BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043271
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
           The Molybdenum Cofactor
 pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
           The Molybdenum Cofactor
 pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava
 pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
           Pseudoflava
          Length = 803

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 156 LLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVC 215
           L ED+    S   G R       TW +    +T          VS   +Y P+V PCP+ 
Sbjct: 157 LREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYY-PRVHPCPLE 215

Query: 216 SCGC 219
           +CGC
Sbjct: 216 TCGC 219


>pdb|1YUK|B Chain B, The Crystal Structure Of The PsiHYBRID DOMAIN I-Egf1
           Segment From The Human Integrin Beta2 At 1.8 Resolution
          Length = 120

 Score = 28.1 bits (61), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 213 PVCSCGCRDADKTTALCISQDIVHCSDHMC 242
           P C C CRD  +  +LC  +  + C    C
Sbjct: 79  PQCECRCRDQSRDRSLCHGKGFLECGICRC 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,019,154
Number of Sequences: 62578
Number of extensions: 555852
Number of successful extensions: 833
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 6
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)