Query 043269
Match_columns 191
No_of_seqs 192 out of 1470
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 1.6E-39 5.6E-44 245.2 11.3 125 2-127 2-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.5E-37 5.3E-42 226.7 11.9 104 23-127 1-104 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-37 8.9E-42 226.5 11.8 104 26-130 1-104 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 5.9E-37 2E-41 232.2 11.6 108 25-133 1-108 (131)
5 1h89_C C-MYB, MYB proto-oncoge 100.0 8.5E-37 2.9E-41 238.1 10.7 125 2-127 33-158 (159)
6 3osg_A MYB21; transcription-DN 100.0 4.2E-36 1.4E-40 226.1 12.2 104 21-126 6-109 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-34 3.6E-39 226.2 6.3 134 23-158 3-137 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 3.2E-25 1.1E-29 166.8 5.8 105 52-158 1-106 (128)
9 2dim_A Cell division cycle 5-l 99.9 1.8E-24 6.2E-29 146.7 4.1 66 21-87 4-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 6.1E-21 2.1E-25 155.4 9.2 106 21-127 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 2E-20 7E-25 127.5 5.5 59 65-124 9-67 (73)
12 2juh_A Telomere binding protei 99.8 2E-20 6.9E-25 138.8 3.9 83 20-103 11-103 (121)
13 2din_A Cell division cycle 5-l 99.8 1.9E-19 6.5E-24 120.5 7.5 61 72-133 2-62 (66)
14 2d9a_A B-MYB, MYB-related prot 99.8 1.1E-19 3.7E-24 119.5 5.9 57 21-78 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.8 1.7E-19 5.9E-24 115.2 5.4 52 24-76 1-52 (52)
16 2roh_A RTBP1, telomere binding 99.8 3.3E-19 1.1E-23 132.4 6.7 81 19-100 24-114 (122)
17 2dim_A Cell division cycle 5-l 99.8 3.7E-19 1.3E-23 120.4 6.0 65 74-138 4-69 (70)
18 1guu_A C-MYB, MYB proto-oncoge 99.8 2.6E-19 8.8E-24 114.3 4.6 52 24-76 1-52 (52)
19 2cu7_A KIAA1915 protein; nucle 99.8 9E-19 3.1E-23 119.2 7.4 58 73-130 3-60 (72)
20 2d9a_A B-MYB, MYB-related prot 99.8 8.5E-19 2.9E-23 115.1 5.4 55 74-128 3-58 (60)
21 1ity_A TRF1; helix-turn-helix, 99.7 9.7E-19 3.3E-23 118.0 5.3 64 20-83 4-68 (69)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 2.8E-18 9.5E-23 109.5 6.1 50 77-126 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.7 4.9E-18 1.7E-22 108.4 6.0 50 77-126 1-51 (52)
24 3zqc_A MYB3; transcription-DNA 99.7 1.3E-18 4.5E-23 131.1 3.9 101 2-108 29-130 (131)
25 3sjm_A Telomeric repeat-bindin 99.7 3.4E-18 1.2E-22 113.8 4.5 56 23-78 8-64 (64)
26 1x41_A Transcriptional adaptor 99.7 6E-18 2.1E-22 111.2 5.5 54 22-76 4-57 (60)
27 1ity_A TRF1; helix-turn-helix, 99.7 1.3E-17 4.4E-22 112.5 7.0 59 73-131 4-65 (69)
28 1x41_A Transcriptional adaptor 99.7 2.8E-17 9.6E-22 107.9 6.7 53 74-126 3-56 (60)
29 1w0t_A Telomeric repeat bindin 99.7 3.3E-17 1.1E-21 104.9 6.7 49 78-126 1-52 (53)
30 2din_A Cell division cycle 5-l 99.7 6.5E-18 2.2E-22 113.0 2.1 58 21-81 4-61 (66)
31 3sjm_A Telomeric repeat-bindin 99.7 6.6E-17 2.3E-21 107.5 6.3 51 77-127 9-62 (64)
32 1w0t_A Telomeric repeat bindin 99.7 3.9E-17 1.3E-21 104.6 4.6 50 25-74 1-51 (53)
33 2yum_A ZZZ3 protein, zinc fing 99.7 2.4E-17 8.1E-22 112.8 3.7 60 21-81 3-67 (75)
34 2yum_A ZZZ3 protein, zinc fing 99.7 7.1E-17 2.4E-21 110.5 5.7 58 74-131 3-66 (75)
35 2elk_A SPCC24B10.08C protein; 99.7 7.2E-17 2.4E-21 105.3 5.0 52 22-73 5-56 (58)
36 2elk_A SPCC24B10.08C protein; 99.7 2.2E-16 7.6E-21 103.0 6.8 50 75-124 5-56 (58)
37 1gv2_A C-MYB, MYB proto-oncoge 99.6 7.1E-17 2.4E-21 117.0 3.9 72 2-75 31-103 (105)
38 2cu7_A KIAA1915 protein; nucle 99.6 7.3E-17 2.5E-21 109.7 3.5 57 21-79 4-60 (72)
39 3osg_A MYB21; transcription-DN 99.6 3E-16 1E-20 117.5 6.2 71 74-144 6-76 (126)
40 2ltp_A Nuclear receptor corepr 99.4 2.5E-17 8.5E-22 116.5 0.0 56 72-127 9-64 (89)
41 2k9n_A MYB24; R2R3 domain, DNA 99.6 7.8E-16 2.7E-20 112.1 5.6 78 79-157 1-79 (107)
42 2aje_A Telomere repeat-binding 99.6 1.4E-15 4.8E-20 110.3 5.8 80 19-98 6-94 (105)
43 2llk_A Cyclin-D-binding MYB-li 99.6 1.7E-15 5.8E-20 103.1 5.4 57 19-79 16-72 (73)
44 2ckx_A NGTRF1, telomere bindin 99.6 3.1E-15 1.1E-19 104.2 6.9 69 27-96 1-79 (83)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.5 4.9E-15 1.7E-19 100.8 5.6 52 75-126 14-69 (73)
46 2yus_A SWI/SNF-related matrix- 99.5 7.4E-15 2.5E-19 101.5 5.0 51 20-72 12-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.5 1E-14 3.5E-19 100.8 5.3 48 76-123 15-62 (79)
48 2juh_A Telomere binding protei 99.5 1.1E-14 3.9E-19 107.9 4.5 53 73-125 11-68 (121)
49 1x58_A Hypothetical protein 49 99.5 4.6E-14 1.6E-18 92.3 6.1 50 77-126 6-58 (62)
50 2ckx_A NGTRF1, telomere bindin 99.5 6.1E-14 2.1E-18 97.7 6.7 48 80-127 1-53 (83)
51 2ltp_A Nuclear receptor corepr 99.2 3.6E-15 1.2E-19 105.3 0.0 55 19-75 9-63 (89)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2E-14 6.8E-19 97.8 3.3 54 20-74 12-68 (73)
53 2roh_A RTBP1, telomere binding 99.5 7.7E-14 2.6E-18 103.5 6.3 51 75-125 27-82 (122)
54 2aje_A Telomere repeat-binding 99.5 1.9E-13 6.5E-18 99.0 7.8 52 75-126 9-65 (105)
55 1ign_A Protein (RAP1); RAP1,ye 99.4 6.6E-14 2.3E-18 114.1 4.6 55 75-129 4-64 (246)
56 2cjj_A Radialis; plant develop 99.4 5.7E-13 1.9E-17 94.6 6.5 50 78-127 7-60 (93)
57 2cjj_A Radialis; plant develop 99.2 3.1E-12 1.1E-16 90.8 3.5 49 24-73 6-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.2 2.9E-11 1E-15 79.3 6.3 46 78-123 11-56 (61)
59 3hm5_A DNA methyltransferase 1 99.2 1.1E-10 3.8E-15 82.5 7.9 67 61-131 16-87 (93)
60 1x58_A Hypothetical protein 49 99.1 1E-10 3.5E-15 76.4 4.2 49 24-74 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 99.1 2.2E-10 7.7E-15 77.5 6.1 50 76-126 5-58 (72)
62 2iw5_B Protein corest, REST co 99.0 2.8E-10 9.6E-15 92.0 6.7 49 78-126 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 99.0 2.3E-10 7.8E-15 75.0 4.8 48 24-73 10-57 (61)
64 2xag_B REST corepressor 1; ami 98.9 1.4E-09 4.7E-14 97.0 5.4 47 80-126 381-427 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.3E-09 4.4E-14 73.7 3.8 50 23-74 5-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.8 6.4E-09 2.2E-13 70.3 5.7 49 78-126 7-59 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.8 5.5E-09 1.9E-13 70.6 4.1 48 26-74 8-58 (73)
68 1fex_A TRF2-interacting telome 98.7 5.6E-09 1.9E-13 67.9 3.5 48 26-74 2-58 (59)
69 2iw5_B Protein corest, REST co 98.7 1.3E-08 4.4E-13 82.3 4.5 49 24-74 131-179 (235)
70 1fex_A TRF2-interacting telome 98.7 2.1E-08 7.2E-13 65.2 4.6 47 79-125 2-58 (59)
71 2yqk_A Arginine-glutamic acid 98.5 2.9E-07 1E-11 60.4 6.4 48 75-122 5-53 (63)
72 1ofc_X ISWI protein; nuclear p 98.5 7.5E-07 2.6E-11 75.3 9.6 103 27-130 111-279 (304)
73 1ug2_A 2610100B20RIK gene prod 98.4 9.1E-07 3.1E-11 61.6 7.2 48 81-128 35-85 (95)
74 4eef_G F-HB80.4, designed hema 98.4 7.9E-08 2.7E-12 64.6 1.4 45 26-71 20-67 (74)
75 4eef_G F-HB80.4, designed hema 98.3 8.5E-08 2.9E-12 64.4 0.9 44 78-121 19-66 (74)
76 2yqk_A Arginine-glutamic acid 98.3 7.1E-07 2.4E-11 58.6 4.8 50 21-72 4-54 (63)
77 4iej_A DNA methyltransferase 1 98.3 3.2E-06 1.1E-10 59.4 7.9 62 67-132 22-88 (93)
78 2lr8_A CAsp8-associated protei 97.6 1.3E-07 4.3E-12 62.5 0.0 45 81-126 16-63 (70)
79 2crg_A Metastasis associated p 98.1 5.5E-06 1.9E-10 55.4 5.8 43 79-121 8-51 (70)
80 4a69_C Nuclear receptor corepr 98.1 5.4E-06 1.8E-10 58.6 5.9 44 79-122 43-86 (94)
81 2xag_B REST corepressor 1; ami 98.0 5E-06 1.7E-10 74.2 4.5 47 25-73 379-425 (482)
82 3hm5_A DNA methyltransferase 1 97.9 8.3E-06 2.9E-10 57.4 4.4 49 24-73 28-80 (93)
83 4a69_C Nuclear receptor corepr 97.9 5.5E-06 1.9E-10 58.6 3.5 46 24-71 41-86 (94)
84 2crg_A Metastasis associated p 97.9 1.1E-05 3.7E-10 54.0 4.3 46 25-72 7-53 (70)
85 2ebi_A DNA binding protein GT- 97.7 3.9E-05 1.3E-09 52.9 4.7 49 79-127 4-66 (86)
86 4b4c_A Chromodomain-helicase-D 97.6 0.00012 4.2E-09 58.2 6.2 101 25-126 6-196 (211)
87 2y9y_A Imitation switch protei 97.5 0.00088 3E-08 57.9 11.3 105 27-132 124-297 (374)
88 1ug2_A 2610100B20RIK gene prod 97.5 0.00016 5.4E-09 50.3 5.1 62 11-73 18-81 (95)
89 2ebi_A DNA binding protein GT- 97.4 4.2E-05 1.4E-09 52.8 1.5 49 25-73 3-63 (86)
90 2lr8_A CAsp8-associated protei 96.1 9.3E-05 3.2E-09 48.8 0.0 46 27-74 15-62 (70)
91 4iej_A DNA methyltransferase 1 96.4 0.0036 1.2E-07 43.8 4.5 49 24-73 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 96.2 0.024 8.2E-07 36.9 7.2 47 78-124 6-57 (64)
93 1ofc_X ISWI protein; nuclear p 95.6 0.025 8.5E-07 47.7 6.5 48 79-126 110-158 (304)
94 2xb0_X Chromo domain-containin 94.8 0.02 6.9E-07 47.5 3.7 27 27-53 169-195 (270)
95 1irz_A ARR10-B; helix-turn-hel 94.6 0.064 2.2E-06 34.8 5.0 50 23-72 4-56 (64)
96 4b4c_A Chromodomain-helicase-D 94.5 0.072 2.5E-06 41.9 6.1 49 78-126 6-59 (211)
97 1wxp_A THO complex subunit 1; 90.7 1.9 6.6E-05 30.3 8.6 78 88-166 19-106 (110)
98 2xb0_X Chromo domain-containin 89.1 0.97 3.3E-05 37.3 6.8 48 79-126 3-55 (270)
99 2rq5_A Protein jumonji; develo 80.8 1.4 4.7E-05 32.0 3.4 46 47-95 64-113 (121)
100 2li6_A SWI/SNF chromatin-remod 77.0 2.3 7.7E-05 30.3 3.6 38 90-127 54-99 (116)
101 2lm1_A Lysine-specific demethy 76.8 5.2 0.00018 27.8 5.4 39 89-127 48-98 (107)
102 2li6_A SWI/SNF chromatin-remod 76.3 1.5 5.2E-05 31.3 2.5 39 36-75 53-98 (116)
103 2jrz_A Histone demethylase jar 75.8 4.7 0.00016 28.7 5.0 39 89-127 44-94 (117)
104 2y9y_A Imitation switch protei 74.9 6.1 0.00021 34.0 6.3 48 79-126 123-172 (374)
105 2o8x_A Probable RNA polymerase 74.4 8.2 0.00028 23.6 5.5 44 82-127 16-59 (70)
106 1kkx_A Transcription regulator 74.3 3.4 0.00011 29.9 3.9 40 90-129 53-100 (123)
107 3cz6_A DNA-binding protein RAP 72.7 3.2 0.00011 31.7 3.5 25 22-46 110-142 (168)
108 1ku3_A Sigma factor SIGA; heli 72.7 7.2 0.00025 24.6 4.9 44 82-127 11-58 (73)
109 2cxy_A BAF250B subunit, HBAF25 72.4 6.5 0.00022 28.2 5.1 38 90-127 56-105 (125)
110 2eqy_A RBP2 like, jumonji, at 72.3 6.7 0.00023 28.1 5.2 38 90-127 47-96 (122)
111 1ig6_A MRF-2, modulator recogn 71.3 2.7 9.2E-05 29.4 2.7 40 36-75 37-87 (107)
112 2jrz_A Histone demethylase jar 70.7 2.4 8.3E-05 30.3 2.4 40 36-75 44-93 (117)
113 1c20_A DEAD ringer protein; DN 69.0 2.7 9.1E-05 30.5 2.3 40 36-75 56-106 (128)
114 2p7v_B Sigma-70, RNA polymeras 68.4 8.3 0.00028 23.9 4.4 42 83-126 7-52 (68)
115 2kk0_A AT-rich interactive dom 66.1 18 0.00062 26.6 6.5 40 90-129 69-121 (145)
116 2cxy_A BAF250B subunit, HBAF25 66.1 3.3 0.00011 29.9 2.3 40 36-75 55-104 (125)
117 1c20_A DEAD ringer protein; DN 64.8 12 0.00042 26.9 5.2 39 89-127 56-107 (128)
118 2jxj_A Histone demethylase jar 64.8 4.6 0.00016 27.5 2.8 38 90-127 41-90 (96)
119 2lm1_A Lysine-specific demethy 63.9 3.4 0.00012 28.8 2.0 40 36-75 48-97 (107)
120 2eqy_A RBP2 like, jumonji, at 63.8 3.9 0.00013 29.4 2.3 40 36-75 46-95 (122)
121 2ib1_A Death domain containing 63.4 16 0.00055 24.7 5.4 33 84-118 5-37 (91)
122 2rq5_A Protein jumonji; develo 62.4 12 0.00041 26.9 4.7 78 24-127 5-97 (121)
123 2kk0_A AT-rich interactive dom 60.9 13 0.00045 27.4 4.9 55 36-90 68-135 (145)
124 3hug_A RNA polymerase sigma fa 60.8 24 0.00081 23.1 5.9 40 86-126 41-80 (92)
125 3ulq_B Transcriptional regulat 58.2 29 0.001 23.0 5.9 46 78-126 26-71 (90)
126 2of5_H Leucine-rich repeat and 57.0 14 0.00049 26.1 4.4 31 87-118 13-43 (118)
127 1ig6_A MRF-2, modulator recogn 55.9 6.6 0.00022 27.3 2.3 38 90-127 38-88 (107)
128 1x3u_A Transcriptional regulat 55.7 34 0.0012 21.3 5.8 42 82-126 17-58 (79)
129 2o71_A Death domain-containing 54.7 17 0.0006 25.7 4.5 36 79-118 19-54 (115)
130 2of5_A Death domain-containing 54.3 16 0.00056 25.8 4.3 40 75-118 15-54 (114)
131 3e7l_A Transcriptional regulat 53.3 28 0.00095 21.4 4.8 34 84-118 18-51 (63)
132 2p1m_A SKP1-like protein 1A; F 53.2 11 0.00038 28.0 3.4 36 49-92 118-153 (160)
133 1kkx_A Transcription regulator 52.2 2.4 8.1E-05 30.7 -0.6 38 37-75 53-97 (123)
134 1or7_A Sigma-24, RNA polymeras 51.5 32 0.0011 25.1 5.8 31 96-127 154-184 (194)
135 1je8_A Nitrate/nitrite respons 51.4 35 0.0012 22.0 5.3 43 81-126 21-63 (82)
136 3c57_A Two component transcrip 50.9 36 0.0012 22.5 5.5 43 81-126 27-69 (95)
137 1tty_A Sigma-A, RNA polymerase 49.8 31 0.0011 22.4 4.9 42 83-126 20-65 (87)
138 3i4p_A Transcriptional regulat 49.5 21 0.00072 26.2 4.4 45 85-130 3-48 (162)
139 1ntc_A Protein (nitrogen regul 45.4 42 0.0014 22.2 5.1 35 84-119 50-84 (91)
140 1fse_A GERE; helix-turn-helix 44.8 51 0.0017 20.0 5.9 44 80-126 10-53 (74)
141 2yqf_A Ankyrin-1; death domain 43.8 76 0.0026 21.8 8.5 75 83-158 14-99 (111)
142 2jpc_A SSRB; DNA binding prote 43.5 47 0.0016 19.5 4.7 37 88-126 4-40 (61)
143 1xsv_A Hypothetical UPF0122 pr 43.3 50 0.0017 22.8 5.4 43 82-126 26-68 (113)
144 3v7d_A Suppressor of kinetocho 40.6 18 0.0006 27.3 2.7 35 49-91 126-160 (169)
145 2q1z_A RPOE, ECF SIGE; ECF sig 40.1 21 0.00071 26.0 3.1 31 96-127 149-179 (184)
146 1p4w_A RCSB; solution structur 39.8 84 0.0029 21.1 6.8 45 79-126 32-76 (99)
147 2dbb_A Putative HTH-type trans 39.5 61 0.0021 23.0 5.5 44 85-129 9-53 (151)
148 3mzy_A RNA polymerase sigma-H 38.6 54 0.0019 22.8 5.1 30 96-126 122-151 (164)
149 2rnj_A Response regulator prot 38.3 46 0.0016 21.6 4.3 43 81-126 29-71 (91)
150 3cz6_A DNA-binding protein RAP 38.3 30 0.001 26.3 3.6 28 64-91 98-126 (168)
151 2ast_A S-phase kinase-associat 37.5 18 0.0006 26.7 2.3 36 49-92 119-154 (159)
152 1rp3_A RNA polymerase sigma fa 37.3 66 0.0023 24.0 5.7 38 88-126 193-230 (239)
153 2e1c_A Putative HTH-type trans 37.0 51 0.0017 24.4 4.9 45 85-130 27-72 (171)
154 1ngr_A P75 low affinity neurot 34.6 18 0.00063 24.1 1.8 29 84-118 12-40 (85)
155 2cyy_A Putative HTH-type trans 34.3 69 0.0024 22.8 5.1 44 86-130 8-52 (151)
156 1umq_A Photosynthetic apparatu 34.3 54 0.0018 21.6 4.1 35 83-118 39-73 (81)
157 1k78_A Paired box protein PAX5 32.9 1.3E+02 0.0043 21.1 9.7 68 26-98 30-107 (149)
158 2k27_A Paired box protein PAX- 32.8 1.3E+02 0.0045 21.3 9.4 66 27-97 24-99 (159)
159 1s7o_A Hypothetical UPF0122 pr 31.9 85 0.0029 21.6 5.1 43 82-126 23-65 (113)
160 1fad_A Protein (FADD protein); 31.4 27 0.00092 23.5 2.2 31 87-118 14-44 (99)
161 3i4p_A Transcriptional regulat 30.5 27 0.00092 25.6 2.3 41 32-74 3-43 (162)
162 2cg4_A Regulatory protein ASNC 27.0 1.1E+02 0.0036 21.7 5.0 43 86-129 9-52 (152)
163 3ezq_B Protein FADD; apoptosis 26.7 76 0.0026 22.5 4.0 24 93-117 12-35 (122)
164 2jvw_A Uncharacterized protein 26.2 54 0.0018 22.1 2.9 45 34-91 18-69 (88)
165 1eto_A FIS, factor for inversi 26.2 1.1E+02 0.0039 20.6 4.8 34 84-118 57-90 (98)
166 2p5v_A Transcriptional regulat 25.9 1E+02 0.0036 22.1 4.9 42 86-128 11-53 (162)
167 1u78_A TC3 transposase, transp 25.8 1.6E+02 0.0054 20.0 10.9 88 27-120 5-100 (141)
168 1i1g_A Transcriptional regulat 24.4 1.1E+02 0.0039 21.0 4.8 42 87-129 6-48 (141)
169 2pn6_A ST1022, 150AA long hypo 23.6 1E+02 0.0035 21.6 4.4 44 86-130 4-48 (150)
170 1k78_A Paired box protein PAX5 22.3 2E+02 0.0069 19.9 6.3 40 80-121 31-70 (149)
171 2ia0_A Putative HTH-type trans 22.2 1.3E+02 0.0045 22.0 4.9 44 85-129 17-61 (171)
172 1tc3_C Protein (TC3 transposas 22.1 1E+02 0.0035 16.4 5.7 38 81-120 5-42 (51)
173 1w3w_A Annexin A8; coagulation 21.8 1.4E+02 0.0048 24.6 5.4 93 29-123 21-135 (327)
174 2v79_A DNA replication protein 21.7 1.9E+02 0.0066 20.5 5.5 50 81-131 29-83 (135)
175 2lkq_A Immunoglobulin lambda-l 21.1 13 0.00045 18.9 -0.7 17 64-83 4-20 (26)
176 2e1c_A Putative HTH-type trans 21.0 78 0.0027 23.4 3.3 41 32-74 27-67 (171)
177 3eyi_A Z-DNA-binding protein 1 20.8 80 0.0027 20.5 2.8 37 29-66 7-43 (72)
178 1dw9_A Cyanate lyase; cyanate 20.5 1.1E+02 0.0036 22.9 3.9 28 88-116 16-43 (156)
179 3clo_A Transcriptional regulat 20.1 1.4E+02 0.0048 23.2 4.9 43 81-126 197-239 (258)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.6e-39 Score=245.23 Aligned_cols=125 Identities=37% Similarity=0.702 Sum_probs=103.0
Q ss_pred CCCCCCCCCCccccchHh-hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCC
Q 043269 2 DAHVGGFSSGNHRQQSEE-AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRG 80 (191)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~ 80 (191)
+..+++|++..|+.+|.. .+|++++|+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.++++
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCS
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccc
Confidence 567899999999999985 69999999999999999999999999888999999998 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
+||+|||++|+++|.+||++|..||++|||||+++|++||+.++++.
T Consensus 81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998764
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.5e-37 Score=226.75 Aligned_cols=104 Identities=44% Similarity=0.852 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHH
Q 043269 23 GVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWS 102 (191)
Q Consensus 23 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~ 102 (191)
++++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999997 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 103 KIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 103 ~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.||++|||||+++|++||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998874
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.6e-37 Score=226.54 Aligned_cols=104 Identities=31% Similarity=0.598 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHh
Q 043269 26 KGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWSKIA 105 (191)
Q Consensus 26 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia 105 (191)
||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 106 QYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 106 ~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
++|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=5.9e-37 Score=232.16 Aligned_cols=108 Identities=39% Similarity=0.673 Sum_probs=103.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 043269 25 RKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWSKI 104 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~I 104 (191)
.||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 489999999999999999999889999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHhHHHHhhcCC
Q 043269 105 AQYLPGRTDNEIKNYWRTRVQKHAKQLKC 133 (191)
Q Consensus 105 a~~l~gRt~~~~k~rw~~~l~k~~~~~~~ 133 (191)
|++|||||+++|++||++++++.+.....
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999997665443
No 5
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=8.5e-37 Score=238.13 Aligned_cols=125 Identities=37% Similarity=0.683 Sum_probs=110.8
Q ss_pred CCCCCCCCCCccccchHh-hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCC
Q 043269 2 DAHVGGFSSGNHRQQSEE-AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRG 80 (191)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~ 80 (191)
+..+++|++..|+.+|.. .+|++++|+||+|||++|+++|..||.++|..||..|+ +|++.||+.||.++|+|.++++
T Consensus 33 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~ 111 (159)
T 1h89_C 33 ANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKT 111 (159)
T ss_dssp ----------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCS
T ss_pred HHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCcccccc
Confidence 456789999999999995 68999999999999999999999999878999999997 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
+||+|||.+|++++.+||++|..||++|||||+++|++||+.++++.
T Consensus 112 ~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 112 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998764
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=4.2e-36 Score=226.11 Aligned_cols=104 Identities=38% Similarity=0.722 Sum_probs=100.6
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCC
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNR 100 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~ 100 (191)
....++|+||+|||++|+++|..||. +|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 56789999999999999999999998 9999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 101 WSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 101 W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
|..||++|||||+++|++||..++++
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998877
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.1e-34 Score=226.24 Aligned_cols=134 Identities=27% Similarity=0.485 Sum_probs=81.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCC-CH
Q 043269 23 GVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGN-RW 101 (191)
Q Consensus 23 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~-~W 101 (191)
++++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 57899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHhHHHHhhcCCCCCchHHHHhhhhccccchHHHHhh
Q 043269 102 SKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFRDAMRFVWVPRLIERIQA 158 (191)
Q Consensus 102 ~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (191)
..||.+|||||+.||++||.++|.+.+++..++.+++...........++ ...|+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~-W~~Ia~ 137 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAK 137 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC-HHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC-HHHHHH
Confidence 99999999999999999999999999999999988887655444433332 444443
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=3.2e-25 Score=166.82 Aligned_cols=105 Identities=24% Similarity=0.449 Sum_probs=71.9
Q ss_pred hhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 52 VASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGN-RWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 52 Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|..||. +|..||..|||||+.||++||.++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788997 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred cCCCCCchHHHHhhhhccccchHHHHhh
Q 043269 131 LKCDVNSKQFRDAMRFVWVPRLIERIQA 158 (191)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (191)
..++.+++.....+.....+. ...|+.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~-W~~Ia~ 106 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNR-WAEIAK 106 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSC-HHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHCcC-HHHHHH
Confidence 999988887655544444432 444443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-24 Score=146.70 Aligned_cols=66 Identities=24% Similarity=0.539 Sum_probs=63.7
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHH
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQ 87 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd 87 (191)
.+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5789999999999999999999999779999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.84 E-value=6.1e-21 Score=155.44 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=92.1
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhcCCCCCchhhhhhhhhccCCCCc-----------------
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGR-----WNAVASSAGLNRTGKSCRLRWLNYLRPDVR----------------- 78 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~----------------- 78 (191)
.+.+++++||+|||+.|+++|.+||..+ |..||++|+ |||+.||+.||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4578999999999999999999998743 999999998 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-c--------------------------------CC--------------
Q 043269 79 ------------RGNITLQEQLMILELHSR-W--------------------------------GN-------------- 99 (191)
Q Consensus 79 ------------~~~Wt~eEd~~L~~~v~~-~--------------------------------G~-------------- 99 (191)
+..||.+||-.|...+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1 11
Q ss_pred -----------CHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 100 -----------RWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 100 -----------~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.|.+||+.+|+||.+++|+||+..++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988764
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=127.49 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=47.2
Q ss_pred hhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHh
Q 043269 65 CRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRV 124 (191)
Q Consensus 65 c~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l 124 (191)
+--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999 999999999998653
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.80 E-value=2e-20 Score=138.81 Aligned_cols=83 Identities=27% Similarity=0.437 Sum_probs=78.2
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----CCCCCchhhhhhhhhccC-----CCCcCC-CCCHHHHHH
Q 043269 20 AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSA----GLNRTGKSCRLRWLNYLR-----PDVRRG-NITLQEQLM 89 (191)
Q Consensus 20 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~R~~~qc~~rw~~~l~-----p~~~~~-~Wt~eEd~~ 89 (191)
..+..++++||+|||+.|+++|.+||.++|..|+..+ + +||+.+|++||+++|. |.+++| +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4678999999999999999999999999999999985 5 9999999999999998 999999 999999999
Q ss_pred HHHHHHhcCCCHHH
Q 043269 90 ILELHSRWGNRWSK 103 (191)
Q Consensus 90 L~~~v~~~G~~W~~ 103 (191)
|+.++..||++|..
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=120.50 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=57.4
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhcCC
Q 043269 72 YLRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKC 133 (191)
Q Consensus 72 ~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~~~ 133 (191)
+|+|.+++++||+|||++|+++|..||++|..||. |+|||+.||++||.++|++.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999998876543
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=119.47 Aligned_cols=57 Identities=35% Similarity=0.525 Sum_probs=54.3
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCc
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVR 78 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~ 78 (191)
.|++++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999779999999998 99999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.78 E-value=1.7e-19 Score=115.18 Aligned_cols=52 Identities=46% Similarity=0.878 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCC
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPD 76 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~ 76 (191)
+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999878999999997 999999999999999984
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.77 E-value=3.3e-19 Score=132.45 Aligned_cols=81 Identities=30% Similarity=0.418 Sum_probs=74.6
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----CCCCCchhhhhhhhhcc-----CCCCcCCCCCHHH-HH
Q 043269 19 EAILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSA----GLNRTGKSCRLRWLNYL-----RPDVRRGNITLQE-QL 88 (191)
Q Consensus 19 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~R~~~qc~~rw~~~l-----~p~~~~~~Wt~eE-d~ 88 (191)
......++++||+|||+.|+++|.+||.++|..|+..+ + +||+.||++||.+++ +|.++++.|+++| +.
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~ 102 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLD 102 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence 34567889999999999999999999999999999874 5 899999999999999 8999999999999 89
Q ss_pred HHHHHHHhcCCC
Q 043269 89 MILELHSRWGNR 100 (191)
Q Consensus 89 ~L~~~v~~~G~~ 100 (191)
+|+.++..||++
T Consensus 103 ~v~~~h~~~g~~ 114 (122)
T 2roh_A 103 RVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhhH
Confidence 999999999974
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=120.40 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=61.0
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhcCCCCCch
Q 043269 74 RPDVRRGNITLQEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSK 138 (191)
Q Consensus 74 ~p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~~~~~~~~ 138 (191)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||.++|++.+++..++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999988887764
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.77 E-value=2.6e-19 Score=114.34 Aligned_cols=52 Identities=37% Similarity=0.694 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCC
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPD 76 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~ 76 (191)
+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999998 999999999999999985
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.76 E-value=9e-19 Score=119.19 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=55.2
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 73 LRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 73 l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
++|.+++++||+|||++|+++|.+||++|..||.+|||||+.||++||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987665
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8.5e-19 Score=115.15 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=51.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 043269 74 RPDVRRGNITLQEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHA 128 (191)
Q Consensus 74 ~p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~ 128 (191)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||.++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999998753
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.75 E-value=9.7e-19 Score=118.04 Aligned_cols=64 Identities=23% Similarity=0.349 Sum_probs=58.8
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCC-CCCchhhhhhhhhccCCCCcCCCCC
Q 043269 20 AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGL-NRTGKSCRLRWLNYLRPDVRRGNIT 83 (191)
Q Consensus 20 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~R~~~qc~~rw~~~l~p~~~~~~Wt 83 (191)
..+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467889999999999999999999998899999999965 8999999999999999999987653
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=2.8e-18 Score=109.48 Aligned_cols=50 Identities=28% Similarity=0.524 Sum_probs=46.4
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 77 VRRGNITLQEQLMILELHSRWGN-RWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 77 ~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999875
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.73 E-value=4.9e-18 Score=108.38 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=47.3
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 77 VRRGNITLQEQLMILELHSRWGN-RWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 77 ~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 799999999999999999999999875
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.73 E-value=1.3e-18 Score=131.15 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=77.9
Q ss_pred CCCCCCCCCCccccchH-hhhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCC
Q 043269 2 DAHVGGFSSGNHRQQSE-EAILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRG 80 (191)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~ 80 (191)
+.++++|++..|+.+|. ..+|++++|+||+|||++|+++|..||. +|..||..|+ ||++.||+.||.++|.+.+..+
T Consensus 29 a~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 29 TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcC
Confidence 45788999999999997 4699999999999999999999999998 8999999998 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhC
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYL 108 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l 108 (191)
+|+.+- +........+|..|++.|
T Consensus 107 ~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 107 SNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp TTSCCC----CCCCCC------------
T ss_pred CCcccc----cCchhhhhhhhhhcchhc
Confidence 887652 111122345677777765
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.72 E-value=3.4e-18 Score=113.78 Aligned_cols=56 Identities=32% Similarity=0.501 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC-CCCCchhhhhhhhhccCCCCc
Q 043269 23 GVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAG-LNRTGKSCRLRWLNYLRPDVR 78 (191)
Q Consensus 23 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~~R~~~qc~~rw~~~l~p~~~ 78 (191)
..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.+++.|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999889999999864 389999999999999988764
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=6e-18 Score=111.17 Aligned_cols=54 Identities=24% Similarity=0.485 Sum_probs=51.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCC
Q 043269 22 LGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPD 76 (191)
Q Consensus 22 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~ 76 (191)
+.+++++||+|||++|+++|..||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 578999999999999999999999779999999998 999999999999999865
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.71 E-value=1.3e-17 Score=112.50 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=54.1
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCC--CCCHHHHHHHHHHHhHHHHhhc
Q 043269 73 LRPDVRRGNITLQEQLMILELHSRWG-NRWSKIAQYLP--GRTDNEIKNYWRTRVQKHAKQL 131 (191)
Q Consensus 73 l~p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~~k~rw~~~l~k~~~~~ 131 (191)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45677899999999999999999999 79999999999 9999999999999999976553
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.8e-17 Score=107.95 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=49.6
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 74 RPDVRRGNITLQEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 74 ~p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4578899999999999999999999 8999999999999999999999998764
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.70 E-value=3.3e-17 Score=104.93 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=46.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCC--CCCHHHHHHHHHHHhHH
Q 043269 78 RRGNITLQEQLMILELHSRWG-NRWSKIAQYLP--GRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~~k~rw~~~l~k 126 (191)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999864
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.5e-18 Score=112.97 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=53.7
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCC
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGN 81 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~ 81 (191)
+|.+++++||+|||++|+++|..||. +|..||. ++ +|++.||+.||.++|+|.++++.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 68999999999999999999999999 9999999 76 89999999999999998876653
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.67 E-value=6.6e-17 Score=107.53 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=46.7
Q ss_pred CcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCC--CCCHHHHHHHHHHHhHHH
Q 043269 77 VRRGNITLQEQLMILELHSRWG-NRWSKIAQYLP--GRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 77 ~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~~k~rw~~~l~k~ 127 (191)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4788999999999999999999 69999999865 999999999999998874
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.67 E-value=3.9e-17 Score=104.62 Aligned_cols=50 Identities=30% Similarity=0.500 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCC-CCCchhhhhhhhhccC
Q 043269 25 RKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGL-NRTGKSCRLRWLNYLR 74 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~R~~~qc~~rw~~~l~ 74 (191)
++|+||+|||+.|+++|.+||.++|..||..|++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999964 6999999999999874
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=112.85 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=55.5
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCC
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGE-----GRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGN 81 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~ 81 (191)
+|++++++||+|||++|+++|..||. .+|..||+.|+ +|++.||+.||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999995 58999999998 99999999999999998777664
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-17 Score=110.48 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=53.3
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhcC------CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhc
Q 043269 74 RPDVRRGNITLQEQLMILELHSRWG------NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQL 131 (191)
Q Consensus 74 ~p~~~~~~Wt~eEd~~L~~~v~~~G------~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~ 131 (191)
+|.+++++||+|||++|+++|..|| ++|..||.+|+|||..||++||.++|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998865543
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.66 E-value=7.2e-17 Score=105.32 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=47.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhcc
Q 043269 22 LGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 22 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l 73 (191)
..+.+++||+|||++|+++|.+||.++|..||+.|+.+|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999997799999999965899999999999875
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.65 E-value=2.2e-16 Score=102.98 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=46.4
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCC-CCCHHHHHHHHHHHh
Q 043269 75 PDVRRGNITLQEQLMILELHSRWG-NRWSKIAQYLP-GRTDNEIKNYWRTRV 124 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l 124 (191)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346788999999999999999999 89999999999 999999999998864
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.64 E-value=7.1e-17 Score=117.02 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=66.4
Q ss_pred CCCCCCCCCCccccchHh-hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCC
Q 043269 2 DAHVGGFSSGNHRQQSEE-AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRP 75 (191)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p 75 (191)
+..+++|++..|+.+|.. .+|++++|+||+|||++|+++|..||. +|..||+.|+ ||++.||+.||..+|..
T Consensus 31 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 31 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC-
T ss_pred hhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 356789999999999985 689999999999999999999999998 8999999998 99999999999998764
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=7.3e-17 Score=109.67 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=53.4
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcC
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRR 79 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~ 79 (191)
.|.+++|+||+|||++|+++|..||. +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999 9999999998 999999999999998876655
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.63 E-value=3e-16 Score=117.52 Aligned_cols=71 Identities=14% Similarity=0.306 Sum_probs=64.5
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhcCCCCCchHHHHhh
Q 043269 74 RPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFRDAM 144 (191)
Q Consensus 74 ~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~~~~~~~~~~~~~~ 144 (191)
.+..++|+||+|||++|+++|..||.+|..||..|+|||+.||+.||.++|.+.+++..++.+++.....+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 76 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQK 76 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999998887754433
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-17 Score=116.46 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=53.0
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 72 YLRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 72 ~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.++|.+++++||+|||++|+++|..||++|..||.+|+|||++||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998873
No 41
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.60 E-value=7.8e-16 Score=112.08 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-CHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhcCCCCCchHHHHhhhhccccchHHHHh
Q 043269 79 RGNITLQEQLMILELHSRWGN-RWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFRDAMRFVWVPRLIERIQ 157 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (191)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+++..++.+++.....+.....+. ...|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~-W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPK-WNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSC-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcC-HHHHH
Confidence 589999999999999999995 8999999999999999999999999999999999998887655554444443 34443
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.58 E-value=1.4e-15 Score=110.27 Aligned_cols=80 Identities=31% Similarity=0.452 Sum_probs=68.6
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC---CCCCchhhhhhhhhcc-----CCCCcCCCCCHHHHHH-
Q 043269 19 EAILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAG---LNRTGKSCRLRWLNYL-----RPDVRRGNITLQEQLM- 89 (191)
Q Consensus 19 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~---~~R~~~qc~~rw~~~l-----~p~~~~~~Wt~eEd~~- 89 (191)
......++++||+|||+.|+++|.+||.++|..|+..++ .+||+.+|++||.+++ +|.+++|.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 456789999999999999999999999999999998652 3999999999999998 7999999888888766
Q ss_pred HHHHHHhcC
Q 043269 90 ILELHSRWG 98 (191)
Q Consensus 90 L~~~v~~~G 98 (191)
+++|+..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788887665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=103.09 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=48.2
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcC
Q 043269 19 EAILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRR 79 (191)
Q Consensus 19 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~ 79 (191)
.-+|++++|+||+|||++|+++|.+||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 3589999999999999999999999998 699999999 7999999999985 4444433
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.58 E-value=3.1e-15 Score=104.21 Aligned_cols=69 Identities=29% Similarity=0.469 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh----cCCCCCchhhhhhhhhcc-----CCCCcCC-CCCHHHHHHHHHHHHh
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVASS----AGLNRTGKSCRLRWLNYL-----RPDVRRG-NITLQEQLMILELHSR 96 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~~R~~~qc~~rw~~~l-----~p~~~~~-~Wt~eEd~~L~~~v~~ 96 (191)
++||+|||+.|+++|.+||.|+|..|++. |+ +||+.+|++||.+++ +|.+++| +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999986 76 999999999999998 6776666 6777777888888754
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=4.9e-15 Score=100.84 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=47.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcC----CCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 75 PDVRRGNITLQEQLMILELHSRWG----NRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
+.+++++||.+||.+|++++..|| ++|..||.+|||||..||++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456888999999999999999999 6899999999999999999999988653
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.53 E-value=7.4e-15 Score=101.48 Aligned_cols=51 Identities=27% Similarity=0.507 Sum_probs=47.9
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhc
Q 043269 20 AILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNY 72 (191)
Q Consensus 20 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~ 72 (191)
......+++||+|||++|+++|.+|| ++|..||++|+ +|+..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 46677899999999999999999999 59999999998 99999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=100.80 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=45.1
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHH
Q 043269 76 DVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTR 123 (191)
Q Consensus 76 ~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 123 (191)
...+++||+|||++|+++|.+||++|..||++|++||..||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999765
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.50 E-value=1.1e-14 Score=107.88 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=49.2
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhh----CCCCCHHHHHHHHHHHhH
Q 043269 73 LRPDVRRGNITLQEQLMILELHSRWGN-RWSKIAQY----LPGRTDNEIKNYWRTRVQ 125 (191)
Q Consensus 73 l~p~~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~ 125 (191)
+.+..++++||+|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 456678999999999999999999995 99999997 499999999999999998
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=4.6e-14 Score=92.32 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=46.2
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCCCHHHHh---hhCCCCCHHHHHHHHHHHhHH
Q 043269 77 VRRGNITLQEQLMILELHSRWGNRWSKIA---QYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 77 ~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia---~~l~gRt~~~~k~rw~~~l~k 126 (191)
-++.+||+|||+.|+++|++||.+|..|+ .+|++||..+||+||+++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36779999999999999999999999999 578999999999999998765
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.48 E-value=6.1e-14 Score=97.67 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHhcCC-CHHHHhhh----CCCCCHHHHHHHHHHHhHHH
Q 043269 80 GNITLQEQLMILELHSRWGN-RWSKIAQY----LPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 80 ~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~k~ 127 (191)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999995 99999995 89999999999999999753
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-15 Score=105.31 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=51.3
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCC
Q 043269 19 EAILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRP 75 (191)
Q Consensus 19 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p 75 (191)
.-.|++++|+||+|||++|+++|..||. +|..||..|+ +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3478999999999999999999999999 8999999998 99999999999998763
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=2e-14 Score=97.82 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=49.1
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 20 AILGVRKGPWTVEEDSLLMNYVAIHGE---GRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 20 ~~~~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
..+.+.+++||++||.+|.++|+.||. .+|.+||++|| |||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456789999999999999999999993 48999999998 9999999999998765
No 53
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.46 E-value=7.7e-14 Score=103.52 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=46.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhh----CCCCCHHHHHHHHHHHhH
Q 043269 75 PDVRRGNITLQEQLMILELHSRWGN-RWSKIAQY----LPGRTDNEIKNYWRTRVQ 125 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~ 125 (191)
...++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3457889999999999999999995 99999996 489999999999999995
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=1.9e-13 Score=98.99 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=47.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCC-CHHHHhhhC----CCCCHHHHHHHHHHHhHH
Q 043269 75 PDVRRGNITLQEQLMILELHSRWGN-RWSKIAQYL----PGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~~l~k 126 (191)
+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999995 999999965 899999999999999963
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.43 E-value=6.6e-14 Score=114.09 Aligned_cols=55 Identities=25% Similarity=0.506 Sum_probs=48.8
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCCC------HHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 75 PDVRRGNITLQEQLMILELHSRWGNR------WSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G~~------W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
+.+++++||+|||++|+++|.+||++ |..||++|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999975 99999999999999999999999999775
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.39 E-value=5.7e-13 Score=94.60 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=45.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC----CCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 78 RRGNITLQEQLMILELHSRWG----NRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.+++||.|||++|++++..|| ++|..||..|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987663
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=3.1e-12 Score=90.79 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CCChhhhhhhcCCCCCchhhhhhhhhcc
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHG---EGRWNAVASSAGLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~l~~~R~~~qc~~rw~~~l 73 (191)
..+++||+|||++|.++++.|| ..+|..||+.|| |||..||+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3468999999999999999998 347999999998 999999999998874
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.9e-11 Score=79.29 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHH
Q 043269 78 RRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTR 123 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 123 (191)
..++||+||++++++++.+||.+|..||.+||+||..+|.++|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=82.47 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred CchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhC-----CCCCHHHHHHHHHHHhHHHHhhc
Q 043269 61 TGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYL-----PGRTDNEIKNYWRTRVQKHAKQL 131 (191)
Q Consensus 61 ~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l-----~gRt~~~~k~rw~~~l~k~~~~~ 131 (191)
.+.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+...
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345577899999976 79999999999999999999999999998 58999999999999998876554
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.07 E-value=1e-10 Score=76.44 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhh---hhcCCCCCchhhhhhhhhccC
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVA---SSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~l~~~R~~~qc~~rw~~~l~ 74 (191)
.++.+||+|||+.|+++|.+||. +|..|+ ..++ +|+...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 47889999999999999999999 999999 4565 9999999999998754
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.07 E-value=2.2e-10 Score=77.49 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=44.8
Q ss_pred CCcCCCCCHHHHHHHHHHHHhcC----CCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 76 DVRRGNITLQEQLMILELHSRWG----NRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 76 ~~~~~~Wt~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..+.+.||.|||++|.+++.+|+ .+|..||.+| |||..+|++||+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 35678999999999999999997 5799999998 99999999999888554
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.04 E-value=2.8e-10 Score=91.99 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=45.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 78 RRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..++||+||+.++++++.+||++|..||+.|++||..||+++|.++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999988765
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=75.00 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhcc
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l 73 (191)
...++||+||++++.+++..||. +|..||..|+ +|+..||..+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 45688999999999999999997 9999999998 999999999987653
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.88 E-value=1.4e-09 Score=97.01 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 80 GNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 80 ~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..||+||..++++++.+||.+|..||+.+..||..||+++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999765443
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=1.3e-09 Score=73.73 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 23 GVRKGPWTVEEDSLLMNYVAIHGE---GRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 23 ~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
+...+.||.|||++|.+++++|+. ++|..||+.| +|+..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 456789999999999999999984 4699999998 5999999999987654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=6.4e-09 Score=70.30 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC----CHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 78 RRGNITLQEQLMILELHSRWGN----RWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
....||.+|+++|.+++..|+. +|..||..+||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3458999999999999999984 699999999999999999999877543
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=5.5e-09 Score=70.61 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 26 KGPWTVEEDSLLMNYVAIHGE---GRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 26 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
...||.+|+++|.++++.|+. ++|..||..|| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 356999999999999999986 47999999998 9999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.74 E-value=5.6e-09 Score=67.89 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhh-hcCCCCCchhhhhhhhhccC
Q 043269 26 KGPWTVEEDSLLMNYVAIH--------GEGRWNAVAS-SAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 26 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~l~~~R~~~qc~~rw~~~l~ 74 (191)
+.+||+|||..|+++|..| |..-|..+++ .++ +++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4446999999 786 9999999999999874
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.68 E-value=1.3e-08 Score=82.33 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
...++||+||+.++++++.+||. +|..||+.|+ +||..||+.+|+++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999998 8999999998 9999999999998764
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.67 E-value=2.1e-08 Score=65.17 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CC-CHHHHhh-hCCCCCHHHHHHHHHHHhH
Q 043269 79 RGNITLQEQLMILELHSRW--------GN-RWSKIAQ-YLPGRTDNEIKNYWRTRVQ 125 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~--------G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~ 125 (191)
+.+||+|||..|++.|..| |+ -|.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4589999999999999999 43 4999999 8999999999999987663
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.9e-07 Score=60.42 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=43.9
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhh-hCCCCCHHHHHHHHHH
Q 043269 75 PDVRRGNITLQEQLMILELHSRWGNRWSKIAQ-YLPGRTDNEIKNYWRT 122 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~ 122 (191)
|.+....||+||-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 5999999999988753
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.46 E-value=7.5e-07 Score=75.34 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhh-------hhhhc---------------------------
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRL-------RWLNY--------------------------- 72 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~-------rw~~~--------------------------- 72 (191)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999998 899877753 22100
Q ss_pred -------------c---CCCCcCCCCCHHHHHHHHHHHHhcCC----CHHHHhh------------hCCCCCHHHHHHHH
Q 043269 73 -------------L---RPDVRRGNITLQEQLMILELHSRWGN----RWSKIAQ------------YLPGRTDNEIKNYW 120 (191)
Q Consensus 73 -------------l---~p~~~~~~Wt~eEd~~L~~~v~~~G~----~W~~Ia~------------~l~gRt~~~~k~rw 120 (191)
| .+..+...||++||..|+-++.+||- .|..|.. ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234568999999999999999993 6999962 45789999999999
Q ss_pred HHHhHHHHhh
Q 043269 121 RTRVQKHAKQ 130 (191)
Q Consensus 121 ~~~l~k~~~~ 130 (191)
..+++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998765443
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.40 E-value=9.1e-07 Score=61.56 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---CHHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 043269 81 NITLQEQLMILELHSRWGN---RWSKIAQYLPGRTDNEIKNYWRTRVQKHA 128 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~---~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~ 128 (191)
-||.|||..||...++-|. .|..||+.|.+|+.+||++||..+++-.-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999986 79999999989999999999999987643
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.38 E-value=7.9e-08 Score=64.58 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhcCCCCCchhhhhhhhh
Q 043269 26 KGPWTVEEDSLLMNYVAIHGEG---RWNAVASSAGLNRTGKSCRLRWLN 71 (191)
Q Consensus 26 kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~~R~~~qc~~rw~~ 71 (191)
.+.||.+|+++|..+++.|+.+ .|.+||+.|| ||+..+|+.+|.-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4579999999999999999764 7999999998 9999999999853
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.35 E-value=8.5e-08 Score=64.42 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC----CHHHHhhhCCCCCHHHHHHHHH
Q 043269 78 RRGNITLQEQLMILELHSRWGN----RWSKIAQYLPGRTDNEIKNYWR 121 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~~k~rw~ 121 (191)
..+.||.+|+++|..++..|+. +|..||..|||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3458999999999999999984 7999999999999999998873
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=7.1e-07 Score=58.57 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=44.7
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcCCCCCchhhhhhhhhc
Q 043269 21 ILGVRKGPWTVEEDSLLMNYVAIHGEGRWNAVAS-SAGLNRTGKSCRLRWLNY 72 (191)
Q Consensus 21 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~R~~~qc~~rw~~~ 72 (191)
.|.+....||+||-+++.+++.+||. +|..|++ .|+ +|+..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 46788889999999999999999999 8999998 587 99999998877543
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.29 E-value=3.2e-06 Score=59.43 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=52.2
Q ss_pred hhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCC-----CCCHHHHHHHHHHHhHHHHhhcC
Q 043269 67 LRWLNYLRPDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLP-----GRTDNEIKNYWRTRVQKHAKQLK 132 (191)
Q Consensus 67 ~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~-----gRt~~~~k~rw~~~l~k~~~~~~ 132 (191)
+.|..+|.. ..||.||...|++|++.|.-+|..|+..+. .||-.++|.||..+.++.++...
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 455556643 589999999999999999999999999763 79999999999999988765543
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.57 E-value=1.3e-07 Score=62.46 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---CHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 81 NITLQEQLMILELHSRWGN---RWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~---~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
-||.|||..|+..+++-|. .|..||..| +|+++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 799999999 99999999999998765
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.11 E-value=5.5e-06 Score=55.41 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHhh-hCCCCCHHHHHHHHH
Q 043269 79 RGNITLQEQLMILELHSRWGNRWSKIAQ-YLPGRTDNEIKNYWR 121 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~~k~rw~ 121 (191)
...||+||..+..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 699999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.10 E-value=5.4e-06 Score=58.59 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHH
Q 043269 79 RGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRT 122 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 122 (191)
...||+||..++.+++..||.+|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998753
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.97 E-value=5e-06 Score=74.16 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhcc
Q 043269 25 RKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l 73 (191)
...+||.+|..++++++.+||. +|..||..|+ +|+..||+.+|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999998 9999999998 999999999987754
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.94 E-value=8.3e-06 Score=57.41 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC----CCCCchhhhhhhhhcc
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAG----LNRTGKSCRLRWLNYL 73 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~R~~~qc~~rw~~~l 73 (191)
+..++||.||++.|.+|+.+|+- .|..|+..+. .+|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999999 8999999982 2799999999998764
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.94 E-value=5.5e-06 Score=58.55 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhh
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLN 71 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~ 71 (191)
.....||+||.+++.+++..||. +|..||..|+ +|+..+|...|..
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 45677999999999999999998 8999999998 9999999987754
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.91 E-value=1.1e-05 Score=53.97 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcCCCCCchhhhhhhhhc
Q 043269 25 RKGPWTVEEDSLLMNYVAIHGEGRWNAVAS-SAGLNRTGKSCRLRWLNY 72 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~R~~~qc~~rw~~~ 72 (191)
....||+||-+++.+++..||. +|..|++ .|+ +|+..+|...|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence 3457999999999999999999 8999999 598 99999999877643
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.71 E-value=3.9e-05 Score=52.92 Aligned_cols=49 Identities=12% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----------CHHHHhhhC----CCCCHHHHHHHHHHHhHHH
Q 043269 79 RGNITLQEQLMILELHSRWGN----------RWSKIAQYL----PGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~----------~W~~Ia~~l----~gRt~~~~k~rw~~~l~k~ 127 (191)
...||.+|...||+++..+.. .|..||..| -.||+.||+++|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 458999999999999976321 599999976 3799999999999987763
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.55 E-value=0.00012 Score=58.20 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=67.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCChhhhhhh--cCCCCCchhhhhhhhhc-------c--------------------
Q 043269 25 RKGPWTVEEDSLLMNYVAIHG--EGRWNAVASS--AGLNRTGKSCRLRWLNY-------L-------------------- 73 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--l~~~R~~~qc~~rw~~~-------l-------------------- 73 (191)
.-..||..|-..|+.++.+|| .+.|..|+.. |. +++...+..-+..+ +
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 446799999999999999999 5689999854 43 56644433210000 0
Q ss_pred ----------------------------------------C----CCCcCCCCCHHHHHHHHHHHHhcC-CCHHHHhh--
Q 043269 74 ----------------------------------------R----PDVRRGNITLQEQLMILELHSRWG-NRWSKIAQ-- 106 (191)
Q Consensus 74 ----------------------------------------~----p~~~~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~-- 106 (191)
. +......||++||..|+..+.+|| ++|..|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 0 001123599999999999999999 99999944
Q ss_pred h--C----------CCCCHHHHHHHHHHHhHH
Q 043269 107 Y--L----------PGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 107 ~--l----------~gRt~~~~k~rw~~~l~k 126 (191)
. | ..+++..+..|-..+|+-
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 2 1 124456788887666654
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.51 E-value=0.00088 Score=57.94 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhc----------------------------------
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNY---------------------------------- 72 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~---------------------------------- 72 (191)
+.||..+=..++.++.+||..+-..||..|+.+++...++. |...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888899999999999899999999954677766652 2111
Q ss_pred --------------c----CCC-CcCCCCCHHHHHHHHHHHHhcC----CCHHHHhh------------hCCCCCHHHHH
Q 043269 73 --------------L----RPD-VRRGNITLQEQLMILELHSRWG----NRWSKIAQ------------YLPGRTDNEIK 117 (191)
Q Consensus 73 --------------l----~p~-~~~~~Wt~eEd~~L~~~v~~~G----~~W~~Ia~------------~l~gRt~~~~k 117 (191)
| .+. .+...||++||..||-++.+|| +.|..|-. +|..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 011 1345799999999999999998 46999933 25789999999
Q ss_pred HHHHHHhHHHHhhcC
Q 043269 118 NYWRTRVQKHAKQLK 132 (191)
Q Consensus 118 ~rw~~~l~k~~~~~~ 132 (191)
.|-..+++-..+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999987766644
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.49 E-value=0.00016 Score=50.30 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=47.6
Q ss_pred CccccchHhhhcCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhcCCCCCchhhhhhhhhcc
Q 043269 11 GNHRQQSEEAILGVRKGPWTVEEDSLLMNYVAIHGE--GRWNAVASSAGLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~kg~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~R~~~qc~~rw~~~l 73 (191)
+-|.+.-.-...+-+=-.||.|||..|+...++.|. ..|..||+.|+ +|++.|+.+||+..+
T Consensus 18 s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 18 TVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred ceeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 444443333333444455999999999999999875 47999999998 999999999997743
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.42 E-value=4.2e-05 Score=52.76 Aligned_cols=49 Identities=24% Similarity=0.559 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CChhhhhhhc---CCCCCchhhhhhhhhcc
Q 043269 25 RKGPWTVEEDSLLMNYVAIHGE---------GRWNAVASSA---GLNRTGKSCRLRWLNYL 73 (191)
Q Consensus 25 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l---~~~R~~~qc~~rw~~~l 73 (191)
+...||.+|-..|+++...... .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4577999999999999876322 1599999776 35799999999998864
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.10 E-value=9.3e-05 Score=48.76 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 27 GPWTVEEDSLLMNYVAIHGE--GRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
-.||.|||..|+..+++-|. ..|..||..| +|++.|+..||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999998886 3699999888 6999999999988654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.45 E-value=0.0036 Score=43.76 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC----CCCCchhhhhhhhhcc
Q 043269 24 VRKGPWTVEEDSLLMNYVAIHGEGRWNAVASSAG----LNRTGKSCRLRWLNYL 73 (191)
Q Consensus 24 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~R~~~qc~~rw~~~l 73 (191)
+....||.||...|.+|+.+|+- .|.-|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999998 8999997763 2689999999998763
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.22 E-value=0.024 Score=36.89 Aligned_cols=47 Identities=15% Similarity=0.009 Sum_probs=39.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCC---HHHHhhhC--CCCCHHHHHHHHHHHh
Q 043269 78 RRGNITLQEQLMILELHSRWGNR---WSKIAQYL--PGRTDNEIKNYWRTRV 124 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~~~l 124 (191)
.+-.||+|..+.++++|.++|.. +..|.+.| +|.|..+|+.|...+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999964 78998876 7899999998876553
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.56 E-value=0.025 Score=47.69 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 79 RGNITLQEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
-+.||..+...++.+..+|| .+|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999 6899999999999999998877666554
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.81 E-value=0.02 Score=47.46 Aligned_cols=27 Identities=37% Similarity=0.601 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhh
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVA 53 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia 53 (191)
..|+.+||..|+..|-+||.|+|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 359999999999999999999999996
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.62 E-value=0.064 Score=34.85 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--ChhhhhhhcC-CCCCchhhhhhhhhc
Q 043269 23 GVRKGPWTVEEDSLLMNYVAIHGEG--RWNAVASSAG-LNRTGKSCRLRWLNY 72 (191)
Q Consensus 23 ~~~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l~-~~R~~~qc~~rw~~~ 72 (191)
...+-.||+|..+.+.++|...|.. .+..|.+.|+ .+.|..++..+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456779999999999999999953 2788988876 256888888776655
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.48 E-value=0.072 Score=41.92 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=41.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcC---CCHHHHhh--hCCCCCHHHHHHHHHHHhHH
Q 043269 78 RRGNITLQEQLMILELHSRWG---NRWSKIAQ--YLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G---~~W~~Ia~--~l~gRt~~~~k~rw~~~l~k 126 (191)
....||+.|-..|+.++..|| .+|..|+. .|.++|...|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999 58999987 47899999999977776654
No 97
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=90.67 E-value=1.9 Score=30.33 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH----------HHHHHhHHHHhhcCCCCCchHHHHhhhhccccchHHHHh
Q 043269 88 LMILELHSRWGNRWSKIAQYLPGRTDNEIKN----------YWRTRVQKHAKQLKCDVNSKQFRDAMRFVWVPRLIERIQ 157 (191)
Q Consensus 88 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~----------rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (191)
..|..+....|..|..+|+.| |=+..+|.. +-..+|..-..+.+....-..+..++...-...+...+.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~~dvae~l~ 97 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLT 97 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCcHHHHHHHH
Confidence 345566677799999999999 877777754 112333332233223344456666666655566667777
Q ss_pred hccCCCCCC
Q 043269 158 AQSDSNSSG 166 (191)
Q Consensus 158 ~~~~s~ss~ 166 (191)
....++|++
T Consensus 98 ~~~~~~~~~ 106 (110)
T 1wxp_A 98 NDNETNSSG 106 (110)
T ss_dssp CCCSSCSCC
T ss_pred HHhhccCCC
Confidence 766665555
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.13 E-value=0.97 Score=37.30 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CCHHHHhh--hCCCCCHHHHHHHHHHHhHH
Q 043269 79 RGNITLQEQLMILELHSRWG---NRWSKIAQ--YLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G---~~W~~Ia~--~l~gRt~~~~k~rw~~~l~k 126 (191)
+++||+.|-..|+..+.+|| .+|..|+. .|+.++...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 58899999999988877754
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=80.76 E-value=1.4 Score=31.96 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=33.7
Q ss_pred CChhhhhhhcCCCCCc----hhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHH
Q 043269 47 GRWNAVASSAGLNRTG----KSCRLRWLNYLRPDVRRGNITLQEQLMILELHS 95 (191)
Q Consensus 47 ~~W~~Ia~~l~~~R~~----~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~ 95 (191)
+.|.+||..|++..+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3699999999754432 456888999887632 378888888877664
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=77.01 E-value=2.3 Score=30.35 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHhcCC--------CHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 90 ILELHSRWGN--------RWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
|..+|..+|+ .|.+||..|.--.+..++..|..+|-+.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7778888876 7999999874334789999999998774
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=76.77 E-value=5.2 Score=27.80 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHHHHhcCC--------CHHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 043269 89 MILELHSRWGN--------RWSKIAQYLPGRT----DNEIKNYWRTRVQKH 127 (191)
Q Consensus 89 ~L~~~v~~~G~--------~W~~Ia~~l~gRt----~~~~k~rw~~~l~k~ 127 (191)
.|..+|...|+ .|.+||..|.--. ..+++..|..+|-+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 37777777775 7999999883222 468899998888764
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=76.33 E-value=1.5 Score=31.29 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCCchhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRTGKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p 75 (191)
.|..+|...|. +.|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 36677777664 37999999998433 77888888888865
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=75.81 E-value=4.7 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHhcCC--------CHHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 043269 89 MILELHSRWGN--------RWSKIAQYLPGRT----DNEIKNYWRTRVQKH 127 (191)
Q Consensus 89 ~L~~~v~~~G~--------~W~~Ia~~l~gRt----~~~~k~rw~~~l~k~ 127 (191)
.|..+|..+|+ .|.+|+..|.--. ...++..|..+|.+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37778888886 7999999882222 568899999988774
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=74.88 E-value=6.1 Score=33.98 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHhhhCC-CCCHHHHHHHHHHHhHH
Q 043269 79 RGNITLQEQLMILELHSRWG-NRWSKIAQYLP-GRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~k 126 (191)
-+.||.-+=..++.+..+|| .+-..||..|. |+|..+|+.+......+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 67999999997 99999999665544443
No 105
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=74.37 E-value=8.2 Score=23.65 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 82 ITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 82 Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.++ .+..++.++-..|-.+.+||..+ |-+...|+.+....+++.
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 444 44455566667788999999999 899999998877665553
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=74.28 E-value=3.4 Score=29.89 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHhcCC--------CHHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 90 ILELHSRWGN--------RWSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
|..+|...|+ .|.+|+..|.--....++..|..+|-+.-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6777777775 699999987333489999999999988644
No 107
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=72.72 E-value=3.2 Score=31.68 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.5
Q ss_pred cCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 043269 22 LGVRKGPWTVEEDSLLM--------NYVAIHGE 46 (191)
Q Consensus 22 ~~~~kg~WT~eED~~L~--------~~v~~~g~ 46 (191)
|.-..|-||+|+|+.|. .++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 56789999999998876 67777874
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.67 E-value=7.2 Score=24.61 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHh----cCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 82 ITLQEQLMILELHSR----WGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 82 Wt~eEd~~L~~~v~~----~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
.++.|-+.| .+.-. .|-.+.+||..| |-+...|+.+....+++.
T Consensus 11 L~~~er~il-~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREAMVL-KMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHHHHH-HHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445555444 44443 577899999999 999999998877666553
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=72.42 E-value=6.5 Score=28.24 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHhcCC--------CHHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 043269 90 ILELHSRWGN--------RWSKIAQYLPGRT----DNEIKNYWRTRVQKH 127 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~gRt----~~~~k~rw~~~l~k~ 127 (191)
|..+|..+|+ .|.+|+..|.--+ ...+|..|..+|.+.
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 7777777776 7999999872222 468889998888774
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.32 E-value=6.7 Score=28.10 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHhcCC--------CHHHHhhhCCCC--C--HHHHHHHHHHHhHHH
Q 043269 90 ILELHSRWGN--------RWSKIAQYLPGR--T--DNEIKNYWRTRVQKH 127 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~gR--t--~~~~k~rw~~~l~k~ 127 (191)
|..+|..+|+ .|.+|+..|.-- + ...+|..|..+|-+.
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7777777776 799999988222 1 368888898888774
No 111
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=71.28 E-value=2.7 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC----chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT----GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~----~~qc~~rw~~~l~p 75 (191)
.|..+|...|. +.|.+||..|+...+ ..+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666776653 379999999984332 35678888888875
No 112
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=70.73 E-value=2.4 Score=30.26 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC---chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT---GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~---~~qc~~rw~~~l~p 75 (191)
.|..+|.+.|. +.|.+||..|+...+ ..+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777764 369999999985432 34567778877754
No 113
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=68.98 E-value=2.7 Score=30.48 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC----chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT----GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~----~~qc~~rw~~~l~p 75 (191)
.|..+|...|. +.|..||..|+...+ ..+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35666776664 369999999985443 35667788888765
No 114
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=68.39 E-value=8.3 Score=23.93 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHH----hcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 83 TLQEQLMILELHS----RWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 83 t~eEd~~L~~~v~----~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
++.|- .++.+.- ..|-.+.+||..| |-+...|+.+....+++
T Consensus 7 ~~~er-~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 7 TAREA-KVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp CHHHH-HHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444 4444443 3467899999999 99999999887766655
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=66.09 E-value=18 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHhcCC--------CHHHHhhhC--CCC---CHHHHHHHHHHHhHHHHh
Q 043269 90 ILELHSRWGN--------RWSKIAQYL--PGR---TDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l--~gR---t~~~~k~rw~~~l~k~~~ 129 (191)
|..+|...|+ .|.+|+..| +.. ....++..|..+|-+.-.
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 7777777876 799999987 222 257899999999987533
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=66.06 E-value=3.3 Score=29.89 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC---chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT---GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~---~~qc~~rw~~~l~p 75 (191)
.|..+|.+.|. +.|.+||..|+...+ ..+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666766664 379999999985442 34667777777753
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=64.79 E-value=12 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHhcCC--------CHHHHhhhC--CCC---CHHHHHHHHHHHhHHH
Q 043269 89 MILELHSRWGN--------RWSKIAQYL--PGR---TDNEIKNYWRTRVQKH 127 (191)
Q Consensus 89 ~L~~~v~~~G~--------~W~~Ia~~l--~gR---t~~~~k~rw~~~l~k~ 127 (191)
.|..+|..+|+ .|.+|+..| +.. ....+|..|..+|.+.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888886 799999987 222 2578999999999875
No 118
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=64.76 E-value=4.6 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHhcCC--------CHHHHhhhCCCC----CHHHHHHHHHHHhHHH
Q 043269 90 ILELHSRWGN--------RWSKIAQYLPGR----TDNEIKNYWRTRVQKH 127 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~gR----t~~~~k~rw~~~l~k~ 127 (191)
|..+|...|+ .|.+|+..|.-- ...+++..|..+|.+.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 6777777765 799999987221 2568888888777653
No 119
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=63.88 E-value=3.4 Score=28.81 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC---chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT---GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~---~~qc~~rw~~~l~p 75 (191)
.|..+|.+.|. +.|.+||..|+...+ ..+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777764 369999999984432 35567777777643
No 120
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.79 E-value=3.9 Score=29.42 Aligned_cols=40 Identities=28% Similarity=0.485 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC---chhhhhhhhhccCC
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT---GKSCRLRWLNYLRP 75 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~---~~qc~~rw~~~l~p 75 (191)
.|..+|.+.|. +.|.+|+..|+...+ ..+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777764 379999999985432 24566777777643
No 121
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=63.43 E-value=16 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 84 LQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 84 ~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
.+|-..|+. ....|.+|..+|+.| |=+...|..
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~ 37 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVET 37 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHH
Confidence 466677888 366689999999999 888877765
No 122
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=62.45 E-value=12 Score=26.89 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=49.3
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHHHHHhcCC--
Q 043269 24 VRKGPWTVEED--SLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILELHSRWGN-- 99 (191)
Q Consensus 24 ~~kg~WT~eED--~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~G~-- 99 (191)
.=+..|.+.+. +.|..++...|. ....|+. ++ +|.- | + -.|..+|..+|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~l-----------D--L----------~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCEL-----------D--L----------ACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEEC-----------C--H----------HHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEec-----------c--H----------HHHHHHHHHcCcHH
Confidence 33557888776 456666677776 3433332 22 2222 1 1 237778888886
Q ss_pred ------CHHHHhhhC--CCC---CHHHHHHHHHHHhHHH
Q 043269 100 ------RWSKIAQYL--PGR---TDNEIKNYWRTRVQKH 127 (191)
Q Consensus 100 ------~W~~Ia~~l--~gR---t~~~~k~rw~~~l~k~ 127 (191)
.|.+||..| |.- ....++..|..+|-+.
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 799999987 321 2468899999888875
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=60.90 E-value=13 Score=27.36 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=34.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcCCCCC----chhhhhhhhhccCC--CCcCCCCCHHHHHHH
Q 043269 36 LLMNYVAIHGE-------GRWNAVASSAGLNRT----GKSCRLRWLNYLRP--DVRRGNITLQEQLMI 90 (191)
Q Consensus 36 ~L~~~v~~~g~-------~~W~~Ia~~l~~~R~----~~qc~~rw~~~l~p--~~~~~~Wt~eEd~~L 90 (191)
.|..+|.+.|. +.|.+||..|++..+ ..+++..|.++|.| ...+|.=.++|-+.-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~ 135 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAA 135 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 35555666654 369999999985432 35678888888876 234455445554443
No 124
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.84 E-value=24 Score=23.15 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 86 EQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 86 Ed~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
.+..++.++-..|-.-.+||..| |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44455566666777889999999 99999999987776655
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=58.21 E-value=29 Score=23.01 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=35.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 78 RRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 78 ~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
.....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34468888888776554 677889999999 99999999888777665
No 126
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=57.04 E-value=14 Score=26.06 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 87 QLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 87 d~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3457778888999999999999 878776644
No 127
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=55.87 E-value=6.6 Score=27.33 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHHHhcCC--------CHHHHhhhCC--CC---CHHHHHHHHHHHhHHH
Q 043269 90 ILELHSRWGN--------RWSKIAQYLP--GR---TDNEIKNYWRTRVQKH 127 (191)
Q Consensus 90 L~~~v~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~k~ 127 (191)
|..+|..+|+ .|.+||..|. .. ...+++..|..+|.+.
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6677777775 7999999872 11 2367899998888763
No 128
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=55.70 E-value=34 Score=21.29 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 82 ITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 82 Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456555555 445 5677889999999 88999998877666554
No 129
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=54.75 E-value=17 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 79 RGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
...=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344444 35566788999999999999 777776643
No 130
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=54.29 E-value=16 Score=25.76 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=27.6
Q ss_pred CCCcCCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 75 PDVRRGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 75 p~~~~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
+.+-...=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33334444555 35566788999999999999 878777644
No 131
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=53.25 E-value=28 Score=21.36 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 84 LQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 84 ~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
.-|.+.|.++...++++..+.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477888899999999999999988 666655433
No 132
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=53.17 E-value=11 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.8
Q ss_pred hhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHH
Q 043269 49 WNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILE 92 (191)
Q Consensus 49 W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~ 92 (191)
=..||..+. |+++.+||..+ ++.. .+|+||++.|.+
T Consensus 118 c~~vA~~ik-gkt~eeir~~f------~I~n-d~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIK-GKTPEEIRTTF------NIKN-DFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTT-TCCHHHHHHHT------TCCC-CCCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHc------CCCC-CCCHHHHHHHHH
Confidence 367889997 99999998865 2332 599999988764
No 133
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=52.19 E-value=2.4 Score=30.71 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.6
Q ss_pred HHHHHHHhCC-------CChhhhhhhcCCCCCchhhhhhhhhccCC
Q 043269 37 LMNYVAIHGE-------GRWNAVASSAGLNRTGKSCRLRWLNYLRP 75 (191)
Q Consensus 37 L~~~v~~~g~-------~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p 75 (191)
|..+|.+.|. +.|.+||..|++.. ....+..|.++|.|
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 5555555543 35999999998433 66777777777653
No 134
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.51 E-value=32 Score=25.07 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=24.9
Q ss_pred hcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 96 RWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 96 ~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
..|-...+||..| |-+...|+.+....+++.
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3466899999999 999999999877766553
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.41 E-value=35 Score=21.96 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 477777766654 4 5677889999999 89999998877666554
No 136
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.91 E-value=36 Score=22.55 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777766654 4 6777889999999 89999999887766655
No 137
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.81 E-value=31 Score=22.38 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHh----cCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 83 TLQEQLMILELHSR----WGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 83 t~eEd~~L~~~v~~----~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
++.|- .++.+.-. .|-.+.+||..| |-+...|+.+-...+++
T Consensus 20 ~~~er-~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 20 SPREA-MVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp CHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444 44444443 567899999999 99999998876665554
No 138
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=49.54 E-value=21 Score=26.17 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 85 QEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 85 eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
+-|..|+.+....| -.+.+||+.+ |=+...|+.|++.+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888777 5799999999 999999999999998876544
No 139
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=45.44 E-value=42 Score=22.18 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHH
Q 043269 84 LQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNY 119 (191)
Q Consensus 84 ~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~r 119 (191)
.-|...|.+++..++++-.+.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999998 7777666443
No 140
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.83 E-value=51 Score=20.02 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 80 GNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 80 ~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
...|+.|-+.|.. + ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777776655 4 5677889999999 88999998887766554
No 141
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=43.80 E-value=76 Score=21.78 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHH---H--------HHHhHHHHhhcCCCCCchHHHHhhhhccccc
Q 043269 83 TLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNY---W--------RTRVQKHAKQLKCDVNSKQFRDAMRFVWVPR 151 (191)
Q Consensus 83 t~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~r---w--------~~~l~k~~~~~~~~~~~~~~~~~~~~~~~p~ 151 (191)
++.-+..|..+....|..|..+|+.| |=+..+|..- + ..+|..-..+.+....-..+..++...-...
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~d 92 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGE 92 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcHH
Confidence 56667788888899999999999999 8888766441 1 2223222233233334455555555444444
Q ss_pred hHHHHhh
Q 043269 152 LIERIQA 158 (191)
Q Consensus 152 ~~~~~~~ 158 (191)
+...+..
T Consensus 93 iae~l~~ 99 (111)
T 2yqf_A 93 IVNMLEG 99 (111)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 4444443
No 142
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.52 E-value=47 Score=19.48 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 88 LMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 88 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..++.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3444553 5576778999999 99999999887766655
No 143
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=43.32 E-value=50 Score=22.78 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 82 ITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 82 Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
.++. +..++.++-..|-.-.+||..| |-+...|+.+....+++
T Consensus 26 L~~~-~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 26 LTNK-QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp SCHH-HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3443 4445566666788899999999 99999999887766554
No 144
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=40.63 E-value=18 Score=27.26 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.4
Q ss_pred hhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHH
Q 043269 49 WNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMIL 91 (191)
Q Consensus 49 W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~ 91 (191)
-..||..+. |+++.++|..| ++.. .||+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f------~I~n-d~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTF------NIVN-DFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHH------TCCC-CCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHc------CCCC-CCCHHHHHHHH
Confidence 468889897 99999998866 2332 59999999874
No 145
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=40.07 E-value=21 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=24.3
Q ss_pred hcCCCHHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 043269 96 RWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 127 (191)
Q Consensus 96 ~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~ 127 (191)
..|-...+||..| |-+...|+++....+++.
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3466788999999 889999998887766553
No 146
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.81 E-value=84 Score=21.13 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 79 RGNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 79 ~~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4568888888775543 677789999999 88999998877766555
No 147
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=39.46 E-value=61 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 85 QEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 85 eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34556777777766 5899999999 88999999999988876543
No 148
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.63 E-value=54 Score=22.82 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=24.5
Q ss_pred hcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 96 RWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 96 ~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..|-...+||..| |-+...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4566899999999 99999999887766555
No 149
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.26 E-value=46 Score=21.64 Aligned_cols=43 Identities=21% Similarity=0.061 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456666666544 4 5677778999999 99999998877666554
No 150
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.25 E-value=30 Score=26.26 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=19.3
Q ss_pred hhhhhhhhccC-CCCcCCCCCHHHHHHHH
Q 043269 64 SCRLRWLNYLR-PDVRRGNITLQEQLMIL 91 (191)
Q Consensus 64 qc~~rw~~~l~-p~~~~~~Wt~eEd~~L~ 91 (191)
.+-+.|..-.. |....|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34444444444 56788999999999885
No 151
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=37.51 E-value=18 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.3
Q ss_pred hhhhhhhcCCCCCchhhhhhhhhccCCCCcCCCCCHHHHHHHHH
Q 043269 49 WNAVASSAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLMILE 92 (191)
Q Consensus 49 W~~Ia~~l~~~R~~~qc~~rw~~~l~p~~~~~~Wt~eEd~~L~~ 92 (191)
=..||..+. |+++.++|..|. +. ..+|+||++.+.+
T Consensus 119 c~~va~~i~-gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 119 CKTVANMIK-GKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHS-SCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 357888897 999999998762 32 2589999988754
No 152
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.28 E-value=66 Score=24.05 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 88 LMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 88 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..++.++-..|-...+||..| |-+...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 333444444567899999999 99999998887666554
No 153
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.02 E-value=51 Score=24.41 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 85 QEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 85 eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
+-|..|+.+....| -.+.+||+.+ |-+...|..+.+.+....+-+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45666777777766 5799999999 899999999999888776543
No 154
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=34.64 E-value=18 Score=24.05 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 84 LQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 84 ~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
.+|-..|++ |++|..+|..| |=+...|..
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHH
Confidence 455566665 99999999999 777766644
No 155
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=34.29 E-value=69 Score=22.77 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 86 EQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 86 Ed~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
-|..|+.+....| -.+.+||+.+ |-+...|..+.+.+....+-+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 3556777777766 5899999999 899999999999988776543
No 156
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=34.29 E-value=54 Score=21.59 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 83 TLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 83 t~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
..-|.+.|.+++..++++..+.|+.| |=+...+..
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 34567788899999999999999988 766665543
No 157
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.90 E-value=1.3e+02 Score=21.09 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhc------cCCCCc----CCCCCHHHHHHHHHHHH
Q 043269 26 KGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNY------LRPDVR----RGNITLQEQLMILELHS 95 (191)
Q Consensus 26 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~------l~p~~~----~~~Wt~eEd~~L~~~v~ 95 (191)
....|.++-..++.++. .|. .-..||+.++ .+...+ .+|... +.+... ....++++...|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689999888888884 565 7899999997 444333 334332 222211 23478888888888886
Q ss_pred hcC
Q 043269 96 RWG 98 (191)
Q Consensus 96 ~~G 98 (191)
..+
T Consensus 105 ~~~ 107 (149)
T 1k78_A 105 QNP 107 (149)
T ss_dssp HCT
T ss_pred hCc
Confidence 643
No 158
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.78 E-value=1.3e+02 Score=21.32 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhcc------CCCCc----CCCCCHHHHHHHHHHHHh
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL------RPDVR----RGNITLQEQLMILELHSR 96 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l------~p~~~----~~~Wt~eEd~~L~~~v~~ 96 (191)
...|.++-..++.++. .|. ....||+.++ .+...+ .+|.+.. .+... ....++++.+.|++++..
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689998888888884 565 7899999997 444433 3454432 12111 234777777788777765
Q ss_pred c
Q 043269 97 W 97 (191)
Q Consensus 97 ~ 97 (191)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.93 E-value=85 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 82 ITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 82 Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
+++.+- .++.++-..|-.-.+||..+ |-+...|+.+....+++
T Consensus 23 L~~~~r-~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDKQM-NYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHHHH-HHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554 44555556788889999999 99999999887766654
No 160
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=31.40 E-value=27 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 87 QLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 87 d~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
+..+..++...|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 14 QVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3445556677889999999999 888777644
No 161
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.54 E-value=27 Score=25.57 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 32 EEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 32 eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
+-|..|+.+++..|.-.+.+||+.++ =+...|+.|..+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 45778888888888878999999996 677888887776643
No 162
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.00 E-value=1.1e+02 Score=21.72 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 86 EQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 86 Ed~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCc
Confidence 3556777777766 5799999999 88999999999988877543
No 163
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=26.66 E-value=76 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=18.0
Q ss_pred HHHhcCCCHHHHhhhCCCCCHHHHH
Q 043269 93 LHSRWGNRWSKIAQYLPGRTDNEIK 117 (191)
Q Consensus 93 ~v~~~G~~W~~Ia~~l~gRt~~~~k 117 (191)
+....|..|..+|+.| |=+..+|.
T Consensus 12 Ia~~lG~~Wk~LAR~L-Glse~dId 35 (122)
T 3ezq_B 12 ICDNVGKDWRRLARQL-KVSDTKID 35 (122)
T ss_dssp HHTTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHhhhhhHHHHHHHh-CCCHHHHH
Confidence 4456788999999998 77766554
No 164
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=26.22 E-value=54 Score=22.12 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCCC-------CcCCCCCHHHHHHHH
Q 043269 34 DSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRPD-------VRRGNITLQEQLMIL 91 (191)
Q Consensus 34 D~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p~-------~~~~~Wt~eEd~~L~ 91 (191)
+.+|.++|+.|| |..++..+. -| |+. .+|+ +++.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-I~----CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-IN----CFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-SS----STT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-cc----cCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 467899999997 999998886 23 221 2444 356789888777763
No 165
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.22 E-value=1.1e+02 Score=20.58 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHH
Q 043269 84 LQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKN 118 (191)
Q Consensus 84 ~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (191)
.-|...|..++..+|++-.+.|+.| |=+...+..
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~L-GIsR~TL~r 90 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMM-GINRGTLRK 90 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 3477788889999999999999988 767665543
No 166
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.90 E-value=1e+02 Score=22.06 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 043269 86 EQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHA 128 (191)
Q Consensus 86 Ed~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~ 128 (191)
-|..|+.+....| -.+.+||+.+ |-+...|..+.+.+.+..+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4556667776666 5899999999 8899999999988877654
No 167
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.79 E-value=1.6e+02 Score=19.98 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccCC------CCcCCCCCHHHHHHHHHHHHhcCCC
Q 043269 27 GPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLRP------DVRRGNITLQEQLMILELHSRWGNR 100 (191)
Q Consensus 27 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~p------~~~~~~Wt~eEd~~L~~~v~~~G~~ 100 (191)
...|.++-..++.++. -|. .-..||+.++ .+...++ +|...... .......+++++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4578888888887774 454 6899999997 4444443 34333211 1122357888888888773322234
Q ss_pred HHHHhhhCCC--CCHHHHHHHH
Q 043269 101 WSKIAQYLPG--RTDNEIKNYW 120 (191)
Q Consensus 101 W~~Ia~~l~g--Rt~~~~k~rw 120 (191)
=.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 46788887 4 5666665443
No 168
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.44 E-value=1.1e+02 Score=21.03 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 87 QLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 87 d~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 556666766666 5799999999 89999999999988877554
No 169
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.64 E-value=1e+02 Score=21.65 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhh
Q 043269 86 EQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQ 130 (191)
Q Consensus 86 Ed~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~ 130 (191)
-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 3566777777666 5899999999 899999999999888775543
No 170
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.28 E-value=2e+02 Score=19.94 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHH
Q 043269 80 GNITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWR 121 (191)
Q Consensus 80 ~~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~ 121 (191)
...+.++-..++.++. -|..-.+||+.| |.+...|..-.+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 4688998888888884 577789999999 888877765433
No 171
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=22.16 E-value=1.3e+02 Score=21.99 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcC-CCHHHHhhhCCCCCHHHHHHHHHHHhHHHHh
Q 043269 85 QEQLMILELHSRWG-NRWSKIAQYLPGRTDNEIKNYWRTRVQKHAK 129 (191)
Q Consensus 85 eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~ 129 (191)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+....+-
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34556677776666 5799999999 99999999999988776543
No 172
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.06 E-value=1e+02 Score=16.42 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYW 120 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw 120 (191)
..++++-..++.++ .-|-...+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766676665 3477789999999 88887776543
No 173
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=21.79 E-value=1.4e+02 Score=24.62 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=57.9
Q ss_pred CCHHHHH-HHHHHHHHhCCCChhhhhhhcCCCCCchhh---hhhhhhccCCCCc-------CC-----------CCCHHH
Q 043269 29 WTVEEDS-LLMNYVAIHGEGRWNAVASSAGLNRTGKSC---RLRWLNYLRPDVR-------RG-----------NITLQE 86 (191)
Q Consensus 29 WT~eED~-~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc---~~rw~~~l~p~~~-------~~-----------~Wt~eE 86 (191)
|.++.|. .|.+++.-.|. +=..|-..+. +|+..|. +..|......++- .| +.-+.+
T Consensus 21 f~~~~DA~~L~kA~kG~Gt-dE~~lieIL~-~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~D 98 (327)
T 1w3w_A 21 FNPDPDAETLYKAMKGIGT-NEQAIIDVLT-KRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYE 98 (327)
T ss_dssp CCCHHHHHHHHHHHSSSSC-CHHHHHHHHT-TSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-CHHHHHHHHh-cCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHH
Confidence 7777775 56678876776 5556666776 8998764 4556555443321 11 233555
Q ss_pred HHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHH
Q 043269 87 QLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTR 123 (191)
Q Consensus 87 d~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 123 (191)
-..|.++++..|.+=..+-..|-+|+..|++.-...+
T Consensus 99 A~~L~~A~~g~Gtde~~lieIL~tRs~~ql~~i~~~Y 135 (327)
T 1w3w_A 99 AKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAY 135 (327)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5666677776676645556667789998886644443
No 174
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=21.67 E-value=1.9e+02 Score=20.50 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCHHHHhhhCCCCCHHHHHHHHHHHhHHHHhhc
Q 043269 81 NITLQEQLMILELHSR-----WGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQL 131 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~-----~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k~~~~~ 131 (191)
.-|..|=..|+.+... .+..-..||..| |.+..+|...-..++++.+-..
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 4578888888888873 446789999999 9999999988888888765444
No 175
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=21.11 E-value=13 Score=18.86 Aligned_cols=17 Identities=47% Similarity=0.851 Sum_probs=11.1
Q ss_pred hhhhhhhhccCCCCcCCCCC
Q 043269 64 SCRLRWLNYLRPDVRRGNIT 83 (191)
Q Consensus 64 qc~~rw~~~l~p~~~~~~Wt 83 (191)
+.+.||-++| +.+|.||
T Consensus 4 slrsrwgrfl---lqrgswt 20 (26)
T 2lkq_A 4 SLRSRWGRFL---LQRGSWT 20 (26)
T ss_dssp TTTTHHHHHT---HHHHTCC
T ss_pred hHHHHHHHHH---HHcCCcc
Confidence 4567787776 4566665
No 176
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.02 E-value=78 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhhhhhhhccC
Q 043269 32 EEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYLR 74 (191)
Q Consensus 32 eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~~rw~~~l~ 74 (191)
+-|..|+.+++..+.-.+.+||+.++ -+...|+.|......
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 45667778888888778999999997 577778877666543
No 177
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.81 E-value=80 Score=20.49 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCCchhhh
Q 043269 29 WTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCR 66 (191)
Q Consensus 29 WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~R~~~qc~ 66 (191)
.|...++.+..+....|+..=-.||+.|| -|+.+++-
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VN 43 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVN 43 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcC
Confidence 45555677888888999988889999999 78888773
No 178
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=20.49 E-value=1.1e+02 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCHHHHhhhCCCCCHHHH
Q 043269 88 LMILELHSRWGNRWSKIAQYLPGRTDNEI 116 (191)
Q Consensus 88 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~ 116 (191)
+.|+.+-..-|-.|.+||+.+ |++..-+
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~v 43 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFV 43 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHH
Confidence 567777777888999999999 8998755
No 179
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.12 E-value=1.4e+02 Score=23.18 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHhhhCCCCCHHHHHHHHHHHhHH
Q 043269 81 NITLQEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 126 (191)
Q Consensus 81 ~Wt~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~k 126 (191)
..++.|-+.| .++ ..|-.-.+||..| |-+...|+.|-...+++
T Consensus 197 ~L~~~erevl-~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKEIL-RCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHHHH-HHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4666555554 445 4777889999999 99999999887766554
Done!