Query 043265
Match_columns 245
No_of_seqs 166 out of 2313
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 6.2E-34 2.1E-38 250.7 13.3 173 2-180 29-217 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.2E-29 1.4E-33 219.9 15.3 148 1-149 63-226 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.1E-23 7.1E-28 191.4 5.9 152 1-153 129-292 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 3.7E-21 1.3E-25 176.6 8.1 126 33-164 126-262 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 2.7E-15 9.1E-20 133.6 9.3 124 2-127 87-226 (597)
6 2xpi_A Anaphase-promoting comp 99.6 7.3E-15 2.5E-19 130.7 9.5 223 2-236 308-579 (597)
7 1b89_A Protein (clathrin heavy 99.1 4E-11 1.4E-15 102.6 5.0 138 1-156 63-200 (449)
8 3mkr_A Coatomer subunit epsilo 99.1 2.1E-09 7E-14 87.9 13.4 158 2-164 68-233 (291)
9 1w3b_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.1E-12 79.7 16.3 151 2-156 172-328 (388)
10 1w3b_A UDP-N-acetylglucosamine 98.8 6.5E-08 2.2E-12 81.3 13.8 158 3-164 139-304 (388)
11 2y4t_A DNAJ homolog subfamily 98.8 4.7E-08 1.6E-12 83.5 13.0 159 2-164 180-362 (450)
12 2ho1_A Type 4 fimbrial biogene 98.8 1.8E-07 6.1E-12 73.6 14.8 151 4-156 42-198 (252)
13 2y4t_A DNAJ homolog subfamily 98.8 4.4E-08 1.5E-12 83.7 12.1 151 2-156 29-200 (450)
14 2vq2_A PILW, putative fimbrial 98.8 3E-07 1E-11 70.5 14.4 157 2-160 11-176 (225)
15 4eqf_A PEX5-related protein; a 98.8 5.2E-08 1.8E-12 81.1 10.7 92 72-163 184-279 (365)
16 3hym_B Cell division cycle pro 98.7 1.5E-07 5.3E-12 76.5 13.0 223 4-236 61-299 (330)
17 2q7f_A YRRB protein; TPR, prot 98.7 5.2E-07 1.8E-11 70.2 15.3 158 3-163 61-225 (243)
18 2ho1_A Type 4 fimbrial biogene 98.7 2.9E-07 9.8E-12 72.4 13.7 159 2-163 74-241 (252)
19 3as5_A MAMA; tetratricopeptide 98.7 2.2E-07 7.4E-12 68.9 11.8 159 2-163 11-176 (186)
20 2vq2_A PILW, putative fimbrial 98.7 4.6E-07 1.6E-11 69.5 13.6 158 2-163 45-214 (225)
21 2fo7_A Synthetic consensus TPR 98.7 1.2E-06 4.2E-11 61.0 14.7 124 2-128 4-130 (136)
22 3uq3_A Heat shock protein STI1 98.7 2.1E-07 7.3E-12 72.9 11.2 158 2-161 8-203 (258)
23 1b89_A Protein (clathrin heavy 98.7 2.3E-08 7.8E-13 85.7 5.8 139 2-161 97-237 (449)
24 1fch_A Peroxisomal targeting s 98.6 2.4E-07 8.4E-12 76.8 10.1 159 3-162 68-282 (368)
25 3hym_B Cell division cycle pro 98.6 2E-06 6.9E-11 69.8 15.0 158 3-163 94-268 (330)
26 3vtx_A MAMA; tetratricopeptide 98.6 2.5E-06 8.6E-11 63.8 14.4 159 2-164 8-174 (184)
27 4eqf_A PEX5-related protein; a 98.5 3E-07 1E-11 76.5 9.6 161 2-164 136-314 (365)
28 2gw1_A Mitochondrial precursor 98.5 2E-07 6.8E-12 80.7 8.7 222 2-236 240-478 (514)
29 3nf1_A KLC 1, kinesin light ch 98.5 1.4E-08 4.8E-13 82.1 1.2 161 2-162 30-226 (311)
30 3mkr_A Coatomer subunit epsilo 98.5 7.2E-07 2.5E-11 72.7 11.4 150 6-161 6-160 (291)
31 2q7f_A YRRB protein; TPR, prot 98.5 5.6E-07 1.9E-11 70.0 10.1 152 2-156 26-182 (243)
32 3uq3_A Heat shock protein STI1 98.5 1.3E-06 4.4E-11 68.4 11.0 158 2-161 41-237 (258)
33 2pl2_A Hypothetical conserved 98.5 1E-05 3.5E-10 62.7 15.9 156 5-164 11-184 (217)
34 2ond_A Cleavage stimulation fa 98.5 1.9E-06 6.4E-11 70.5 11.9 159 2-164 102-274 (308)
35 1fch_A Peroxisomal targeting s 98.5 1.1E-06 3.6E-11 72.9 10.5 159 2-164 101-318 (368)
36 3cv0_A Peroxisome targeting si 98.4 8.6E-06 2.9E-10 66.0 15.2 64 100-163 171-238 (327)
37 3fp2_A TPR repeat-containing p 98.4 1.7E-06 6E-11 75.3 11.0 219 4-236 248-491 (537)
38 3edt_B KLC 2, kinesin light ch 98.4 4.8E-07 1.6E-11 71.7 6.4 225 11-235 13-280 (283)
39 3ieg_A DNAJ homolog subfamily 98.4 6.2E-06 2.1E-10 67.5 13.3 86 6-92 127-215 (359)
40 2gw1_A Mitochondrial precursor 98.4 3.7E-06 1.3E-10 72.6 12.0 152 4-156 309-472 (514)
41 3ieg_A DNAJ homolog subfamily 98.3 1.6E-05 5.6E-10 65.0 14.9 154 7-163 45-220 (359)
42 3cv0_A Peroxisome targeting si 98.3 1.9E-06 6.5E-11 69.9 9.1 145 9-156 148-309 (327)
43 2pl2_A Hypothetical conserved 98.3 1.7E-05 5.8E-10 61.4 13.7 149 3-155 43-207 (217)
44 1xnf_A Lipoprotein NLPI; TPR, 98.3 9.8E-06 3.3E-10 64.1 12.4 120 2-125 46-168 (275)
45 3as5_A MAMA; tetratricopeptide 98.3 4.3E-05 1.5E-09 56.2 15.0 124 2-128 45-171 (186)
46 2fo7_A Synthetic consensus TPR 98.3 7.6E-06 2.6E-10 56.9 9.8 119 36-156 3-126 (136)
47 4i17_A Hypothetical protein; T 98.3 2.3E-05 8E-10 60.6 13.5 141 5-148 13-168 (228)
48 3nf1_A KLC 1, kinesin light ch 98.3 2E-06 7E-11 69.2 7.5 126 2-127 72-221 (311)
49 3u4t_A TPR repeat-containing p 98.3 1.7E-05 5.9E-10 62.6 12.8 156 5-164 9-175 (272)
50 4gyw_A UDP-N-acetylglucosamine 98.2 2E-05 6.8E-10 72.2 14.3 158 2-164 12-178 (723)
51 1xnf_A Lipoprotein NLPI; TPR, 98.2 5.7E-06 2E-10 65.4 8.7 143 11-156 17-167 (275)
52 4abn_A Tetratricopeptide repea 98.2 1.5E-05 5.1E-10 69.3 11.5 156 5-164 108-291 (474)
53 3edt_B KLC 2, kinesin light ch 98.1 1.2E-05 4E-10 63.6 8.8 126 2-127 46-195 (283)
54 2ooe_A Cleavage stimulation fa 98.1 2.9E-05 1E-09 68.1 11.9 158 2-164 324-496 (530)
55 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00017 5.7E-09 54.8 13.2 124 5-132 12-153 (213)
56 4abn_A Tetratricopeptide repea 98.0 6.7E-05 2.3E-09 65.2 12.1 146 2-152 140-311 (474)
57 1qqe_A Vesicular transport pro 98.0 3.1E-05 1.1E-09 62.7 9.0 163 2-164 40-232 (292)
58 3fp2_A TPR repeat-containing p 98.0 9.1E-05 3.1E-09 64.4 12.5 116 7-125 284-402 (537)
59 2ond_A Cleavage stimulation fa 97.9 0.00025 8.4E-09 57.7 13.6 143 11-156 69-226 (308)
60 3vtx_A MAMA; tetratricopeptide 97.8 0.00063 2.1E-08 50.4 13.6 129 2-134 42-175 (184)
61 1a17_A Serine/threonine protei 97.8 0.00047 1.6E-08 49.8 12.6 125 2-127 16-143 (166)
62 3mv2_B Coatomer subunit epsilo 97.8 0.00038 1.3E-08 57.0 12.6 73 18-91 85-162 (310)
63 2ooe_A Cleavage stimulation fa 97.8 0.00028 9.7E-09 61.8 12.6 146 12-160 292-454 (530)
64 1ouv_A Conserved hypothetical 97.8 0.00056 1.9E-08 54.2 13.2 145 5-156 12-173 (273)
65 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0004 1.4E-08 52.7 11.9 126 37-164 9-154 (213)
66 1na0_A Designed protein CTPR3; 97.8 0.001 3.4E-08 45.1 12.8 91 35-127 10-103 (125)
67 3u4t_A TPR repeat-containing p 97.7 0.0017 5.9E-08 50.9 15.6 143 2-148 40-191 (272)
68 1ouv_A Conserved hypothetical 97.7 0.00082 2.8E-08 53.2 13.7 146 4-156 43-209 (273)
69 3mv2_B Coatomer subunit epsilo 97.7 0.00018 6.1E-09 58.9 9.2 96 45-142 81-183 (310)
70 1qqe_A Vesicular transport pro 97.7 0.0003 1E-08 56.8 10.5 142 2-144 80-249 (292)
71 4f3v_A ESX-1 secretion system 97.7 0.00041 1.4E-08 56.0 11.1 133 5-140 108-248 (282)
72 2vsy_A XCC0866; transferase, g 97.6 0.00051 1.8E-08 60.7 12.2 141 12-156 2-151 (568)
73 2vyi_A SGTA protein; chaperone 97.6 0.0029 1E-07 43.1 13.7 110 36-148 14-129 (131)
74 1xi4_A Clathrin heavy chain; a 97.6 0.00068 2.3E-08 65.5 12.9 135 2-154 1137-1271(1630)
75 3qky_A Outer membrane assembly 97.6 0.00044 1.5E-08 54.5 10.1 155 7-164 23-228 (261)
76 2h6f_A Protein farnesyltransfe 97.6 0.00076 2.6E-08 57.0 11.8 159 2-164 100-273 (382)
77 3qou_A Protein YBBN; thioredox 97.6 0.0023 7.8E-08 51.5 14.2 145 6-154 124-276 (287)
78 1na0_A Designed protein CTPR3; 97.6 0.0021 7E-08 43.5 12.1 91 2-93 12-105 (125)
79 2r5s_A Uncharacterized protein 97.5 0.0015 5.2E-08 48.2 11.5 146 5-155 12-166 (176)
80 2qfc_A PLCR protein; TPR, HTH, 97.5 0.0018 6.3E-08 52.0 12.7 151 4-154 80-258 (293)
81 3q15_A PSP28, response regulat 97.4 0.0026 8.8E-08 53.0 12.7 155 2-156 185-359 (378)
82 3ro2_A PINS homolog, G-protein 97.4 0.00017 5.9E-09 58.0 5.1 160 2-161 126-333 (338)
83 3ulq_A Response regulator aspa 97.4 0.00085 2.9E-08 56.0 9.4 162 2-163 187-371 (383)
84 4a1s_A PINS, partner of inscut 97.4 0.00027 9.2E-09 59.3 6.3 154 3-156 130-326 (411)
85 2lni_A Stress-induced-phosphop 97.4 0.0049 1.7E-07 42.3 12.0 110 33-145 15-130 (133)
86 4ga2_A E3 SUMO-protein ligase 97.3 0.0012 4E-08 47.7 8.7 106 12-122 10-120 (150)
87 2kck_A TPR repeat; tetratricop 97.3 0.0044 1.5E-07 41.0 11.1 57 68-127 43-103 (112)
88 3ro2_A PINS homolog, G-protein 97.3 0.00044 1.5E-08 55.5 6.8 154 3-156 87-286 (338)
89 3sf4_A G-protein-signaling mod 97.3 0.00069 2.4E-08 56.3 8.1 159 3-161 91-297 (406)
90 4gyw_A UDP-N-acetylglucosamine 97.3 0.0017 5.9E-08 59.4 11.3 121 2-127 46-171 (723)
91 2ifu_A Gamma-SNAP; membrane fu 97.3 0.00039 1.3E-08 56.6 6.3 160 2-163 39-226 (307)
92 2lni_A Stress-induced-phosphop 97.3 0.0077 2.6E-07 41.3 12.2 110 2-115 19-132 (133)
93 1elr_A TPR2A-domain of HOP; HO 97.3 0.002 6.9E-08 44.1 9.0 51 2-53 7-57 (131)
94 4a1s_A PINS, partner of inscut 97.3 0.00028 9.5E-09 59.2 5.3 161 2-162 169-374 (411)
95 1xi4_A Clathrin heavy chain; a 97.3 0.0036 1.2E-07 60.7 13.1 142 2-153 1224-1375(1630)
96 4i17_A Hypothetical protein; T 97.3 0.0024 8.1E-08 49.0 10.2 129 32-163 5-149 (228)
97 3ro3_A PINS homolog, G-protein 97.3 0.00095 3.2E-08 47.5 7.4 126 2-127 12-155 (164)
98 3gw4_A Uncharacterized protein 97.2 0.00046 1.6E-08 51.7 5.5 147 9-156 2-170 (203)
99 3sf4_A G-protein-signaling mod 97.2 0.00033 1.1E-08 58.2 5.2 161 2-162 130-338 (406)
100 1p5q_A FKBP52, FK506-binding p 97.2 0.006 2E-07 50.3 12.7 122 3-127 151-291 (336)
101 2vsy_A XCC0866; transferase, g 97.2 0.009 3.1E-07 52.7 14.7 122 2-127 26-154 (568)
102 2kck_A TPR repeat; tetratricop 97.2 0.002 6.9E-08 42.8 8.0 97 64-162 5-108 (112)
103 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.0062 2.1E-07 46.8 11.8 149 5-156 10-207 (225)
104 2e2e_A Formate-dependent nitri 97.2 0.002 6.9E-08 47.3 8.6 120 10-133 21-148 (177)
105 2r5s_A Uncharacterized protein 97.2 0.0056 1.9E-07 45.1 11.0 118 2-126 43-169 (176)
106 3gw4_A Uncharacterized protein 97.1 0.003 1E-07 47.1 9.2 126 2-127 29-173 (203)
107 3urz_A Uncharacterized protein 97.1 0.003 1E-07 48.1 9.3 151 7-163 12-189 (208)
108 1elw_A TPR1-domain of HOP; HOP 97.1 0.0028 9.6E-08 42.4 8.2 96 34-132 4-104 (118)
109 4ga2_A E3 SUMO-protein ligase 97.1 0.0013 4.5E-08 47.4 6.6 118 44-164 7-133 (150)
110 2dba_A Smooth muscle cell asso 97.1 0.003 1E-07 44.4 8.3 103 33-138 27-138 (148)
111 2pzi_A Probable serine/threoni 97.1 0.0022 7.6E-08 58.2 9.2 150 10-164 402-567 (681)
112 2vyi_A SGTA protein; chaperone 97.0 0.0021 7.3E-08 43.8 7.2 98 63-162 10-111 (131)
113 4e6h_A MRNA 3'-END-processing 97.0 0.0077 2.6E-07 54.7 12.5 157 5-164 384-574 (679)
114 2qfc_A PLCR protein; TPR, HTH, 97.0 0.0072 2.5E-07 48.5 11.3 122 5-126 121-262 (293)
115 1elr_A TPR2A-domain of HOP; HO 97.0 0.0043 1.5E-07 42.3 8.1 109 35-143 5-122 (131)
116 4g1t_A Interferon-induced prot 96.9 0.0058 2E-07 52.0 10.4 92 2-93 54-166 (472)
117 1hz4_A MALT regulatory protein 96.9 0.017 6E-07 47.6 13.0 153 4-156 98-276 (373)
118 2dba_A Smooth muscle cell asso 96.9 0.033 1.1E-06 38.8 12.8 84 7-92 36-126 (148)
119 3ulq_A Response regulator aspa 96.9 0.0082 2.8E-07 49.9 10.9 122 2-127 227-365 (383)
120 3q49_B STIP1 homology and U bo 96.9 0.0036 1.2E-07 43.6 7.5 91 34-127 9-103 (137)
121 3upv_A Heat shock protein STI1 96.9 0.032 1.1E-06 38.2 12.2 60 65-127 38-98 (126)
122 2vgx_A Chaperone SYCD; alterna 96.8 0.027 9.2E-07 40.3 11.9 91 34-127 21-115 (148)
123 3sz7_A HSC70 cochaperone (SGT) 96.8 0.004 1.4E-07 45.2 7.5 92 33-127 10-105 (164)
124 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0041 1.4E-07 50.4 8.2 148 2-151 79-250 (307)
125 3qou_A Protein YBBN; thioredox 96.8 0.0097 3.3E-07 47.8 10.3 121 3-126 155-280 (287)
126 3gyz_A Chaperone protein IPGC; 96.8 0.0041 1.4E-07 45.2 7.3 60 65-127 70-130 (151)
127 1elw_A TPR1-domain of HOP; HOP 96.8 0.027 9.4E-07 37.3 11.2 91 2-93 7-100 (118)
128 2h6f_A Protein farnesyltransfe 96.8 0.0095 3.2E-07 50.2 10.4 142 2-147 134-288 (382)
129 4gco_A Protein STI-1; structur 96.8 0.0072 2.5E-07 42.1 8.2 89 36-127 15-107 (126)
130 3u3w_A Transcriptional activat 96.8 0.016 5.5E-07 46.4 11.4 160 3-162 79-268 (293)
131 3sz7_A HSC70 cochaperone (SGT) 96.8 0.033 1.1E-06 40.1 12.0 92 2-94 14-108 (164)
132 2yhc_A BAMD, UPF0169 lipoprote 96.7 0.029 9.8E-07 43.0 12.1 125 4-128 46-211 (225)
133 2pzi_A Probable serine/threoni 96.7 0.014 4.7E-07 53.0 11.7 140 4-148 438-583 (681)
134 4gco_A Protein STI-1; structur 96.7 0.027 9.2E-07 39.1 10.7 90 7-100 21-113 (126)
135 3u3w_A Transcriptional activat 96.7 0.015 5.2E-07 46.5 10.6 132 33-164 74-229 (293)
136 2vgx_A Chaperone SYCD; alterna 96.7 0.0059 2E-07 43.9 7.2 98 64-164 20-122 (148)
137 3qky_A Outer membrane assembly 96.6 0.026 9E-07 44.1 11.4 129 4-132 57-227 (261)
138 1wao_1 Serine/threonine protei 96.6 0.0068 2.3E-07 52.6 8.4 115 8-125 15-134 (477)
139 2fbn_A 70 kDa peptidylprolyl i 96.6 0.037 1.3E-06 41.3 11.6 127 5-151 44-174 (198)
140 2xcb_A PCRH, regulatory protei 96.6 0.0067 2.3E-07 42.9 7.0 88 37-127 21-112 (142)
141 3k9i_A BH0479 protein; putativ 96.6 0.0031 1.1E-07 43.1 5.0 60 65-127 27-87 (117)
142 2xcb_A PCRH, regulatory protei 96.6 0.044 1.5E-06 38.6 11.2 88 5-93 24-114 (142)
143 3q15_A PSP28, response regulat 96.5 0.025 8.4E-07 47.0 11.2 121 2-127 225-362 (378)
144 4gcn_A Protein STI-1; structur 96.5 0.025 8.5E-07 39.3 9.6 48 7-55 16-63 (127)
145 1hz4_A MALT regulatory protein 96.5 0.031 1.1E-06 46.0 11.4 150 7-156 22-197 (373)
146 3upv_A Heat shock protein STI1 96.5 0.011 3.9E-07 40.5 7.3 94 65-161 4-102 (126)
147 3q49_B STIP1 homology and U bo 96.4 0.056 1.9E-06 37.2 11.0 97 64-163 8-109 (137)
148 2l6j_A TPR repeat-containing p 96.4 0.042 1.4E-06 36.3 9.9 87 63-152 2-97 (111)
149 4e6h_A MRNA 3'-END-processing 96.4 0.011 3.8E-07 53.6 8.8 153 7-162 351-535 (679)
150 1a17_A Serine/threonine protei 96.4 0.017 5.8E-07 41.2 8.3 117 35-153 14-137 (166)
151 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.052 1.8E-06 46.6 11.9 26 3-28 272-297 (457)
152 3gyz_A Chaperone protein IPGC; 96.3 0.052 1.8E-06 39.2 10.2 94 5-102 42-138 (151)
153 2e2e_A Formate-dependent nitri 96.2 0.019 6.6E-07 41.9 7.9 99 63-164 42-148 (177)
154 4b4t_Q 26S proteasome regulato 96.2 0.13 4.3E-06 43.1 13.9 61 66-126 136-200 (434)
155 3rjv_A Putative SEL1 repeat pr 96.2 0.14 4.9E-06 38.7 12.9 116 7-127 26-155 (212)
156 3urz_A Uncharacterized protein 96.1 0.18 6.1E-06 38.0 13.2 133 5-141 60-198 (208)
157 2xev_A YBGF; tetratricopeptide 96.1 0.071 2.4E-06 36.2 9.9 94 5-127 8-102 (129)
158 2xev_A YBGF; tetratricopeptide 96.1 0.012 4.1E-07 40.3 5.7 92 70-164 7-109 (129)
159 2c2l_A CHIP, carboxy terminus 96.1 0.02 6.8E-07 45.8 7.7 92 33-127 3-98 (281)
160 3n71_A Histone lysine methyltr 96.0 0.025 8.6E-07 49.3 8.4 121 8-128 318-462 (490)
161 4g1t_A Interferon-induced prot 95.9 0.15 5E-06 43.2 13.1 160 2-163 250-462 (472)
162 1p5q_A FKBP52, FK506-binding p 95.9 0.03 1E-06 46.0 8.2 117 34-153 147-284 (336)
163 1hxi_A PEX5, peroxisome target 95.8 0.023 7.8E-07 39.1 6.0 60 65-127 51-111 (121)
164 1na3_A Designed protein CTPR2; 95.7 0.11 3.9E-06 32.6 9.1 78 64-144 8-88 (91)
165 2xm6_A Protein corresponding t 95.6 0.25 8.7E-06 42.4 13.4 17 12-28 92-108 (490)
166 3ro3_A PINS homolog, G-protein 95.5 0.017 5.9E-07 40.6 4.7 122 35-156 10-152 (164)
167 1hxi_A PEX5, peroxisome target 95.5 0.14 5E-06 34.9 9.4 87 6-93 24-113 (121)
168 3rjv_A Putative SEL1 repeat pr 95.4 0.28 9.6E-06 37.0 11.5 122 16-145 3-137 (212)
169 3k9i_A BH0479 protein; putativ 95.3 0.12 3.9E-06 34.9 8.4 103 11-113 2-109 (117)
170 2fbn_A 70 kDa peptidylprolyl i 95.3 0.096 3.3E-06 38.9 8.6 101 64-164 37-155 (198)
171 3rkv_A Putative peptidylprolyl 95.3 0.15 5E-06 36.5 9.2 114 7-143 19-141 (162)
172 2xm6_A Protein corresponding t 95.3 0.58 2E-05 40.1 14.5 18 12-29 128-145 (490)
173 1ihg_A Cyclophilin 40; ppiase 95.3 0.18 6.1E-06 42.1 10.8 129 3-151 227-359 (370)
174 3ma5_A Tetratricopeptide repea 95.3 0.12 4E-06 34.0 8.0 80 64-146 6-90 (100)
175 4gcn_A Protein STI-1; structur 95.2 0.11 3.6E-06 36.0 7.9 99 36-137 10-120 (127)
176 2c2l_A CHIP, carboxy terminus 95.2 0.2 6.7E-06 39.8 10.5 90 3-93 8-100 (281)
177 1ihg_A Cyclophilin 40; ppiase 94.6 0.11 3.7E-06 43.4 7.8 97 68-164 226-340 (370)
178 2if4_A ATFKBP42; FKBP-like, al 94.6 0.11 3.7E-06 42.7 7.6 116 7-140 187-305 (338)
179 2kat_A Uncharacterized protein 94.5 0.21 7.3E-06 33.3 7.9 61 64-127 18-79 (115)
180 2uy1_A Cleavage stimulation fa 94.2 0.78 2.7E-05 39.8 12.6 73 80-156 335-407 (493)
181 2if4_A ATFKBP42; FKBP-like, al 94.1 0.12 4.2E-06 42.4 7.0 97 65-164 179-297 (338)
182 3qwp_A SET and MYND domain-con 94.1 0.41 1.4E-05 40.8 10.3 63 65-127 329-397 (429)
183 2l6j_A TPR repeat-containing p 94.0 0.038 1.3E-06 36.5 3.1 30 64-93 37-66 (111)
184 3qww_A SET and MYND domain-con 94.0 0.27 9.1E-06 42.1 9.1 63 65-127 340-408 (433)
185 1kt0_A FKBP51, 51 kDa FK506-bi 94.0 0.18 6.2E-06 43.2 8.0 84 65-151 317-403 (457)
186 1wao_1 Serine/threonine protei 93.8 0.19 6.6E-06 43.4 7.9 110 43-155 15-132 (477)
187 1klx_A Cysteine rich protein B 93.8 0.29 9.9E-06 34.3 7.6 107 12-127 8-123 (138)
188 3rkv_A Putative peptidylprolyl 93.5 1.4 4.7E-05 31.2 11.9 67 33-102 62-131 (162)
189 2hr2_A Hypothetical protein; a 93.0 0.16 5.5E-06 37.1 5.2 94 68-164 14-135 (159)
190 2hr2_A Hypothetical protein; a 92.7 0.59 2E-05 34.0 7.9 100 7-127 19-128 (159)
191 3n71_A Histone lysine methyltr 92.7 0.24 8.1E-06 43.1 6.7 93 1-93 353-463 (490)
192 3qwp_A SET and MYND domain-con 92.6 0.53 1.8E-05 40.1 8.7 85 72-156 294-394 (429)
193 2kat_A Uncharacterized protein 92.6 0.57 2E-05 31.1 7.4 76 17-93 3-81 (115)
194 3e4b_A ALGK; tetratricopeptide 91.7 5.5 0.00019 33.7 16.8 134 5-145 182-330 (452)
195 3qww_A SET and MYND domain-con 91.5 0.52 1.8E-05 40.3 7.3 76 13-88 312-405 (433)
196 3ly7_A Transcriptional activat 91.4 5.4 0.00018 33.2 13.0 119 14-137 214-347 (372)
197 2uy1_A Cleavage stimulation fa 91.1 2.1 7.2E-05 37.0 11.0 115 5-127 292-410 (493)
198 4f3v_A ESX-1 secretion system 91.0 1.5 5.2E-05 35.1 9.1 124 38-163 106-240 (282)
199 3ma5_A Tetratricopeptide repea 89.4 0.94 3.2E-05 29.4 5.8 26 66-91 42-67 (100)
200 1zu2_A Mitochondrial import re 89.4 1.7 5.7E-05 31.6 7.5 111 10-145 13-136 (158)
201 2kc7_A BFR218_protein; tetratr 89.4 1.3 4.4E-05 28.2 6.5 54 72-128 7-62 (99)
202 2kc7_A BFR218_protein; tetratr 88.8 0.64 2.2E-05 29.7 4.6 46 7-53 8-54 (99)
203 4b4t_Q 26S proteasome regulato 88.6 3.7 0.00012 33.9 10.3 115 13-127 109-242 (434)
204 3mkq_A Coatomer beta'-subunit; 88.6 3.5 0.00012 37.3 10.8 74 4-91 634-707 (814)
205 1na3_A Designed protein CTPR2; 88.2 3.1 0.00011 25.5 8.4 76 36-114 11-90 (91)
206 1v54_E Cytochrome C oxidase po 88.1 1.4 4.8E-05 29.4 5.6 51 57-109 37-87 (109)
207 3mkq_A Coatomer beta'-subunit; 88.0 3 0.0001 37.8 9.9 99 9-128 609-708 (814)
208 1v54_E Cytochrome C oxidase po 87.1 2.2 7.7E-05 28.4 6.1 60 14-73 25-87 (109)
209 4gns_B Protein CSD3, chitin bi 87.1 4.4 0.00015 37.1 10.2 52 74-128 346-398 (754)
210 3bee_A Putative YFRE protein; 87.0 2.3 7.9E-05 27.5 6.4 74 63-140 4-82 (93)
211 2v5f_A Prolyl 4-hydroxylase su 84.7 3.7 0.00013 26.8 6.7 70 64-133 4-79 (104)
212 2y69_E Cytochrome C oxidase su 82.8 3.2 0.00011 29.3 5.6 48 59-108 82-129 (152)
213 3u64_A Protein TP_0956; tetrat 82.4 3.6 0.00012 33.1 6.6 89 49-140 178-284 (301)
214 3mkq_B Coatomer subunit alpha; 82.1 13 0.00044 27.4 11.0 103 8-128 14-116 (177)
215 3e4b_A ALGK; tetratricopeptide 81.7 23 0.00077 29.9 12.1 104 36-144 178-294 (452)
216 3ly7_A Transcriptional activat 80.1 3.7 0.00013 34.2 6.2 135 30-164 190-343 (372)
217 3dra_A Protein farnesyltransfe 79.8 22 0.00075 28.5 10.7 140 13-156 124-281 (306)
218 2y69_E Cytochrome C oxidase su 79.8 6 0.0002 27.9 6.1 60 14-73 68-130 (152)
219 1wy6_A Hypothetical protein ST 77.4 17 0.00058 25.9 8.8 56 69-126 95-150 (172)
220 1pc2_A Mitochondria fission pr 76.8 13 0.00045 26.6 7.5 68 63-133 30-104 (152)
221 1k1a_A B-cell lymphoma 3-encod 76.0 3.1 0.00011 31.3 4.4 146 4-153 11-167 (241)
222 2ff4_A Probable regulatory pro 75.1 12 0.00041 31.1 8.1 55 70-127 176-231 (388)
223 1pc2_A Mitochondria fission pr 71.4 21 0.00073 25.5 7.5 83 14-101 13-104 (152)
224 2v5f_A Prolyl 4-hydroxylase su 68.3 19 0.00064 23.2 6.4 65 4-93 10-74 (104)
225 3lvg_A Clathrin heavy chain 1; 67.2 0.037 1.3E-06 48.0 -9.0 115 33-156 82-222 (624)
226 1wy6_A Hypothetical protein ST 63.2 38 0.0013 24.1 7.1 127 10-155 18-147 (172)
227 2etb_A Transient receptor pote 61.0 1.6 5.3E-05 33.6 -0.3 135 4-144 4-181 (256)
228 3kea_A K1L; tropism, ANK repea 59.9 4.9 0.00017 31.6 2.5 138 5-154 34-179 (285)
229 1zu2_A Mitochondrial import re 58.4 2.7 9.3E-05 30.4 0.7 86 76-164 13-124 (158)
230 2ff4_A Probable regulatory pro 58.1 40 0.0014 27.9 7.9 72 36-107 173-251 (388)
231 3aji_A 26S proteasome non-ATPa 57.6 11 0.00039 27.9 4.2 140 3-151 7-154 (231)
232 3twr_A Tankyrase-2; ankyrin re 56.0 9.8 0.00033 26.6 3.4 19 46-64 51-69 (165)
233 2p58_C Putative type III secre 55.3 43 0.0015 22.3 6.6 57 80-140 22-78 (116)
234 1wdy_A 2-5A-dependent ribonucl 53.6 16 0.00056 27.8 4.6 114 3-127 6-128 (285)
235 3eu9_A Huntingtin-interacting 52.2 28 0.00096 25.6 5.6 134 6-150 13-157 (240)
236 3bee_A Putative YFRE protein; 51.7 43 0.0015 21.2 6.3 62 32-93 4-71 (93)
237 2aja_A Ankyrin repeat family p 48.4 64 0.0022 26.6 7.6 99 45-151 100-214 (376)
238 3e3v_A Regulatory protein RECX 47.1 80 0.0027 22.9 9.5 116 15-132 49-168 (177)
239 2dzn_A Probable 26S proteasome 46.7 16 0.00055 26.9 3.4 139 4-151 4-155 (228)
240 3jxi_A Vanilloid receptor-rela 45.6 4.3 0.00015 31.1 -0.0 135 4-144 7-185 (260)
241 1bd8_A P19INK4D CDK4/6 inhibit 45.1 21 0.00071 24.5 3.6 114 3-126 3-123 (156)
242 1klx_A Cysteine rich protein B 44.4 70 0.0024 21.5 9.3 71 71-145 31-105 (138)
243 4fhn_B Nucleoporin NUP120; pro 42.8 83 0.0028 30.2 8.3 111 7-121 850-991 (1139)
244 3lvg_A Clathrin heavy chain 1; 40.5 5.6 0.00019 34.7 -0.1 86 64-156 82-167 (624)
245 1ihb_A P18-INK4C(INK6), cyclin 40.2 14 0.00048 25.6 2.0 80 2-88 5-90 (162)
246 1awc_B Protein (GA binding pro 40.2 50 0.0017 22.4 5.0 115 2-126 2-122 (153)
247 3mkq_B Coatomer subunit alpha; 39.9 1.1E+02 0.0037 22.4 10.4 106 2-128 37-142 (177)
248 3f6q_A Integrin-linked protein 39.6 34 0.0012 24.1 4.2 57 8-65 11-67 (179)
249 1nzn_A CGI-135 protein, fissio 39.3 91 0.0031 21.4 6.8 68 63-132 33-106 (126)
250 1nzn_A CGI-135 protein, fissio 38.3 95 0.0032 21.3 5.9 87 76-164 12-107 (126)
251 1wdy_A 2-5A-dependent ribonucl 37.9 37 0.0013 25.7 4.4 132 4-145 41-192 (285)
252 1n0r_A 4ANK, 4 ankyrin repeats 35.9 47 0.0016 21.3 4.1 79 5-88 5-88 (126)
253 3bu8_A Telomeric repeat-bindin 35.4 1.1E+02 0.0036 23.4 6.1 48 81-128 88-141 (235)
254 3ffl_A Anaphase-promoting comp 35.4 1.2E+02 0.0041 21.9 6.3 74 66-140 64-161 (167)
255 2b7e_A PRE-mRNA processing pro 34.7 18 0.0006 21.4 1.4 34 15-48 2-36 (59)
256 2wpv_A GET4, UPF0363 protein Y 34.4 1.8E+02 0.0061 23.3 12.4 23 2-24 36-58 (312)
257 1wty_A Hypothetical protein TT 34.1 1E+02 0.0036 20.5 6.2 85 14-105 3-90 (119)
258 2pnn_A Transient receptor pote 33.7 11 0.00038 29.0 0.6 116 4-125 15-169 (273)
259 3hra_A Ankyrin repeat family p 33.7 25 0.00085 25.3 2.6 135 6-144 9-149 (201)
260 2nsz_A Programmed cell death p 33.6 90 0.0031 21.3 5.3 57 37-93 10-71 (129)
261 2rfa_A Transient receptor pote 31.8 56 0.0019 24.0 4.4 104 4-121 39-171 (232)
262 3esl_A Checkpoint serine/threo 31.5 72 0.0025 23.9 4.7 48 15-62 95-143 (202)
263 3utm_A Tankyrase-1; tankyrase, 31.4 38 0.0013 26.7 3.5 111 5-126 27-146 (351)
264 3ygs_P Procaspase 9; apoptosis 30.8 62 0.0021 20.9 3.8 64 20-85 25-88 (97)
265 3v30_A DNA-binding protein rfx 30.2 35 0.0012 23.8 2.8 114 6-126 6-124 (172)
266 3u64_A Protein TP_0956; tetrat 30.0 2.1E+02 0.0073 22.8 8.8 89 15-106 179-282 (301)
267 2p1h_A APAF-1, apoptotic prote 29.9 1.1E+02 0.0036 19.3 5.0 35 113-148 48-82 (94)
268 4b4t_R RPN7, 26S proteasome re 29.8 2.4E+02 0.0083 23.4 11.2 90 4-95 136-238 (429)
269 2aja_A Ankyrin repeat family p 29.7 2.3E+02 0.0078 23.1 10.2 111 4-125 94-220 (376)
270 1oai_A Nuclear RNA export fact 29.1 52 0.0018 19.2 2.9 21 12-32 33-53 (59)
271 1d9s_A Cyclin-dependent kinase 28.6 16 0.00054 24.7 0.6 55 5-65 15-72 (136)
272 4a1g_A Mitotic checkpoint seri 28.5 78 0.0027 22.5 4.3 50 49-99 84-134 (152)
273 3ygs_P Procaspase 9; apoptosis 27.6 1.2E+02 0.0041 19.4 4.8 31 116-147 52-82 (97)
274 2jab_A H10-2-G3; HER2, darpin, 27.1 92 0.0032 20.5 4.5 20 45-64 22-41 (136)
275 2nsz_A Programmed cell death p 27.1 75 0.0026 21.7 3.9 43 3-46 11-53 (129)
276 2o03_A Probable zinc uptake re 27.0 78 0.0027 21.5 4.1 48 4-51 15-62 (131)
277 1k1a_A B-cell lymphoma 3-encod 26.7 46 0.0016 24.5 3.1 138 4-153 48-200 (241)
278 2qfz_A TBC1 domain family memb 26.6 2.5E+02 0.0085 22.5 10.7 128 16-144 189-331 (345)
279 1zbp_A Hypothetical protein VP 26.4 1.7E+02 0.0058 23.0 6.2 29 63-91 29-57 (273)
280 3eiq_C Programmed cell death p 26.0 2.7E+02 0.0093 22.8 9.7 42 103-145 219-263 (358)
281 1zl8_A LIN-7; heterodimer, alp 25.7 35 0.0012 19.3 1.5 22 13-34 7-28 (53)
282 2ion_A PDCD4, programmed cell 25.7 81 0.0028 22.3 4.0 58 36-93 11-73 (152)
283 1mzb_A Ferric uptake regulatio 24.6 90 0.0031 21.3 4.0 43 6-48 24-67 (136)
284 3ljn_A Hypothetical protein; a 24.5 55 0.0019 26.2 3.3 142 4-153 22-190 (364)
285 3v31_A Ankyrin repeat family A 24.3 1.2E+02 0.0041 20.7 4.8 112 6-125 7-123 (167)
286 2fe3_A Peroxide operon regulat 23.9 98 0.0034 21.4 4.2 59 23-82 11-73 (145)
287 2wvi_A Mitotic checkpoint seri 23.6 1.1E+02 0.0038 22.0 4.4 51 49-100 79-130 (164)
288 3mwm_A ZUR, putative metal upt 23.6 69 0.0024 22.1 3.3 48 4-51 18-65 (139)
289 2dod_A Transcription elongatio 23.5 1.2E+02 0.0039 19.1 3.9 35 80-115 15-49 (82)
290 3esl_A Checkpoint serine/threo 23.5 2.3E+02 0.008 21.1 6.4 47 78-125 92-139 (202)
291 3b7b_A Euchromatic histone-lys 23.3 59 0.002 23.9 3.1 117 4-127 13-134 (237)
292 1uzc_A Hypothetical protein FL 23.2 96 0.0033 18.8 3.4 35 80-115 13-47 (71)
293 2y1l_E Darpin-8.4; hydrolase-i 22.8 1.2E+02 0.0041 20.8 4.6 18 46-63 23-40 (169)
294 4b4t_S RPN3, 26S proteasome re 21.1 4.1E+02 0.014 23.1 9.6 25 2-26 234-258 (523)
295 3qye_A TBC1 domain family memb 21.0 3.1E+02 0.011 21.7 14.6 130 14-144 164-306 (331)
296 3eu9_A Huntingtin-interacting 20.8 68 0.0023 23.4 3.0 81 4-89 44-130 (240)
297 2xig_A Ferric uptake regulatio 20.7 1.1E+02 0.0037 21.4 3.8 59 22-81 15-77 (150)
298 3f3f_C Nucleoporin NUP85; stru 20.6 50 0.0017 29.0 2.4 49 71-122 522-570 (570)
299 1dce_A Protein (RAB geranylger 20.5 4.2E+02 0.014 22.9 13.1 159 2-163 66-270 (567)
300 4gpm_A Engineered protein OR26 20.1 1.5E+02 0.0052 20.8 4.6 105 9-125 11-124 (169)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.2e-34 Score=250.67 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=159.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-------------hHHHHHHHHhcCCCCcHhhH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-------------LLEAGKRFENDGVRPNWSTF 68 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-------------~~~~~~~~~~~~~~p~~~t~ 68 (245)
++.+|++|+|.|++++|+++|++|++.|++||.+|||+||.+|++.+ +.+.+.+|...|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67899999999999999999999999999999999999999998753 34566788999999999999
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHHh
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQT 145 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~~ 145 (245)
|+||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|. +.||..||++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999988 7999999999999999999999999999999995 79999999999999999
Q ss_pred CCCCcccccccccccccccccCCcccccccccccC
Q 043265 146 EPGLLLGEPSSSLRLSNKKKDAGYMPYTEYVLRDL 180 (245)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 180 (245)
.|+++. +.++..+|+..|..|+..|+...+
T Consensus 188 ~g~~d~-----A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 188 TKNADK-----VYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp TTCHHH-----HHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred CCCHHH-----HHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999988 667777788899999998875443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.2e-29 Score=219.93 Aligned_cols=148 Identities=7% Similarity=0.141 Sum_probs=137.8
Q ss_pred ChhHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHH----HHHhcCCCCcHhh
Q 043265 1 DLNSELKHLCRERE---------VKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGK----RFENDGVRPNWST 67 (245)
Q Consensus 1 t~n~ll~~~~~~g~---------~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~----~~~~~~~~p~~~t 67 (245)
|||+||.+|++.+. +++|.++|++|.+.|+.||.+|||+||.+|++.|.++.|. +|.+.|+.||..|
T Consensus 63 tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 63 HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 69999999998765 7899999999999999999999999999999999888775 5688899999999
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHH
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQ 144 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~ 144 (245)
||+||.+|++.|++++|.++|++|.+ .|+.||..||++||++|++.|++++|.++|++|+ .+|+..||++++..++
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999988 7999999999999999999999999999999996 7899999999998887
Q ss_pred hCCCC
Q 043265 145 TEPGL 149 (245)
Q Consensus 145 ~~g~~ 149 (245)
..+..
T Consensus 222 s~~a~ 226 (501)
T 4g26_A 222 SEVAT 226 (501)
T ss_dssp SHHHH
T ss_pred cCcch
Confidence 65433
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=191.38 Aligned_cols=152 Identities=7% Similarity=-0.001 Sum_probs=126.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhhhhhhHHHH----HHHHhcCCCCcHhhHHHHHH
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLK---NIGIFLDSPDIIELLNVCMDLKLLEAG----KRFENDGVRPNWSTFVGVIT 73 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~p~~~t~~~ll~ 73 (245)
|||+||++||++|++++|.++|.+|. +.|+.||.+|||+||++||+.|.+++| .+|.+.|+.||.+|||+||.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 69999999999999999999998876 468999999999999999999977776 55788999999999999999
Q ss_pred HhcccCc-HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhCCC
Q 043265 74 ACGCFGA-VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQID----ASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 74 ~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~----~~~~~~~~li~~~~~~g~ 148 (245)
++|+.|+ .++|.++|++|.. .|+.||.++|+++++.+.+.+-++...+++.++.-+ |.+.+.+-|...|.+.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~~ 287 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCSC
T ss_pred HHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCCC
Confidence 9999998 5789999999988 699999999999999999887777777776665421 123444445577777665
Q ss_pred Ccccc
Q 043265 149 LLLGE 153 (245)
Q Consensus 149 ~~~~~ 153 (245)
+...+
T Consensus 288 ~s~pk 292 (1134)
T 3spa_A 288 VSYPK 292 (1134)
T ss_dssp CCCCC
T ss_pred CcCcc
Confidence 44443
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.7e-21 Score=176.60 Aligned_cols=126 Identities=11% Similarity=0.137 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHH-------hcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFE-------NDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFL 105 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~-------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 105 (245)
-..|||+||++||+.|.++.|.++. ..|+.||.+|||+||.+||+.|++++|.++|++|.+ .|+.||++|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHH
Confidence 3579999999999999999987653 458999999999999999999999999999999988 79999999999
Q ss_pred HHHHHHhccCCH-HHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCCccccccccccccccc
Q 043265 106 GIVDLYGRLQKI-AEAREFIRNMQ---IDASSVVWETLEKYAQTEPGLLLGEPSSSLRLSNKK 164 (245)
Q Consensus 106 ~li~~y~~~g~~-~~a~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~ 164 (245)
+||++||+.|+. ++|.++|++|. +.||.++||+++.++.+.+-++. +.++.|+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~-----Vrkv~P~f 262 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA-----VHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH-----HGGGCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH-----HHHhCccc
Confidence 999999999985 78999999995 89999999999988877543333 44444444
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.59 E-value=2.7e-15 Score=133.57 Aligned_cols=124 Identities=12% Similarity=-0.038 Sum_probs=89.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCcHhhHHHHHHHhcccC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~~~t~~~ll~~~~~~g 79 (245)
|+.++.+|.+.|++++|.++|++|.. ..|+..++..+..+|.+.|.++.|.+..... .++|..+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 67788888888888888888888874 4567777888888888888777777665443 5667777777777777777
Q ss_pred cHHHHHHHHHHhhhhc--------------CCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 80 AVDEGFQHFESVTRDY--------------DINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~--------------~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
++++|.++|+++..+. +..++..+|+.++.+|.+.|++++|.++|++|
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777433222 23445677777777777777777777777655
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.56 E-value=7.3e-15 Score=130.72 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=122.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------------------CCCHHHHHHHHHHhhhhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGI---------------------------------FLDSPDIIELLNVCMDLK 48 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~---------------------------------~p~~~t~~~ll~~~~~~~ 48 (245)
|+.+..+|.+.|++++|.++|+++.+.+. ..+..+|+.+...|.+.|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 45555666666666666666666554331 234556666666666666
Q ss_pred hHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 49 LLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 49 ~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
.+++|.+..+.. ..| +..+|+.++.+|.+.|++++|.++|+++.+. ...+..+|+.+..+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666555443221 122 4556666666666666666666666666441 12255666666666666666666666666
Q ss_pred hcC--CCCcHHHHHHHHHHHHhCCCCccccccc--ccccccccccCCccccc--ccccccCchhhhhcccccchHHHHHH
Q 043265 126 NMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKKKDAGYMPYT--EYVLRDLDQEAKEKPQTYRSERLAVA 199 (245)
Q Consensus 126 ~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~~~g~~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~a 199 (245)
++. .+.+..+|+.+...|.+.|+++.|...+ +++..|+. |..|+. ..+..... .+...++...|
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~p~~~~~~~~~l~~-------~~~~~g~~~~A 535 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT---QSNEKPWAATWANLGH-------AYRKLKMYDAA 535 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCSGGGHHHHHHHHH-------HHHHTTCHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc---ccchhhHHHHHHHHHH-------HHHHhcCHHHH
Confidence 653 2335666666666666666666655554 33333221 334442 12211111 11223333344
Q ss_pred HHhhcCC----CCCe---EEeeccccccCchhhHHHHhhhhcCc
Q 043265 200 YGLISTP----PGRT---LRIKKNLRICGECHNFIKKLSSIENR 236 (245)
Q Consensus 200 ~~l~~~~----~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 236 (245)
...++.+ |... ..+...|.+.|+.++|.+.|+++.+.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3333222 3222 23667788889999999999887653
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.12 E-value=4e-11 Score=102.63 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
+|..++.++.+.|++++|++.+...++. .|++.+.+.++.+|++.|+++++.++.+. |+..+|..+-..|...|.
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC---C----------------C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCC
Confidence 3566777888888899998866655553 45678899999999999999998888764 788899999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+++|..+|..+ ..|..|.+++.+.|++++|.+.+.+.. ++.+|..++.+|...|+++.|....
T Consensus 138 yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 138 YDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp TTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999866 378999999999999999999999995 8899999999999999999986554
No 8
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=2.1e-09 Score=87.90 Aligned_cols=158 Identities=8% Similarity=0.022 Sum_probs=128.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
+..+...+.+.|+.++|++.|+++...+..|+ ...+..+-..+.+.|.+++|.+.... +.+...+..+...+.+.|+
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 45667788899999999999999998887675 44555555788899999999988776 5788899999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcchHH---HHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEH---FLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
+++|.+.|+.+.+. .|+... ...++..+...|++++|..+|+++. .+.+...|+.+-.++...|+++.|...
T Consensus 146 ~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999763 365432 2334566667799999999999884 356788899999999999999999888
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
+ ++++.|+.
T Consensus 223 l~~al~~~p~~ 233 (291)
T 3mkr_A 223 LQEALDKDSGH 233 (291)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 7 77766654
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=1.2e-07 Score=79.66 Aligned_cols=151 Identities=10% Similarity=0.063 Sum_probs=75.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~ 78 (245)
|+.+-..|.+.|++++|.+.|+++.+.+- -+...|..+-..+...|.++.+...... ...| +..++..+...|.+.
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 45566677777778888777777765431 1244455555555555554444332111 1222 244455555555555
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++++|.+.|+.+.+ ..| +..+|..+..+|.+.|++++|...|+++. .+.+..+|+.+...+...|+.+.|...
T Consensus 251 g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555554433 122 23344555555555555555555554442 123344455555555555555544444
Q ss_pred c
Q 043265 156 S 156 (245)
Q Consensus 156 ~ 156 (245)
+
T Consensus 328 ~ 328 (388)
T 1w3b_A 328 Y 328 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=6.5e-08 Score=81.30 Aligned_cols=158 Identities=11% Similarity=-0.016 Sum_probs=127.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g 79 (245)
+.+-..|.+.|++++|.++|.++.+.. +-+..+|..+...|.+.|.++.+....+.- ..| +...|..+-..+...|
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 445567888899999999999998753 235788999999999999888876653321 234 4678888999999999
Q ss_pred cHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++++|...|++... +.| +..++..+..+|.+.|++++|...|+++. ..| +..+|..+...+...|+.+.|...+
T Consensus 218 ~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 218 IFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp CTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988755 345 46788999999999999999999998874 445 4678999999999999999988777
Q ss_pred --cccccccc
Q 043265 157 --SLRLSNKK 164 (245)
Q Consensus 157 --~~~~~~~~ 164 (245)
++++.|..
T Consensus 295 ~~al~~~p~~ 304 (388)
T 1w3b_A 295 NTALRLCPTH 304 (388)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHhhCccc
Confidence 77766654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.83 E-value=4.7e-08 Score=83.54 Aligned_cols=159 Identities=10% Similarity=0.054 Sum_probs=120.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHH-------
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGV------- 71 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~l------- 71 (245)
++.+...|.+.|++++|.++|.++.+.+ ..+..+|..+...|...|.++.|....+. ...|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4566778888888888888888887653 23578888888888888888877665332 23444 3344444
Q ss_pred -----HHHhcccCcHHHHHHHHHHhhhhcCCCcc-----hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHH
Q 043265 72 -----ITACGCFGAVDEGFQHFESVTRDYDINPT-----LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETL 139 (245)
Q Consensus 72 -----l~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~l 139 (245)
...|.+.|++++|.++|+++.+. .|+ ..+|..+..+|.+.|++++|...++++. ..| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78888999999999999988653 344 4578889999999999999999998863 334 67889999
Q ss_pred HHHHHhCCCCccccccc--cccccccc
Q 043265 140 EKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 140 i~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..+|...|+++.|...+ ++++.|+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 99999999999988777 77766654
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.80 E-value=1.8e-07 Score=73.56 Aligned_cols=151 Identities=11% Similarity=-0.030 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~ 80 (245)
.+-..|...|++++|.++|.++.+.. ..+...|..+...|...|.++.|.+..+.. .+.+...+..+...|...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 34455666666666666666665542 224555666666666666666555432221 12245556666666666666
Q ss_pred HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 81 VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+++|.++|+.... .+..| +...+..+..+|.+.|++++|...|++.. . +.+...|..+...+...|+.+.|...+
T Consensus 121 ~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 121 YEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666544 22333 34455566666666666666666665542 1 223455555556666666666555544
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.80 E-value=4.4e-08 Score=83.69 Aligned_cols=151 Identities=12% Similarity=-0.072 Sum_probs=86.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~ 78 (245)
|..+...|.+.|++++|.++|+++.+.. +.+..+|..+..+|.+.|.++.|......- . +.+...+..+..+|.+.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 4556667777777777777777776542 235667777777777777666665542221 1 22355666666667777
Q ss_pred CcHHHHHHHHHHhhhhcCCCcch----HHHHHHHH------------HHhccCCHHHHHHHHHhcC--CCCcHHHHHHHH
Q 043265 79 GAVDEGFQHFESVTRDYDINPTL----EHFLGIVD------------LYGRLQKIAEAREFIRNMQ--IDASSVVWETLE 140 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~------------~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li 140 (245)
|++++|.++|+.+.+ ..|+. ..+..+.. .|.+.|++++|...|+.+. .+.+..+|..+.
T Consensus 108 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 777777777766643 23332 33333322 2566666666666665542 123445555555
Q ss_pred HHHHhCCCCccccccc
Q 043265 141 KYAQTEPGLLLGEPSS 156 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~ 156 (245)
..|...|+.+.|...+
T Consensus 185 ~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDL 200 (450)
T ss_dssp HHHHHTTCGGGGHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 5555556655555444
No 14
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.75 E-value=3e-07 Score=70.52 Aligned_cols=157 Identities=8% Similarity=-0.080 Sum_probs=125.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+...|.+.|++++|.+.|.+..+.. ..+...|..+...|...|.++.+.+..... .+.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 4566778999999999999999988754 235788999999999999888887654332 234678899999999999
Q ss_pred -CcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccc
Q 043265 79 -GAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 79 -g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
|++++|.+.++.+.+ .+..|+ ...+..+..+|.+.|++++|...|++.. . +.+...|..+...+...|+.+.|..
T Consensus 90 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999876 344443 6778899999999999999999998774 2 3357788888889999999888776
Q ss_pred cc--cccc
Q 043265 155 SS--SLRL 160 (245)
Q Consensus 155 ~~--~~~~ 160 (245)
.. +++.
T Consensus 169 ~~~~~~~~ 176 (225)
T 2vq2_A 169 YFKKYQSR 176 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 65 4443
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.75 E-value=5.2e-08 Score=81.14 Aligned_cols=92 Identities=7% Similarity=-0.030 Sum_probs=56.1
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCC
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGL 149 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~ 149 (245)
...+.+.|++++|.++|+++.+...-.++..+|..+...|.+.|++++|...|++.. . +.+..+|+.+-..|...|+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344444455555555555444321111246677888888888888888888887763 2 34567788888888888888
Q ss_pred ccccccc--ccccccc
Q 043265 150 LLGEPSS--SLRLSNK 163 (245)
Q Consensus 150 ~~~~~~~--~~~~~~~ 163 (245)
+.|...+ ++++.|+
T Consensus 264 ~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8777666 5555443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.74 E-value=1.5e-07 Score=76.53 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-hHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccC
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-LLEAGKRFEND--GVRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g 79 (245)
.+...+.+.|++++|..+|.++.+..- .+...|..+-..|...| .++.|.+.... ...| +...|..+...+...|
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 345566667777777777777665431 23456666666666666 66666554332 2223 4566777778888888
Q ss_pred cHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++++|.+.|+...+. .| +...+..+...|.+.|++++|...|++.. . +.+...|..+...+...|+.+.|...+
T Consensus 140 ~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 140 EHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp CHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 888888888777552 22 34556667788888888888888887663 2 334667777778888888888777666
Q ss_pred --ccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhc----CCCCCe---EEeeccccccCchhhHH
Q 043265 157 --SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLIS----TPPGRT---LRIKKNLRICGECHNFI 227 (245)
Q Consensus 157 --~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~----~~~~~~---~~l~~~~~~~g~~~~a~ 227 (245)
+++..+........|+.......+-.. ....++...|...+. .-|... ..+-..|.+.|+.+.|.
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHV------CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 555444332221112211111111111 111122222222111 122222 22455567789999999
Q ss_pred HHhhhhcCc
Q 043265 228 KKLSSIENR 236 (245)
Q Consensus 228 ~~~~~~~~~ 236 (245)
+.|++..+.
T Consensus 291 ~~~~~al~~ 299 (330)
T 3hym_B 291 DYFHTALGL 299 (330)
T ss_dssp HHHHTTTTT
T ss_pred HHHHHHHcc
Confidence 999987654
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=5.2e-07 Score=70.22 Aligned_cols=158 Identities=9% Similarity=-0.057 Sum_probs=98.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g 79 (245)
..+-..|.+.|++++|.+.|.+..+.. ..+...+..+...|...|.++.|.+..+.. .+.+...+..+...+.+.|
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 344556667777777777777766543 224566666667777777666665543221 2235566677777777777
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc-
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS- 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~- 156 (245)
++++|.+.+++..+. ...+...+..+...|.+.|++++|...|++.. . +.+..+|..+...+...|+.+.|....
T Consensus 140 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 777777777766542 11245566677777777777777777776653 1 334566666667777777777766555
Q ss_pred -ccccccc
Q 043265 157 -SLRLSNK 163 (245)
Q Consensus 157 -~~~~~~~ 163 (245)
++++.|+
T Consensus 218 ~~~~~~p~ 225 (243)
T 2q7f_A 218 KAIDIQPD 225 (243)
T ss_dssp HHHHHCTT
T ss_pred HHHccCcc
Confidence 4444443
No 18
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.73 E-value=2.9e-07 Score=72.37 Aligned_cols=159 Identities=13% Similarity=-0.029 Sum_probs=121.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC----CCC-cHhhHHHHHHHhc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG----VRP-NWSTFVGVITACG 76 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~----~~p-~~~t~~~ll~~~~ 76 (245)
|..+-..|.+.|++++|.+.|.++.+.+- .+...|..+...|...|.++.|.+..... ..| +...+..+...+.
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 44566788899999999999999877642 36778888888898888888887654332 334 5677888888999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
..|++++|.+.|++..+. . ..+...+..+...|.+.|+.++|...|+... . +.+...|..+...+...|+.+.|..
T Consensus 153 ~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999988663 1 2246778889999999999999999998763 2 3456677777788888888888776
Q ss_pred cc--ccccccc
Q 043265 155 SS--SLRLSNK 163 (245)
Q Consensus 155 ~~--~~~~~~~ 163 (245)
.. +.++.|+
T Consensus 231 ~~~~~~~~~p~ 241 (252)
T 2ho1_A 231 YGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCCC
Confidence 55 5554443
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.70 E-value=2.2e-07 Score=68.93 Aligned_cols=159 Identities=8% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..+.+.|++++|.+.|+++.+.. ..+...+..+...+...|.++.+....+.. .+.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3455677889999999999999987643 246788889999999999888887654332 234678889999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|++++|.+.++..... ...+...+..+..+|.+.|++++|...|++.. .+.+...|..+...+...|+.+.|....
T Consensus 90 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988763 22356788899999999999999999998764 2445778888889999999998887766
Q ss_pred --ccccccc
Q 043265 157 --SLRLSNK 163 (245)
Q Consensus 157 --~~~~~~~ 163 (245)
++++.|+
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 5555443
No 20
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.69 E-value=4.6e-07 Score=69.47 Aligned_cols=158 Identities=7% Similarity=-0.131 Sum_probs=123.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh-hhHHHHHHHHhcC----CCC-cHhhHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL-KLLEAGKRFENDG----VRP-NWSTFVGVITAC 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~~~~~~~~~----~~p-~~~t~~~ll~~~ 75 (245)
|..+...|...|++++|.+.|.+..+.. ..+..++..+...|... |.++.+....+.. ..| +...+..+..++
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 4556778899999999999999998754 23678899999999999 9888887654332 223 367889999999
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-C-CcHHHHHHHHHHHHhCCCCcc
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-D-ASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~-~~~~~~~~li~~~~~~g~~~~ 151 (245)
...|++++|...|++..+. .| +...+..+..+|.+.|+.++|...|+... . + .+...|..+...+...|+.+.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHH
Confidence 9999999999999988663 33 47788899999999999999999998774 2 3 466777777788888888887
Q ss_pred ccccc--ccccccc
Q 043265 152 GEPSS--SLRLSNK 163 (245)
Q Consensus 152 ~~~~~--~~~~~~~ 163 (245)
+.... +.+..|+
T Consensus 201 a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 201 AYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 76555 3344443
No 21
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=1.2e-06 Score=61.04 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=99.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|+.+...|.+.|++++|.++|.++.+.+. .+...|..+...+...|.++.+....+.. .+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56778889999999999999999987642 36778888888888888888876653322 234577888899999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
|++++|.++++++... ...+...+..+...|.+.|+.++|...|+++.
T Consensus 83 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999988663 12356778889999999999999999998763
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.1e-07 Score=72.93 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=123.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CC----c----HhhHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RP----N----WSTFVGV 71 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p----~----~~t~~~l 71 (245)
|..+-..+.+.|++++|.+.|.+..+.. ++...|..+-..|...|.++.|.......+ .| + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4556678889999999999999998887 788899999999999998888876533321 12 2 5788999
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcC-----------------------CCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYD-----------------------INP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~-----------------------~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
-..+...|++++|.+.|+....... ..| +...|..+...|.+.|++++|...|++.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999998865211 333 3566788889999999999999999877
Q ss_pred C--CCCcHHHHHHHHHHHHhCCCCccccccc--ccccc
Q 043265 128 Q--IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 128 ~--~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~ 161 (245)
. .+.+..+|..+-..+...|+.+.|...+ +++..
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4 2445778888888888999988877666 54443
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.66 E-value=2.3e-08 Score=85.67 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=89.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
.+.++.+|++.|++++++++|+ .|+..+|+.+-..|...|.++.|...-... ..|..+..++.+.|++
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccH
Confidence 4567889999999999998885 378889999999999999999998876643 5899999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc--ccc
Q 043265 82 DEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS--SLR 159 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~ 159 (245)
++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+.. ..++..|.+.|.++.+.... +++
T Consensus 165 q~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l--~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 165 QAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL--EELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhH--HHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999999866 167899999999999999999987777666566653 36888999999888875444 555
Q ss_pred cc
Q 043265 160 LS 161 (245)
Q Consensus 160 ~~ 161 (245)
+.
T Consensus 236 le 237 (449)
T 1b89_A 236 LE 237 (449)
T ss_dssp ST
T ss_pred Cc
Confidence 54
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.59 E-value=2.4e-07 Score=76.79 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=102.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g 79 (245)
..+-..|.+.|++++|...|.++.+.. +.+..+|..+...|.+.|.++.|....+.. -+.+..++..+...|...|
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 344566677777777777777776653 235566677777777777666665542221 1235566666666666666
Q ss_pred cHHHHHHHHHHhhhhcC----------------------------------------------CCc---chHHHHHHHHH
Q 043265 80 AVDEGFQHFESVTRDYD----------------------------------------------INP---TLEHFLGIVDL 110 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~----------------------------------------------~~p---~~~~~~~li~~ 110 (245)
++++|.+.|+.+..... ..| +..++..+..+
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 66666666665533110 122 36677788888
Q ss_pred HhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc--cccccc
Q 043265 111 YGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 111 y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
|.+.|++++|...|++.. . +.+..+|..+...+...|+.+.|...+ ++++.|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888888888888887763 2 335677888888888888888877666 555443
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.57 E-value=2e-06 Score=69.82 Aligned_cols=158 Identities=7% Similarity=-0.126 Sum_probs=91.4
Q ss_pred hHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc
Q 043265 3 NSELKHLCRER-EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 3 n~ll~~~~~~g-~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~ 78 (245)
..+-..|...| ++++|.+.|.+.....- .+...|..+...+...|.++.|.+..... ..| +...+..+...|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34455666667 77777777777665431 23456666777777777666665543221 112 344555566666667
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C----------CCcHHHHHHHHHHHHhCC
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I----------DASSVVWETLEKYAQTEP 147 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~----------~~~~~~~~~li~~~~~~g 147 (245)
|++++|.+.+++..+. ...+...+..+...|.+.|++++|...|++.. . ..+..+|..+-..+...|
T Consensus 173 ~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 7777777777666431 11234566666667777777777766665442 0 222456666666666666
Q ss_pred CCccccccc--ccccccc
Q 043265 148 GLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 148 ~~~~~~~~~--~~~~~~~ 163 (245)
+.+.|...+ ++++.|+
T Consensus 251 ~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhhCcc
Confidence 666666555 4444444
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.57 E-value=2.5e-06 Score=63.79 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=125.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CC-CCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GV-RPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~-~p~~~t~~~ll~~~~~~ 78 (245)
|..+=..|.+.|++++|++.|++..+.+- -+...|..+-..|.+.|.++.+...... .. +-+...+..+-..+...
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence 44555778899999999999999887642 2578889999999999988888765332 22 33566777777888999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
++++.|.+.+...... .| +...+..+-.+|.+.|++++|...|++.. ..| +...|..+-..+...|+.+.|...
T Consensus 87 ~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 87 DEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999987652 33 46778899999999999999999998774 344 567788888999999999998877
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
+ ++++.|+.
T Consensus 164 ~~~al~~~p~~ 174 (184)
T 3vtx_A 164 FKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHhCCccC
Confidence 7 77766643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.55 E-value=3e-07 Score=76.47 Aligned_cols=161 Identities=11% Similarity=-0.030 Sum_probs=118.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC---cHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIF---------LDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP---NWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~---------p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p---~~~t 67 (245)
|+.+...|.+.|++++|.+.|.++.+.+-. .....+..+...|.+.|.++.|.+..+.. ..| +..+
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 566778899999999999999998764310 01233344567788888888887653331 223 6889
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHh
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQT 145 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~ 145 (245)
+..+...|.+.|++++|.+.|++..+. ...+..+|..+..+|.+.|++++|...|++.. ..| +..+|..+-..|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 999999999999999999999998663 12357789999999999999999999998774 344 47888888899999
Q ss_pred CCCCccccccc--cccccccc
Q 043265 146 EPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 146 ~g~~~~~~~~~--~~~~~~~~ 164 (245)
.|+.+.|...+ ++++.|+.
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCccc
Confidence 99999988777 77766654
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2e-07 Score=80.72 Aligned_cols=222 Identities=10% Similarity=-0.000 Sum_probs=153.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--C-CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--G-VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~-~~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..|.+.|++++|.+.|.++.+.+ |+...|..+...|...|.++.+...... . .+.+...+..+...|...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999998765 4488888999999998887777665333 2 233677899999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|++++|...|+...+. ...+...+..+...|.+.|++++|...|+... . +.+..+|..+-..+...|+.+.|....
T Consensus 318 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999988652 12256788999999999999999999998774 2 345678888889999999999887766
Q ss_pred --ccccccccccCCcccccccccccCchhhhhcccccc---hHHHHHHHHhhcC----CCCCe---EEeeccccccCchh
Q 043265 157 --SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYR---SERLAVAYGLIST----PPGRT---LRIKKNLRICGECH 224 (245)
Q Consensus 157 --~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~a~~l~~~----~~~~~---~~l~~~~~~~g~~~ 224 (245)
+++..|+.......... +.. ....... .+....|...+.. .|... ..+-..|.+.|+.+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~--~~~-------l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAP--LVG-------KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHH--HHH-------HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhccchHHHHHHH--HHH-------HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 55555444111100001 000 0001112 2333333332221 22222 23556677889999
Q ss_pred hHHHHhhhhcCc
Q 043265 225 NFIKKLSSIENR 236 (245)
Q Consensus 225 ~a~~~~~~~~~~ 236 (245)
.|...|++..+.
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999876553
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.54 E-value=1.4e-08 Score=82.07 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=121.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc----------C-CCC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI-------GIFLDSPDIIELLNVCMDLKLLEAGKRFEND----------G-VRP 63 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~----------~-~~p 63 (245)
|..+-..|...|++++|..+|.++.+. ........+..+-..|...|.++.|...... + .+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 556778899999999999999998763 2223456788888888888888887664222 2 223
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc-----CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-------
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDY-----DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I------- 129 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~------- 129 (245)
...++..+...|...|++++|.+.|++..+.. +-.| ....+..+-..|.+.|++++|...|++.. .
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46788999999999999999999999886521 2223 45678889999999999999999987663 1
Q ss_pred -CCc-HHHHHHHHHHHHhCCCCccccccc--cccccc
Q 043265 130 -DAS-SVVWETLEKYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 130 -~~~-~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
.|+ ..+|..+-..+...|+.+.|...+ ++++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 232 456777778999999999987776 555433
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.54 E-value=7.2e-07 Score=72.68 Aligned_cols=150 Identities=9% Similarity=-0.041 Sum_probs=107.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDS--PDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
|+..-..|++++|+..+++.... .|+. .....+.++|...|.++.+..-.+..-+|+..++..+...+...|+.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHH
Confidence 44556678888888887765432 3433 3445667788888888887755444566778888888888888888888
Q ss_pred HHHHHHHhhhhcCCCcch-HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc--cccc
Q 043265 84 GFQHFESVTRDYDINPTL-EHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS--SLRL 160 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~-~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~ 160 (245)
|.+.++++.. .+..|+. ..+..+-.+|.+.|++++|.+.+++ ..+...+..+...+...|+.+.|...+ +++.
T Consensus 84 A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 8888888765 3555643 4455556888888888888888887 446667777778888888888877665 4444
Q ss_pred c
Q 043265 161 S 161 (245)
Q Consensus 161 ~ 161 (245)
.
T Consensus 160 ~ 160 (291)
T 3mkr_A 160 D 160 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.53 E-value=5.6e-07 Score=70.02 Aligned_cols=152 Identities=13% Similarity=0.035 Sum_probs=109.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..+.+.|++++|..+|++..+.. ..+...+..+...|...|.++.+....+.. .+.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 4455567888999999999999998743 236788888999999999888887654332 233678889999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
|++++|.+++++..+. ...+...+..+...|.+.|++++|...+++.. . +.+...|..+...+...|+.+.|...+
T Consensus 105 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988763 22356788899999999999999999998774 2 446778888888999999998877665
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.3e-06 Score=68.36 Aligned_cols=158 Identities=9% Similarity=-0.001 Sum_probs=121.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHhhhhhhHHHHHHHHhcC---------------
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIG--IFLD----SPDIIELLNVCMDLKLLEAGKRFENDG--------------- 60 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g--~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~~~--------------- 60 (245)
|..+-..|.+.|++++|.+.|.+..+.. ..|+ ..+|..+-..|...|.++.|.......
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 120 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhH
Confidence 4556678889999999999999987542 1223 578888888888888888776542221
Q ss_pred -------------CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 61 -------------VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 61 -------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
..| +...+..+...+...|++++|.+.|+..... ...+...|..+..+|.+.|++++|...|+.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 223 4567888889999999999999999998763 123567899999999999999999999987
Q ss_pred cC-C-CCcHHHHHHHHHHHHhCCCCccccccc--ccccc
Q 043265 127 MQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 127 m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~ 161 (245)
.. . +.+...|..+-..+...|+.+.|.... ++++.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 74 2 345778888889999999998887666 55554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.47 E-value=1e-05 Score=62.65 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=83.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc---
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF--- 78 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~--- 78 (245)
+-..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|.++.|....+.. ..| +...+..+-..+...
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 3345556666666666666655432 123555555556666666665555443321 223 344555555555555
Q ss_pred --------CcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCC
Q 043265 79 --------GAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 79 --------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~ 148 (245)
|++++|...|+...+ +.|+ ...|..+-.+|...|++++|...|++.- ...+...|..+-..+...|+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGR 166 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred hhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Confidence 666666666665543 2332 3455555566666666666666665442 11445555555555666666
Q ss_pred Cccccccc--cccccccc
Q 043265 149 LLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 149 ~~~~~~~~--~~~~~~~~ 164 (245)
.+.|...+ ++++.|+.
T Consensus 167 ~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 66555544 55554443
No 34
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.46 E-value=1.9e-06 Score=70.48 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=120.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHhhhhhhHHHHHHHHhcCCC--C-cHhhHHHHHHHh-
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLD-SP-DIIELLNVCMDLKLLEAGKRFENDGVR--P-NWSTFVGVITAC- 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~--p-~~~t~~~ll~~~- 75 (245)
|..+...+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|.++.|.......+. | +...|.......
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556777888999999999999999874 454 33 799999999999999998876554332 3 344444333332
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC----CCC--cHHHHHHHHHHHHhCCCC
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ----IDA--SSVVWETLEKYAQTEPGL 149 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~~~--~~~~~~~li~~~~~~g~~ 149 (245)
...|+.++|.++|+...+..+ -+...|..+++.+.+.|+.++|..+|++.- +.| ....|..++......|+.
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 236999999999998865322 256788999999999999999999998774 244 367899999999999999
Q ss_pred ccccccc--cccccccc
Q 043265 150 LLGEPSS--SLRLSNKK 164 (245)
Q Consensus 150 ~~~~~~~--~~~~~~~~ 164 (245)
+.+..+. +++..|+.
T Consensus 258 ~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 258 ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 8887776 77777754
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.46 E-value=1.1e-06 Score=72.89 Aligned_cols=159 Identities=10% Similarity=0.009 Sum_probs=117.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc----------------------
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND---------------------- 59 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---------------------- 59 (245)
|..+-..|.+.|++++|.+.|.++.+.+ +.+..++..+...|...|.++.|......
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh
Confidence 3455566777777777777777776653 23566677777777666665555433110
Q ss_pred -----------------------------CCCC---cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHH
Q 043265 60 -----------------------------GVRP---NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLG 106 (245)
Q Consensus 60 -----------------------------~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 106 (245)
...| +..++..+...|.+.|++++|...|++.... .| +...|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 256 (368)
T 1fch_A 180 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNK 256 (368)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHH
Confidence 1123 4788999999999999999999999988652 34 4678999
Q ss_pred HHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 107 IVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 107 li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
+...|.+.|++++|...|++.. . +.+...|..+-..|...|+.+.|...+ ++++.|+.
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998874 3 345778888889999999999988776 66655544
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.43 E-value=8.6e-06 Score=65.95 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc--ccccccc
Q 043265 100 TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 100 ~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
+...+..+...|.+.|++++|...|++.. . +.+..+|..+...+...|+.+.|...+ +++..|+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34555666666666666666666665542 1 223455555556666666666555544 4444443
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.40 E-value=1.7e-06 Score=75.33 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=153.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~ 80 (245)
.+-..+...|++++|.+.|.+..+. .|+...|..+-..|...|.++.+....... .+.+..+|..+...+...|+
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 3446778889999999999999876 466888999999999999888887654332 23357889999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCccccccc-
Q 043265 81 VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPSS- 156 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~~- 156 (245)
+++|.+.|+...+. .| +...|..+..+|.+.|++++|...|++.. . +.+...|..+-..+...|+.+.|...+
T Consensus 326 ~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 326 YKNAKEDFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988763 23 45788999999999999999999998774 2 345678888889999999999988776
Q ss_pred -ccccccccccCCcccccccccccCchhhhhcccccch----------HHHHHHHHhhcC----CCCCe---EEeecccc
Q 043265 157 -SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRS----------ERLAVAYGLIST----PPGRT---LRIKKNLR 218 (245)
Q Consensus 157 -~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~----------~~l~~a~~l~~~----~~~~~---~~l~~~~~ 218 (245)
++++.|+... . ...+............. ++...|...+.. -|... ..+-..|.
T Consensus 403 ~a~~~~~~~~~------~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 403 IAKRLEEVQEK------I---HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHCSS------C---SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcchh------h---HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6655544311 1 11110000000001111 444444443332 23222 23556677
Q ss_pred ccCchhhHHHHhhhhcCc
Q 043265 219 ICGECHNFIKKLSSIENR 236 (245)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~ 236 (245)
+.|+.+.|.+.|++..+.
T Consensus 474 ~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 889999999999886553
No 38
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.38 E-value=4.8e-07 Score=71.72 Aligned_cols=225 Identities=11% Similarity=-0.022 Sum_probs=132.4
Q ss_pred HcCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc----------CC-CCcHhhHHHHH
Q 043265 11 REREVKAALEVMDKLKN-------IGIFLDSPDIIELLNVCMDLKLLEAGKRFEND----------GV-RPNWSTFVGVI 72 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~----------~~-~p~~~t~~~ll 72 (245)
..|++++|+++|++..+ .+-.....++..+-..|...|.++.|...... +- +....++..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34666666666666543 22223466788888888888888887664222 22 23467889999
Q ss_pred HHhcccCcHHHHHHHHHHhhhhc-----CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C--------CCc-HHHH
Q 043265 73 TACGCFGAVDEGFQHFESVTRDY-----DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I--------DAS-SVVW 136 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~--------~~~-~~~~ 136 (245)
..|...|++++|.+.|.+..... .-.| ....|..+-..|...|++++|...|++.. . .|+ ..+|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999876521 1123 46778899999999999999999887663 1 232 4567
Q ss_pred HHHHHHHHhCCCCccccccc--ccccccccccCCcccccccccccCchhhhhcccccchHHHHHHHHhhcCCCCC-e---
Q 043265 137 ETLEKYAQTEPGLLLGEPSS--SLRLSNKKKDAGYMPYTEYVLRDLDQEAKEKPQTYRSERLAVAYGLISTPPGR-T--- 210 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~a~~l~~~~~~~-~--- 210 (245)
..+-..+...|+.+.|.... ++++.++.......+....+...+..................+.......... +
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 77778899999999887776 55554433111122222222111111111111111111111121222111111 0
Q ss_pred ---EEeeccccccCchhhHHHHhhhhcC
Q 043265 211 ---LRIKKNLRICGECHNFIKKLSSIEN 235 (245)
Q Consensus 211 ---~~l~~~~~~~g~~~~a~~~~~~~~~ 235 (245)
..+-..|...|+.+.|.++|++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1245567788999999999987643
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.38 E-value=6.2e-06 Score=67.54 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
-..+...|++++|.++|+++.+.. +.+...+..+...|...|.++.|....... .+.+..++..+...+...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555566666666666555432 123455555555555555555554432221 1224455555555555555555
Q ss_pred HHHHHHHHhh
Q 043265 83 EGFQHFESVT 92 (245)
Q Consensus 83 ~a~~~~~~m~ 92 (245)
+|.+.|+...
T Consensus 206 ~A~~~~~~a~ 215 (359)
T 3ieg_A 206 LSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.7e-06 Score=72.63 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~ 80 (245)
.+...|.+.|++++|.+.|.+..+.+- .+...+..+...|.+.|.++.+....... .+.+..++..+...+.+.|+
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC
Confidence 344445555555555555555544321 13344555555555555555444332211 11234445555555555555
Q ss_pred HHHHHHHHHHhhhhcCCCcc----hHHHHHHHHHHhc---cCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCcc
Q 043265 81 VDEGFQHFESVTRDYDINPT----LEHFLGIVDLYGR---LQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~y~~---~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+++|...++.+.....-.|+ ...|..+..+|.+ .|++++|...|+... . +.+..+|..+-..+...|+.+.
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 55555555544331111111 2245555555555 555555555555442 1 2234444444455555555555
Q ss_pred ccccc
Q 043265 152 GEPSS 156 (245)
Q Consensus 152 ~~~~~ 156 (245)
|...+
T Consensus 468 A~~~~ 472 (514)
T 2gw1_A 468 AITLF 472 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.34 E-value=1.6e-05 Score=64.99 Aligned_cols=154 Identities=8% Similarity=-0.042 Sum_probs=76.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC----cHhhHHHH---------
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP----NWSTFVGV--------- 71 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p----~~~t~~~l--------- 71 (245)
..|.+.|++++|.+.|.+..+.. +-+...|..+-..|...|.++.|....+. ...| +...+..+
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence 34444555555555555544332 11334445555555555555554443222 2223 22222222
Q ss_pred ---HHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhC
Q 043265 72 ---ITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTE 146 (245)
Q Consensus 72 ---l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~ 146 (245)
...+...|++++|.++++...+. ...+...+..+...|.+.|++++|...|++.. . +.+..+|..+-..+...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555566666666666655432 11234555666666666666666666666552 2 23455555555666666
Q ss_pred CCCccccccc--ccccccc
Q 043265 147 PGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 147 g~~~~~~~~~--~~~~~~~ 163 (245)
|+.+.|...+ +++..|+
T Consensus 202 ~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhhCcc
Confidence 6666655544 4444333
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.34 E-value=1.9e-06 Score=69.88 Aligned_cols=145 Identities=6% Similarity=-0.015 Sum_probs=117.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHHHH
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
+...|++++|.+.|.++.+..- .+...+..+...|.+.|.++.|.+..+.. .+.+..++..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 6677889999999999987642 36788999999999999999887754432 2335788999999999999999999
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-------------cHHHHHHHHHHHHhCCCCcc
Q 043265 86 QHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-------------SSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 86 ~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-------------~~~~~~~li~~~~~~g~~~~ 151 (245)
+.|++..+. ...+...|..+..+|.+.|++++|...|++.. ..| +..+|..+..++...|+.+.
T Consensus 227 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 227 DAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 999988652 12256788999999999999999999998763 223 46788888899999999988
Q ss_pred ccccc
Q 043265 152 GEPSS 156 (245)
Q Consensus 152 ~~~~~ 156 (245)
|....
T Consensus 305 A~~~~ 309 (327)
T 3cv0_A 305 VELTY 309 (327)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77655
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.32 E-value=1.7e-05 Score=61.37 Aligned_cols=149 Identities=13% Similarity=0.002 Sum_probs=113.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh-----------hhHHHHHHHHhcC--CCC-cHhhH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL-----------KLLEAGKRFENDG--VRP-NWSTF 68 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~-----------~~~~~~~~~~~~~--~~p-~~~t~ 68 (245)
..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+.+. |.++.|....+.. ..| +...+
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 445567889999999999999998764 23567888888999999 9999987764443 345 46788
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhC
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTE 146 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~ 146 (245)
..+-..+...|++++|...|++..+ .. .+...+..+-.+|...|++++|...|++.- ..| +...+..+-..+...
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 8888999999999999999999877 45 678889999999999999999999998874 344 567788888888898
Q ss_pred CCCcccccc
Q 043265 147 PGLLLGEPS 155 (245)
Q Consensus 147 g~~~~~~~~ 155 (245)
|+.+.|...
T Consensus 199 g~~~~A~~~ 207 (217)
T 2pl2_A 199 GKAEEAARA 207 (217)
T ss_dssp ---------
T ss_pred cCHHHHHHH
Confidence 988886543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.30 E-value=9.8e-06 Score=64.06 Aligned_cols=120 Identities=10% Similarity=-0.151 Sum_probs=76.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p-~~~t~~~ll~~~~~~ 78 (245)
|..+-..|...|++++|.+.|.+..+.+- .+..+|..+-..|...|.++.|....+..+ .| +...+..+...|.+.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 34555667777888888888887766532 256777777777777777777766533321 23 466777777777778
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
|++++|.+.|+.+.+ ..|+.......+..+.+.|+.++|...|.
T Consensus 125 g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888877777754 23444444444444455566666666663
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.29 E-value=4.3e-05 Score=56.18 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=101.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+...|.+.|++++|.+.|++..+.. ..+...|..+...+...|.++.+.+..+.. .+.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc
Confidence 4556778899999999999999998763 346788888999999999988887654332 345678889999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
|++++|.+.+++..+. ...+...+..+...|.+.|+.++|...|+...
T Consensus 124 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 124 GRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999998763 12356788999999999999999999998763
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.27 E-value=7.6e-06 Score=56.88 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHh
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYG 112 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~ 112 (245)
.|..+...+...|.++.+....+.. .+.+...+..+...+...|++++|..+|+++... . ..+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 5677778888888888887653332 2346778888999999999999999999998763 2 235677889999999
Q ss_pred ccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 113 RLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 113 ~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+.|++++|...|+.+. .+.+..+|..+...+...|+.+.|...+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999999999998774 2345778888889999999988876655
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.27 E-value=2.3e-05 Score=60.57 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=108.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~ 81 (245)
.=..+.+.|++++|.+.|.+..+..-.++...+..+-.++.+.|.++.|.+.... ...| +...|..+-..|...|++
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH
Confidence 3456788999999999999998876546777777788888888999888775433 2344 567888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcc-h-------HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHhCCC
Q 043265 82 DEGFQHFESVTRDYDINPT-L-------EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS---SVVWETLEKYAQTEPG 148 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~---~~~~~~li~~~~~~g~ 148 (245)
++|.+.|++..+. .|+ . ..|..+=..+.+.|++++|...|++.- ..|+ ...|..+-..+...|.
T Consensus 93 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 93 QEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999988663 343 3 457778888999999999999998875 5666 3555555566655443
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.26 E-value=2e-06 Score=69.18 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=95.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc----------CCCC-
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI------GIFL-DSPDIIELLNVCMDLKLLEAGKRFEND----------GVRP- 63 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~----------~~~p- 63 (245)
++.+-..|...|++++|.+.|.+.... +-.| ...++..+-..|...|.++.|...... +-.|
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 456677889999999999999998754 2222 356788888888888888887664222 2223
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc-----CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDY-----DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
....+..+-..+...|++++|.++|+...... +-.| ...++..+..+|.+.|++++|...|++.
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678889999999999999999999886520 2233 3467889999999999999999988755
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.26 E-value=1.7e-05 Score=62.64 Aligned_cols=156 Identities=12% Similarity=0.033 Sum_probs=115.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCCcH----hhHHHHHHHhccc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRPNW----STFVGVITACGCF 78 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p~~----~t~~~ll~~~~~~ 78 (245)
.-..+.+.|++++|++.|.+..+..- .+...|..+...|.+.|.++.|....... ..++. .+|..+-..+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 34677889999999999999987642 23447888888999999888886653322 12333 3488999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++++|.+.|+...+. .| +...|..+-..|.+.|++++|...|++.- ..| +...|..+-..+...++.+.|...
T Consensus 88 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988663 23 45789999999999999999999998875 344 455566555244455677777766
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
+ ++++.|+.
T Consensus 165 ~~~a~~~~p~~ 175 (272)
T 3u4t_A 165 FVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhCccc
Confidence 6 66655543
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.24 E-value=2e-05 Score=72.18 Aligned_cols=158 Identities=12% Similarity=0.092 Sum_probs=129.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-HhhHHHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-WSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~~t~~~ll~~~~~ 77 (245)
|+.|=..|.+.|++++|++.|++..+.. | +...|..+-.+|.+.|.+++|.+..+. .+.|+ ...|..+-.+|..
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5566678999999999999999988753 4 478899999999999999998776443 34554 7889999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCCCccccc
Q 043265 78 FGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~~~~ 154 (245)
.|++++|.+.|++..+ +.|+ ...|+.+-.+|.+.|++++|...|++.- +.|+ ...|..+...+...|+++.|..
T Consensus 90 ~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 9999999999998765 3454 6789999999999999999999998763 4554 6788888899999999999877
Q ss_pred cc--cccccccc
Q 043265 155 SS--SLRLSNKK 164 (245)
Q Consensus 155 ~~--~~~~~~~~ 164 (245)
.. ++++.++.
T Consensus 167 ~~~kal~l~~~~ 178 (723)
T 4gyw_A 167 RMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhChhH
Confidence 66 66665554
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.20 E-value=5.7e-06 Score=65.43 Aligned_cols=143 Identities=11% Similarity=-0.054 Sum_probs=111.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhcccCcHHHH
Q 043265 11 REREVKAALEVMDKLKNIGIF--L-DSPDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~g~~~~a 84 (245)
..|++++|++.|+++.+.... | +..+|..+-..|...|.++.|....+.. . +.+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457899999999999876431 1 4677888888899999998887764432 2 33588999999999999999999
Q ss_pred HHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 85 FQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
.+.|+...+. .| +...|..+..+|.+.|++++|...|++.. ..|+...+...+..+...|+.+.|....
T Consensus 97 ~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 97 YEAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999988762 33 56789999999999999999999998874 4566555555555556667777766555
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.17 E-value=1.5e-05 Score=69.32 Aligned_cols=156 Identities=9% Similarity=-0.048 Sum_probs=116.6
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHhhHHHHHHHhccc---
Q 043265 5 ELKHLCREREV-KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWSTFVGVITACGCF--- 78 (245)
Q Consensus 5 ll~~~~~~g~~-~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~t~~~ll~~~~~~--- 78 (245)
+=..|...|++ ++|++.|.+..+..- -+...|..+-..|.+.|.++.|.+..+. ...|+...+..+-..|...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccC
Confidence 33556677888 889998888876531 2467888888888888888888765332 4567778888888888888
Q ss_pred ------CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhcc--------CCHHHHHHHHHhcC-CCC----cHHHHHH
Q 043265 79 ------GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRL--------QKIAEAREFIRNMQ-IDA----SSVVWET 138 (245)
Q Consensus 79 ------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~--------g~~~~a~~~~~~m~-~~~----~~~~~~~ 138 (245)
|++++|.+.|++..+ +.| +...|..+-.+|.+. |++++|...|++.. ..| +...|..
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 263 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 888889888888765 234 466778888888887 88888888887764 345 5677777
Q ss_pred HHHHHHhCCCCccccccc--cccccccc
Q 043265 139 LEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 139 li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
+-.+|...|+.+.|...+ ++++.|+.
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 778888888888887776 66666554
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.11 E-value=1.2e-05 Score=63.56 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=96.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhcC-----------CCC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI------GIFL-DSPDIIELLNVCMDLKLLEAGKRFENDG-----------VRP 63 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~-----------~~p 63 (245)
|+.+-..|...|++++|++.|.+..+. +-.| ...+|..+-..|...|.++.|....... .+.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 456678889999999999999998754 2223 3567888888899999888886652221 123
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc-----CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDY-----DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...++..+-..|...|++++|.++|++..... +-.| ...++..+-.+|.+.|++++|...|++.
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999999999886520 1133 3567889999999999999999988654
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.09 E-value=2.9e-05 Score=68.14 Aligned_cols=158 Identities=10% Similarity=0.086 Sum_probs=119.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-H-HHHHHHHHHhhhhhhHHHHHHHHhcCC--CCc-HhhHHHHHH-Hh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLD-S-PDIIELLNVCMDLKLLEAGKRFENDGV--RPN-WSTFVGVIT-AC 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~-~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~-~~t~~~ll~-~~ 75 (245)
|..+...+.+.|++++|.++|++..+. .|+ . ..|..+...+.+.|.++.|.++....+ .|+ ...|..... .+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677888999999999999999884 454 2 589999998889999999988755433 332 222322221 23
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC----CCCc--HHHHHHHHHHHHhCCC
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ----IDAS--SVVWETLEKYAQTEPG 148 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~~~~--~~~~~~li~~~~~~g~ 148 (245)
...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++.- ..|+ ...|...+.....+|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999987653 24 46789999999999999999999998763 2232 4589999999999999
Q ss_pred Cccccccc--cccccccc
Q 043265 149 LLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 149 ~~~~~~~~--~~~~~~~~ 164 (245)
.+.+..+. +++..|+.
T Consensus 479 ~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 479 LASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCchh
Confidence 99888777 66776643
No 55
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.00 E-value=0.00017 Score=54.83 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=96.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC---CCcHhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV---RPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~---~p~~~t~~~ll~~~~~~g~~ 81 (245)
+-..+.+.|++++|.+.|.+. +.|+...|..+-..|.+.|.++.|.......+ +.+...|..+-.+|...|++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 345677889999999999877 46788899999999999998888876543322 34577888899999999999
Q ss_pred HHHHHHHHHhhhhcC-------------CCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 82 DEGFQHFESVTRDYD-------------INP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~-------------~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
++|.+.|+...+... ..| ....+..+-.+|.+.|++++|...|+... ..|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999998865211 112 22677888999999999999999998763 4554
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.99 E-value=6.7e-05 Score=65.19 Aligned_cols=146 Identities=10% Similarity=0.022 Sum_probs=115.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh---------hhHHHHHHHHhcC--CCC-cHhhHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL---------KLLEAGKRFENDG--VRP-NWSTFV 69 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~~~~~~~~~--~~p-~~~t~~ 69 (245)
|+.+-..|.+.|++++|.+.|++..+.. |+...+..+-..|... |.+++|.+..+.. ..| +...|.
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 217 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4566778999999999999999998764 7788899999999998 9998887764432 234 578889
Q ss_pred HHHHHhccc--------CcHHHHHHHHHHhhhhcCCCc----chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHH
Q 043265 70 GVITACGCF--------GAVDEGFQHFESVTRDYDINP----TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVV 135 (245)
Q Consensus 70 ~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~ 135 (245)
.+-.+|... |++++|.+.|+...+ +.| +...|..+-.+|.+.|++++|...|++.. ..|+ ...
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999888 999999999998866 245 67889999999999999999999998763 3444 555
Q ss_pred HHHHHHHHHhCCCCccc
Q 043265 136 WETLEKYAQTEPGLLLG 152 (245)
Q Consensus 136 ~~~li~~~~~~g~~~~~ 152 (245)
|..+-..+...|+.+.+
T Consensus 295 ~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555443
No 57
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.97 E-value=3.1e-05 Score=62.73 Aligned_cols=163 Identities=7% Similarity=-0.077 Sum_probs=112.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcCC--------CC-cHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFLD-SPDIIELLNVCMDLKLLEAGKRFENDGV--------RP-NWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~--------~p-~~~t 67 (245)
|+-....|...|++++|.+.|.+.... |-.++ ..+|+.+-.+|.+.|.++.|.......+ .+ -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344556788899999999999987543 32222 4688888899988888888766432211 11 1457
Q ss_pred HHHHHHHhccc-CcHHHHHHHHHHhhhhc---CCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH--------
Q 043265 68 FVGVITACGCF-GAVDEGFQHFESVTRDY---DINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS-------- 133 (245)
Q Consensus 68 ~~~ll~~~~~~-g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~-------- 133 (245)
++.+-..|... |++++|...|++..+-. +-.+. ..+|..+-..|.+.|++++|...|++.. ..|+.
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88888899996 99999999998775411 10011 3568889999999999999999998763 23321
Q ss_pred HHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 134 VVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 134 ~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..|..+-..+...|+.+.|...+ ++++.|..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 14566666777889988887766 66655543
No 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.96 E-value=9.1e-05 Score=64.36 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=46.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~ 83 (245)
..|.+.|++++|.+.|.+..+..- .+..+|..+-..|...|.++.|....+.. ..| +...|..+...+...|++++
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444443321 12344444444444444444443322111 111 23344444444444444444
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 84 GFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
|.++|++..+. ...+...+..+...|.+.|++++|...|+
T Consensus 363 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 363 SEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44444444331 01122334444444444444444444443
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.92 E-value=0.00025 Score=57.70 Aligned_cols=143 Identities=6% Similarity=-0.069 Sum_probs=108.4
Q ss_pred HcCCH-------HHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcH-h-hHHHHHHHhccc
Q 043265 11 REREV-------KAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--GVRPNW-S-TFVGVITACGCF 78 (245)
Q Consensus 11 ~~g~~-------~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~-~-t~~~ll~~~~~~ 78 (245)
+.|++ ++|..+|++..+. +.| +...|..+...+.+.|.++.|....+. .+.|+. . .|..+...+.+.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 45876 8999999998873 234 466899999999999999988876444 355653 3 799999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHH-hccCCHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLY-GRLQKIAEAREFIRNMQ-I-DASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y-~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++++|..+|+...+.. .++...|....... ...|+.++|..+|++.- . +.+...|..++..+...|+.+.|..+
T Consensus 148 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999886521 12344454443332 23699999999998773 2 33678899999999999999988776
Q ss_pred c
Q 043265 156 S 156 (245)
Q Consensus 156 ~ 156 (245)
+
T Consensus 226 ~ 226 (308)
T 2ond_A 226 F 226 (308)
T ss_dssp H
T ss_pred H
Confidence 6
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.84 E-value=0.00063 Score=50.39 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=99.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CC-CCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GV-RPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~-~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..|.+.|++++|.+.+........ -+...+..+-..+...+.++.+...... .. +-+...+..+-..+.+.
T Consensus 42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 42 LLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM 120 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh
Confidence 44566788999999999999999877643 2456666676777777777777665332 22 33577888899999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHH
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSV 134 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~ 134 (245)
|++++|.+.|++..+. .| +...|..+-.+|.+.|+.++|...|++.- ..|+..
T Consensus 121 g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred CCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999988662 34 46788999999999999999999998763 456543
No 61
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.83 E-value=0.00047 Score=49.79 Aligned_cols=125 Identities=5% Similarity=-0.017 Sum_probs=86.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..+.+.|++++|...|.+..+.. ..+...|..+-..+...|.++.+....... .+.+...|..+-.++.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3445567788899999999999987653 235677888888888888888776653332 233567788888888889
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
|++++|...|++..+...-.+....+-.+...+.+.|++++|...+...
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999998887653222222222234445577788888888877654
No 62
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.80 E-value=0.00038 Score=56.95 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-----cHhhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 18 ALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP-----NWSTFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 18 A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
|+..|++....+ .++..++..+-.++...|.+++|.+....++.+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444333 233333344444444445555554443333222 2333444444555555555555555544
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.79 E-value=0.00028 Score=61.83 Aligned_cols=146 Identities=8% Similarity=-0.082 Sum_probs=108.0
Q ss_pred cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc-H-hhHHHHHHHhcccCc
Q 043265 12 EREVK-------AALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN-W-STFVGVITACGCFGA 80 (245)
Q Consensus 12 ~g~~~-------~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~-~-~t~~~ll~~~~~~g~ 80 (245)
.|+++ +|..+|++..+.-.+-+...|..+...+.+.|.++.+..+.+. .+.|+ . ..|......+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68877 8999999987632223588899999999999999988776443 34564 2 479999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcc-hHHHHHHHH-HHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCccccccc
Q 043265 81 VDEGFQHFESVTRDYDINPT-LEHFLGIVD-LYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~-~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+++|.++|+...+. .|+ ...|-.... .|...|+.++|..+|+..- ..| +...|..++......|+.+.|..++
T Consensus 372 ~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999988663 232 222222222 2346899999999998653 234 5789999999999999999888776
Q ss_pred --cccc
Q 043265 157 --SLRL 160 (245)
Q Consensus 157 --~~~~ 160 (245)
++..
T Consensus 449 ~~al~~ 454 (530)
T 2ooe_A 449 ERVLTS 454 (530)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 4443
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00056 Score=54.18 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=95.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh----hhhHHHHHHHHhcCCC-CcHhhHHHHHHHhcc--
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMD----LKLLEAGKRFENDGVR-PNWSTFVGVITACGC-- 77 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~-p~~~t~~~ll~~~~~-- 77 (245)
+=..|.+.|++++|.+.|.+..+.+ +...+..+-..|.. .++++.|....+..+. -+...+..+-..|..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCC
Confidence 3456677788888888888887743 44566667777777 6666666554222111 156677777777777
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhc----cCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----CC
Q 043265 78 --FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGR----LQKIAEAREFIRNMQIDASSVVWETLEKYAQT----EP 147 (245)
Q Consensus 78 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~----~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~----~g 147 (245)
.+++++|.+.|+...+ .+ +...+..+-..|.+ .|+.++|...|++.-...+...+..+-..+.. .+
T Consensus 89 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCC
Confidence 8888888888887765 33 56677777788887 88888888888765312244555555555655 56
Q ss_pred CCccccccc
Q 043265 148 GLLLGEPSS 156 (245)
Q Consensus 148 ~~~~~~~~~ 156 (245)
+.+.|...+
T Consensus 165 ~~~~A~~~~ 173 (273)
T 1ouv_A 165 DLKKALASY 173 (273)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666655444
No 65
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.77 E-value=0.0004 Score=52.68 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=100.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCC
Q 043265 37 IIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQK 116 (245)
Q Consensus 37 ~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~ 116 (245)
+..+-..+...|.++.|.......+.|+...|..+-..|.+.|++++|.+.|+...+. . ..+...|..+-.+|.+.|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccchHHHHHHHHHHHHccc
Confidence 4445556677899999998888888999999999999999999999999999988652 1 2356788899999999999
Q ss_pred HHHHHHHHHhcC-CCCc-----------------HHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 117 IAEAREFIRNMQ-IDAS-----------------SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 117 ~~~a~~~~~~m~-~~~~-----------------~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
+++|...|++.. ..|+ ...|..+-.++...|+.+.|...+ ++++.|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999998763 2221 266777778889999999888777 66666544
No 66
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.76 E-value=0.001 Score=45.15 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLY 111 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y 111 (245)
..|..+...+...|.++.+.+..... .+.+..++..+...+.+.|++++|..+|+.+... ...+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444444444443332111 1224556666777777778888888887777552 122456677777888
Q ss_pred hccCCHHHHHHHHHhc
Q 043265 112 GRLQKIAEAREFIRNM 127 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m 127 (245)
.+.|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 8888888888887765
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.75 E-value=0.0017 Score=50.88 Aligned_cols=143 Identities=8% Similarity=-0.040 Sum_probs=105.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLD--SPDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACG 76 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~ 76 (245)
|..+-..|.+.|++++|++.|.+..+.+-.|+ ...|..+-..|...|.++.|....... . +.+...+..+-..|.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 45667789999999999999999988442222 345888888899999998887754332 2 235678999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHH-HHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCC
Q 043265 77 CFGAVDEGFQHFESVTRDYDINP-TLEHFLGIV-DLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPG 148 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li-~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~ 148 (245)
..|++++|.+.|++..+ ..| +...|..+- ..|.+ +++++|...|++.. ..|+ ...|..+-..+...|+
T Consensus 120 ~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 99999999999998855 345 455666666 55554 59999999998774 3444 5556666666666565
No 68
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00082 Score=53.19 Aligned_cols=146 Identities=8% Similarity=-0.066 Sum_probs=96.3
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh----hhhHHHHHHHHhcCCC-CcHhhHHHHHHH
Q 043265 4 SELKHLCR----EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMD----LKLLEAGKRFENDGVR-PNWSTFVGVITA 74 (245)
Q Consensus 4 ~ll~~~~~----~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~-p~~~t~~~ll~~ 74 (245)
.+-..|.+ .+++++|.+.|.+..+.+ +...+..+-..|.. .++++.+.+..+..+. -+...+..+-..
T Consensus 43 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 119 (273)
T 1ouv_A 43 NLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 34456667 888888888888887776 56677777777777 6666666554322211 156667777777
Q ss_pred hcc----cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhc----cCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-
Q 043265 75 CGC----FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGR----LQKIAEAREFIRNMQIDASSVVWETLEKYAQT- 145 (245)
Q Consensus 75 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~----~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~- 145 (245)
|.. .+++++|...|+...+ .+ +...+..+-..|.+ .++.++|...|++..-..+...+..+-..|..
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHG 195 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 777 7888888888887765 33 45566667777776 78888888888765312344555555566666
Q ss_pred ---CCCCccccccc
Q 043265 146 ---EPGLLLGEPSS 156 (245)
Q Consensus 146 ---~g~~~~~~~~~ 156 (245)
.++.+.|...+
T Consensus 196 ~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 196 EGATKNFKEALARY 209 (273)
T ss_dssp CSSCCCHHHHHHHH
T ss_pred CCCCccHHHHHHHH
Confidence 66766665544
No 69
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.71 E-value=0.00018 Score=58.92 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=69.1
Q ss_pred hhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCC-CcchHHHHHHHHHHhccCCHHHHHHH
Q 043265 45 MDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDI-NPTLEHFLGIVDLYGRLQKIAEAREF 123 (245)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~y~~~g~~~~a~~~ 123 (245)
...++...++++...+ +++..++..+-.++...|++++|++++.+... .+- .-+...+..++..|.+.|+.+.|.+.
T Consensus 81 ~~~~a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 81 LDTKNIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp HTTTCCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3455677777766555 56666667888889999999999999987633 121 12567788899999999999999999
Q ss_pred HHhcC-CCC-----cHHHHHHHHHH
Q 043265 124 IRNMQ-IDA-----SSVVWETLEKY 142 (245)
Q Consensus 124 ~~~m~-~~~-----~~~~~~~li~~ 142 (245)
+++|. ..| +..+..-|..+
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHH
Confidence 99886 456 24555555544
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.70 E-value=0.0003 Score=56.83 Aligned_cols=142 Identities=11% Similarity=0.005 Sum_probs=97.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhh-hhHHHHHHHHhcCCC--C------c-Hh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDL-KLLEAGKRFENDGVR--P------N-WS 66 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~-~~~~~~~~~~~~~~~--p------~-~~ 66 (245)
|+.+-..|.+.|++++|+..|++..+. |-.+ -..+|+.+-..|... |.++.|....+..+. | . ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 455667888999999999999987543 2111 135788888888885 888887665332211 1 1 35
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC-cch-----HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHH-----
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDIN-PTL-----EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSV----- 134 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~-----~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~----- 134 (245)
+++.+-..+.+.|++++|...|++..+. ... +.. ..|..+..+|...|+.++|...|++.. +.|+..
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 6888999999999999999999988662 222 221 156778889999999999999998874 445422
Q ss_pred -HHHHHHHHHH
Q 043265 135 -VWETLEKYAQ 144 (245)
Q Consensus 135 -~~~~li~~~~ 144 (245)
.+..++.++.
T Consensus 239 ~~l~~l~~~~~ 249 (292)
T 1qqe_A 239 NFLKSLIDAVN 249 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 2344555554
No 71
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.69 E-value=0.00041 Score=55.97 Aligned_cols=133 Identities=9% Similarity=-0.059 Sum_probs=98.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCC-Cc----HhhHHHHHHHhcccC
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR-PN----WSTFVGVITACGCFG 79 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-p~----~~t~~~ll~~~~~~g 79 (245)
....+...|++++|.++|..+...+ |+....-.+-..+.+.+.++++....+.... |+ ...+..+=.++.+.|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3467888999999999999987754 6544444444567788999999887654433 32 235667777899999
Q ss_pred cHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHH
Q 043265 80 AVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLE 140 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li 140 (245)
++++|++.|++... ....|. .......-.++.+.|+.++|..+|+++. ..|+...+.+|.
T Consensus 186 ~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 186 LFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp CHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 99999999998864 344354 3355677888999999999999999985 467755555553
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.65 E-value=0.00051 Score=60.73 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
.|++++|++.|++..+.. .-+...|..+-..|.+.|.+++|.+..+. ...| +...+..+-..|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777765432 12356666677777777777776655333 2233 3566667777777777777777777
Q ss_pred HHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhC---CCCccccccc
Q 043265 89 ESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTE---PGLLLGEPSS 156 (245)
Q Consensus 89 ~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~---g~~~~~~~~~ 156 (245)
++..+. .| +...|..+-.+|.+.|+.++|.+.|++.- ..| +...|..+...+... |+.+.|....
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 766542 23 34566677777777777777777776653 223 455566666666666 5555554444
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.63 E-value=0.0029 Score=43.12 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=64.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLY 111 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y 111 (245)
.+..+-..+...|.++.|....... .+.+...+..+...+...|++++|.+.++...+. .| +...+..+-.+|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHHH
Confidence 3444444444444444443332211 1224556666667777777788888877776542 23 356677777788
Q ss_pred hccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCC
Q 043265 112 GRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPG 148 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~ 148 (245)
.+.|++++|...|++.. ..| +...+..+-..+...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 88888888888887653 233 45556655566655544
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.61 E-value=0.00068 Score=65.53 Aligned_cols=135 Identities=14% Similarity=0.084 Sum_probs=97.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
|.-++.+|.+.|++++|.+.|...++.. +++...+.+..+|++.+.++..+.+.. .|+...|..+=..|-..|++
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHHHHHHHHHHHhcCCH
Confidence 3456778888888888988888776654 333334458888888888877766653 44666777788888889999
Q ss_pred HHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccc
Q 043265 82 DEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
++|..+|... ..|..+..+|.+.|++++|.+.+.+-. +..+|.-+-.+|...|+++.|..
T Consensus 1212 eeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1212 DAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999998753 378899999999999999999888765 45666655555555544444433
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.61 E-value=0.00044 Score=54.52 Aligned_cols=155 Identities=8% Similarity=-0.099 Sum_probs=104.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHhhhhhhHHHHHHHHhcCC--CC----cHhhHHHHHHHhcc-
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIF-LD-SPDIIELLNVCMDLKLLEAGKRFENDGV--RP----NWSTFVGVITACGC- 77 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p----~~~t~~~ll~~~~~- 77 (245)
..+.+.|++++|.+.|.++.+..-. |. ...+..+-.+|.+.|.++.|....+.-+ .| ....+..+-.++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 5677899999999999999876421 11 5677778888888898888866533321 22 24456666677777
Q ss_pred -------cCcHHHHHHHHHHhhhhcCCCcc-hHHH-----------------HHHHHHHhccCCHHHHHHHHHhcC-CCC
Q 043265 78 -------FGAVDEGFQHFESVTRDYDINPT-LEHF-----------------LGIVDLYGRLQKIAEAREFIRNMQ-IDA 131 (245)
Q Consensus 78 -------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~y~~~g~~~~a~~~~~~m~-~~~ 131 (245)
.|++++|...|++..+.. |+ .... -.+-..|.+.|++++|...|++.. ..|
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999987642 33 2233 455788999999999999998873 234
Q ss_pred c----HHHHHHHHHHHHhC----------CCCccccccc--cccccccc
Q 043265 132 S----SVVWETLEKYAQTE----------PGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 132 ~----~~~~~~li~~~~~~----------g~~~~~~~~~--~~~~~~~~ 164 (245)
+ ...+..+-.+|... |+.+.|...+ +++.+|+.
T Consensus 180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 3 23455555666554 4455555544 55544443
No 76
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.58 E-value=0.00076 Score=56.97 Aligned_cols=159 Identities=7% Similarity=0.032 Sum_probs=122.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhh-HHHHHHHHhcC--CCC-cHhhHHHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKL-LEAGKRFENDG--VRP-NWSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~ 77 (245)
|+.+-..+.+.|++++|++.|++....+- -+...|+.+-.++.+.|. ++.|....+.. ..| +...|..+-.++.+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44555678889999999999999987542 257888888888988886 88887764443 334 57889999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHh-CCCCcccc
Q 043265 78 FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQT-EPGLLLGE 153 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~-~g~~~~~~ 153 (245)
.|++++|...|+...+ +.| +...|..+-.+|.+.|++++|...|++.- ..| +...|+.+-.++.. .|..+.|.
T Consensus 179 ~g~~~eAl~~~~kal~---ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 179 LRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred ccCHHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 9999999999998865 345 56789999999999999999999998874 344 57788888888877 66656652
Q ss_pred -----ccc--cccccccc
Q 043265 154 -----PSS--SLRLSNKK 164 (245)
Q Consensus 154 -----~~~--~~~~~~~~ 164 (245)
..+ ++++.|+.
T Consensus 256 ~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 222 66665554
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.58 E-value=0.0023 Score=51.50 Aligned_cols=145 Identities=12% Similarity=-0.018 Sum_probs=109.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CCcHhhHHHHHH-HhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RPNWSTFVGVIT-ACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~~~t~~~ll~-~~~~~g~~~ 82 (245)
-..+.+.|++++|+..|++.....- -+...+..+-..+.+.|.+++|....+.-. .|+......... .+.+.+..+
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence 3567789999999999999887532 256788889999999999999988766543 455443322222 356677788
Q ss_pred HHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHhCCCCccccc
Q 043265 83 EGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS---SVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~---~~~~~~li~~~~~~g~~~~~~~ 154 (245)
+|...+++.... .| +...+..+-..|...|+.++|...|.+.- ..|+ ...+..+...+...|+.+.+..
T Consensus 203 ~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 203 PEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 888888877552 34 46778899999999999999999998874 3443 6778999999999888776543
No 78
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.58 E-value=0.0021 Score=43.53 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=61.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..+.+.|++++|.++|.++.+.. ..+..++..+...+.+.|.++.+....+.. .+.+..++..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3445566777788888888888776653 235667777777777777777765543322 233566777777778888
Q ss_pred CcHHHHHHHHHHhhh
Q 043265 79 GAVDEGFQHFESVTR 93 (245)
Q Consensus 79 g~~~~a~~~~~~m~~ 93 (245)
|++++|...|+++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888877654
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.51 E-value=0.0015 Score=48.22 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CCcHhhHHHHHHHh--cccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RPNWSTFVGVITAC--GCFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p~~~t~~~ll~~~--~~~g~ 80 (245)
+-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|.++.|....+..+ .|+...+ .+.... ...+.
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK-SLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH-HHHHHHHHHhhcc
Confidence 3456889999999999999976542 1256788888899999999999988766543 3433322 222111 12222
Q ss_pred HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHhCCCCcccccc
Q 043265 81 VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS---SVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~---~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
...|...++...+ ..| +...+..+-.+|.+.|+.++|...|++.- ..|+ ...|..+...+...|+.+.+...
T Consensus 90 ~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 90 ESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp SCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 3346777777654 345 46788899999999999999999998763 4554 55788888999998988876543
No 80
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.51 E-value=0.0018 Score=51.98 Aligned_cols=151 Identities=8% Similarity=-0.050 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-H----HHHHHHHHHhhhhhhHHHHHHHHhcC-------CCCc--HhhHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD-S----PDIIELLNVCMDLKLLEAGKRFENDG-------VRPN--WSTFV 69 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~~~~~~~~~-------~~p~--~~t~~ 69 (245)
..+..+...|++++|.+.+.+..+..-..+ . ..+..+...+...|.++.|....... ..+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 456778899999999999998776533211 1 12233334455556777776542221 1122 45889
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhh---hcCCCc--chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-------HHHH
Q 043265 70 GVITACGCFGAVDEGFQHFESVTR---DYDINP--TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-------SVVW 136 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-------~~~~ 136 (245)
.+-..|...|++++|...|++..+ ..+-.+ ...+|..+-.+|.+.|++++|...|++.- +.++ ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999999998762 222222 22588899999999999999999997652 1111 4567
Q ss_pred HHHHHHHHhCCCCccc-cc
Q 043265 137 ETLEKYAQTEPGLLLG-EP 154 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~-~~ 154 (245)
..+-..|...|+.+.| ..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHH
Confidence 7777888888988887 44
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.40 E-value=0.0026 Score=53.03 Aligned_cols=155 Identities=10% Similarity=-0.042 Sum_probs=110.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--------CCCCcHhhH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--------GVRPNWSTF 68 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--------~~~p~~~t~ 68 (245)
++.+=..|...|++++|.+.|.+..+. |-.+ ...++..+-..|...|.++.|.+.... +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 345567788999999999999987642 2211 134677777788888888887664222 333447788
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcC---CCcchHHHHHHHHHHhccCC---HHHHHHHHHhcCCCCcHH-HHHHHHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYD---INPTLEHFLGIVDLYGRLQK---IAEAREFIRNMQIDASSV-VWETLEK 141 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~y~~~g~---~~~a~~~~~~m~~~~~~~-~~~~li~ 141 (245)
..+-..|.+.|+.++|...+++..+-.. -......+..+-..|...|+ +++|...+++....|+.. .+..+-.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8899999999999999999998765221 12224457778888888898 899999999876444443 4444558
Q ss_pred HHHhCCCCccccccc
Q 043265 142 YAQTEPGLLLGEPSS 156 (245)
Q Consensus 142 ~~~~~g~~~~~~~~~ 156 (245)
.|...|+.+.|...+
T Consensus 345 ~y~~~g~~~~A~~~~ 359 (378)
T 3q15_A 345 VFESSCHFEQAAAFY 359 (378)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 888889888876544
No 82
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.38 E-value=0.00017 Score=57.97 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=109.3
Q ss_pred hhHHHHHHHHcCC--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHH
Q 043265 2 LNSELKHLCRERE--------------------VKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 2 ~n~ll~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
++.+-..|...|+ +++|.+.|.+.... +-.| ...++..+-..|...|.++.+.+.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445566777788 89999998886432 2112 234677777788888888887665
Q ss_pred HhcCC--------CC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-chHHHHHHHHHHhccCCHHHHHHH
Q 043265 57 ENDGV--------RP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDY---DINP-TLEHFLGIVDLYGRLQKIAEAREF 123 (245)
Q Consensus 57 ~~~~~--------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~y~~~g~~~~a~~~ 123 (245)
.+..+ .+ ...++..+...+...|++++|...+++..... +-.+ ...++..+-..|.+.|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33211 11 23478888999999999999999998775421 1111 156788899999999999999999
Q ss_pred HHhcC-C---CCc----HHHHHHHHHHHHhCCCCccccccc--ccccc
Q 043265 124 IRNMQ-I---DAS----SVVWETLEKYAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 124 ~~~m~-~---~~~----~~~~~~li~~~~~~g~~~~~~~~~--~~~~~ 161 (245)
+++.. . .++ ..+|..+-..+...|+.+.|.... ++++.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 87653 1 111 346667778888899988877665 44443
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.38 E-value=0.00085 Score=56.01 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=114.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--------CC-CCcHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--------GV-RPNWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--------~~-~p~~~t 67 (245)
++.+=..|...|++++|++.|.+..+. +-.+ ...++..+-..|...|.++.|.+..+. +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 344557788999999999999987643 2111 124677788888888888887664222 33 334677
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCcchHHHHHHHHHHhccCC---HHHHHHHHHhcCCCCcH-HHHHHHH
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRD---YDINPTLEHFLGIVDLYGRLQK---IAEAREFIRNMQIDASS-VVWETLE 140 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~y~~~g~---~~~a~~~~~~m~~~~~~-~~~~~li 140 (245)
+..+-..|.+.|++++|.+.+++..+- .+-......+..+-..|.+.|+ +++|..++++....|+. ..+..+-
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 346 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 899999999999999999999876541 1111123346778899999999 89999999998744544 3455555
Q ss_pred HHHHhCCCCccccccc--ccccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
..|...|+.+.|...+ ++++...
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999887666 5544433
No 84
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.37 E-value=0.00027 Score=59.27 Aligned_cols=154 Identities=12% Similarity=-0.009 Sum_probs=89.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhh-----------------HHHHHHHHhc-
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKL-----------------LEAGKRFEND- 59 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~-----------------~~~~~~~~~~- 59 (245)
+.+-..|...|++++|.+.|.+.... +-.| ...++..+-..|...|. ++.+.+....
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 34555667777777777777775432 1111 23456666666666677 6666543221
Q ss_pred -------CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 60 -------GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT----LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 60 -------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+-.| ...++..+-..|...|++++|.+.+++..+-..-.++ ...+..+..+|...|++++|...|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1112 2346667777777778888777777766431100011 225667777777788887777777654
Q ss_pred C-CCC-------cHHHHHHHHHHHHhCCCCccccccc
Q 043265 128 Q-IDA-------SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 128 ~-~~~-------~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
. ..+ ...+|..+-..+...|+.+.|....
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 111 1345566667777777777665544
No 85
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.37 E-value=0.0049 Score=42.27 Aligned_cols=110 Identities=7% Similarity=0.074 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIV 108 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 108 (245)
+...|..+-..+.+.|.++.|...... ...| +...+..+-..+...|++++|.+.++...+. .| +...+..+-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHH
Confidence 345555666666666666666554332 1223 4666777777788888888888888777552 23 456777788
Q ss_pred HHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHh
Q 043265 109 DLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQT 145 (245)
Q Consensus 109 ~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~ 145 (245)
.+|.+.|++++|...|++.. ..|+ ...|..+-..+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 88888888888888887653 2333 3444444444443
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.34 E-value=0.0012 Score=47.74 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQH 87 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 87 (245)
.|++++|++.|...... .|+ ...+-.+-..|.+.|.++.|.+..+. .+.| +...|..+-.+|.+.|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34556666655554332 121 22333444555555666655554332 2233 355556666666666666666666
Q ss_pred HHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHH
Q 043265 88 FESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEARE 122 (245)
Q Consensus 88 ~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~ 122 (245)
|+...+ +.|+ ...|..+-.+|.+.|+.++|.+
T Consensus 88 ~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 88 YRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 665543 2332 4455556666666666555443
No 87
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.33 E-value=0.0044 Score=41.01 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=26.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc---chHHHHHHHHHHhcc-CCHHHHHHHHHhc
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINP---TLEHFLGIVDLYGRL-QKIAEAREFIRNM 127 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~y~~~-g~~~~a~~~~~~m 127 (245)
+..+-..+...|++++|.+.|++..+. .| +...+..+..+|.+. |+.++|.+.|+..
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333444444445555555555444331 12 234444455555555 5555555555443
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.32 E-value=0.00044 Score=55.53 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=90.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHhhhhhh--------------------HHHHHHHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGI-FLD----SPDIIELLNVCMDLKL--------------------LEAGKRFE 57 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~~~~~~ 57 (245)
..+-..|...|++++|.+.|.+..+..- .++ ..++..+-..|...|. ++.+.+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 3455667777888888887777543211 112 2356666666766677 66665432
Q ss_pred hc--------CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-chHHHHHHHHHHhccCCHHHHHHHH
Q 043265 58 ND--------GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDY---DINP-TLEHFLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 58 ~~--------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~y~~~g~~~~a~~~~ 124 (245)
.. +-.| ...++..+-..+...|++++|.+.+++..+-. +..+ ...++..+...|.+.|+.++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1112 23466777777777888888888777664311 1111 1236677777788888888887777
Q ss_pred HhcC-C---CCc----HHHHHHHHHHHHhCCCCccccccc
Q 043265 125 RNMQ-I---DAS----SVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 125 ~~m~-~---~~~----~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
++.. . .++ ..++..+-..+...|+.+.|....
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6542 1 111 345555556777777776655443
No 89
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.31 E-value=0.00069 Score=56.26 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHhhhhhh--------------------HHHHHHHH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGI-FLD----SPDIIELLNVCMDLKL--------------------LEAGKRFE 57 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~~~~~~ 57 (245)
..+-..|...|++++|.+.|.+..+..- .++ ..++..+-..|...|. ++.+....
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 4455677788888888888887654211 012 3467777777777787 77765542
Q ss_pred hc--------CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----hHHHHHHHHHHhccCCHHHHHHHH
Q 043265 58 ND--------GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT----LEHFLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 58 ~~--------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~y~~~g~~~~a~~~~ 124 (245)
.. +-.| ...++..+-..|...|++++|.+.+++..+-..-.++ ..+|..+-..|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 21 2122 2456778888888889999998888876542111112 336778888888999999988888
Q ss_pred HhcC-C---CCc----HHHHHHHHHHHHhCCCCccccccc--ccccc
Q 043265 125 RNMQ-I---DAS----SVVWETLEKYAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 125 ~~m~-~---~~~----~~~~~~li~~~~~~g~~~~~~~~~--~~~~~ 161 (245)
++.. . .++ ..+|..+-..+...|+.+.|.... ++++.
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 7652 1 111 456667778888888888877665 44443
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.31 E-value=0.0017 Score=59.38 Aligned_cols=121 Identities=8% Similarity=0.119 Sum_probs=100.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~ 77 (245)
|+.+=..|.+.|++++|++.|++..+.+ | +...|..+-.+|.+.|.+++|.+..+. .+.| +...|+.+-.+|..
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556678899999999999999988753 4 478899999999999999998776444 2345 47889999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 78 FGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|.+.|++.
T Consensus 124 ~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 124 SGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp TTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 9999999999998865 4564 678899999999999999998887654
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.30 E-value=0.00039 Score=56.57 Aligned_cols=160 Identities=8% Similarity=-0.009 Sum_probs=107.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHH-------H-hcCCCC-cHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRF-------E-NDGVRP-NWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~-------~-~~~~~p-~~~t 67 (245)
|+-....|...|++++|.+.|.+..+. |-.+ -..+|+.+-..|.+.|.++.|... . ..|-.+ -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566788889999999999987543 2111 135777888888877766665443 2 122211 2467
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-C---CCc----HHH
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDY---DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I---DAS----SVV 135 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~---~~~----~~~ 135 (245)
++.+-..|.. |++++|.+.|++...-. +-.+ ...++..+-..|.+.|++++|...|++.- + .++ ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 8888888988 99999999998765411 1111 14678889999999999999999998663 1 111 225
Q ss_pred HHHHHHHHHhCCCCccccccc--ccccccc
Q 043265 136 WETLEKYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 136 ~~~li~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
|..+...+...|+.+.|...+ ++ +.|.
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 555666677778988887766 55 5554
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.28 E-value=0.0077 Score=41.25 Aligned_cols=110 Identities=5% Similarity=-0.055 Sum_probs=83.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~ 78 (245)
|..+-..+.+.|++++|.+.|++..+.. ..+...|..+-..|...|.++.+.+..+.. . +.+...+..+-.++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 4556678889999999999999987753 236788888889999999888887654332 2 33578888999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccC
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g 115 (245)
|++++|.+.|++..+. .| +...+..+-.+|.+.|
T Consensus 98 ~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 98 KDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhc
Confidence 9999999999988652 33 3455666666666544
No 93
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.28 E-value=0.002 Score=44.07 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=28.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAG 53 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 53 (245)
|..+-..+.+.|++++|...|.+..... ..+...+..+-..|...|.++.+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 57 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKC 57 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHH
Confidence 3445566677777777777777776543 12334444444444444444443
No 94
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.27 E-value=0.00028 Score=59.19 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=111.7
Q ss_pred hhHHHHHHHHcCC-----------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 043265 2 LNSELKHLCRERE-----------------VKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRFEND 59 (245)
Q Consensus 2 ~n~ll~~~~~~g~-----------------~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~ 59 (245)
|+.+-..|...|+ +++|.+.|.+..+. +-.| ...++..+-..|...|.++.|.+....
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3455567778888 99999998886432 2212 234677777888888888887665333
Q ss_pred CCC-----Cc----HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcC---CC-cchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 60 GVR-----PN----WSTFVGVITACGCFGAVDEGFQHFESVTRDYD---IN-PTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 60 ~~~-----p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~-p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
.+. ++ ..++..+-..|...|++++|.+.|++...... -. ....++..+-.+|.+.|++++|...|++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 211 11 23788899999999999999999987754211 10 1256788899999999999999999986
Q ss_pred cC-CC---Cc----HHHHHHHHHHHHhCCCCccccccc--cccccc
Q 043265 127 MQ-ID---AS----SVVWETLEKYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 127 m~-~~---~~----~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
.. .. ++ ..+|..+-..|...|+.+.|...+ ++++.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 63 11 11 346667778888999988877665 554443
No 95
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.27 E-value=0.0036 Score=60.68 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=108.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
|..+...|++.|++++|.+.+.+. -+..+|.-+-.+|...|.+..|..... ++..+...+..++..|.+.|.+
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl-~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL-HIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH-hhhcCHHHHHHHHHHHHHcCCH
Confidence 677888888889999998888876 245889888889988888888887654 3666777888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhc--cCCHHHHHHHHH-hcCCCC------cHHHHHHHHHHHHhCCCCcc
Q 043265 82 DEGFQHFESVTRDYDINP-TLEHFLGIVDLYGR--LQKIAEAREFIR-NMQIDA------SSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~--~g~~~~a~~~~~-~m~~~~------~~~~~~~li~~~~~~g~~~~ 151 (245)
++|..+++.-. +..| ....|+-|-.+|++ -+++.++.++|. ++.++| +...|.-++-.|...|+++.
T Consensus 1297 eEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A 1297 EELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred HHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999996543 3443 34456556666665 456667777775 444333 56889999999999999988
Q ss_pred cc
Q 043265 152 GE 153 (245)
Q Consensus 152 ~~ 153 (245)
|.
T Consensus 1374 A~ 1375 (1630)
T 1xi4_A 1374 AI 1375 (1630)
T ss_pred HH
Confidence 75
No 96
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.27 E-value=0.0024 Score=49.01 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHhhhhhhHHHHHHHHh----cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHH
Q 043265 32 LDSPDIIELLNVCMDLKLLEAGKRFEN----DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLG 106 (245)
Q Consensus 32 p~~~t~~~ll~~~~~~~~~~~~~~~~~----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 106 (245)
.|+..|...-..+.+.|.++.|..... ..-+++...+..+-.++.+.|++++|.+.|+...+ ..| +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 356777777778888888888766533 23236778888899999999999999999998865 345 4577889
Q ss_pred HHHHHhccCCHHHHHHHHHhcC-CCCc-H-------HHHHHHHHHHHhCCCCccccccc--ccccccc
Q 043265 107 IVDLYGRLQKIAEAREFIRNMQ-IDAS-S-------VVWETLEKYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 107 li~~y~~~g~~~~a~~~~~~m~-~~~~-~-------~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
+-.+|.+.|+.++|...|++.- ..|+ . ..|..+=..+...|+.+.|...+ ++++.|+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998774 3444 3 34555557777888888887776 6665544
No 97
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.25 E-value=0.00095 Score=47.45 Aligned_cols=126 Identities=10% Similarity=-0.031 Sum_probs=80.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHhhhhhhHHHHHHHHhc--------CCCC-cHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIF-LD----SPDIIELLNVCMDLKLLEAGKRFEND--------GVRP-NWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~~~~~~~~--------~~~p-~~~t 67 (245)
++.+-..|...|++++|.+.|.+..+..-. ++ ..++..+-..|...|.++.+....+. +-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 445566788899999999999887643211 12 13566666667777777766554222 1111 1456
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRD---YDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+..+-..+...|++++|.+.+++...- .+-.+ ....+..+-..|...|+.++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 677777778888888888888766431 11111 2345677778888888888888877653
No 98
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.22 E-value=0.00046 Score=51.72 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=95.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHh--------cCCCC-cHhhHHHHHHHhcccC
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEN--------DGVRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~--------~~~~p-~~~t~~~ll~~~~~~g 79 (245)
....|++++|.++++.+.. ........+..+-..|...|.++.+..... .+..| ...++..+-..+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467899999995555433 222346677888888888888887765422 22323 3567788888899999
Q ss_pred cHHHHHHHHHHhhhh---cCCCc--chHHHHHHHHHHhccCCHHHHHHHHHhcC----C--CCc--HHHHHHHHHHHHhC
Q 043265 80 AVDEGFQHFESVTRD---YDINP--TLEHFLGIVDLYGRLQKIAEAREFIRNMQ----I--DAS--SVVWETLEKYAQTE 146 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~---~~~~p--~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~--~~~--~~~~~~li~~~~~~ 146 (245)
++++|.+.+++...- .+-.| ....+..+-..|...|++++|...+++.. . .+. ..++..+-..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999876542 22122 24557788889999999999998886542 1 121 23345566778888
Q ss_pred CCCccccccc
Q 043265 147 PGLLLGEPSS 156 (245)
Q Consensus 147 g~~~~~~~~~ 156 (245)
|+.+.|....
T Consensus 161 g~~~~A~~~~ 170 (203)
T 3gw4_A 161 KNLLEAQQHW 170 (203)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8888776554
No 99
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.22 E-value=0.00033 Score=58.25 Aligned_cols=161 Identities=11% Similarity=0.023 Sum_probs=110.9
Q ss_pred hhHHHHHHHHcCC--------------------HHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHhhhhhhHHHHHHH
Q 043265 2 LNSELKHLCRERE--------------------VKAALEVMDKLKNI----GIFLD-SPDIIELLNVCMDLKLLEAGKRF 56 (245)
Q Consensus 2 ~n~ll~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~~~~~ 56 (245)
++.+-..|...|+ +++|.+.|.+.... +-.|. ..++..+-..|...|.++.|.+.
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3445566777888 99999998876432 22222 34677777888888888887665
Q ss_pred HhcCC--------CC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCc-chHHHHHHHHHHhccCCHHHHHHH
Q 043265 57 ENDGV--------RP-NWSTFVGVITACGCFGAVDEGFQHFESVTRD---YDINP-TLEHFLGIVDLYGRLQKIAEAREF 123 (245)
Q Consensus 57 ~~~~~--------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~y~~~g~~~~a~~~ 123 (245)
....+ .+ ...++..+-..|...|++++|...+++...- .+-.+ ...++..+-..|.+.|++++|...
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 32211 11 2347888999999999999999999877541 11111 156788899999999999999999
Q ss_pred HHhcC-C---CCc----HHHHHHHHHHHHhCCCCccccccc--cccccc
Q 043265 124 IRNMQ-I---DAS----SVVWETLEKYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 124 ~~~m~-~---~~~----~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
|++.. . .++ ..+|..+-..+...|+.+.|...+ ++++.+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 87653 1 112 456677778888889988887766 554443
No 100
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.22 E-value=0.006 Score=50.31 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=78.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLD--------------SPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NW 65 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~ 65 (245)
+.+=..|.+.|++++|.+.|.+..+..-... ...|..+-.+|.+.|.++.|....... +.| +.
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3445678889999999999999877543221 366667777777777666665542221 122 46
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHH-HHHHhc
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAR-EFIRNM 127 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~-~~~~~m 127 (245)
..|..+-.+|...|++++|...|+...+ +.| +...+..+-.+|.+.|+.++|. .+|.+|
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777776654 233 3455666777777777776663 344433
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.21 E-value=0.009 Score=52.67 Aligned_cols=122 Identities=8% Similarity=-0.049 Sum_probs=99.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~ 78 (245)
|..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|.+.|.+++|.+..+.. ..| +...+..+-.+|.+.
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999988754 235788888999999999999887764432 234 577899999999999
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhcc---CCHHHHHHHHHhc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRL---QKIAEAREFIRNM 127 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~---g~~~~a~~~~~~m 127 (245)
|++++|.+.|++..+. .| +...+..+..+|.+. |+.++|...+++.
T Consensus 105 g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999988652 34 467788999999999 9999999999866
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.19 E-value=0.002 Score=42.78 Aligned_cols=97 Identities=12% Similarity=-0.024 Sum_probs=76.3
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC---cHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA---SSVVWETL 139 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~---~~~~~~~l 139 (245)
+...+..+-..+.+.|++++|...|+...+. ...+...|..+-.+|.+.|++++|...|++.. ..| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4566777888899999999999999988663 12256778889999999999999999998764 344 47788888
Q ss_pred HHHHHhC-CCCccccccc--cccccc
Q 043265 140 EKYAQTE-PGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 140 i~~~~~~-g~~~~~~~~~--~~~~~~ 162 (245)
-..+... |+.+.|.... ++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 8999999 9999887766 544444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.18 E-value=0.0062 Score=46.82 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=100.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCcHh----hHHHHHHHhc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIF-LD-SPDIIELLNVCMDLKLLEAGKRFEND--GVRPNWS----TFVGVITACG 76 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~~~----t~~~ll~~~~ 76 (245)
+-..+.+.|++++|++.|+++.+..-. |. ...+..+-.+|.+.|.++.|....+. ...|+.. .+-.+-.++.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 345688899999999999999875322 22 35677778888888888887664332 1223321 2222222222
Q ss_pred ------------------ccCcHHHHHHHHHHhhhhcCCCcch-HHH-----------------HHHHHHHhccCCHHHH
Q 043265 77 ------------------CFGAVDEGFQHFESVTRDYDINPTL-EHF-----------------LGIVDLYGRLQKIAEA 120 (245)
Q Consensus 77 ------------------~~g~~~~a~~~~~~m~~~~~~~p~~-~~~-----------------~~li~~y~~~g~~~~a 120 (245)
..|+.++|...|+...+. .|+. ..+ -.+-..|.+.|++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 367999999999988763 3432 222 2345678899999999
Q ss_pred HHHHHhcC-CCCcH----HHHHHHHHHHHhCCCCccccccc
Q 043265 121 REFIRNMQ-IDASS----VVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 121 ~~~~~~m~-~~~~~----~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
...|+++- ..|+. ..+..+-.++...|+.+.|....
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99998874 23442 45667778999999998887665
No 104
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.17 E-value=0.002 Score=47.33 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=86.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CC-cHhhHHHHHHH-hcccCcH--HH
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RP-NWSTFVGVITA-CGCFGAV--DE 83 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p-~~~t~~~ll~~-~~~~g~~--~~ 83 (245)
...|++++|.+.|.+..... ..+...|..+-..|...|.++.|.......+ .| +...+..+-.+ +...|+. ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678889999999887654 2367888888888989998888877544322 23 56677777777 7788998 99
Q ss_pred HHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH
Q 043265 84 GFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS 133 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~ 133 (245)
|...|+...+. .| +...+..+-.+|.+.|++++|...|++.- ..|+.
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999988653 34 45677888899999999999999998763 44443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.17 E-value=0.0056 Score=45.09 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=82.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hhhh----hhHHHHHHHHhcCCCC-cHhhHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNV-CMDL----KLLEAGKRFENDGVRP-NWSTFVGVITAC 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~-~~~~----~~~~~~~~~~~~~~~p-~~~t~~~ll~~~ 75 (245)
|..+-..|.+.|++++|++.|++..... |+...+..+... +... ++.+.+++..+ ..| +...+..+-..+
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3445677889999999999999986543 344333222111 1111 12333333332 345 578888999999
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
...|++++|...|++..+ ..|+ ...+..+..+|...|+.++|...|.+
T Consensus 119 ~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 999999999999998865 3443 56788999999999999999988864
No 106
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.12 E-value=0.003 Score=47.09 Aligned_cols=126 Identities=16% Similarity=0.014 Sum_probs=89.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHhhhhhhHHHHHHHHh--------cCCCC--cHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKN----IGIFL-DSPDIIELLNVCMDLKLLEAGKRFEN--------DGVRP--NWS 66 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~--------~~~~p--~~~ 66 (245)
++.+-..|...|++++|.+.|.+... .|..| ...++..+-..|...|.++.+..... .+-.| ...
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 45566778899999999999999765 22222 24567777777888888887765422 22122 245
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRD---YDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+..+-..+...|++++|.+.+++...- .+-.+ -..++..+-.+|.+.|++++|...|++.
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 6788888999999999999999877531 11111 1344678889999999999999888655
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.11 E-value=0.003 Score=48.09 Aligned_cols=151 Identities=8% Similarity=0.031 Sum_probs=95.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHH----------------HHHHhhhhhhHHHHHHHHhcC--CCC-cHh
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLD-SPDIIE----------------LLNVCMDLKLLEAGKRFENDG--VRP-NWS 66 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~-~~t~~~----------------ll~~~~~~~~~~~~~~~~~~~--~~p-~~~ 66 (245)
..+.+.|++++|+..|.+..+.. |+ ...|.. +-.+|.+.|.++.|....+.. ..| +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 35678899999999999987753 33 344555 666777778888877654432 234 567
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCC--HHHHHHHHHhcCCCCcHHHHHH--HHH
Q 043265 67 TFVGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQK--IAEAREFIRNMQIDASSVVWET--LEK 141 (245)
Q Consensus 67 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~--~~~a~~~~~~m~~~~~~~~~~~--li~ 141 (245)
.+..+-..+...|++++|...|++..+ +.|+ ...|..+-.+|...|. .+.+...|.... .|+...|.. +=.
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 788888888899999999999988765 3453 5667777777765543 344555666554 444432211 112
Q ss_pred HHHhCCCCccccccc--ccccccc
Q 043265 142 YAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 142 ~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
++...|+.+.|...+ ++++.|+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 233345666665555 6665554
No 108
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.0028 Score=42.41 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHH
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVD 109 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 109 (245)
...+..+...+...|.++.+.+..+.. ..| +...+..+-..+...|++++|...++...+. .| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456666777777778887776654332 223 5677777888888888888888888877652 23 4567778888
Q ss_pred HHhccCCHHHHHHHHHhcC-CCCc
Q 043265 110 LYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 110 ~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
+|.+.|+.++|...|+... ..|+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 8888888888888887653 3443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.08 E-value=0.0013 Score=47.45 Aligned_cols=118 Identities=7% Similarity=-0.165 Sum_probs=89.1
Q ss_pred hhhhhhHHHHHHHHhcCCC--C-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHH
Q 043265 44 CMDLKLLEAGKRFENDGVR--P-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAE 119 (245)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~ 119 (245)
+...|.++.+.......++ | +...+-.+-..|.+.|++++|.+.|++..+ +.| +...|..+-.+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 4556788887665444333 3 345566788889999999999999998865 345 56789999999999999999
Q ss_pred HHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccccc--c-cccccccc
Q 043265 120 AREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPS--S-SLRLSNKK 164 (245)
Q Consensus 120 a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~--~-~~~~~~~~ 164 (245)
|...|++.- +.| +...|..+-..+...|+.+.+... . ++++.|+.
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999998764 455 467788888888888888764433 2 77887766
No 110
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.003 Score=44.35 Aligned_cols=103 Identities=7% Similarity=-0.015 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc----HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFEND--GVRPN----WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFL 105 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 105 (245)
+...+..+-..+...|.++.+.+..+. ...|+ ...|..+-.+|...|++++|.+.++...+. .| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHH
Confidence 456777777777777888777765443 34565 567777777888888888888888877552 33 456677
Q ss_pred HHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHH
Q 043265 106 GIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWET 138 (245)
Q Consensus 106 ~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~ 138 (245)
.+-.+|.+.|+.++|...|++.. ..|+ ...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 77888888888888888887663 3343 344433
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.05 E-value=0.0022 Score=58.22 Aligned_cols=150 Identities=13% Similarity=0.015 Sum_probs=102.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC--CC-cHhhHHHHHHHhccc
Q 043265 10 CREREVKAALEVMDKLK--------NIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV--RP-NWSTFVGVITACGCF 78 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~--~p-~~~t~~~ll~~~~~~ 78 (245)
...|++++|++.|++.. +. -..+...|..+-.+|.+.|.++.|....+..+ .| +...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56788888888888876 22 12345667777777888888877766543322 23 466777777788888
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
|++++|.+.|++..+ ..| +...|..+-.+|.+.|++++ ...|++.- ..| +...|..+-.++...|+.+.|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888887754 234 35667777788888888888 77776653 333 456676666778888888777666
Q ss_pred c--cccccccc
Q 043265 156 S--SLRLSNKK 164 (245)
Q Consensus 156 ~--~~~~~~~~ 164 (245)
+ ++++.|+.
T Consensus 557 ~~~al~l~P~~ 567 (681)
T 2pzi_A 557 LDEVPPTSRHF 567 (681)
T ss_dssp HHTSCTTSTTH
T ss_pred HHhhcccCccc
Confidence 5 66555543
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.04 E-value=0.0021 Score=43.85 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=77.3
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-C-CCcHHHHHHHH
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-I-DASSVVWETLE 140 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~-~~~~~~~~~li 140 (245)
.+...+..+...+...|++++|...|+..... ...+...+..+...|...|++++|...+++.. . +.+...|..+-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 35677888889999999999999999988653 12256788899999999999999999998764 2 33567777777
Q ss_pred HHHHhCCCCccccccc--cccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
..+...|+.+.|...+ ++++.|
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCc
Confidence 8899999988877666 555444
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.04 E-value=0.0077 Score=54.68 Aligned_cols=157 Identities=6% Similarity=-0.088 Sum_probs=114.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHhhhhhhHHHHHHHHhcCC--
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGI---------FLD------------SPDIIELLNVCMDLKLLEAGKRFENDGV-- 61 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~---------~p~------------~~t~~~ll~~~~~~~~~~~~~~~~~~~~-- 61 (245)
.+...-+.|++++|.++|+++..... .|+ ...|...++..-+.|.++.|+.+.....
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556778999999999999876420 142 3468888888888888888888754432
Q ss_pred ----CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC----c
Q 043265 62 ----RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA----S 132 (245)
Q Consensus 62 ----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~----~ 132 (245)
.+......+.|.-.+ .++.+.|..+|+...+. +.-+...|...++.....|+.+.|+.+|++.- ..| .
T Consensus 464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 223333444444332 35699999999988774 33345567788888889999999999999864 223 3
Q ss_pred HHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 133 SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
...|...+..-..+|+.+.+..+. +.+.+|+.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999988887 77777765
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.04 E-value=0.0072 Score=48.45 Aligned_cols=122 Identities=7% Similarity=-0.044 Sum_probs=88.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHhhhhhhHHHHHHHHhcCC-----CCc-----HhhHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGI---FLD--SPDIIELLNVCMDLKLLEAGKRFENDGV-----RPN-----WSTFV 69 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~~~~~~~~~~-----~p~-----~~t~~ 69 (245)
+-..+...|++++|++.|.+..+... .+. ..+|+.+-..|...|.++.|.......+ .|+ ..+|.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33456778899999999999865322 222 4588888889999998888766532211 122 26889
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhh---cCCCc-chHHHHHHHHHHhccCCHHHH-HHHHHh
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRD---YDINP-TLEHFLGIVDLYGRLQKIAEA-REFIRN 126 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~y~~~g~~~~a-~~~~~~ 126 (245)
.+-..|.+.|++++|...+++...- .+..+ -..+|..+-.+|.+.|+.++| ...|++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999999999999876541 11111 156788899999999999999 665554
No 115
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.95 E-value=0.0043 Score=42.35 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcC---CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCC-Ccc----hHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDG---VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDI-NPT----LEHFLG 106 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~~~~~ 106 (245)
..|..+-..+...|.++.|....... .+.+...+..+-..+...|++++|...++.......- .++ ...|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45667777788888888877654332 2346778888889999999999999999887552111 112 667888
Q ss_pred HHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Q 043265 107 IVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYA 143 (245)
Q Consensus 107 li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~ 143 (245)
+-.+|.+.|++++|...|+... ..|+...+..+-...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999999999998764 456665555554443
No 116
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.93 E-value=0.0058 Score=52.04 Aligned_cols=92 Identities=12% Similarity=-0.095 Sum_probs=59.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHhhhhhhHHHHHHHHh-------c---CCCC
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI-----G--IFL-DSPDIIELLNVCMDLKLLEAGKRFEN-------D---GVRP 63 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~-------~---~~~p 63 (245)
||.|=..|...|++++|++.|++..+- + ..| ...+|+.+-.+|...|.++.|..... . ...+
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 566667788899999999999886431 1 123 46789999999999988888755411 1 1112
Q ss_pred -cHhhHHHHHHHhcc--cCcHHHHHHHHHHhhh
Q 043265 64 -NWSTFVGVITACGC--FGAVDEGFQHFESVTR 93 (245)
Q Consensus 64 -~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~ 93 (245)
...+++.+-.++.+ .++.++|.+.|++..+
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 23445444334433 3468888888887654
No 117
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.92 E-value=0.017 Score=47.56 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CC-HHHHHHHHHHhhhhhhHHHHHHHHhcC--------CCCcHhhH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNI----GIF--LD-SPDIIELLNVCMDLKLLEAGKRFENDG--------VRPNWSTF 68 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~--------~~p~~~t~ 68 (245)
.+-..+...|++++|.+.|.+.... +-. |. ...+..+-..+...|.++.+....... ......+|
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3456678889999999999987542 222 32 345566777788889888887653322 11124567
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHH-----HHHHHHhccCCHHHHHHHHHhcC-CCCc-----HHHHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFL-----GIVDLYGRLQKIAEAREFIRNMQ-IDAS-----SVVWE 137 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~y~~~g~~~~a~~~~~~m~-~~~~-----~~~~~ 137 (245)
..+-..+...|++++|...+++...-..-......+. .....+...|+.++|...+.... ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999988754211111111111 33455889999999999998875 1221 23455
Q ss_pred HHHHHHHhCCCCccccccc
Q 043265 138 TLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 138 ~li~~~~~~g~~~~~~~~~ 156 (245)
.+-..+...|+.+.|....
T Consensus 258 ~la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 6667888888888766554
No 118
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.033 Score=38.76 Aligned_cols=84 Identities=8% Similarity=0.030 Sum_probs=39.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccC
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLD----SPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g 79 (245)
..+.+.|++++|.+.|.+..+. .|+ ...|..+-..|...|.++.+...... ...| +...+..+-.++...|
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 113 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLG 113 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcC
Confidence 3444555555555555555443 233 34444444445455555544433221 1122 3444445555555555
Q ss_pred cHHHHHHHHHHhh
Q 043265 80 AVDEGFQHFESVT 92 (245)
Q Consensus 80 ~~~~a~~~~~~m~ 92 (245)
++++|...|++..
T Consensus 114 ~~~~A~~~~~~al 126 (148)
T 2dba_A 114 RLDQAVLDLQRCV 126 (148)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 119
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.92 E-value=0.0082 Score=49.93 Aligned_cols=122 Identities=10% Similarity=0.083 Sum_probs=90.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--------CCCcHhhH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GI-FLDSPDIIELLNVCMDLKLLEAGKRFENDG--------VRPNWSTF 68 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--------~~p~~~t~ 68 (245)
|+.+=..|...|++++|.+.|.+..+. +- .....++..+-..|.+.|.++.|....+.. -+.....+
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445567788999999999999998762 33 334677888888899999888887653332 22233446
Q ss_pred HHHHHHhcccCc---HHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 69 VGVITACGCFGA---VDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 69 ~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+-..+...|+ +++|..+++.. +..|+ ...+..+-..|.+.|+.++|...|++.
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888888998 78888888755 22333 456778999999999999999998754
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.91 E-value=0.0036 Score=43.57 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHH
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVD 109 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 109 (245)
...|..+-..+...|.++.|....... ..| +...|..+-.++...|++++|...++..... .| +...|..+-.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHHHHH
Confidence 444555555555555555544432221 112 3444555555555555555555555544331 12 2344455555
Q ss_pred HHhccCCHHHHHHHHHhc
Q 043265 110 LYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 110 ~y~~~g~~~~a~~~~~~m 127 (245)
+|.+.|++++|...|+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555555443
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.032 Score=38.16 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=38.2
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...|..+-.+|.+.|++++|...|+...+ +.| +...|..+-.+|...|++++|...|++.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 44555666666666777777777766644 223 3456666777777777777777777655
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.84 E-value=0.027 Score=40.31 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHH
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVD 109 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 109 (245)
...+..+-..+.+.|.++.|....+.- ..| +...|..+-.+|...|++++|...|+.... +.| +...|..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHH
Confidence 345555666667777777776653331 233 566777777788888888888888887754 234 4566777888
Q ss_pred HHhccCCHHHHHHHHHhc
Q 043265 110 LYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 110 ~y~~~g~~~~a~~~~~~m 127 (245)
+|...|++++|...|+..
T Consensus 98 ~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 888888888888888765
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.84 E-value=0.004 Score=45.25 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIV 108 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 108 (245)
+...|..+-..+.+.|.++.|.+..... ..| +...|..+-.+|.+.|++++|...|+...+ +.| +...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3456667777777778777776654332 233 567778888888888888888888887755 234 366777888
Q ss_pred HHHhccCCHHHHHHHHHhc
Q 043265 109 DLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 109 ~~y~~~g~~~~a~~~~~~m 127 (245)
.+|.+.|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 8888888888888888766
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.83 E-value=0.0041 Score=50.40 Aligned_cols=148 Identities=10% Similarity=-0.043 Sum_probs=99.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhhhhhHHHHHHHHhc--------CCCC-cHhh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNI----GIFL-DSPDIIELLNVCMDLKLLEAGKRFEND--------GVRP-NWST 67 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~--------~~~p-~~~t 67 (245)
|+.+-..|.+.|++++|++.|.+..+. |-.+ -..+++.+-..|.. |.++.|....+. +-.+ -..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 455667788889999999999986542 2111 13567777788877 888887654222 1111 1467
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcCCCCc------HHHHH
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRD---YDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQIDAS------SVVWE 137 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~------~~~~~ 137 (245)
+..+-..|.+.|++++|...|++...- .+..++ ...+..+..+|...|+.++|...|++....|+ .....
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~ 237 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALE 237 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 888999999999999999999987542 111122 23677778888889999999999987543342 22344
Q ss_pred HHHHHHHhCCCCcc
Q 043265 138 TLEKYAQTEPGLLL 151 (245)
Q Consensus 138 ~li~~~~~~g~~~~ 151 (245)
.++.++ ..|+.+.
T Consensus 238 ~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 238 DLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHH-HTTCHHH
T ss_pred HHHHHH-HhcCHHH
Confidence 555655 4455444
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.83 E-value=0.0097 Score=47.76 Aligned_cols=121 Identities=7% Similarity=-0.085 Sum_probs=85.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hhhhhhHHHHH----HHHhcCCCCcHhhHHHHHHHhcc
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNV-CMDLKLLEAGK----RFENDGVRPNWSTFVGVITACGC 77 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~~~----~~~~~~~~p~~~t~~~ll~~~~~ 77 (245)
..+-..|.+.|++++|..+|++.... .|+.......... +.+.+..+.+. +.... -+.+...+..+-..+..
T Consensus 155 ~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 155 LLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 34567889999999999999998765 3555433332222 34444443333 22222 23467888999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 78 FGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
.|++++|...|.+..+...-..+...+..+...|...|+.++|...|.+
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 9999999999999876322222367889999999999999999887754
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.82 E-value=0.0041 Score=45.19 Aligned_cols=60 Identities=8% Similarity=0.041 Sum_probs=27.0
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...|..+-.+|...|++++|...|+...+ +.| +...|..+-.+|.+.|+.++|...|++.
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444445555555554444432 122 2333444444444555555555444433
No 127
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.82 E-value=0.027 Score=37.28 Aligned_cols=91 Identities=8% Similarity=-0.004 Sum_probs=67.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~ 78 (245)
|..+-..+...|++++|.+.|.+..... +.+...+..+-..+...|.++.+....... ..| +...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3455667788899999999999887653 235677788888888888888776653332 223 567788888888899
Q ss_pred CcHHHHHHHHHHhhh
Q 043265 79 GAVDEGFQHFESVTR 93 (245)
Q Consensus 79 g~~~~a~~~~~~m~~ 93 (245)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999887754
No 128
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.80 E-value=0.0095 Score=50.20 Aligned_cols=142 Identities=9% Similarity=-0.015 Sum_probs=108.5
Q ss_pred hhHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcc
Q 043265 2 LNSELKHLCRERE-VKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGC 77 (245)
Q Consensus 2 ~n~ll~~~~~~g~-~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~ 77 (245)
|+.+-..+.+.|+ +++|++.|++..+.+- -+...|..+-.++.+.|.++.|....+.. ..| +...|..+-.++.+
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 4555667888896 9999999999987643 26788999989999988888776654432 233 67889999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhc-cCCHHHH-----HHHHHhcC-CCC-cHHHHHHHHHHHHhCC
Q 043265 78 FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGR-LQKIAEA-----REFIRNMQ-IDA-SSVVWETLEKYAQTEP 147 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~-~g~~~~a-----~~~~~~m~-~~~-~~~~~~~li~~~~~~g 147 (245)
.|++++|...|+.+.+ +.| +...|+.+-.+|.+ .|..++| ...|++.- ..| +...|+.+-..+...|
T Consensus 213 ~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred cCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 9999999999999876 334 56788999999999 7776777 36665542 344 4677888877777766
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.79 E-value=0.0072 Score=42.13 Aligned_cols=89 Identities=8% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLY 111 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y 111 (245)
.+...=..|.+.|.++.|.+..... ..| +...|..+-.+|.+.|++++|...|+...+ +.| +...|..+-.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHHHHH
Confidence 3444444555666666665543322 222 456666666667777777777777666544 223 345566666667
Q ss_pred hccCCHHHHHHHHHhc
Q 043265 112 GRLQKIAEAREFIRNM 127 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m 127 (245)
.+.|++++|...|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7777777777766654
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.78 E-value=0.016 Score=46.35 Aligned_cols=160 Identities=8% Similarity=-0.061 Sum_probs=113.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC----HHHHHHHHHHhhhhhhHHHHHHH----HhcCC-CCc----HhhH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIG-IFLD----SPDIIELLNVCMDLKLLEAGKRF----ENDGV-RPN----WSTF 68 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~~~~~----~~~~~-~p~----~~t~ 68 (245)
...+..+...|++++|.+++.+..+.. ..|+ ...+..+...+...+.++.|... ..... .++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 346778899999999999999987644 3455 45888888888777767766553 22111 222 3368
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhh---c-CCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-------CCCc-HHH
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRD---Y-DINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-------IDAS-SVV 135 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~---~-~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-------~~~~-~~~ 135 (245)
+.+-..|...|++++|...|++..+. . +..|. ..+|..+-..|.+.|++++|...+++.- ..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999988631 1 22333 3478899999999999999999887542 1122 456
Q ss_pred HHHHHHHHHhCCC-Cccccccc--cccccc
Q 043265 136 WETLEKYAQTEPG-LLLGEPSS--SLRLSN 162 (245)
Q Consensus 136 ~~~li~~~~~~g~-~~~~~~~~--~~~~~~ 162 (245)
|..+=.++...|+ .+.|.... ++.+..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 6666678888885 47776655 555443
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.75 E-value=0.033 Score=40.14 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=73.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~ 78 (245)
|..+-..|.+.|++++|++.|.+..+..- -+...|..+-.+|.+.|.++.|....+.. +.| +...|..+-.+|.+.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455678899999999999999987642 26788999999999999988887654332 234 478899999999999
Q ss_pred CcHHHHHHHHHHhhhh
Q 043265 79 GAVDEGFQHFESVTRD 94 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~ 94 (245)
|++++|.+.|++..+-
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988653
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.74 E-value=0.029 Score=43.00 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCH-HHHHHHHHHhhh------------------hhhHHHHHHHHhc--CC
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIF-LDS-PDIIELLNVCMD------------------LKLLEAGKRFEND--GV 61 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~-p~~-~t~~~ll~~~~~------------------~~~~~~~~~~~~~--~~ 61 (245)
.+-.+|.+.|++++|+..|++..+..-. |.. ..+-.+-.++.+ .|..+.|....+. ..
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999865422 221 123223333322 3566666554332 22
Q ss_pred CCcHh-hH-----------------HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHH
Q 043265 62 RPNWS-TF-----------------VGVITACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEARE 122 (245)
Q Consensus 62 ~p~~~-t~-----------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~ 122 (245)
.|+.. .+ -.+-..|.+.|++++|...|+.+.+...-.|. ...+..+..+|.+.|+.++|.+
T Consensus 126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 34322 22 23445678899999999999998764322221 2567889999999999999999
Q ss_pred HHHhcC
Q 043265 123 FIRNMQ 128 (245)
Q Consensus 123 ~~~~m~ 128 (245)
.++.+.
T Consensus 206 ~~~~l~ 211 (225)
T 2yhc_A 206 VAKIIA 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.74 E-value=0.014 Score=52.98 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~ 80 (245)
.+-..|.+.|++++|++.|++..+.+- -+...|..+-.+|.+.|.+++|....+. ...| +...|..+-.++.+.|+
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN 516 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 345678899999999999999987532 2567888888889999999988765443 2344 56778899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHHHHHhCCC
Q 043265 81 VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEKYAQTEPG 148 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~~~~~~g~ 148 (245)
+++ .+.|++..+ +.| +...|..+-.+|.+.|+.++|...|++.. ..|+ ...|..+-.++...+.
T Consensus 517 ~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 517 TDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999 999988765 234 45788899999999999999999999886 5665 4556555566555444
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.71 E-value=0.027 Score=39.10 Aligned_cols=90 Identities=4% Similarity=0.017 Sum_probs=72.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~ 83 (245)
..|.+.|++++|++.|++..+.+ +.+...|..+-.+|.+.|.++.|....+.. +.| +...|..+-.++...|++++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHH
Confidence 46889999999999999988754 236788999999999999888887654332 233 57789999999999999999
Q ss_pred HHHHHHHhhhhcCCCcc
Q 043265 84 GFQHFESVTRDYDINPT 100 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~ 100 (245)
|.+.|+...+ +.|+
T Consensus 100 A~~~~~~al~---l~P~ 113 (126)
T 4gco_A 100 AQRAYEDALQ---VDPS 113 (126)
T ss_dssp HHHHHHHHHH---HCTT
T ss_pred HHHHHHHHHH---HCcC
Confidence 9999998865 4565
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.69 E-value=0.015 Score=46.49 Aligned_cols=132 Identities=7% Similarity=-0.065 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhc-----CCCCcH----hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc---
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFEND-----GVRPNW----STFVGVITACGCFGAVDEGFQHFESVTRDYDINPT--- 100 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~-----~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--- 100 (245)
....+...+..+...|.++.+....+. ...|+. ..+..+...+...|++++|...|+....-..-.++
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 456666677778888888887665332 223332 23445777778888999999999988652111233
Q ss_pred -hHHHHHHHHHHhccCCHHHHHHHHHhcC-----C---CCc-HHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 101 -LEHFLGIVDLYGRLQKIAEAREFIRNMQ-----I---DAS-SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 101 -~~~~~~li~~y~~~g~~~~a~~~~~~m~-----~---~~~-~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..+|+.+-.+|.+.|++++|...|++.- . .+. ..+|..+-..|...|+.+.|.... ++++.++.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 3368999999999999999999887653 1 122 346777888999999999988776 66554433
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.66 E-value=0.0059 Score=43.87 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=77.4
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLE 140 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li 140 (245)
+...+..+-..+.+.|++++|...|+.... ..| +...|..+-.+|.+.|++++|...|++.- ..| +...|..+-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 455677778889999999999999998865 234 56778889999999999999999998774 344 456777777
Q ss_pred HHHHhCCCCccccccc--cccccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.++...|+.+.|...+ ++++.|+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 8889999999988776 66665543
No 137
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.64 E-value=0.026 Score=44.07 Aligned_cols=129 Identities=12% Similarity=-0.001 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC-HHHHHHHHHHhhh--------hhhHHHHHHHHhcCC--CCc-HhhH--
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGI-FLD-SPDIIELLNVCMD--------LKLLEAGKRFENDGV--RPN-WSTF-- 68 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~-~~t~~~ll~~~~~--------~~~~~~~~~~~~~~~--~p~-~~t~-- 68 (245)
.+-..|.+.|++++|...|++..+..- .|. ...+..+-.++.. .|.++.|....+.-+ .|+ ....
T Consensus 57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 57 YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 344678899999999999999987532 222 4456666667777 788888766543322 233 2333
Q ss_pred ---------------HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhcc----------CCHHHHHH
Q 043265 69 ---------------VGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRL----------QKIAEARE 122 (245)
Q Consensus 69 ---------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~----------g~~~~a~~ 122 (245)
-.+-..|.+.|++++|...|+...+...-.| ....+..+..+|.+. |++++|..
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 4456778899999999999999876422222 234667778888866 88999999
Q ss_pred HHHhcC-CCCc
Q 043265 123 FIRNMQ-IDAS 132 (245)
Q Consensus 123 ~~~~m~-~~~~ 132 (245)
.|++.. ..|+
T Consensus 217 ~~~~~~~~~p~ 227 (261)
T 3qky_A 217 LYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCCC
Confidence 998774 3444
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.61 E-value=0.0068 Score=52.60 Aligned_cols=115 Identities=4% Similarity=-0.024 Sum_probs=81.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a 84 (245)
.|.+.|++++|++.|++..+.. .-+...|..+-.+|.+.|.+++|.+..+.. ..| +...|..+-.+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3567899999999999988753 224788888888999999888887654332 234 567888888899999999999
Q ss_pred HHHHHHhhhhcCCCcchHHHHHHHHH--HhccCCHHHHHHHHH
Q 043265 85 FQHFESVTRDYDINPTLEHFLGIVDL--YGRLQKIAEAREFIR 125 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~~~~~~li~~--y~~~g~~~~a~~~~~ 125 (245)
.+.|++..+-..- +...+..+-.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999887653222 22344444444 888899999999887
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.60 E-value=0.037 Score=41.27 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
+=..+.+.|++++|.+.|.+..+..- .|+. ... ..... ...+ ....|..+-.+|.+.|++++
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~-----~~~~~--~~~~-------~~~~~~~la~~~~~~~~~~~ 106 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEW---DDQ-----ILLDK--KKNI-------EISCNLNLATCYNKNKDYPK 106 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---CCH-----HHHHH--HHHH-------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccccc---chh-----hHHHH--HHHH-------HHHHHHHHHHHHHHhcCHHH
Confidence 34567788999999999998876421 1110 000 00000 0000 13455666666777777777
Q ss_pred HHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcc
Q 043265 84 GFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~ 151 (245)
|...++...+- .| +...|..+-.+|...|++++|...|++.. ..| +...+..+-..+...++.+.
T Consensus 107 A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 107 AIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77777766542 23 45566667777777777777777776552 233 34445444455544444333
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.59 E-value=0.0067 Score=42.95 Aligned_cols=88 Identities=8% Similarity=0.009 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHh
Q 043265 37 IIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYG 112 (245)
Q Consensus 37 ~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~ 112 (245)
+..+-..+.+.|.++.|....+. ...| +...|..+-.+|.+.|++++|...|+....- .| +...|..+-.+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHH
Confidence 33344445555655555544322 1222 4555555666666666666666666655441 22 2344555666666
Q ss_pred ccCCHHHHHHHHHhc
Q 043265 113 RLQKIAEAREFIRNM 127 (245)
Q Consensus 113 ~~g~~~~a~~~~~~m 127 (245)
..|++++|...|+..
T Consensus 98 ~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 98 QLGDLDGAESGFYSA 112 (142)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666554
No 141
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.58 E-value=0.0031 Score=43.10 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=37.3
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...+..+-.+|...|++++|...|++..+. .| +...+..+-.+|.+.|+.++|...|++.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555556666667777777777666542 23 3455666677777777777777766654
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.55 E-value=0.044 Score=38.56 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=70.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~ 81 (245)
+-..+.+.|++++|.+.|.+....+- .+...|..+-.+|.+.|.++.|....+.. ..| +...+..+-.+|...|++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34567889999999999999887542 36778888888899999998887764432 223 567788888999999999
Q ss_pred HHHHHHHHHhhh
Q 043265 82 DEGFQHFESVTR 93 (245)
Q Consensus 82 ~~a~~~~~~m~~ 93 (245)
++|.+.|+...+
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.55 E-value=0.025 Score=46.97 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=88.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--------CCCCcHhhH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKN-----IGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--------GVRPNWSTF 68 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--------~~~p~~~t~ 68 (245)
++.+=..|...|++++|.+.|.+..+ .. .....++..+-..|.+.|.++.|....+. +-+.....+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455678889999999999999876 32 22367788888889999988888765332 222334566
Q ss_pred HHHHHHhcccCc---HHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 69 VGVITACGCFGA---VDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 69 ~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+-..+...++ +.+|...++.. +..|+ ...+..+-..|.+.|+.++|...|++.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777888888 88888887753 22333 356678999999999999999999765
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.55 E-value=0.025 Score=39.28 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=27.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKR 55 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 55 (245)
..+.+.|++++|++.|.+..+..- -+...|+.+-.+|.+.|.++.|.+
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~ 63 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQ 63 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHH
Confidence 456777888888888887765421 134445555455555554444433
No 145
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.48 E-value=0.031 Score=46.00 Aligned_cols=150 Identities=9% Similarity=-0.124 Sum_probs=101.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHhhhhhhHHHHHHHHhcCCC-----Cc----HhhHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSP----DIIELLNVCMDLKLLEAGKRFENDGVR-----PN----WSTFVGVIT 73 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~~~~~-----p~----~~t~~~ll~ 73 (245)
..+...|++++|...+.+.....-..+.. .++.+-..+...|.++.+.+.....+. ++ ..++..+-.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34567899999999999987654222332 445555667777888877665322111 11 234566777
Q ss_pred HhcccCcHHHHHHHHHHhhhh---cCCC--cc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-----CCC--cHHHHHHHH
Q 043265 74 ACGCFGAVDEGFQHFESVTRD---YDIN--PT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-----IDA--SSVVWETLE 140 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~---~~~~--p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-----~~~--~~~~~~~li 140 (245)
.+...|++++|.+.+++.... .+.. |. ...+..+-..|...|++++|...+++.- ..+ ...+|..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 888999999999999877542 1222 32 3556778889999999999999997642 111 134566666
Q ss_pred HHHHhCCCCccccccc
Q 043265 141 KYAQTEPGLLLGEPSS 156 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~ 156 (245)
..+...|+.+.|....
T Consensus 182 ~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 182 QCSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 7888889988877655
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.011 Score=40.53 Aligned_cols=94 Identities=5% Similarity=-0.110 Sum_probs=75.2
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEK 141 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~ 141 (245)
...|..+-..+.+.|++++|...|++..+. .| +...|..+-.+|.+.|++++|...|++.- ..| +...|..+-.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 455667777889999999999999988652 34 56788999999999999999999998764 344 4667777778
Q ss_pred HHHhCCCCccccccc--ccccc
Q 043265 142 YAQTEPGLLLGEPSS--SLRLS 161 (245)
Q Consensus 142 ~~~~~g~~~~~~~~~--~~~~~ 161 (245)
++...|+.+.|...+ ++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 889999999887766 66655
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.43 E-value=0.056 Score=37.20 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=60.3
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLE 140 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li 140 (245)
+...|..+-..+...|++++|...|...... .| +...|..+-.+|.+.|++++|...|+... ..| +...|..+-
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4566666666777777777777777766442 22 34566667777777777777777776553 223 355566666
Q ss_pred HHHHhCCCCccccccc--ccccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
..+...|+.+.|...+ ++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666777777666555 5555444
No 148
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.042 Score=36.26 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=65.0
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-------H
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-------S 133 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-------~ 133 (245)
++...+..+-..+.+.|++++|.+.|++..+. .| +...|..+-.+|.+.|++++|...|++.- ..|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 35667788888899999999999999988652 34 56778889999999999999999998763 4555 3
Q ss_pred HHHHHHHHHHHhCCCCccc
Q 043265 134 VVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 134 ~~~~~li~~~~~~g~~~~~ 152 (245)
..+..+-.++...|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhHhhh
Confidence 4444444556565655554
No 149
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.43 E-value=0.011 Score=53.64 Aligned_cols=153 Identities=5% Similarity=-0.106 Sum_probs=104.1
Q ss_pred HHHHHcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCC-------------C---------
Q 043265 7 KHLCREREVKAAL-EVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVR-------------P--------- 63 (245)
Q Consensus 7 ~~~~~~g~~~~A~-~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-------------p--------- 63 (245)
.-+-+.|+.++|. ++|.+.... ++.+...|-..+...-+.|.++.++++.+..+. |
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 3445668888886 999988753 344666677777777778888888765333221 3
Q ss_pred ---cHhhHHHHHHHhcccCcHHHHHHHHHHhhhh-cCCCcchHHHHHHHHHHhcc-CCHHHHHHHHHhcC--CCCcHHHH
Q 043265 64 ---NWSTFVGVITACGCFGAVDEGFQHFESVTRD-YDINPTLEHFLGIVDLYGRL-QKIAEAREFIRNMQ--IDASSVVW 136 (245)
Q Consensus 64 ---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~y~~~-g~~~~a~~~~~~m~--~~~~~~~~ 136 (245)
....|...+....+.|.++.|..+|....+. ....+.+....+.+ --+. ++.+.|.++|+..- +..+...|
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l--E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI--EYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH--HHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 2346888888888899999999999988763 12233333333333 3344 45899999998663 34466778
Q ss_pred HHHHHHHHhCCCCccccccc--cccccc
Q 043265 137 ETLEKYAQTEPGLLLGEPSS--SLRLSN 162 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~~~~~--~~~~~~ 162 (245)
...+......|+.+.++.++ ++...+
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 88888888888888888777 555444
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.40 E-value=0.017 Score=41.23 Aligned_cols=117 Identities=8% Similarity=-0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHH
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLY 111 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y 111 (245)
..|..+-..+...|.++.|....... . +.+...+..+-..+...|++++|.+.++...+. ...+...|..+-.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44566666666777777776543332 2 235677777788888888888888888877552 122456777788888
Q ss_pred hccCCHHHHHHHHHhcC-CCC-cHHHHHHHH--HHHHhCCCCcccc
Q 043265 112 GRLQKIAEAREFIRNMQ-IDA-SSVVWETLE--KYAQTEPGLLLGE 153 (245)
Q Consensus 112 ~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li--~~~~~~g~~~~~~ 153 (245)
.+.|++++|...|++.. ..| +...+..+- ..+...|+.+.|.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887663 223 333442222 2244445555443
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.28 E-value=0.052 Score=46.65 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNI 28 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~ 28 (245)
+.+=..|.+.|++++|...|.+..+.
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~ 297 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSW 297 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33446788899999999999998764
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.27 E-value=0.052 Score=39.17 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAV 81 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~ 81 (245)
+=..+.+.|++++|++.|++....+- -+...|..+-.+|...|.+++|....+. .+.| +...|..+-.+|.+.|++
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 44577889999999999999987642 3678899999999999999988775433 2344 477888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcchH
Q 043265 82 DEGFQHFESVTRDYDINPTLE 102 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~ 102 (245)
++|...|+...+ +.|+..
T Consensus 121 ~eA~~~~~~al~---l~~~~~ 138 (151)
T 3gyz_A 121 LKAKECFELVIQ---HSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHH---HCCCHH
T ss_pred HHHHHHHHHHHH---hCCCHH
Confidence 999999998866 346643
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.23 E-value=0.019 Score=41.90 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=78.0
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHH-HhccCCH--HHHHHHHHhcC-CCC-cHHHH
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDL-YGRLQKI--AEAREFIRNMQ-IDA-SSVVW 136 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-y~~~g~~--~~a~~~~~~m~-~~~-~~~~~ 136 (245)
.+...|..+-..|...|++++|...|+...+. .| +...+..+-.+ |.+.|+. ++|...|++.. ..| +...|
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 118 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence 46788899999999999999999999988652 23 45677778888 8889998 99999998774 344 46677
Q ss_pred HHHHHHHHhCCCCccccccc--cccccccc
Q 043265 137 ETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..+-..+...|+.+.|...+ ++++.|+.
T Consensus 119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 119 MLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 77778899999999888776 66665543
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.13 Score=43.10 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=30.0
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCC---Cc-chHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDI---NP-TLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~p-~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
.++..+...|...|++++|..++++......- .| ....|..++..|...|++++|..++++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34455555555556666665555544321111 11 123455555566666666655555543
No 155
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.18 E-value=0.14 Score=38.70 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=65.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh----hHHHHHHHHhcCCCC-cHhhHHHHHHHhcc----
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK----LLEAGKRFENDGVRP-NWSTFVGVITACGC---- 77 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~---- 77 (245)
..|...+++++|.++|.+..+.| ++..+..|=..|.. + +.+.+.+..+....+ +...+..|-..|..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGS
T ss_pred HHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 34555677777777777776665 34455555555555 4 555555443332222 34455555555555
Q ss_pred cCcHHHHHHHHHHhhhhcCCC-cchHHHHHHHHHHhc----cCCHHHHHHHHHhc
Q 043265 78 FGAVDEGFQHFESVTRDYDIN-PTLEHFLGIVDLYGR----LQKIAEAREFIRNM 127 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~y~~----~g~~~~a~~~~~~m 127 (245)
.++.++|.+.|+...+ .+.. .....+..|=.+|.. .++.++|...|++-
T Consensus 102 ~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 102 ATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp SCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6677777777766644 2221 014455566666666 56677777777655
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.13 E-value=0.18 Score=37.97 Aligned_cols=133 Identities=8% Similarity=-0.109 Sum_probs=89.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCc-
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGA- 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~- 80 (245)
+-..|.+.|++++|+..|++..+.+- -+...|..+-..|...|.++.|....+.- ..| +...|..+-..|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 55778899999999999999987642 25788999999999999999887764432 344 46677777777765554
Q ss_pred -HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHH
Q 043265 81 -VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEK 141 (245)
Q Consensus 81 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~ 141 (245)
.+.+...+.... ...|....+-.+-.++...|+.++|...|++.- ..|+......+..
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344455554332 122222233334445566789999999998874 6788766555443
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.09 E-value=0.071 Score=36.23 Aligned_cols=94 Identities=7% Similarity=-0.045 Sum_probs=49.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a 84 (245)
+-..+.+.|++++|.+.|.+..+.. |+.. .....+..+-.++.+.|++++|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~---------------------------~~~~~~~~lg~~~~~~~~~~~A 58 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGV---------------------------YTPNALYWLGESYYATRNFQLA 58 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSST---------------------------THHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCc---------------------------ccHHHHHHHHHHHHHhccHHHH
Confidence 3356677888888888888876543 2210 0001233333444555666666
Q ss_pred HHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 85 FQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...|+.......-.+. ...+..+-.+|.+.|+.++|...|+..
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 59 EAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666655432111100 334455556666666666666666555
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.08 E-value=0.012 Score=40.31 Aligned_cols=92 Identities=13% Similarity=-0.045 Sum_probs=67.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcch----HHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc----HHHHHHHH
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINPTL----EHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS----SVVWETLE 140 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~----~~~~~~li 140 (245)
.+-..+...|++++|...|+...+. .|+. ..+..+-.+|.+.|++++|...|++.- ..|+ ...+..+-
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3455677899999999999988663 2332 467788899999999999999998773 2344 44566666
Q ss_pred HHHHhCCCCccccccc--cccccccc
Q 043265 141 KYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
..+...|+.+.|...+ ++...|+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 7888889988887766 55554443
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.06 E-value=0.02 Score=45.77 Aligned_cols=92 Identities=5% Similarity=-0.018 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIV 108 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 108 (245)
+...+..+-..+.+.|.++.|....... ..| +...|..+-.+|.+.|++++|...++...+ +.| +...+..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 4456666777777778777776654432 234 567777788888888888888888877644 344 456677788
Q ss_pred HHHhccCCHHHHHHHHHhc
Q 043265 109 DLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 109 ~~y~~~g~~~~a~~~~~~m 127 (245)
.+|.+.|++++|...|++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888765
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.97 E-value=0.025 Score=49.28 Aligned_cols=121 Identities=8% Similarity=-0.057 Sum_probs=84.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhc---CC---CCC-HHHHHHHHHHhhhhhhHHHHHHHHhc----------CCCCc-HhhHH
Q 043265 8 HLCREREVKAALEVMDKLKNI---GI---FLD-SPDIIELLNVCMDLKLLEAGKRFEND----------GVRPN-WSTFV 69 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~---g~---~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~----------~~~p~-~~t~~ 69 (245)
.+-..|++++|+.++.+..+. -+ .|+ ..+++.|..+|...|.+++|..+.+. .-.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999998887532 12 233 46788888888888988888765221 23344 56788
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhh----hcCCC-cc-hHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 70 GVITACGCFGAVDEGFQHFESVTR----DYDIN-PT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~-p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
.|-..|...|++++|+.++++..+ ..|-. |+ ..+.+.+-.++...|..++|+.+|.+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999988888875532 12322 33 3455667778888888888888887764
No 161
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.94 E-value=0.15 Score=43.23 Aligned_cols=160 Identities=13% Similarity=0.015 Sum_probs=84.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-------------------hHHHHHHHHhc--C
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-------------------LLEAGKRFEND--G 60 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-------------------~~~~~~~~~~~--~ 60 (245)
++.+-..|.+.|++++|.+.|.+..+..- -+..++..+-..|...+ ..+.+....+. .
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34455677888888888888888776531 23455555544443221 12222221111 1
Q ss_pred C-CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchH--HHHHHH-HHHhccCCHHHHHHHHHhcC-CC-----
Q 043265 61 V-RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLE--HFLGIV-DLYGRLQKIAEAREFIRNMQ-ID----- 130 (245)
Q Consensus 61 ~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li-~~y~~~g~~~~a~~~~~~m~-~~----- 130 (245)
. +.+..++..+-..|...|++++|.+.|++..+ ....|... .+..+- -.+...|+.++|...|++.- +.
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 2 23456677888888999999999999987755 22222211 122221 12346788888888775431 22
Q ss_pred --------------------CcHHHHHHHHHHHHhCCCCccccccc--ccccccc
Q 043265 131 --------------------ASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 131 --------------------~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
.+..+|+.+=..|...|+.+.|...+ ++++.+.
T Consensus 408 ~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 408 KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 23455666666677777777766665 5555443
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.87 E-value=0.03 Score=46.03 Aligned_cols=117 Identities=9% Similarity=-0.042 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhc--CCCCc----------------HhhHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 043265 34 SPDIIELLNVCMDLKLLEAGKRFEND--GVRPN----------------WSTFVGVITACGCFGAVDEGFQHFESVTRDY 95 (245)
Q Consensus 34 ~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 95 (245)
...|..+-..|.+.|.++.|....+. .+.|+ ...|..+-.+|.+.|++++|...|+...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 45677777788888888888665332 22343 47889999999999999999999998865
Q ss_pred CCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcccc
Q 043265 96 DINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 96 ~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~~~ 153 (245)
+.| +...|..+-.+|.+.|++++|...|++.. +.| +...|..+-..+...|+.+.+.
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 234 56788889999999999999999998764 344 4566766667777777766653
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.76 E-value=0.023 Score=39.15 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=29.1
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
...|..+-.++...|+.++|...|+...+ +.| +...+..+-.+|.+.|+.++|...|++.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444455555555555555554433 223 2334445555555555555555555443
No 164
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.72 E-value=0.11 Score=32.64 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=56.9
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLE 140 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li 140 (245)
+...+..+-..+...|++++|...|++.... .| +...+..+-.+|.+.|++++|...|++.. ..| +...+..+-
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3566777778888999999999999887652 23 46678888899999999999999998763 334 344554444
Q ss_pred HHHH
Q 043265 141 KYAQ 144 (245)
Q Consensus 141 ~~~~ 144 (245)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.62 E-value=0.25 Score=42.38 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHhc
Q 043265 12 EREVKAALEVMDKLKNI 28 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~ 28 (245)
.+++++|.++|.+..+.
T Consensus 92 ~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK 108 (490)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 44444555555444443
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.48 E-value=0.017 Score=40.59 Aligned_cols=122 Identities=9% Similarity=-0.024 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCC-----Cc----HhhHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-ch
Q 043265 35 PDIIELLNVCMDLKLLEAGKRFENDGVR-----PN----WSTFVGVITACGCFGAVDEGFQHFESVTRDY---DINP-TL 101 (245)
Q Consensus 35 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~-----p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~ 101 (245)
.++..+-..|...|.++.+.......+. ++ ..++..+-..+...|++++|.+.+++...-. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566666677777777777654222111 11 2478888899999999999999998765421 1111 14
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcC-----C-CC--cHHHHHHHHHHHHhCCCCccccccc
Q 043265 102 EHFLGIVDLYGRLQKIAEAREFIRNMQ-----I-DA--SSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 102 ~~~~~li~~y~~~g~~~~a~~~~~~m~-----~-~~--~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
..+..+-..|...|++++|...+++.. . .+ ...++..+-..+...|+.+.|....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 567888899999999999999887652 1 11 1345566667788888888766544
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.48 E-value=0.14 Score=34.93 Aligned_cols=87 Identities=5% Similarity=-0.119 Sum_probs=70.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~ 82 (245)
-..+.+.|++++|...|++..+..- -+...|..+-.++.+.|.++.|....+. ...| +...+..+-.++.+.|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3578899999999999999987532 2677888888888899998888776444 2344 5678888999999999999
Q ss_pred HHHHHHHHhhh
Q 043265 83 EGFQHFESVTR 93 (245)
Q Consensus 83 ~a~~~~~~m~~ 93 (245)
+|...|+...+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 168
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.35 E-value=0.28 Score=37.03 Aligned_cols=122 Identities=7% Similarity=-0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-cHhhHHHHHHHhcccC----cHHHHHHHHHH
Q 043265 16 KAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP-NWSTFVGVITACGCFG----AVDEGFQHFES 90 (245)
Q Consensus 16 ~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g----~~~~a~~~~~~ 90 (245)
.+|.++|.+..+.| ++..+..+=..|...++++.|.+..+....+ +...+..|=..|.. + +.++|.+.|+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35778888888876 5677777778888888888887654433322 46666777777777 6 89999999998
Q ss_pred hhhhcCCCcchHHHHHHHHHHhc----cCCHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHh
Q 043265 91 VTRDYDINPTLEHFLGIVDLYGR----LQKIAEAREFIRNMQ-IDAS---SVVWETLEKYAQT 145 (245)
Q Consensus 91 m~~~~~~~p~~~~~~~li~~y~~----~g~~~~a~~~~~~m~-~~~~---~~~~~~li~~~~~ 145 (245)
..+ .| +...+..|-.+|.. .++.++|...|++-- ..|+ +..+..|=..|..
T Consensus 79 A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 79 AVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 865 33 56677778888877 889999999998875 2332 5666666666655
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.33 E-value=0.12 Score=34.93 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHH
Q 043265 11 REREVKAALEVMDKLKNIGIF-L-DSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 11 ~~g~~~~A~~lf~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
..|++++|+..|.+..+.+.. | +...|..+-..|.+.|.++.|....+.. ..| +...+..+-.++.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 457889999999998876521 3 3567778888888889888887754432 233 5778888889999999999999
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHHHhc
Q 043265 86 QHFESVTRDYDINPTLEHFLGIVDLYGR 113 (245)
Q Consensus 86 ~~~~~m~~~~~~~p~~~~~~~li~~y~~ 113 (245)
..|+.......-.|+...|...|..|.+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 9999876644444455555555555443
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.30 E-value=0.096 Score=38.94 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=77.7
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--------------hHHHHHHHHHHhccCCHHHHHHHHHhcC-
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT--------------LEHFLGIVDLYGRLQKIAEAREFIRNMQ- 128 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~y~~~g~~~~a~~~~~~m~- 128 (245)
....+..+-..+.+.|++++|.+.|.+...-..-.|+ ...|..+-.+|.+.|++++|...|+...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556677777888999999999999988652222221 2678889999999999999999998764
Q ss_pred CC-CcHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 129 ID-ASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 129 ~~-~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.. .+...|..+-.++...|+.+.|...+ ++++.|+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 33 45677777778889999999988777 77777765
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.27 E-value=0.15 Score=36.53 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 7 KHLCREREVKAALEVMDKLKNIG------IFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
..+.+.|++++|++.|.+....- -.|+...+ .++ -+-+...|..+-.+|.+.|+
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~----------------~~~----~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW----------------VEL----DRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH----------------HHH----HHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH----------------HHH----HHHHHHHHHHHHHHHHhcCc
Confidence 46777888888888888865430 00111100 000 11235678888889999999
Q ss_pred HHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHH-HHHHHHHHH
Q 043265 81 VDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSV-VWETLEKYA 143 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~-~~~~li~~~ 143 (245)
+++|...++...+ +.| +...|..+-.+|...|++++|...|+... +.|+.. .....+..+
T Consensus 79 ~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 79 LHEAEETSSEVLK---REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999988765 234 46778889999999999999999998764 466644 444444333
No 172
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.27 E-value=0.58 Score=40.08 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 043265 12 EREVKAALEVMDKLKNIG 29 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g 29 (245)
.+++++|.++|.+..+.|
T Consensus 128 ~~~~~~A~~~~~~a~~~~ 145 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG 145 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 344444444444444443
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.25 E-value=0.18 Score=42.08 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=83.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-cHhhHHHHHHHhcccCcH
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRP-NWSTFVGVITACGCFGAV 81 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~ 81 (245)
..+=..|.+.|++++|++.|.+..+.- |. . ......+...+ ..| +...|..+-.+|.+.|++
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~---~-------~~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~ 289 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYV--EG---S-------RAAAEDADGAK-----LQPVALSCVLNIGACKLKMSDW 289 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--HH---H-------HHHSCHHHHGG-----GHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHh--hc---C-------ccccChHHHHH-----HHHHHHHHHHHHHHHHHhccCH
Confidence 344567788899999999998876520 00 0 00011111111 122 456788888888889999
Q ss_pred HHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhCCCCcc
Q 043265 82 DEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA-SSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~-~~~~~~~li~~~~~~g~~~~ 151 (245)
++|.+.+++..+ +.| +...|..+-.+|.+.|++++|...|++.. ..| +...+..+-..+...++.+.
T Consensus 290 ~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 290 QGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999987754 344 46677788888999999999999887763 344 44555555565555544443
No 174
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.25 E-value=0.12 Score=33.99 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=59.9
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC----CCCcHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ----IDASSVVWET 138 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~----~~~~~~~~~~ 138 (245)
+...+..+-..|.+.|++++|...|+...+. .| +...|..+-.+|.+.|++++|...|++.- ..++.....-
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 5677888888999999999999999988663 34 35678889999999999999999997653 1345555555
Q ss_pred HHHHHHhC
Q 043265 139 LEKYAQTE 146 (245)
Q Consensus 139 li~~~~~~ 146 (245)
+-..+...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555443
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.19 E-value=0.11 Score=35.97 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--------hHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT--------LEHF 104 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~~ 104 (245)
.+..+=..+.+.|.++.|.+.... .+.| +...|+.+-.+|.+.|++++|.+.|+...+ +.|+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHHHH
Confidence 444455566677777777654332 2234 467788888888888888888888876643 1121 2356
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHH
Q 043265 105 LGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWE 137 (245)
Q Consensus 105 ~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~ 137 (245)
..+=.+|...|++++|.+.|++-- ..||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 666677888888888888887642 345654433
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.18 E-value=0.2 Score=39.84 Aligned_cols=90 Identities=8% Similarity=-0.062 Sum_probs=72.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhc--CCCC-cHhhHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFEND--GVRP-NWSTFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~--~~~p-~~~t~~~ll~~~~~~g 79 (245)
..+-..+.+.|++++|+..|.+.....- -+...|..+-.+|.+.|.++.|....+. ...| +...+..+-.++...|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445678899999999999999887532 2678889999999999999998876544 3344 5778888999999999
Q ss_pred cHHHHHHHHHHhhh
Q 043265 80 AVDEGFQHFESVTR 93 (245)
Q Consensus 80 ~~~~a~~~~~~m~~ 93 (245)
++++|...|....+
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987754
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.65 E-value=0.11 Score=43.41 Aligned_cols=97 Identities=10% Similarity=-0.005 Sum_probs=71.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhh-------------cCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCC-
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRD-------------YDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDA- 131 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-------------~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~- 131 (245)
+..+-..+.+.|++++|.+.|++..+- ....| +...|..+-.+|.+.|++++|...+++.- ..|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 444555666777777777777765430 00223 45788899999999999999999998763 445
Q ss_pred cHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 132 SSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
+...|..+-.++...|+.+.|...+ ++++.|+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4667777778899999999988777 77777765
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.59 E-value=0.11 Score=42.70 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=73.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQ 86 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 86 (245)
..+.+.|++++|...|.+..... |+... +...+..+.+..-. ....|..+-.+|.+.|++++|..
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l------~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV------KNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH------HTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566788888888888876542 33321 12223333332211 12378888899999999999999
Q ss_pred HHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH-HHHHHHH
Q 043265 87 HFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS-VVWETLE 140 (245)
Q Consensus 87 ~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~-~~~~~li 140 (245)
.++...+ +.| +...|..+-.+|...|++++|...|++.. +.|+. ..+..+-
T Consensus 252 ~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 252 HCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9998865 234 56788899999999999999999999875 45543 3344333
No 179
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.49 E-value=0.21 Score=33.27 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=44.3
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
+...+..+-..|...|++++|...|+...+. .| +...|..+-.+|.+.|+.++|...|++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777777888888888888776542 23 3556777778888888888888887765
No 180
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.23 E-value=0.78 Score=39.79 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
+.+.|..+|+...+..+-.| ..+...++...+.|+.+.|+.+|++.. .....|...+..=..+|+.+.+..+.
T Consensus 335 d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58888888887766433222 345667777778888888888888874 35778888888777888877765543
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.15 E-value=0.12 Score=42.35 Aligned_cols=97 Identities=9% Similarity=-0.099 Sum_probs=73.1
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchH------------------HHHHHHHHHhccCCHHHHHHHHHh
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLE------------------HFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
...+..+-..+.+.|++++|...|..... +.|+.. .|..+-.+|.+.|++++|...|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34466777788899999999999987654 334433 788899999999999999999987
Q ss_pred cC-CCC-cHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 127 MQ-IDA-SSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 127 m~-~~~-~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.- ..| +...|..+-.+|...|+++.|...+ ++++.|+.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 63 344 5677888889999999999988777 77666654
No 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.09 E-value=0.41 Score=40.84 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=39.8
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhh----hc-CCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTR----DY-DINPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~-~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+++.+...|...|++++|+.++++... .. .-.|+ ..+++.|-..|...|++++|+.++++.
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566666666666666666666654432 12 23344 366777888888888888888777644
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.038 Score=36.47 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=20.8
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
+...|..+-.++.+.|++++|.+.|+...+
T Consensus 37 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 37 NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345566666777777788888888776643
No 184
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.04 E-value=0.27 Score=42.08 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=43.7
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhh----hcC-CCcc-hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTR----DYD-INPT-LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..+++.|..+|...|++++|+.++++..+ ..| -.|+ ..+|+.|-..|...|++++|+.++++-
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 46677777777777777777777765532 123 2355 366888888888888888888877654
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.96 E-value=0.18 Score=43.24 Aligned_cols=84 Identities=2% Similarity=0.001 Sum_probs=46.5
Q ss_pred HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCc-HHHHHHHHH
Q 043265 65 WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDAS-SVVWETLEK 141 (245)
Q Consensus 65 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~-~~~~~~li~ 141 (245)
...|..+-.+|.+.|++++|...|+...+ +.| +...|..+-.+|.+.|++++|...|++.. +.|+ ...|..+-.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566666666666666666666666544 223 34556666666666666666666666552 3333 334444445
Q ss_pred HHHhCCCCcc
Q 043265 142 YAQTEPGLLL 151 (245)
Q Consensus 142 ~~~~~g~~~~ 151 (245)
++...++.+.
T Consensus 394 ~~~~~~~~~~ 403 (457)
T 1kt0_A 394 CQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.82 E-value=0.19 Score=43.36 Aligned_cols=110 Identities=8% Similarity=-0.015 Sum_probs=77.5
Q ss_pred HhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHH
Q 043265 43 VCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIA 118 (245)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~ 118 (245)
.+.+.|.+++|.+..+.. ..| +...|..+-.+|.+.|++++|.+.+++..+ +.| +...|..+-.+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567777776653332 234 478899999999999999999999998865 344 4678889999999999999
Q ss_pred HHHHHHHhcC-CCCc-HHHHHHHHHH--HHhCCCCcccccc
Q 043265 119 EAREFIRNMQ-IDAS-SVVWETLEKY--AQTEPGLLLGEPS 155 (245)
Q Consensus 119 ~a~~~~~~m~-~~~~-~~~~~~li~~--~~~~g~~~~~~~~ 155 (245)
+|.+.|++.- ..|+ ...+..+-.+ +...|+.+.|...
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998763 3333 3344444333 6666777766544
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.80 E-value=0.29 Score=34.34 Aligned_cols=107 Identities=7% Similarity=-0.084 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC-CCcHhhHHHHHHHhcc----cCcHHHHHH
Q 043265 12 EREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGV-RPNWSTFVGVITACGC----FGAVDEGFQ 86 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~p~~~t~~~ll~~~~~----~g~~~~a~~ 86 (245)
.+++++|.++|.+..+.|- |+.. |=..|...+.++.+.+..+... .-+...+..|=..|.. .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4578999999999998883 4443 4444544445555544322211 1345666666666666 789999999
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHHHhc----cCCHHHHHHHHHhc
Q 043265 87 HFESVTRDYDINPTLEHFLGIVDLYGR----LQKIAEAREFIRNM 127 (245)
Q Consensus 87 ~~~~m~~~~~~~p~~~~~~~li~~y~~----~g~~~~a~~~~~~m 127 (245)
.|+...+ .| +...+..|-.+|.. .++.++|...|++-
T Consensus 83 ~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 83 YYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9998866 34 55667777788887 78999999998765
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.50 E-value=1.4 Score=31.18 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchH
Q 043265 33 DSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLE 102 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 102 (245)
+...|..+-.+|.+.|.++.|....... +.| +...|..+-.+|...|++++|...|+.... +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~---l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR---NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---cCCCCH
Confidence 3467888888888888888876643321 234 577888999999999999999999998755 456543
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.03 E-value=0.16 Score=37.09 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-------------hHHHHHHHHHHhccCCHHHHHHHHHhcC-C----
Q 043265 68 FVGVITACGCFGAVDEGFQHFESVTRDYDINPT-------------LEHFLGIVDLYGRLQKIAEAREFIRNMQ-I---- 129 (245)
Q Consensus 68 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~y~~~g~~~~a~~~~~~m~-~---- 129 (245)
+...=..+.+.|++++|.+.|+...+ +.|+ ...|+.+-.++.+.|++++|...|++-- +
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 33444456677888888888876644 2333 2277778888888888888877775442 3
Q ss_pred ---CCc-HHHH----HHHHHHHHhCCCCccccccc--cccccccc
Q 043265 130 ---DAS-SVVW----ETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 130 ---~~~-~~~~----~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
.|| ...| ...=.++...|+.+.|...+ ++++.|+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 565 3456 55557777778888777766 66666654
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.73 E-value=0.59 Score=34.04 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=66.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIF-LDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
..+.+.|++++|++.|++..+..-. |+. ..++. .+.+...|+.+-.++.+.|++++|.
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-------------~a~~~--------~~~~a~a~~n~g~al~~Lgr~~eAl 77 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPE-------------EAFDH--------AGFDAFCHAGLAEALAGLRSFDEAL 77 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTT-------------SCCCH--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcch-------------hhhhh--------ccchHHHHHHHHHHHHHCCCHHHHH
Confidence 3456678888888888887653221 221 00000 0012347888888888899999988
Q ss_pred HHHHHhhhh----cCCCcc-hHHH----HHHHHHHhccCCHHHHHHHHHhc
Q 043265 86 QHFESVTRD----YDINPT-LEHF----LGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 86 ~~~~~m~~~----~~~~p~-~~~~----~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..++...+- ..+.|+ ...| .-.=.++...|++++|...|++-
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 888877541 123675 4566 77788999999999999999865
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.67 E-value=0.24 Score=43.11 Aligned_cols=93 Identities=8% Similarity=-0.062 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHhhhhhhHHHHHHHHhc---------C-CCC
Q 043265 1 DLNSELKHLCREREVKAALEVMDKLKNI-----GI-FLD-SPDIIELLNVCMDLKLLEAGKRFEND---------G-VRP 63 (245)
Q Consensus 1 t~n~ll~~~~~~g~~~~A~~lf~~m~~~-----g~-~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~---------~-~~p 63 (245)
++|.|-..|...|++++|+.++.+.... |- .|+ ..+++.|-..|...|.+++|..+.+. | -+|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4688889999999999999999987532 32 344 47789999999999999998776221 2 234
Q ss_pred cH-hhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 64 NW-STFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 64 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
+. .+.+.+-.++...+..++|+.++..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3455566677778889999999988865
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.61 E-value=0.53 Score=40.13 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=60.6
Q ss_pred HHHhcccCcHHHHHHHHHHhhhh--cCCC---c-chHHHHHHHHHHhccCCHHHHHHHHHhcC---------CCCcH-HH
Q 043265 72 ITACGCFGAVDEGFQHFESVTRD--YDIN---P-TLEHFLGIVDLYGRLQKIAEAREFIRNMQ---------IDASS-VV 135 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~--~~~~---p-~~~~~~~li~~y~~~g~~~~a~~~~~~m~---------~~~~~-~~ 135 (245)
+..+.+.|++++|+.++++..+. .-+- | ...+++.|..+|...|++++|+.++++.- ..|++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888888766431 1222 3 35678889999999999999988887552 24553 56
Q ss_pred HHHHHHHHHhCCCCccccccc
Q 043265 136 WETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 136 ~~~li~~~~~~g~~~~~~~~~ 156 (245)
++.|=..|...|+++.|....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 777778888999988887666
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.57 E-value=0.57 Score=31.05 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 17 AALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 17 ~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
+|++.|.+..+.. ..+...|..+-..|...|.++.|....+.. ..| +...|..+-.+|...|+.++|...|+...+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677777776643 235778888888898999888887654332 233 467888899999999999999999987754
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.70 E-value=5.5 Score=33.73 Aligned_cols=134 Identities=10% Similarity=0.016 Sum_probs=87.0
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh----hhHHHHHHHHhcCCCCcHhhHHHHHHH-h-
Q 043265 5 ELKHLCRER---EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL----KLLEAGKRFENDGVRPNWSTFVGVITA-C- 75 (245)
Q Consensus 5 ll~~~~~~g---~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~~~~~~~~~~~p~~~t~~~ll~~-~- 75 (245)
|=..|.+.| +.++|+++|.+..+.|- ++...+..|-..|... ++.+.+.+..+...+-+...+..+-.. +
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344566678 88899999999888874 4555445555555443 466666554333333344555555444 3
Q ss_pred -cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccC-----CHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 043265 76 -GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ-----KIAEAREFIRNMQIDASSVVWETLEKYAQT 145 (245)
Q Consensus 76 -~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g-----~~~~a~~~~~~m~~~~~~~~~~~li~~~~~ 145 (245)
...++.++|.+.|+...+ .| +...+..|=.+|. .| +.++|...|++-- .-++..+..|=..|..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRR 330 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHC
Confidence 458899999999988765 45 5556666666676 55 8999999998887 5555555555455544
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.48 E-value=0.52 Score=40.26 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhc---CCC---CC-HHHHHHHHHHhhhhhhHHHHHHHHhc----------CCCCc-HhhHHHHHHH
Q 043265 13 REVKAALEVMDKLKNI---GIF---LD-SPDIIELLNVCMDLKLLEAGKRFEND----------GVRPN-WSTFVGVITA 74 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~---g~~---p~-~~t~~~ll~~~~~~~~~~~~~~~~~~----------~~~p~-~~t~~~ll~~ 74 (245)
|++++|+.++.+..+. -+. |+ ..+++.|..+|...|.+++|..+.+. .-.|+ ..+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666654321 111 22 24566666666666666666554111 12333 3446666666
Q ss_pred hcccCcHHHHHHHH
Q 043265 75 CGCFGAVDEGFQHF 88 (245)
Q Consensus 75 ~~~~g~~~~a~~~~ 88 (245)
|...|+.++|+.++
T Consensus 392 ~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 392 YMGLENKAAGEKAL 405 (433)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhccCHHHHHHHH
Confidence 66666666666555
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.37 E-value=5.4 Score=33.20 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhh-----------hhHHHHHHH-Hh-cCCCCcHhhHHHHHHHhcccC
Q 043265 14 EVKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDL-----------KLLEAGKRF-EN-DGVRPNWSTFVGVITACGCFG 79 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~-----------~~~~~~~~~-~~-~~~~p~~~t~~~ll~~~~~~g 79 (245)
...+|..+|++..+.. |+ ...|..+.-+|... ..+..+.+- .. ..-+.+..+|.++--.+...|
T Consensus 214 ~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 3578999999988753 54 34444444444211 111112111 11 233567888888777777789
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-CCCCcHHHHH
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-QIDASSVVWE 137 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~~~~~~~~~~ 137 (245)
++++|...++.... .+ |+...|..+=..+.-.|+.++|.+.|.+- .+.|...||.
T Consensus 292 d~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 292 KTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 99999999999877 34 88888878888899999999999999655 3577776643
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.13 E-value=2.1 Score=37.04 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-hHHHHHHHHhcCCC--Cc-HhhHHHHHHHhcccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK-LLEAGKRFENDGVR--PN-WSTFVGVITACGCFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~--p~-~~t~~~ll~~~~~~g~ 80 (245)
-+..+.+.+.++.|..+|.+....+ ++...|......-...+ +.+.++.+.+.+++ |+ ...+...+.-..+.|+
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 3444556778999999999993222 23444432222212223 47777776554432 33 3345556666778899
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.+.|..+|+...+ ....|...++.=.+.|+.+.+..++++.
T Consensus 370 ~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 370 EENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999997732 5778889998888899999999988755
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.97 E-value=1.5 Score=35.07 Aligned_cols=124 Identities=5% Similarity=-0.145 Sum_probs=82.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcC--CCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--hHHHHHHHHHHhc
Q 043265 38 IELLNVCMDLKLLEAGKRFENDG--VRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT--LEHFLGIVDLYGR 113 (245)
Q Consensus 38 ~~ll~~~~~~~~~~~~~~~~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~y~~ 113 (245)
-.+..++...|.+++|.++...- ..|+....-.+-..+.+.+++++|+..|+..... . .|. ...+..+=.++.+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 34556677779999998876543 2454444455555788999999999999855331 1 121 2356667788999
Q ss_pred cCCHHHHHHHHHhcCCC---Cc--HHHHHHHHHHHHhCCCCccccccc--ccccccc
Q 043265 114 LQKIAEAREFIRNMQID---AS--SVVWETLEKYAQTEPGLLLGEPSS--SLRLSNK 163 (245)
Q Consensus 114 ~g~~~~a~~~~~~m~~~---~~--~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~ 163 (245)
.|++++|++.|++.... |. ...+...-.++...|+.+.|...+ +....|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999987312 43 223333445667778888888776 5555544
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.45 E-value=0.94 Score=29.38 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=13.4
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
..|..+-.+|...|++++|.+.|++.
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555544
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.40 E-value=1.7 Score=31.56 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=67.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
.|-+.+++|.+.|+...+.+- -+...|+.+=.++...+.++.+..-. +.+++|...|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al---------------------~~~~eAi~~le 70 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAK---------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhH---------------------hHHHHHHHHHH
Confidence 344567777777777765432 24556665555665555444322211 13677888777
Q ss_pred HhhhhcCCCcc-hHHHHHHHHHHhccC-----------CHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Q 043265 90 SVTRDYDINPT-LEHFLGIVDLYGRLQ-----------KIAEAREFIRNMQ-IDASSVVWETLEKYAQT 145 (245)
Q Consensus 90 ~m~~~~~~~p~-~~~~~~li~~y~~~g-----------~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~ 145 (245)
+..+ +.|+ ...|..+=.+|.+.| ++++|...|++-- +.|+...|..-+..+.+
T Consensus 71 ~AL~---ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 71 EALL---IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHH---hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 6654 4554 456777777777654 7888888887664 57777666666655444
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.38 E-value=1.3 Score=28.17 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCc-chH-HHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 72 ITACGCFGAVDEGFQHFESVTRDYDINP-TLE-HFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 72 l~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-..+.+.|++++|.+.|+...+. .| +.. .|..+-.+|.+.|++++|...|++.-
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566788999999999887652 34 345 77788888889999999999887763
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.75 E-value=0.64 Score=29.71 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhhhHHHH
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLDSP-DIIELLNVCMDLKLLEAG 53 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~ 53 (245)
..+.+.|++++|.+.|++..+..- .+.. .|..+-.+|...|.++.|
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHH
Confidence 456677788888888877765421 1223 344444444444444433
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.62 E-value=3.7 Score=33.94 Aligned_cols=115 Identities=10% Similarity=-0.075 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHH----hcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHh--------cCCCC-cHhhHHHHHHHhccc
Q 043265 13 REVKAALEVMDKLK----NIGIFLD-SPDIIELLNVCMDLKLLEAGKRFEN--------DGVRP-NWSTFVGVITACGCF 78 (245)
Q Consensus 13 g~~~~A~~lf~~m~----~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~--------~~~~p-~~~t~~~ll~~~~~~ 78 (245)
|.+++|.+++.... ..+..+. ..++..+...|...|.++.|..+.. ..-+| ...+|..+...|...
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 55666666665543 2233333 4566777788888888888866422 11222 246789999999999
Q ss_pred CcHHHHHHHHHHhhhh---cCCCcc--hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 79 GAVDEGFQHFESVTRD---YDINPT--LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~---~~~~p~--~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
|++++|..+++....- .+..|. ...+..+...+...|++++|...|...
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999876431 111122 356778888889999999998877544
No 204
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.58 E-value=3.5 Score=37.32 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
.++..+.+.|.+++|.++.++-.. - .......|+++.|.++.+.. .+...|..+-..|.+.|+++.
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~ 699 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKL 699 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHH
Confidence 455667777777777665532111 1 22233456677776664332 456677777777777777777
Q ss_pred HHHHHHHh
Q 043265 84 GFQHFESV 91 (245)
Q Consensus 84 a~~~~~~m 91 (245)
|++.|..+
T Consensus 700 A~~~y~~~ 707 (814)
T 3mkq_A 700 AIEAFTNA 707 (814)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77777655
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.19 E-value=3.1 Score=25.51 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcC--C-CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDG--V-RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLY 111 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~--~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y 111 (245)
.|..+-..+.+.|.++.|....+.. . +.+...+..+-.++.+.|++++|.+.|++..+. .| +...+..+-.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 4444444455555555544432211 1 224556667777788888888888888877552 23 345555565555
Q ss_pred hcc
Q 043265 112 GRL 114 (245)
Q Consensus 112 ~~~ 114 (245)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 206
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.11 E-value=1.4 Score=29.37 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=33.8
Q ss_pred HhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 57 ENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 57 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
...-+.|++....+.|+||.|.+++..|.++|+.++.+ +.+...+|..+++
T Consensus 37 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 37 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44556777777777777777777777777777777543 4344445665554
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.95 E-value=3 Score=37.80 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=65.8
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHH
Q 043265 9 LCREREVKAALE-VMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQH 87 (245)
Q Consensus 9 ~~~~g~~~~A~~-lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 87 (245)
....+++++|.+ ++..++ +......++..+.+.|.++.|.++.+. | ..- .......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---~-~~~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---Q-DQK----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---H-HHH----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---c-chh----eehhhhcCCHHHHHHH
Confidence 345788888876 553222 112236667777777888888766432 1 111 2334567899988887
Q ss_pred HHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 88 FESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 88 ~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
.+.+ .+...|..|-..+.+.|+++.|++.|.+++
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 6544 255688888888888888888888888775
No 208
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.12 E-value=2.2 Score=28.42 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHH---hcCCCCcHhhHHHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFE---NDGVRPNWSTFVGVIT 73 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~---~~~~~p~~~t~~~ll~ 73 (245)
+.-+..+-++.+...++.|++....+-|+||-+.+++..|.++. +.++.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 55678888888999999999999999999999999999987763 3345555667887774
No 209
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.07 E-value=4.4 Score=37.09 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=45.1
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-|...|+++-|+++-++... +.|+ -.+|-.|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35568999999999987654 6776 6889999999999999999999999997
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.99 E-value=2.3 Score=27.51 Aligned_cols=74 Identities=11% Similarity=-0.082 Sum_probs=50.1
Q ss_pred CcHhhHHHHHHHhcccCc---HHHHHHHHHHhhhhcCCCcc-hHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHH
Q 043265 63 PNWSTFVGVITACGCFGA---VDEGFQHFESVTRDYDINPT-LEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWE 137 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~ 137 (245)
.|...+..+-.++...++ .++|..++++..+ ..|+ +.....+=..+.+.|++++|...|+++. ..|+ ..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 455566666666644333 6889999987755 3454 5566677788899999999999999884 4455 4444
Q ss_pred HHH
Q 043265 138 TLE 140 (245)
Q Consensus 138 ~li 140 (245)
.+|
T Consensus 80 ~~i 82 (93)
T 3bee_A 80 VTI 82 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.67 E-value=3.7 Score=26.83 Aligned_cols=70 Identities=6% Similarity=-0.083 Sum_probs=49.1
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhc-----CCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDY-----DINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS 133 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~ 133 (245)
+..-+-.|=..+.+.|+++.|..-|+...+.. +-.+....+..|-.+|.+.|+++.|...+++.. ..|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34445566667778888888888887665421 112345678888899999999999999888774 45553
No 212
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.82 E-value=3.2 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=28.2
Q ss_pred cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHH
Q 043265 59 DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIV 108 (245)
Q Consensus 59 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 108 (245)
..+.|++....+.|++|.|.+++..|.++|+.++.+ +.+....|..++
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~l 129 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 129 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHH
Confidence 345566666666666666666666666666666443 334444455544
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.36 E-value=3.6 Score=33.13 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=63.2
Q ss_pred hHHHHHHHHhc--CCCCc---HhhHHHHHHHhcc-----cCcHHHHHHHHHHhhhhcCCCc--chHHHHHHHHHHhcc-C
Q 043265 49 LLEAGKRFEND--GVRPN---WSTFVGVITACGC-----FGAVDEGFQHFESVTRDYDINP--TLEHFLGIVDLYGRL-Q 115 (245)
Q Consensus 49 ~~~~~~~~~~~--~~~p~---~~t~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~y~~~-g 115 (245)
.+..++.+.++ .+.|+ ...|.++-..|.+ .|+.++|++.|++..+ +.| ++.++...-+.|++. |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 34445555444 34555 5578888888988 5999999999998865 566 367778889999995 9
Q ss_pred CHHHHHHHHHhcC-CC----CcHHHHHHHH
Q 043265 116 KIAEAREFIRNMQ-ID----ASSVVWETLE 140 (245)
Q Consensus 116 ~~~~a~~~~~~m~-~~----~~~~~~~~li 140 (245)
+.+++.+.+++-- .. |+....|.+-
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999998763 22 5555555443
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.14 E-value=13 Score=27.38 Aligned_cols=103 Identities=13% Similarity=-0.021 Sum_probs=73.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQH 87 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 87 (245)
-..+.|+++.|.++-.++ -+...|..|-...-+.|+++.|++.... ..-|..+.--|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~-----~~D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT-----QHSFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH-----TTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH-----hCCHHHHHHHHHHhCCHHHHHHH
Confidence 356789999999998776 2568999999999999999999887544 22344555556667777665554
Q ss_pred HHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 88 FESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 88 ~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
-+.-.. .| -++.....+.-.|+++++.++|.+..
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 432222 12 34666666777789999999998887
No 215
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=81.71 E-value=23 Score=29.87 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhh---hHHHHHHHHhc---CCCCcHhhHHHHHHHhccc----CcHHHHHHHHHHhhhhcCCCcchHHHH
Q 043265 36 DIIELLNVCMDLK---LLEAGKRFEND---GVRPNWSTFVGVITACGCF----GAVDEGFQHFESVTRDYDINPTLEHFL 105 (245)
Q Consensus 36 t~~~ll~~~~~~~---~~~~~~~~~~~---~~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~~~~ 105 (245)
.+..|-..|...| +.+.+.+..+. .-.++...+..+-..|... ++.++|.+.|+... .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CC---CHHHHH
Confidence 5666666666666 55555443221 1234444444555555544 68888888888765 12 444555
Q ss_pred HHHHH-H--hccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 043265 106 GIVDL-Y--GRLQKIAEAREFIRNMQIDASSVVWETLEKYAQ 144 (245)
Q Consensus 106 ~li~~-y--~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~ 144 (245)
.|-.+ | ...|+.++|...|++---.-+...+..|=..|.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555 3 458888999888876641234444544444554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=80.06 E-value=3.7 Score=34.18 Aligned_cols=135 Identities=9% Similarity=-0.091 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHhhhh-----hhHHHHHHHHhcC--CCCc-HhhHHHHHHHhcc--------cCcHHHHHHHHHHhhh
Q 043265 30 IFLDSPDIIELLNVCMDL-----KLLEAGKRFENDG--VRPN-WSTFVGVITACGC--------FGAVDEGFQHFESVTR 93 (245)
Q Consensus 30 ~~p~~~t~~~ll~~~~~~-----~~~~~~~~~~~~~--~~p~-~~t~~~ll~~~~~--------~g~~~~a~~~~~~m~~ 93 (245)
...+...|...+++.... .....+..+.++- ..|+ ...|..+--+|.- ....+...+.+.....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445678899999886543 3445555554443 3454 2344433333321 0111111122221111
Q ss_pred hcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCCCccccccc--cccccccc
Q 043265 94 DYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASSVVWETLEKYAQTEPGLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 94 ~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~ 164 (245)
-..-..+..+|.++-..+...|++++|...+++.. ..|+...|..+=..+...|+.+.|.... ++++.|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 01123467788888777777899999999998875 5677766644447778899999888777 77776654
No 217
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=79.85 E-value=22 Score=28.53 Aligned_cols=140 Identities=10% Similarity=0.009 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH--H----HHHHHhcCCCCcHhhHHHHHHHhcccCc------
Q 043265 13 REVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLE--A----GKRFENDGVRPNWSTFVGVITACGCFGA------ 80 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~----~~~~~~~~~~p~~~t~~~ll~~~~~~g~------ 80 (245)
+++++++++++.+.+..- -+...|+---....+.|.++ . ..++.+.. +-|-..|+.--....+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 567777777777776542 25556655444444443333 2 22233221 2244455444444444444
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHH-HHHHHHHhcC-C----CCcHHHHHHHHHHHHhCCCCccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIA-EAREFIRNMQ-I----DASSVVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~-~a~~~~~~m~-~----~~~~~~~~~li~~~~~~g~~~~~~~ 154 (245)
++++.+.++..... . .-|...|+-+-..+.+.|+.. ++..+..+.- . ..++..+..+...+...|+.+.|..
T Consensus 202 ~~eEl~~~~~aI~~-~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK-C-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH-C-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh-C-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666666655441 1 114556666666666666533 3444544432 1 1244556666666666666666555
Q ss_pred cc
Q 043265 155 SS 156 (245)
Q Consensus 155 ~~ 156 (245)
+.
T Consensus 280 ~~ 281 (306)
T 3dra_A 280 VY 281 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 218
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.79 E-value=6 Score=27.90 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHH---hcCCCCcHhhHHHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFE---NDGVRPNWSTFVGVIT 73 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~---~~~~~p~~~t~~~ll~ 73 (245)
+.-+..+-++.+...++.|++.....-|++|-+.+++..|.++. +.++.+...+|..+|.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 44566777777888899999999999999999999999887763 3455566777887774
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.36 E-value=17 Score=25.88 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 69 VGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 69 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
...|+.....|.-|+-.++...+.. +.+|+....-.+-.+|.+-|+..+|.++..+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4445555566666666666665422 2344444445566666666666666666543
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=76.79 E-value=13 Score=26.58 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=47.5
Q ss_pred CcHhhHHHHHHHhcccC---cHHHHHHHHHHhhhhcCCCc---chHHHHHHHHHHhccCCHHHHHHHHHhcC-CCCcH
Q 043265 63 PNWSTFVGVITACGCFG---AVDEGFQHFESVTRDYDINP---TLEHFLGIVDLYGRLQKIAEAREFIRNMQ-IDASS 133 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~y~~~g~~~~a~~~~~~m~-~~~~~ 133 (245)
++..+--.+--++++.. +++++..+|++..+. . .| .-..| .|--+|.+.|++++|++.|+..- ++|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY-~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVF-YLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHH-HHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHH-HHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 56666666666777777 677899999988764 2 24 12234 45567799999999999998874 57764
No 221
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.04 E-value=3.1 Score=31.30 Aligned_cols=146 Identities=8% Similarity=-0.032 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhccc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDS---PDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCF 78 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~ 78 (245)
+.|...++.|+.+.+..+++.+.+.|..++. ..++.|. ..+..|..+.++.+.+.|..|+.... .+.+...+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 4567778889999998898887777765442 2334444 34466888989989888887764332 2344445577
Q ss_pred CcHHHHHHHHHHhhhhcCCCc---chHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCc-HHHHHHHHHHHHhCCCCccc
Q 043265 79 GAVDEGFQHFESVTRDYDINP---TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDAS-SVVWETLEKYAQTEPGLLLG 152 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~~ 152 (245)
|+.+-+..+++.-.. .++.+ +..-.+ .+..-++.|+.+-...+++.-. ...+ ..-++.|..|+ ..|+.+..
T Consensus 90 ~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~v 166 (241)
T 1k1a_A 90 RSPTCLRALLDSAAP-GTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMV 166 (241)
T ss_dssp TCHHHHHHHHHHSCT-TSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-HTTCHHHH
T ss_pred CCHHHHHHHHHcCCC-ccccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH-HcCCHHHH
Confidence 888887777765432 11222 222222 3334446678777777776532 1122 22334444444 44555543
Q ss_pred c
Q 043265 153 E 153 (245)
Q Consensus 153 ~ 153 (245)
+
T Consensus 167 ~ 167 (241)
T 1k1a_A 167 Q 167 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.06 E-value=12 Score=31.12 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 70 GVITACGCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 70 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
.++.++...|+.+++...+...... .| +...|-.+|.+|.+.|+..+|.+.|+..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666788888888777766542 23 5567888888888888888888877654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=71.38 E-value=21 Score=25.48 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh---hHHHHHHH----HhcCCCC--cHhhHHHHHHHhcccCcHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK---LLEAGKRF----ENDGVRP--NWSTFVGVITACGCFGAVDEG 84 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~~~~~----~~~~~~p--~~~t~~~ll~~~~~~g~~~~a 84 (245)
.+..+.+-|.+....|- ++..+.-.+-.++++.+ .++++..+ .+.. .| +...+=.+--+|.+.|+.++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777887777665 67666666666676654 55555544 3333 24 223333444567999999999
Q ss_pred HHHHHHhhhhcCCCcch
Q 043265 85 FQHFESVTRDYDINPTL 101 (245)
Q Consensus 85 ~~~~~~m~~~~~~~p~~ 101 (245)
.+.++...+ ++|+-
T Consensus 91 ~~y~~~lL~---ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ---TEPQN 104 (152)
T ss_dssp HHHHHHHHH---HCTTC
T ss_pred HHHHHHHHh---cCCCC
Confidence 999998865 67753
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=68.34 E-value=19 Score=23.24 Aligned_cols=65 Identities=11% Similarity=-0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDE 83 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 83 (245)
.|=..+.+.|+++.|..+|....+.--.++. .-.+....+..+-.++.+.|+++.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------------~~~~~~~i~~~L~~~~~~~g~~~~ 64 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------------STIDKVSVLDYLSYAVYQQGDLDK 64 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------------CSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------------CcccHHHHHHHHHHHHHHccCHHH
Confidence 3445677888999999998887553100000 012334555666667777777777
Q ss_pred HHHHHHHhhh
Q 043265 84 GFQHFESVTR 93 (245)
Q Consensus 84 a~~~~~~m~~ 93 (245)
|..++++..+
T Consensus 65 A~~~~~~al~ 74 (104)
T 2v5f_A 65 ALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766643
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=67.21 E-value=0.037 Score=47.95 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHhhhhhhHHHH---HHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 043265 33 DSPDIIELLNVCMDLKLLEAG---KRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVD 109 (245)
Q Consensus 33 ~~~t~~~ll~~~~~~~~~~~~---~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 109 (245)
|+..|..++.+..+.|.+++. .+|.+.. .-++..=+.|+-+|++.+++.+-++ .=-.|+..-....=+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEe--------fl~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEE--------FINGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTS--------TTSCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHH--------HHcCCCcccHHHHHH
Confidence 345566777777766655544 3343332 3344445677777777777644222 222345544455666
Q ss_pred HHhccCCHHHHHHHHHhcC-----------------------CCCcHHHHHHHHHHHHhCCCCccccccc
Q 043265 110 LYGRLQKIAEAREFIRNMQ-----------------------IDASSVVWETLEKYAQTEPGLLLGEPSS 156 (245)
Q Consensus 110 ~y~~~g~~~~a~~~~~~m~-----------------------~~~~~~~~~~li~~~~~~g~~~~~~~~~ 156 (245)
-+...|..+.|.-+|..+. ...++.||--+-.+|...+.+..|....
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicG 222 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG 222 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHH
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhc
Confidence 6666677777766665542 1236789999999999999998887655
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=63.20 E-value=38 Score=24.11 Aligned_cols=127 Identities=6% Similarity=-0.052 Sum_probs=76.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHH-HHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHH
Q 043265 10 CREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEA-GKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHF 88 (245)
Q Consensus 10 ~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 88 (245)
.-.|.+++..++..+..+.. +..-||-+|..-...-+-+- ++-+-.-|--.| ...+|++......+
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC----------GGGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC----------cHhhhcHHHHHHHH
Confidence 34578888888888876432 22333333333222211111 111222232222 23466666666666
Q ss_pred HHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc-C-CCCcHHHHHHHHHHHHhCCCCcccccc
Q 043265 89 ESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM-Q-IDASSVVWETLEKYAQTEPGLLLGEPS 155 (245)
Q Consensus 89 ~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m-~-~~~~~~~~~~li~~~~~~g~~~~~~~~ 155 (245)
..+-. +.......++.+...|.-|.-.++..++ . .+|++...-.+-.||.+-|+...+..+
T Consensus 85 ~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 85 VINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp HHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 54422 5667788899999999999999999884 3 467777777777999999887775443
No 227
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=60.96 E-value=1.6 Score=33.64 Aligned_cols=135 Identities=8% Similarity=-0.052 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhhh--hhhHHHHHHHHhcCCCCc----------
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFL-------DSPDIIELLNVCMD--LKLLEAGKRFENDGVRPN---------- 64 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-------~~~t~~~ll~~~~~--~~~~~~~~~~~~~~~~p~---------- 64 (245)
+.|...++.|+.+....+++.+.+.|..+ |...++.|..|+.. .|..+.++.+.+.|..++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 45667788899998888888887777644 33556666666543 377777777766654443
Q ss_pred ----HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHH---------------HHHHHHHHhccCCHHHHHHHHH
Q 043265 65 ----WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEH---------------FLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 65 ----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---------------~~~li~~y~~~g~~~~a~~~~~ 125 (245)
..-++.|.. .+..|+.+-+..+++ .|..++... -.+.+..-++.|+.+-+..+++
T Consensus 84 ~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~-----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 84 TDEFYQGHSALHI-AIEKRSLQCVKLLVE-----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CSTTTTTCCHHHH-HHHTTCHHHHHHHHH-----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCHHHH-HHHcCCHHHHHHHHH-----cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 223344443 445677776666654 244333221 1233444456788877777777
Q ss_pred h--cCC---CCcHHHHHHHHHHHH
Q 043265 126 N--MQI---DASSVVWETLEKYAQ 144 (245)
Q Consensus 126 ~--m~~---~~~~~~~~~li~~~~ 144 (245)
. -.. ..|..-++.|.-|+.
T Consensus 158 ~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 158 NPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred ccccCCCcCccCCCCCCHHHHHHH
Confidence 3 221 234444555655554
No 228
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.88 E-value=4.9 Score=31.57 Aligned_cols=138 Identities=7% Similarity=-0.031 Sum_probs=71.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhcccCc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFLDSP-DIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCFGA 80 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~g~ 80 (245)
.|...++.|+.+-+..+++ .|..++.. .++.| ...+..|..+.++.+.+.|..|+... ++.|. ..+..|+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~ 107 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPL-HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGN 107 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHH-HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCC
Confidence 4555666777766654444 34333221 23333 33345577888888888777665432 23333 3445677
Q ss_pred HHHHHHHHHHhhhhcCCCcch---HHHHHHHHHHhccCCHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhCCCCccccc
Q 043265 81 VDEGFQHFESVTRDYDINPTL---EHFLGIVDLYGRLQKIAEAREFIRNMQIDASS-VVWETLEKYAQTEPGLLLGEP 154 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~-~~~~~li~~~~~~g~~~~~~~ 154 (245)
.+-+..+++. |..++. .-+.+.+..-+..|+.+-+..+++.-....+. .-++.|..|+ ..|+.+..+.
T Consensus 108 ~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~-~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI-KNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHH-HcChHHHHHH
Confidence 7666655542 333332 22234445556677777777666654422222 3344444444 4455554433
No 229
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=58.43 E-value=2.7 Score=30.43 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=57.4
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCC----------HHHHHHHHHhcC-CCCc-HHHHHHHHHH
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQK----------IAEAREFIRNMQ-IDAS-SVVWETLEKY 142 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~----------~~~a~~~~~~m~-~~~~-~~~~~~li~~ 142 (245)
.+.+.+++|.+.++...+ ..| +...|..+=.++.+.|+ +++|...|++-- +.|+ ...|..+=.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 355678888888887755 334 45566666666666655 468988887663 4554 5677777777
Q ss_pred HHhCC-----------CCccccccc--cccccccc
Q 043265 143 AQTEP-----------GLLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 143 ~~~~g-----------~~~~~~~~~--~~~~~~~~ 164 (245)
|...| +++.|...+ ++++.|+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 77654 677776666 66666653
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.06 E-value=40 Score=27.91 Aligned_cols=72 Identities=11% Similarity=-0.094 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHh---cCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHhhh----hcCCCcchHHHHHH
Q 043265 36 DIIELLNVCMDLKLLEAGKRFEN---DGVRPNWSTFVGVITACGCFGAVDEGFQHFESVTR----DYDINPTLEHFLGI 107 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~l 107 (245)
....++.++-+.|..+.+..... .--+-+...|..+|.++.+.|+..+|.+.|+.... +.|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556666666676666643322 12344788999999999999999999999987643 47999998765443
No 231
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=57.55 E-value=11 Score=27.90 Aligned_cols=140 Identities=10% Similarity=-0.055 Sum_probs=80.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh---hHHHHHHHhcccC
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS---TFVGVITACGCFG 79 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~---t~~~ll~~~~~~g 79 (245)
++.|...++.|+++....++..-...--.+|...++.|..+ +..|..+.++.+.+.|..++.. .++.+ ...+..|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-HIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHHHHHHHHHhCCCCCCcCCCCCCHH-HHHHHcC
Confidence 45678888999999998888764332222344445555444 4667888888888888776543 23344 3445667
Q ss_pred cHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCcc
Q 043265 80 AVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~ 151 (245)
+.+-+..+++ .|..++ ..-. +.+..-++.|+.+-+..+++.-. -..|..-++.|..|+. .|+.+.
T Consensus 85 ~~~~v~~Ll~-----~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~ 154 (231)
T 3aji_A 85 XDEIVKALLV-----KGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA-KGNLKM 154 (231)
T ss_dssp CHHHHHHHHH-----TTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHH
T ss_pred HHHHHHHHHH-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH-cCCHHH
Confidence 7766665554 233332 2222 33444456788887777776432 1223333444444443 345444
No 232
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=56.02 E-value=9.8 Score=26.64 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHhcCCCCc
Q 043265 46 DLKLLEAGKRFENDGVRPN 64 (245)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~ 64 (245)
..|..+.++.+.+.|..++
T Consensus 51 ~~~~~~~v~~Ll~~g~~~~ 69 (165)
T 3twr_A 51 GYNRVSVVEYLLQHGADVH 69 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTT
T ss_pred HcChHHHHHHHHhcCCCCC
Confidence 3344555555555554443
No 233
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=55.35 E-value=43 Score=22.26 Aligned_cols=57 Identities=12% Similarity=-0.116 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHH
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLE 140 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li 140 (245)
..++|.-+-+.+... +. ...+--+=+..+.+.|++++|..+.+... -||...|-+|-
T Consensus 22 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALc 78 (116)
T 2p58_C 22 YHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALC 78 (116)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHH
Confidence 456666666666542 22 11111222345566788888888888777 78888777664
No 234
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.62 E-value=16 Score=27.78 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=67.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhc
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLD----SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACG 76 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~ 76 (245)
++.+...++.|+++....+++ .|..++ ...++. |...+..|..+.++.+.+.|..|+.... .+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 456777888999877655554 444332 222334 4444566888999999888887764321 23344445
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 77 CFGAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
..|+.+-+..+++ .|..++ ..-++ .+..-++.|+.+-...+++.-
T Consensus 81 ~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 81 IAGSVKLLKLFLS-----KGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHTCHHHHHHHHH-----TTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHH-----cCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhC
Confidence 6777766665554 344333 22222 344456678888777777654
No 235
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.16 E-value=28 Score=25.62 Aligned_cols=134 Identities=12% Similarity=0.027 Sum_probs=74.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhcccC
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCFG 79 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~g 79 (245)
|...++.|+++....+++ .|..++ .... +.+...++.|..+.++.+.+.|..++... -.+.+...+..|
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 445677888776655544 454332 2222 34445566788999998888887665332 123445555677
Q ss_pred cHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCc
Q 043265 80 AVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~ 150 (245)
+.+-+..+++ .|..|+ ...+ +.+..-++.|+.+-+..+++.-. ...|..-++.+..++...+..+
T Consensus 88 ~~~~v~~Ll~-----~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 88 HLSMVVQLMK-----YGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp CHHHHHHHHH-----TTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred CHHHHHHHHH-----cCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 8776665554 344433 2222 33444556788887777776432 1234444556666665544333
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.71 E-value=43 Score=21.19 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHhhhhhh---HHHHHHHHhcC--CCC-cHhhHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043265 32 LDSPDIIELLNVCMDLKL---LEAGKRFENDG--VRP-NWSTFVGVITACGCFGAVDEGFQHFESVTR 93 (245)
Q Consensus 32 p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 93 (245)
+|+..+..+-.++...+. .+.+..+.+.. ..| +......+=..+.+.|++++|...|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355566666666543332 45565554443 334 345555566778889999999999999865
No 237
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=48.42 E-value=64 Score=26.56 Aligned_cols=99 Identities=7% Similarity=-0.155 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHhcCC------CCcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCC-----CcchHHHHHHHHHHhc
Q 043265 45 MDLKLLEAGKRFENDGV------RPNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDI-----NPTLEHFLGIVDLYGR 113 (245)
Q Consensus 45 ~~~~~~~~~~~~~~~~~------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~~~~~li~~y~~ 113 (245)
++.|..+.++.+.+.|. .+|....+.|..| ++.|..+-++.+++ .|- .++...++.| ..-++
T Consensus 100 a~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A-a~~G~~eiv~~Ll~-----~gad~~~~~i~~~~~TpL-h~Aa~ 172 (376)
T 2aja_A 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA-AENGHLHVLNRLCE-----LAPTEIMAMIQAENYHAF-RLAAE 172 (376)
T ss_dssp HHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH-HHTTCHHHHHHHHH-----SCTTTHHHHHSHHHHHHH-HHHHH
T ss_pred HHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH-HHcCCHHHHHHHHh-----CCCCccccccCCCCCCHH-HHHHH
Confidence 45566666666666654 3444444444433 34566655555443 221 1112223333 33345
Q ss_pred cCCHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhCCCCcc
Q 043265 114 LQKIAEAREFIRNMQID-----ASSVVWETLEKYAQTEPGLLL 151 (245)
Q Consensus 114 ~g~~~~a~~~~~~m~~~-----~~~~~~~~li~~~~~~g~~~~ 151 (245)
.|+.+-+.-+++.-. . .|..-++.|..|+...|+.+.
T Consensus 173 ~G~~eiv~~Ll~~ga-~~~~~~~d~~g~TpL~~Aa~~~G~~ei 214 (376)
T 2aja_A 173 NGHLHVLNRLCELAP-TEATAMIQAENYYAFRWAAVGRGHHNV 214 (376)
T ss_dssp TTCHHHHHHHHHSCG-GGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred CCCHHHHHHHHHcCC-ccchhccCCCCCCHHHHHHHHCCCHHH
Confidence 566665555554422 2 233335555555523444443
No 238
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=47.06 E-value=80 Score=22.92 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh---hhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVCMD---LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
.+.+..+++.+.+.|+--|..--...+....+ .|......++...||.++.. ...+..+......+.|..+.+.-
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I--~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIA--EDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHH--HHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHH--HHHHHhCCchhHHHHHHHHHHHH
Confidence 44566777777777776555444555555543 35556667778888865433 23333322223345566666543
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCC-HHHHHHHHHhcCCCCc
Q 043265 92 TRDYDINPTLEHFLGIVDLYGRLQK-IAEAREFIRNMQIDAS 132 (245)
Q Consensus 92 ~~~~~~~p~~~~~~~li~~y~~~g~-~~~a~~~~~~m~~~~~ 132 (245)
.....-.++.....-++..+.+.|. .+.+..+++.+...||
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 2222222333445567777778785 5667777777654444
No 239
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=46.73 E-value=16 Score=26.92 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh------hHHHHHHHhcc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS------TFVGVITACGC 77 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~------t~~~ll~~~~~ 77 (245)
+-|...++.|+.+.+..+++.-......+|...++.|..++ ..|..+.++.+.+.|..++.. -++.+ ...+.
T Consensus 4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L-~~A~~ 81 (228)
T 2dzn_A 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDYPDDSGWTPF-HIACS 81 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH-HHHHH
T ss_pred cHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHH-HcCCHHHHHHHHhccccccccccCCCCCCCHH-HHHHH
Confidence 45666778899888887777644332234444455555544 568888888888888443332 23444 34455
Q ss_pred cCcHHHHHHHHHHhhhhcC--CCc---chHHHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCCCc
Q 043265 78 FGAVDEGFQHFESVTRDYD--INP---TLEHFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPGLL 150 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~--~~p---~~~~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~ 150 (245)
.|+.+-+..+++ .| ..+ +..-.+ .+..-++.|+.+-+..+++.=. -.+|..-++.|..|+ ..|+.+
T Consensus 82 ~~~~~~~~~Ll~-----~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~ 154 (228)
T 2dzn_A 82 VGNLEVVKSLYD-----RPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSLK 154 (228)
T ss_dssp HCCHHHHHHHHS-----SSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHH
T ss_pred cCCHHHHHHHHh-----CCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH-HcCCHH
Confidence 677776665554 23 211 222222 3334456788887777776422 123333344454444 445554
Q ss_pred c
Q 043265 151 L 151 (245)
Q Consensus 151 ~ 151 (245)
.
T Consensus 155 ~ 155 (228)
T 2dzn_A 155 L 155 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 240
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.64 E-value=4.3 Score=31.09 Aligned_cols=135 Identities=7% Similarity=-0.165 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHhh--hhhhHHHHHHHHhcCCCCcH---------
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSP-------DIIELLNVCM--DLKLLEAGKRFENDGVRPNW--------- 65 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~~~~~~~~~~~p~~--------- 65 (245)
+.|...++.|+.+....+++.+.+.|..++.. -++.|..|.. +.|..+.++.+.+.|..|+.
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 34566778899998888888887777765533 4466666552 56777777776665432211
Q ss_pred -----hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHH----------------HHHHHHHHhccCCHHHHHHHH
Q 043265 66 -----STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEH----------------FLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 66 -----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----------------~~~li~~y~~~g~~~~a~~~~ 124 (245)
.-++.|. ..+..|+.+-+..+++ .|..++... -.+.+..-+..|+.+-+..++
T Consensus 87 ~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~-----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 87 RDVYYRGQTALH-IAIERRCKHYVELLVE-----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CCSSEESBCHHH-HHHHTTCHHHHHHHHH-----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccCCCCHHH-HHHHcCCHHHHHHHHh-----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2223333 3445677776665554 344443321 123344445677777777777
Q ss_pred Hh--cCC---CCcHHHHHHHHHHHH
Q 043265 125 RN--MQI---DASSVVWETLEKYAQ 144 (245)
Q Consensus 125 ~~--m~~---~~~~~~~~~li~~~~ 144 (245)
+. ... ..|..-++.|..|+.
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHH
Confidence 63 221 234444555555553
No 241
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=45.10 E-value=21 Score=24.52 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=66.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh---hHHHHHHHhccc
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGI-FLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS---TFVGVITACGCF 78 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~---t~~~ll~~~~~~ 78 (245)
.+.+...++.|+.+.+..+++. ....+ ..|...++.+.. +..|..+.++.+.+.|..++.. -.+.+.. .+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~ 78 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFGSTAIALELLKQGASPNVQDTSGTSPVHD-AART 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHT
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHc
Confidence 3456667788889988888877 31122 233344455544 6678888888888888776543 2334443 3455
Q ss_pred CcHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 79 GAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
|+.+-+..+++ .|..++ ..-.+. +..-++.|+.+-+..+++.
T Consensus 79 ~~~~~v~~Ll~-----~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 79 GFLDTLKVLVE-----HGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TCHHHHHHHHH-----TTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT
T ss_pred CcHHHHHHHHH-----cCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc
Confidence 77766555553 233332 222223 3344556777777777665
No 242
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=44.44 E-value=70 Score=21.55 Aligned_cols=71 Identities=8% Similarity=-0.046 Sum_probs=51.8
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhc----cCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 043265 71 VITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGR----LQKIAEAREFIRNMQIDASSVVWETLEKYAQT 145 (245)
Q Consensus 71 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~----~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~ 145 (245)
|=..|...+.+++|.+.|+...+ .| +...+..|=.+|.+ .++.++|...|++---.-++..+..|=..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 55667777889999999998866 33 56677777778877 78999999999876423455555555566655
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.79 E-value=83 Score=30.23 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=71.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC-----------------------HHHHHHHHHHhhhhhhHHHHHHHHh-----
Q 043265 7 KHLCREREVKAALEVMDKLKNIGIFLD-----------------------SPDIIELLNVCMDLKLLEAGKRFEN----- 58 (245)
Q Consensus 7 ~~~~~~g~~~~A~~lf~~m~~~g~~p~-----------------------~~t~~~ll~~~~~~~~~~~~~~~~~----- 58 (245)
..|...|++++|.+.|.+.. .|+.++ ..=|.-++..+-+.+..+.+.++.+
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778999999999998752 122111 1125556666666676666655422
Q ss_pred cCCC-CcH--hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHH
Q 043265 59 DGVR-PNW--STFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 59 ~~~~-p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~ 121 (245)
.+-. ++. ..|..+.+++...|++++|...+-.++. ...+- .....||...+..|.++.-.
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~--~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKK--SCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCH--HHHHHHHHHHHHHCCHHHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHH--HHHHHHHHHHHhCCChhhhh
Confidence 1111 222 2588899999999999999999987754 33332 35567788788777665543
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=40.46 E-value=5.6 Score=34.74 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=63.9
Q ss_pred cHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 043265 64 NWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQIDASSVVWETLEKYA 143 (245)
Q Consensus 64 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~ 143 (245)
|+..|.-+|.++.+.|.+++-.+.+. |.++..-+|.+. +.|+-+|+|.+++.+-++++. .||+.--..+=.-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~-MaRk~~ke~~ID--teLi~ayAk~~rL~elEefl~----~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQ-MARKKARESYVE--TELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHH-TTSTTCCSTTTT--HHHHHHHHTSCSSSTTTSTTS----CCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHhcccccH--HHHHHHHHhhCcHHHHHHHHc----CCCcccHHHHHHHH
Confidence 77889999999999999999999996 544344445544 789999999999877665543 34544444455777
Q ss_pred HhCCCCccccccc
Q 043265 144 QTEPGLLLGEPSS 156 (245)
Q Consensus 144 ~~~g~~~~~~~~~ 156 (245)
-..|..+.|+.++
T Consensus 155 f~e~lYeAAKily 167 (624)
T 3lvg_A 155 YDEKMYDAAKLLY 167 (624)
T ss_dssp HHSCCSTTSSTTG
T ss_pred HHccCHHHHHHHH
Confidence 7788888877655
No 245
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=40.23 E-value=14 Score=25.62 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=39.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHh---hHHHHHHHh
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFL---DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWS---TFVGVITAC 75 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~---t~~~ll~~~ 75 (245)
+.+.+...++.|+.+.+..++ +.|..+ |...++.+..++ . |..+.++.+.+.|..|+.. -++.+ ...
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A 77 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLL----QNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLKDRTGFAVI-HDA 77 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHT----TSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred HhhHHHHHHHcCCHHHHHHHH----hCCCCccccCccCccHHHHHH-c-CcHHHHHHHHHcCCCCCCCCCCCCCHH-HHH
Confidence 344555566666666665444 344332 223334443333 3 6677777776666655432 22223 333
Q ss_pred cccCcHHHHHHHH
Q 043265 76 GCFGAVDEGFQHF 88 (245)
Q Consensus 76 ~~~g~~~~a~~~~ 88 (245)
++.|+.+-+..++
T Consensus 78 ~~~~~~~~v~~Ll 90 (162)
T 1ihb_A 78 ARAGFLDTLQTLL 90 (162)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3455555554444
No 246
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=40.22 E-value=50 Score=22.45 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=62.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhccc
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCF 78 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~ 78 (245)
.++.+...++.|+.+....+++.-. .+..+...++.+..+ +..|..+.++.+.+.|..++... .+.+. ..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLA-AQYGHFSTTEVLLRAGVSRDARTKVDRTPLH-MAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC--CCCCCTTCCCHHHHH-HHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC--CCCcCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHc
Confidence 3456667788888888766665422 222333334444444 45678888888888887765432 23333 33455
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchH---HHHHHHHHHhccCCHHHHHHHHHh
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLE---HFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
|+.+-+..+++ .|..++.. -. +.+..-++.|+.+-+..+++.
T Consensus 78 ~~~~~v~~Ll~-----~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 122 (153)
T 1awc_B 78 GHANIVEVLLK-----HGADVNAKDMLKM-TALHWATEHNHQEVVELLIKY 122 (153)
T ss_dssp TCHHHHHHHHT-----TTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHHH-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 67665554443 34443321 22 233334456777666666554
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=39.87 E-value=1.1e+02 Score=22.38 Aligned_cols=106 Identities=9% Similarity=0.004 Sum_probs=68.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
|..+=....+.|+++-|++.|..... |..+.-.|.-.|+.+...+|.+... ...-++....++--.|++
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~--~~g~~n~af~~~l~lGdv 105 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ--TREDFGSMLLNTFYNNST 105 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH--HCccHHHHHHHHHHcCCH
Confidence 66677788899999999999999865 4555555555666666555522211 112356666667778999
Q ss_pred HHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 82 DEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
+++.++|.+.. -.|-.. -.....|..+.|.++.+.+.
T Consensus 106 ~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 106 KERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 99999886442 222211 11222667788888888775
No 248
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=39.60 E-value=34 Score=24.10 Aligned_cols=57 Identities=19% Similarity=0.004 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcH
Q 043265 8 HLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNW 65 (245)
Q Consensus 8 ~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~ 65 (245)
..++.|+.+.+..+++.-...--.+|...++.|..+ +..|..+.++.+.+.|..++.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~ 67 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-CREGRSAVVEMLIMRGARINV 67 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH-HHcCcHHHHHHHHHcCCCCCC
Confidence 345556666665555432111011233333333333 345666666666666666553
No 249
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=39.27 E-value=91 Score=21.36 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=41.6
Q ss_pred CcHhhHHHHHHHhcccCcHHH---HHHHHHHhhhhcCCCc-chHHHH-HHHHHHhccCCHHHHHHHHHhcC-CCCc
Q 043265 63 PNWSTFVGVITACGCFGAVDE---GFQHFESVTRDYDINP-TLEHFL-GIVDLYGRLQKIAEAREFIRNMQ-IDAS 132 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~~p-~~~~~~-~li~~y~~~g~~~~a~~~~~~m~-~~~~ 132 (245)
|+..+--.+--++.+..+..+ +..+++++..+ + .| ...-|. .|--++.|.|++++|.+.++.+- .+|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 555554455556666665555 77788777653 1 23 122222 45667888888888888887763 4664
No 250
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=38.29 E-value=95 Score=21.27 Aligned_cols=87 Identities=5% Similarity=-0.162 Sum_probs=56.7
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHH---HHHHHHhcC-CC-C-cHHHHHHHH-HHHHhCCC
Q 043265 76 GCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAE---AREFIRNMQ-ID-A-SSVVWETLE-KYAQTEPG 148 (245)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~---a~~~~~~m~-~~-~-~~~~~~~li-~~~~~~g~ 148 (245)
.....+..+++-+...... |. |+..+---+-.++.++...++ +..+++..- .. | +..-+.-.+ -++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3344555666666655442 33 666666778888999888776 788888774 22 3 233333344 56667899
Q ss_pred Cccccccc--cccccccc
Q 043265 149 LLLGEPSS--SLRLSNKK 164 (245)
Q Consensus 149 ~~~~~~~~--~~~~~~~~ 164 (245)
.+.|.... +++..|+.
T Consensus 90 Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 99988777 88877766
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=37.86 E-value=37 Score=25.67 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhccc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCF 78 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~ 78 (245)
+.|...++.|+.+-+ +.+.+.|..|+ ....+.+ ...+..|..+.++.+.+.|..++.... .+.+...+..
T Consensus 41 t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 41 TPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115 (285)
T ss_dssp CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred cHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence 345666777877655 44445565443 2233333 334466888999988888887754321 1234444567
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchH------------HHHHHHHHHhccCCHHHHHHHHHhcCC---CCcHHHHHHHHHHH
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLE------------HFLGIVDLYGRLQKIAEAREFIRNMQI---DASSVVWETLEKYA 143 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~------------~~~~li~~y~~~g~~~~a~~~~~~m~~---~~~~~~~~~li~~~ 143 (245)
|+.+-...+++. |..++.. .-.+.+..-++.|+.+-+..+++.... .+|..-++.+..++
T Consensus 116 ~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 116 GKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190 (285)
T ss_dssp TCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 777766665542 3333221 011344455667888888888876542 23344455555555
Q ss_pred Hh
Q 043265 144 QT 145 (245)
Q Consensus 144 ~~ 145 (245)
..
T Consensus 191 ~~ 192 (285)
T 1wdy_A 191 LS 192 (285)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 252
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=35.92 E-value=47 Score=21.34 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=38.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhcccC
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFL---DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCFG 79 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~g 79 (245)
.+...++.|+.+-...+++ .|..+ |...++.+..+ +..+..+.++.+.+.|..++.... .+.+...+..|
T Consensus 5 ~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 5 PLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp HHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHH-HHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 3445566677665544444 33322 22223333333 345677777777777766543221 12233334456
Q ss_pred cHHHHHHHH
Q 043265 80 AVDEGFQHF 88 (245)
Q Consensus 80 ~~~~a~~~~ 88 (245)
+.+-+..++
T Consensus 80 ~~~~~~~Ll 88 (126)
T 1n0r_A 80 HLEVVKLLL 88 (126)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 665554444
No 253
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.43 E-value=1.1e+02 Score=23.37 Aligned_cols=48 Identities=6% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhcCCCcch------HHHHHHHHHHhccCCHHHHHHHHHhcC
Q 043265 81 VDEGFQHFESVTRDYDINPTL------EHFLGIVDLYGRLQKIAEAREFIRNMQ 128 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~y~~~g~~~~a~~~~~~m~ 128 (245)
++.|.-+|+.+..+.....+. ..-...+-.|.+.|.+++|.++|++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 566788888887653222221 112355778899999999999998774
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=35.36 E-value=1.2e+02 Score=21.92 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=46.4
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC-----------------------cchHH-HHHHHHHHhccCCHHHHH
Q 043265 66 STFVGVITACGCFGAVDEGFQHFESVTRDYDIN-----------------------PTLEH-FLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 66 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----------------------p~~~~-~~~li~~y~~~g~~~~a~ 121 (245)
.++..+-.++...|++..|...|++........ ++... | -+-.+|.+.|+.++|.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elky-kia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKY-KLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHH-HHHHHHHHHCCHHHHH
Confidence 355666677778888888888887642211111 11111 3 3678899999999999
Q ss_pred HHHHhcCCCCcHHHHHHHH
Q 043265 122 EFIRNMQIDASSVVWETLE 140 (245)
Q Consensus 122 ~~~~~m~~~~~~~~~~~li 140 (245)
.+++.++.+--..--|.+|
T Consensus 143 ~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 143 AILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp HHHHTSCGGGCCHHHHHHH
T ss_pred HHHhcCCchhcCHHHHHHH
Confidence 9999987333333334454
No 255
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.70 E-value=18 Score=21.36 Aligned_cols=34 Identities=3% Similarity=-0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hhhh
Q 043265 15 VKAALEVMDKLKNIGIFLDSPDIIELLNVC-MDLK 48 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~-~~~~ 48 (245)
.++|++.|.+|.+..-.++.-||.-.|+.. ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 367888888887544344556899988888 5543
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.38 E-value=1.8e+02 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=16.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDK 24 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~ 24 (245)
|.++..-|.+.+++++|.+++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Confidence 55677777788888888777554
No 257
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=34.14 E-value=1e+02 Score=20.52 Aligned_cols=85 Identities=12% Similarity=-0.032 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh--hhHHHHHHHH-hcCCCCcHhhHHHHHHHhcccCcHHHHHHHHHH
Q 043265 14 EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDL--KLLEAGKRFE-NDGVRPNWSTFVGVITACGCFGAVDEGFQHFES 90 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~~~~~~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 90 (245)
.+.+|+.-+++.... .+|.....+++..+-.. -+++..+... ..|+ .+.++.-++....+.|-+++. +.|..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~ 77 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLE 77 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHH
Confidence 466777777776554 46777777777776443 4555555443 3677 577888888888888888766 56666
Q ss_pred hhhhcCCCcchHHHH
Q 043265 91 VTRDYDINPTLEHFL 105 (245)
Q Consensus 91 m~~~~~~~p~~~~~~ 105 (245)
|...+++ .+.+|+
T Consensus 78 m~~~RN~--~vH~Y~ 90 (119)
T 1wty_A 78 MLELRNL--TNHTYD 90 (119)
T ss_dssp HHHHHHH--GGGTTS
T ss_pred HHHHhhH--hccccc
Confidence 7554332 344444
No 258
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.67 E-value=11 Score=28.98 Aligned_cols=116 Identities=7% Similarity=-0.083 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhh--hhhhHHHHHHHHhcCCC------------
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFL-------DSPDIIELLNVCM--DLKLLEAGKRFENDGVR------------ 62 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~~~~~~~~~~~------------ 62 (245)
+.|...++.|+.+.+..+++...+.+... |...++.|..++. +.|..+.++.+.+.|..
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 45666778899998888888777666432 4455667777764 35777777766655432
Q ss_pred --CcHhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcchHH----------------HHHHHHHHhccCCHHHHHHHH
Q 043265 63 --PNWSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPTLEH----------------FLGIVDLYGRLQKIAEAREFI 124 (245)
Q Consensus 63 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----------------~~~li~~y~~~g~~~~a~~~~ 124 (245)
.|..-++.|..| +..|+.+-+..+++. |..++... -.+.+..-++.|+.+-+..++
T Consensus 95 ~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~-----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 95 TDSYYKGQTALHIA-IERRNMTLVTLLVEN-----GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp CSTTTTTCCHHHHH-HHTTCHHHHHHHHHT-----TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred ccccCCCCCHHHHH-HHcCCHHHHHHHHHC-----CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 222333444444 456777666655542 33333211 113334445567777777777
Q ss_pred H
Q 043265 125 R 125 (245)
Q Consensus 125 ~ 125 (245)
+
T Consensus 169 ~ 169 (273)
T 2pnn_A 169 Q 169 (273)
T ss_dssp H
T ss_pred h
Confidence 6
No 259
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.67 E-value=25 Score=25.28 Aligned_cols=135 Identities=12% Similarity=0.021 Sum_probs=73.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhcccCcHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCFGAVD 82 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~g~~~ 82 (245)
+...+..|+.+....++..-...--.+|...++.|..+ ++.|..+.++.+.+.|..|+... .+.+ ...+..|+.+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~ 86 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTE 86 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH
Confidence 44556778888887776542200012333344444444 46688888888888888776443 3333 3445567887
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhcC---CCCcHHHHHHHHHHHH
Q 043265 83 EGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNMQ---IDASSVVWETLEKYAQ 144 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m~---~~~~~~~~~~li~~~~ 144 (245)
-+..+++.-..+.. ..|..-. +.+..-++.|+.+-+..+++.-. -.+|..-++.|..++.
T Consensus 87 ~~~~Ll~~~~~~~~-~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 87 ILAYMLKHATPDLN-KHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149 (201)
T ss_dssp HHHHHHHHSCCCTT-CCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHhccCcccc-cccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence 77776643221111 1122112 22344456788888888877652 1234444555555553
No 260
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.58 E-value=90 Score=21.28 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCC---cHhhHHHHHHHhcccC--cHHHHHHHHHHhhh
Q 043265 37 IIELLNVCMDLKLLEAGKRFENDGVRP---NWSTFVGVITACGCFG--AVDEGFQHFESVTR 93 (245)
Q Consensus 37 ~~~ll~~~~~~~~~~~~~~~~~~~~~p---~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~ 93 (245)
.+.+|.-|...|+.++|.+..+.=-.| ......++..+.-+.+ ..+....++..+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 455566666666666665543321112 1233344444444432 13445555555543
No 261
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.85 E-value=56 Score=23.98 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh-----
Q 043265 4 SELKHLCREREVKAALEVMDKLKN-----------IGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST----- 67 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~-----------~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t----- 67 (245)
+.|...++.|+.+-+..+++.-.. .|. ++ +...+..|..+.++.+.+.|..++...
T Consensus 39 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~--t~------L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 110 (232)
T 2rfa_A 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ--TA------LHIAVINQNVNLVRALLARGASVSARATGSVF 110 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC--CH------HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred CHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc--CH------HHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence 345666778888888777765322 122 22 222235577888888888887766531
Q ss_pred ----------HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHH
Q 043265 68 ----------FVGVITACGCFGAVDEGFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAR 121 (245)
Q Consensus 68 ----------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~ 121 (245)
-.+.|...+..|+.+-+..+++ .|..++ ..-. +-+..-+..|+.+-+.
T Consensus 111 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~ 171 (232)
T 2rfa_A 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-----HGADIRAQDSLGN-TVLHILILQPNKTFAC 171 (232)
T ss_dssp SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-----TTCCTTCCCTTSC-CHHHHHHTCSCHHHHH
T ss_pred eecccccccCCCCHHHHHHHcCCHHHHHHHHH-----CCCCCCCCCCCCC-CHHHHHHHcCChHHHH
Confidence 2233444455677766665554 344333 2222 3344456677777663
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.53 E-value=72 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHhcCCC
Q 043265 15 VKAALEVMDKLKNIGIFLD-SPDIIELLNVCMDLKLLEAGKRFENDGVR 62 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 62 (245)
..++.++|..|.++||--. ..-|...-..+-..|.+..|.++.+.|+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555544444321 23333333334444444444444444433
No 263
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=31.43 E-value=38 Score=26.66 Aligned_cols=111 Identities=8% Similarity=0.062 Sum_probs=65.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhccc
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIF---LDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCF 78 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~ 78 (245)
-|...++.|+.+....++.. .+.. .|....+.|.. .+..|..+.++.+.+.|..++... ++.| ...+..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 101 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHL-AAGYNRVRIVQLLLQHGADVHAKDKGGLVPL-HNACSY 101 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHH-HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHH-HHHcCCHHHHHHHHHcCCCCCccCCCCCcHH-HHHHHC
Confidence 45566778888888777754 2332 23333344444 446688999998888888775442 2333 444566
Q ss_pred CcHHHHHHHHHHhhhhcCCCcch---HHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 79 GAVDEGFQHFESVTRDYDINPTL---EHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
|+.+-+..+++ .|..++. .-++ .+..-+..|+.+-+..+++.
T Consensus 102 g~~~iv~~Ll~-----~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 146 (351)
T 3utm_A 102 GHYEVTELLLK-----HGACVNAMDLWQFT-PLHEAASKNRVEVCSLLLSH 146 (351)
T ss_dssp TCHHHHHHHHH-----TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHH-----CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 77776666654 3443332 2223 33444567888887777764
No 264
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.80 E-value=62 Score=20.86 Aligned_cols=64 Identities=9% Similarity=-0.056 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHH
Q 043265 20 EVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 20 ~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
.+++.+.+.|+ -+..-...+-. .......+.++++...=.+-....|..+++++...|+..-|.
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35556666655 22222332222 101124444554444434444556666666665555554443
No 265
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=30.21 E-value=35 Score=23.81 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhcccCcHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCFGAVDE 83 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~g~~~~ 83 (245)
|...++.|+.+....++..-...--.+|...++.|..++ ..|..+.++.+.+.|..++.... .+.|...+..|+.+-
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-AFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI 84 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHH
Confidence 445567788877766665422100112333444444443 55777878777777776654221 123333445666655
Q ss_pred HHHHHHHhhhhcCCCcch---HHHHHHHHHHhccCCHHHHHHHHHh
Q 043265 84 GFQHFESVTRDYDINPTL---EHFLGIVDLYGRLQKIAEAREFIRN 126 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~~---~~~~~li~~y~~~g~~~~a~~~~~~ 126 (245)
+..+++ .|..++. .-.+ .+..-++.|+.+-+..+++.
T Consensus 85 v~~Ll~-----~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 124 (172)
T 3v30_A 85 VGLLLE-----RDVDINIYDWNGGT-PLLYAVRGNHVKCVEALLAR 124 (172)
T ss_dssp HHHHHT-----TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHH-----cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 554442 2333322 1122 23333455666666555543
No 266
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=29.99 E-value=2.1e+02 Score=22.84 Aligned_cols=89 Identities=9% Similarity=-0.031 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhh-----hhHHHHHHHHhc--CCCCc--HhhHHHHHHHhccc-CcH
Q 043265 15 VKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDL-----KLLEAGKRFEND--GVRPN--WSTFVGVITACGCF-GAV 81 (245)
Q Consensus 15 ~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~-----~~~~~~~~~~~~--~~~p~--~~t~~~ll~~~~~~-g~~ 81 (245)
..+|...+++..+- -|+ ...|..+-..|.+. |+.+.|+++.++ -+.|+ ..++...-..+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 44566666666554 344 56788888888884 899999887655 35663 67788888889885 999
Q ss_pred HHHHHHHHHhhhhcCCC--cchHHHHH
Q 043265 82 DEGFQHFESVTRDYDIN--PTLEHFLG 106 (245)
Q Consensus 82 ~~a~~~~~~m~~~~~~~--p~~~~~~~ 106 (245)
+.+.+.+++... .... |+....+.
T Consensus 257 ~~a~~~L~kAL~-a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALA-IDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHH-CCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCCChhHHHH
Confidence 999999998876 4555 66544433
No 267
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.85 E-value=1.1e+02 Score=19.33 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q 043265 113 RLQKIAEAREFIRNMQIDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g~ 148 (245)
.....+.|.++++.+. ..+...|..++.+....+.
T Consensus 48 ~~t~~~kar~Lld~l~-~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMIL-KKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHH-HcCHHHHHHHHHHHHHcCH
Confidence 3566778888888887 6677778888877776654
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.81 E-value=2.4e+02 Score=23.44 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHhhhhhhHHHHHHH-------HhcCCCCcHh----hHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFL--DSPDIIELLNVCMDLKLLEAGKRF-------ENDGVRPNWS----TFVG 70 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~~~~~-------~~~~~~p~~~----t~~~ 70 (245)
.+-.-|.+.|++++|.+.|.++...-..+ -...+-.+++.+...+++..+... ...+-.|+.. .|..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 45577899999999999999998653333 356777888888888877776543 3344444432 2333
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhc
Q 043265 71 VITACGCFGAVDEGFQHFESVTRDY 95 (245)
Q Consensus 71 ll~~~~~~g~~~~a~~~~~~m~~~~ 95 (245)
++ +...+++..|-..|-+.....
T Consensus 216 l~--~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 216 IH--CLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HG--GGGTSCHHHHHHHHHHHHHHS
T ss_pred HH--HHHhChHHHHHHHHHHHhccC
Confidence 33 445788888888887765543
No 269
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=29.70 E-value=2.3e+02 Score=23.12 Aligned_cols=111 Identities=6% Similarity=-0.155 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHhhhhhhHHHHHHHHhcCC-----CCcHhhHHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGI------FLDSPDIIELLNVCMDLKLLEAGKRFENDGV-----RPNWSTFVGVI 72 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~------~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~-----~p~~~t~~~ll 72 (245)
+-+..-++.|+.+-+..++ +.|. .++....+.|..|+ +.|..+.++-+.+.|. .++...++.|.
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll----~~ga~~~~~~~~~~~~~tpL~~Aa-~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh 168 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLC----LLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHT----TC--CCSSCC--CHHHHHHHHHHH-HTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCcHHHHHHhccCCCCHHHHHH-HcCCHHHHHHHHhCCCCccccccCCCCCCHHH
Confidence 4455567778877765554 3443 34566666665554 5689999999988884 33444455554
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCC-----cchHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 73 TACGCFGAVDEGFQHFESVTRDYDIN-----PTLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~-----p~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
.| +..|..+-+..+++ .|.. .|..-++.|..+-++.|+.+-+.-+++
T Consensus 169 ~A-a~~G~~eiv~~Ll~-----~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 169 LA-AENGHLHVLNRLCE-----LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp HH-HHTTCHHHHHHHHH-----SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred HH-HHCCCHHHHHHHHH-----cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence 44 56788877766664 3433 233345566655547888887776664
No 270
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.07 E-value=52 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 043265 12 EREVKAALEVMDKLKNIGIFL 32 (245)
Q Consensus 12 ~g~~~~A~~lf~~m~~~g~~p 32 (245)
.-+++.|...|.+++..|--|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 358999999999998765444
No 271
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=28.62 E-value=16 Score=24.67 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcH
Q 043265 5 ELKHLCREREVKAALEVMDKLKNIGIFL---DSPDIIELLNVCMDLKLLEAGKRFENDGVRPNW 65 (245)
Q Consensus 5 ll~~~~~~g~~~~A~~lf~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~ 65 (245)
.|...++.|+.+.+..++ +.|..+ |...++.|..++. |..+.++.+.+.|..++.
T Consensus 15 ~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~ 72 (136)
T 1d9s_A 15 GLATAAARGQVETVRQLL----EAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNC 72 (136)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCC
Confidence 344445555554443333 233322 2223334444433 666666666555555543
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.52 E-value=78 Score=22.51 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCc-HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 043265 49 LLEAGKRFENDGVRPN-WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINP 99 (245)
Q Consensus 49 ~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 99 (245)
..+.+..|...||=-. ..-|-.--..+...|++.+|.+||+.=.+ .+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 4445555655555332 44456666666667777777777765444 34455
No 273
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.57 E-value=1.2e+02 Score=19.45 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=13.6
Q ss_pred CHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Q 043265 116 KIAEAREFIRNMQIDASSVVWETLEKYAQTEP 147 (245)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~li~~~~~~g 147 (245)
..+.|.++++.++ ..+...|..++.+....|
T Consensus 52 ~~~~ar~Lld~L~-~rG~~Af~~F~~aL~et~ 82 (97)
T 3ygs_P 52 RRDQARQLIIDLE-TRGSQALPLFISCLEDTG 82 (97)
T ss_dssp HHHHHHHHHHHHT-TSCTTHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHH-HcChHHHHHHHHHHHHcC
Confidence 3444444444444 333344444444444333
No 274
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=27.09 E-value=92 Score=20.55 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHhcCCCCc
Q 043265 45 MDLKLLEAGKRFENDGVRPN 64 (245)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~ 64 (245)
++.|..+.++.+.+.|..++
T Consensus 22 ~~~g~~~~v~~Ll~~g~~~~ 41 (136)
T 2jab_A 22 ARAGQDDEVRILMANGADVN 41 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTT
T ss_pred HHhCCHHHHHHHHHcCCCCC
Confidence 34455566555555555443
No 275
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.07 E-value=75 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=29.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 043265 3 NSELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMD 46 (245)
Q Consensus 3 n~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~ 46 (245)
+.+|.-|...|+.++|.+.++++...... ..+....+..+.-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~ 53 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLES 53 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcC
Confidence 57899999999999999999999643322 22334444444443
No 276
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.01 E-value=78 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLE 51 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 51 (245)
.++..+...+..-.|.++++.+++.+...+..|.--.|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 456677777767789999999988877778777777778887776443
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.66 E-value=46 Score=24.54 Aligned_cols=138 Identities=5% Similarity=-0.140 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCC----CCc---HhhHHHHHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGV----RPN---WSTFVGVIT 73 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~----~p~---~~t~~~ll~ 73 (245)
+.+...++.|+.+-+. .+.+.|..|+ ...++.+..+ +..|..+.++.+.+.+. .++ ..-.+. +.
T Consensus 48 t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~ 121 (241)
T 1k1a_A 48 TPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLA-CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LH 121 (241)
T ss_dssp CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HH
T ss_pred CHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HH
Confidence 4456667788776554 4444565443 2334444444 45677888887776654 222 222333 33
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCcchH---HHHHHHHHHhccCCHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCC
Q 043265 74 ACGCFGAVDEGFQHFESVTRDYDINPTLE---HFLGIVDLYGRLQKIAEAREFIRNMQ--IDASSVVWETLEKYAQTEPG 148 (245)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~y~~~g~~~~a~~~~~~m~--~~~~~~~~~~li~~~~~~g~ 148 (245)
..++.|+.+-...+++ .|..++.. ...+.+..-++.|+.+-+..+++.-. -.+|..-++.|.-|+ ..|+
T Consensus 122 ~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~ 195 (241)
T 1k1a_A 122 VAVNTECQETVQLLLE-----RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-GRGL 195 (241)
T ss_dssp HHHHHTCHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH-HHTC
T ss_pred HHHHcCCHHHHHHHHH-----cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HcCC
Confidence 4446677766666654 24333321 12234445567788887777776422 122333344444443 3455
Q ss_pred Ccccc
Q 043265 149 LLLGE 153 (245)
Q Consensus 149 ~~~~~ 153 (245)
.+..+
T Consensus 196 ~~~v~ 200 (241)
T 1k1a_A 196 LPLVR 200 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 278
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=26.62 E-value=2.5e+02 Score=22.50 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHHHHHH
Q 043265 16 KAALEVMDKLKNI---GIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGFQHFE 89 (245)
Q Consensus 16 ~~A~~lf~~m~~~---g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 89 (245)
++|..+|..+.+. ...++ ......++..+-+.-..+.+..+.+.|+.|...++.=++..+++.=.++.+.++|+
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD 268 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWD 268 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHH
Confidence 3455566665432 22222 22233344445555677778888999999999999999999999999999999999
Q ss_pred HhhhhcCCCcc-hH--HHHHHHHHH----hccCCHHHHHHHHHhcCCC-CcHHHHHHHH-HHHH
Q 043265 90 SVTRDYDINPT-LE--HFLGIVDLY----GRLQKIAEAREFIRNMQID-ASSVVWETLE-KYAQ 144 (245)
Q Consensus 90 ~m~~~~~~~p~-~~--~~~~li~~y----~~~g~~~~a~~~~~~m~~~-~~~~~~~~li-~~~~ 144 (245)
.+-.+ |-... .. ..-+++..+ .+..++++...++++++.. -+..--..+| .|+.
T Consensus 269 ~~l~~-g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~ 331 (345)
T 2qfz_A 269 TYQSE-PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYR 331 (345)
T ss_dssp HHTTS-TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHH
Confidence 99763 43322 22 222334332 2357888999999888721 1222334555 4443
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.42 E-value=1.7e+02 Score=23.01 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=18.0
Q ss_pred CcHhhHHHHHHHhcccCcHHHHHHHHHHh
Q 043265 63 PNWSTFVGVITACGCFGAVDEGFQHFESV 91 (245)
Q Consensus 63 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 91 (245)
-|...-..++.-+|-.|+++.|.+=++..
T Consensus 29 ~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 29 KDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35555566666667777776666655544
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.00 E-value=2.7e+02 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCCCCc---HHHHHHHHHHHHh
Q 043265 103 HFLGIVDLYGRLQKIAEAREFIRNMQIDAS---SVVWETLEKYAQT 145 (245)
Q Consensus 103 ~~~~li~~y~~~g~~~~a~~~~~~m~~~~~---~~~~~~li~~~~~ 145 (245)
..+.+|.=|...|+.++|.+.++++. .|. ..+..++..+.-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fhhe~V~~av~~aLE~ 263 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLES 263 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-CCcchHHHHHHHHHHHHcc
Confidence 46788999999999999999999997 332 3445555555544
No 281
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.69 E-value=35 Score=19.28 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCH
Q 043265 13 REVKAALEVMDKLKNIGIFLDS 34 (245)
Q Consensus 13 g~~~~A~~lf~~m~~~g~~p~~ 34 (245)
+++..|+++++.+++.|-.|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 4678999999999999877754
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.66 E-value=81 Score=22.29 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCC---cHhhHHHHHHHhcccC--cHHHHHHHHHHhhh
Q 043265 36 DIIELLNVCMDLKLLEAGKRFENDGVRP---NWSTFVGVITACGCFG--AVDEGFQHFESVTR 93 (245)
Q Consensus 36 t~~~ll~~~~~~~~~~~~~~~~~~~~~p---~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~ 93 (245)
..+.+|.-|...++.++|.+..+.=-.| ....+.++..+.-+.+ ..+.+..++..+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3566677777777777776654331112 2333444555555432 24445556655544
No 283
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.55 E-value=90 Score=21.31 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q 043265 6 LKHLCRER-EVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK 48 (245)
Q Consensus 6 l~~~~~~g-~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~ 48 (245)
+..+...+ ..-.|.++++.+++.+...+..|.---|+.+...|
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33443333 34445555555555544445544444444444444
No 284
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.49 E-value=55 Score=26.20 Aligned_cols=142 Identities=8% Similarity=-0.033 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGA 80 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~ 80 (245)
+.|...++.|+.+.+..+++ .|..++ ...++.|. ..+..|..+.++.+.+.|..++...-.+.|...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALH-LACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHH-HHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 45666777888877655554 455443 23344444 34456888888888888877665333344455567788
Q ss_pred HHHHHHHHHHhhhhcCCCcch--------------------HHHHHHHHHHhccC--CHHHHHHHHHhcC--CCCcHHHH
Q 043265 81 VDEGFQHFESVTRDYDINPTL--------------------EHFLGIVDLYGRLQ--KIAEAREFIRNMQ--IDASSVVW 136 (245)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~p~~--------------------~~~~~li~~y~~~g--~~~~a~~~~~~m~--~~~~~~~~ 136 (245)
.+-+..+++.-.. .|..|+. .-.+. +..-+..| +.+-+..+++.=. -..|..-+
T Consensus 97 ~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 97 TDLVVALVEGAKE-RGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp HHHHHHHHHHHHH-HTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred HHHHHHHHHhccc-cCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 8888888876433 3444332 11233 34445566 6776766666421 12233334
Q ss_pred HHHHHHHHhCCCCcccc
Q 043265 137 ETLEKYAQTEPGLLLGE 153 (245)
Q Consensus 137 ~~li~~~~~~g~~~~~~ 153 (245)
+.|..|+ ..|+.+..+
T Consensus 175 t~L~~A~-~~g~~~~v~ 190 (364)
T 3ljn_A 175 TPLMRAM-EFRNREALD 190 (364)
T ss_dssp CHHHHHH-HTTCHHHHH
T ss_pred CHHHHHH-HcCCHHHHH
Confidence 4555444 345554433
No 285
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=24.29 E-value=1.2e+02 Score=20.69 Aligned_cols=112 Identities=8% Similarity=0.031 Sum_probs=57.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhcccCcHHH
Q 043265 6 LKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCFGAVDE 83 (245)
Q Consensus 6 l~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~g~~~~ 83 (245)
+...++.|+.+....+++.-..-+ .+|...++.|..++ ..|..+.++.+.+.|..|+.... .+.+...+..|+.+-
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAA-AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 455667888777766665421111 13333444444443 45778888888887777654322 123334445666665
Q ss_pred HHHHHHHhhhhcCCCcc---hHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 84 GFQHFESVTRDYDINPT---LEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 84 a~~~~~~m~~~~~~~p~---~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
+..+++. |..++ ..-++. +..-+..|+.+-+..+++
T Consensus 85 v~~Ll~~-----g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 85 VKMLLDC-----GVDVNEYDWNGGTP-LLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp HHHHHHH-----TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHC-----CCCCCcCCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 5555542 33222 222222 333345566666665555
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.90 E-value=98 Score=21.41 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhh----hhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHH
Q 043265 23 DKLKNIGIFLDSPDIIELLNVCMD----LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVD 82 (245)
Q Consensus 23 ~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 82 (245)
+.|++.|++++..=..+ +..... ..+-+.+..+.+.+...+..|.=--|+.+...|.+.
T Consensus 11 ~~l~~~g~r~T~qR~~I-l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAI-LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHHHH-HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHH-HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44677888777643322 222222 235556666777777777777777778888888763
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.61 E-value=1.1e+02 Score=21.98 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCCc-HhhHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 043265 49 LLEAGKRFENDGVRPN-WSTFVGVITACGCFGAVDEGFQHFESVTRDYDINPT 100 (245)
Q Consensus 49 ~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 100 (245)
..+.+..|...||=-. ..-|-..-..+-..|++.+|.+||..=.+ .+-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcH
Confidence 3344556666655433 44455556666667777777777765544 455554
No 288
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.59 E-value=69 Score=22.09 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhHH
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLKLLE 51 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 51 (245)
.++..+...+..-.|.++++.+++.+...+..|.=--|+.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 456666666666678999999988877778777777777777776443
No 289
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.54 E-value=1.2e+02 Score=19.07 Aligned_cols=35 Identities=3% Similarity=0.015 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccC
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g 115 (245)
..++|...|.+|..+.+|.|+. +|...|......-
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~Dp 49 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDP 49 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCC
Confidence 4688999999998888988875 5776666555443
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=23.49 E-value=2.3e+02 Score=21.11 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=38.7
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-chHHHHHHHHHHhccCCHHHHHHHHH
Q 043265 78 FGAVDEGFQHFESVTRDYDINP-TLEHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
.++..++.++|..|.. .||-- -..-|...-..+-..|++.+|..+|+
T Consensus 92 ~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 92 SNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456799999999977 57654 35668999999999999999999996
No 291
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.29 E-value=59 Score=23.89 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhccc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGCF 78 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~ 78 (245)
+.|...++.|+.+-+.. +.+.|..++ ...++.+..+ +..|..+.++.+.+.|..++.... .+.+...+..
T Consensus 13 t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHM----LVQAGANIDTCSEDQRTPLMEA-AENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp CHHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHH-HHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHcCcHHHHHH----HHHcCCCcCccCCCCCCHHHHH-HHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 45666777888765544 444555433 2233444444 456888888888888876654321 2334444566
Q ss_pred CcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHHHHHhc
Q 043265 79 GAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEAREFIRNM 127 (245)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~~~~~m 127 (245)
|+.+-+..+++.-..+.. .++..-.+ .+..-++.|+.+-...+++.-
T Consensus 88 ~~~~~~~~Ll~~~~~~~~-~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMDVN-CQDDGGWT-PMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp TCHHHHHHHHTTTCCCTT-CCCTTSCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCCCcc-cCCCCCCC-HHHHHHHcCCHHHHHHHHHCC
Confidence 777766666542211000 11222222 334445667887777777643
No 292
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.23 E-value=96 Score=18.82 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccC
Q 043265 80 AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQ 115 (245)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g 115 (245)
..++|.+.|.+|..+.+|.|+. +|...+......-
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDP 47 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCc
Confidence 5688999999998888888764 4776666655443
No 293
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=22.78 E-value=1.2e+02 Score=20.84 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHhcCCCC
Q 043265 46 DLKLLEAGKRFENDGVRP 63 (245)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p 63 (245)
+.|..+.++.+.+.|..+
T Consensus 23 ~~g~~~~v~~Ll~~g~~~ 40 (169)
T 2y1l_E 23 RAGRDDEVRILMANGADV 40 (169)
T ss_dssp HHTCHHHHHHHHHTTCCT
T ss_pred HcCCHHHHHHHHHCCCCC
Confidence 345555555555554443
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.12 E-value=4.1e+02 Score=23.08 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHH
Q 043265 2 LNSELKHLCREREVKAALEVMDKLK 26 (245)
Q Consensus 2 ~n~ll~~~~~~g~~~~A~~lf~~m~ 26 (245)
+|.+|+.|...+.+++|..+..+..
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc
Confidence 6888999999999999999888875
No 295
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.96 E-value=3.1e+02 Score=21.68 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhc-----CCCCCHHHHHH---HHHHhhhhhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcHHHHH
Q 043265 14 EVKAALEVMDKLKNI-----GIFLDSPDIIE---LLNVCMDLKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAVDEGF 85 (245)
Q Consensus 14 ~~~~A~~lf~~m~~~-----g~~p~~~t~~~---ll~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 85 (245)
.-++|..+|..+... ...|+...... .+..+.+.-..+.+..+.+.|+.|...++.=++..+++.=.++.+.
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~l 243 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVA 243 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHH
Confidence 345677777776532 12344333222 2333444556777888899999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHHH----hccCCHHHHHHHHHhcCCCCcHHHHHHHH-HHHH
Q 043265 86 QHFESVTRDYDINPTLEHFLGIVDLY----GRLQKIAEAREFIRNMQIDASSVVWETLE-KYAQ 144 (245)
Q Consensus 86 ~~~~~m~~~~~~~p~~~~~~~li~~y----~~~g~~~~a~~~~~~m~~~~~~~~~~~li-~~~~ 144 (245)
++|+.+-.+ |..--....-+++..+ .+..+.++...++++..-..+......+| .|+.
T Consensus 244 rlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~ 306 (331)
T 3qye_A 244 RVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFE 306 (331)
T ss_dssp HHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 999998774 5442222222333332 23457888888888743144555566677 5554
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.85 E-value=68 Score=23.38 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhhH--HHHHHHhcc
Q 043265 4 SELKHLCREREVKAALEVMDKLKNIGIFLD----SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWSTF--VGVITACGC 77 (245)
Q Consensus 4 ~ll~~~~~~g~~~~A~~lf~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t~--~~ll~~~~~ 77 (245)
+.+...++.|+.+-+..++ +.|..++ ...++.+ ...+..|..+.++.+.+.|..|+.... .+.+...+.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 118 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPL-HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChh-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 3566777888876665444 4444322 2123333 444566888888888888877764322 133444456
Q ss_pred cCcHHHHHHHHH
Q 043265 78 FGAVDEGFQHFE 89 (245)
Q Consensus 78 ~g~~~~a~~~~~ 89 (245)
.|+.+-+..+++
T Consensus 119 ~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 119 FGHTSIVAYLIA 130 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 677776665554
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.68 E-value=1.1e+02 Score=21.39 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhh----hhhHHHHHHHHhcCCCCcHhhHHHHHHHhcccCcH
Q 043265 22 MDKLKNIGIFLDSPDIIELLNVCMD----LKLLEAGKRFENDGVRPNWSTFVGVITACGCFGAV 81 (245)
Q Consensus 22 f~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 81 (245)
-..|++.|++++..=.. ++..... ..+-+.+..+.+.+...+..|.=-.|..+...|.+
T Consensus 15 ~~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34466777766543322 2222222 23455556666666666666666666677777765
No 298
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.63 E-value=50 Score=29.05 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhccCCHHHHHH
Q 043265 71 VITACGCFGAVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRLQKIAEARE 122 (245)
Q Consensus 71 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~g~~~~a~~ 122 (245)
+|..|.+.|..+.|.+++..+-.+ ..-+...| .-+..|+|+|+++....
T Consensus 522 vL~iCa~l~L~~~ar~I~k~~g~k--~l~~g~~g-eAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 522 MLSICVEWRLPEIAKEIYTTLGNQ--MLSAHNII-ESIANFSRAGKYELVKS 570 (570)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHCCChHHHHHHHHHHHHH--HHHCccHH-HHHHHHHHcCChhhccC
No 299
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=20.46 E-value=4.2e+02 Score=22.94 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred hhHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh--hHHHHHHHHhc---CCCCcHh
Q 043265 2 LNSELKHLCRERE----------VKAALEVMDKLKNIGIFLDSPDIIELLNVCMDLK--LLEAGKRFEND---GVRPNWS 66 (245)
Q Consensus 2 ~n~ll~~~~~~g~----------~~~A~~lf~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~~~~~~~~---~~~p~~~ 66 (245)
||.-=..+.+.|+ ++++++.++.+.+.+-+ +...|+---.++.+.+ .++++.+.... --+-|..
T Consensus 66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~ 144 (567)
T 1dce_A 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH 144 (567)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc
Q ss_pred hHHHHHHHhcccC-cHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHhcc--------------CCHHHHHHHHHhcC--C
Q 043265 67 TFVGVITACGCFG-AVDEGFQHFESVTRDYDINPTLEHFLGIVDLYGRL--------------QKIAEAREFIRNMQ--I 129 (245)
Q Consensus 67 t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~y~~~--------------g~~~~a~~~~~~m~--~ 129 (245)
.|+.---...+.| ..+++.+.++.+.+ .... +...|+-.-.++.+. +.++++.+.+++.- .
T Consensus 145 aW~~R~~~l~~l~~~~~~el~~~~~~I~-~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 145 CWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHH-HCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Q ss_pred CCcHHHHHHHHHHHHhCCCCcc------------ccccc--ccccccc
Q 043265 130 DASSVVWETLEKYAQTEPGLLL------------GEPSS--SLRLSNK 163 (245)
Q Consensus 130 ~~~~~~~~~li~~~~~~g~~~~------------~~~~~--~~~~~~~ 163 (245)
+-|...|+-.-..+...+..+. +...+ ++.+.|.
T Consensus 223 P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 223 PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
No 300
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=20.08 E-value=1.5e+02 Score=20.77 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=49.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcHhh---HHHHHHHhcccCcHH
Q 043265 9 LCREREVKAALEVMDKLKNIGIFLD---SPDIIELLNVCMDLKLLEAGKRFENDGVRPNWST---FVGVITACGCFGAVD 82 (245)
Q Consensus 9 ~~~~g~~~~A~~lf~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~g~~~ 82 (245)
-++.|+.+.+..++ +.|..|+ ..-++.+..+ +..+..+....+.+.|..++... ++.|..+ +..|+.+
T Consensus 11 Aa~~G~~~~v~~Ll----~~Gadvn~~d~~g~t~l~~a-~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A-~~~g~~~ 84 (169)
T 4gpm_A 11 AAENGNKDRVKDLI----ENGADVNASDSDGRTPLHHA-AENGHKEVVKLLISKGADVNAKDSDGRTPLHHA-AENGHKE 84 (169)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH
T ss_pred HHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHhcccchhhhccCCCCHHHHH-HHcCCHH
Confidence 34667776665544 3454332 2233333333 34456666666666666554332 2333333 3456665
Q ss_pred HHHHHHHHhhhhcCCCcch---HHHHHHHHHHhccCCHHHHHHHHH
Q 043265 83 EGFQHFESVTRDYDINPTL---EHFLGIVDLYGRLQKIAEAREFIR 125 (245)
Q Consensus 83 ~a~~~~~~m~~~~~~~p~~---~~~~~li~~y~~~g~~~~a~~~~~ 125 (245)
-+..+++ .|..++. .-++.|.. -++.|+.+-+..+++
T Consensus 85 ~v~~Ll~-----~gadvn~~d~~G~TpLh~-A~~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 85 VVKLLIS-----KGADVNAKDSDGRTPLHH-AAENGHKEVVKLLIS 124 (169)
T ss_dssp HHHHHHH-----TTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHH
T ss_pred HHHHHHH-----CcCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHH
Confidence 5444442 3443322 22223332 344566665555554
Done!