w--f~~Fl~AL~~~g~ 81 (88)
T cd08812 48 GNIAAAEELLDRLERCD--KPGW--FQAFLDALRRTGN 81 (88)
T ss_pred ChHHHHHHHHHHHHHhc--cCCc--HHHHHHHHHHcCC
Confidence 566666666666654 2 2332 4445555444443
No 368
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.48 E-value=2.9e+02 Score=18.83 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=32.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHH---HhcCCCCcHh
Q 043265 11 REREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRF---ENDGVRPNWS 66 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~---~~~~~~p~~~ 66 (245)
+..++..|..+|..+.++|.- +...+.-+.......+..+.-..+ ++.-+.|+++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL~~L~~~ke~~~~~~~~ 93 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLV 93 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHHHHhccCCcCCCCCchh
Confidence 345677888899999888873 333434555555555555555333 3345666543
No 369
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.19 E-value=4.5e+02 Score=20.86 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhh--hhHHHHHHHHhcC-CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHh
Q 043265 36 DIIELLNVCMDL--KLLEAGKRFENDG-VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYG 112 (245)
Q Consensus 36 t~~~ll~~~~~~--~~~~~~~~~~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~ 112 (245)
.|...++++... ++++.|.+..... +.|+-.. -++.++...|+.+.|.+++..+.. ...+...-+.++.. .
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-H
Confidence 455666666543 5677776655443 3333222 377777778999999999876533 11222333444444 5
Q ss_pred ccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Q 043265 113 RLQKIAEAREFIRNMQIDASSVVWETLEKYAQTE 146 (245)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~ 146 (245)
.+|.+.+|..+-....-+-....|..++..|...
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 5688899988877776221245777777777643
No 370
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.00 E-value=2.7e+02 Score=19.90 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 82 DEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
++..++|..|.. .||--. ..-|...-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~-~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYS-KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446888999977 576543 4557788888889999999999986
Done!