Query 043274
Match_columns 226
No_of_seqs 118 out of 1053
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02433 Nodulin-21_like_2 Nodu 100.0 2.5E-51 5.4E-56 357.8 19.3 189 32-220 11-234 (234)
2 cd02432 Nodulin-21_like_1 Nodu 100.0 1.6E-50 3.5E-55 349.5 20.3 183 36-219 3-218 (218)
3 cd02435 CCC1 CCC1. CCC1: This 100.0 1.1E-49 2.4E-54 348.8 18.9 193 25-219 7-241 (241)
4 cd02434 Nodulin-21_like_3 Nodu 100.0 5.9E-49 1.3E-53 341.2 18.3 181 39-219 1-224 (225)
5 PF01988 VIT1: VIT family; In 100.0 1.8E-47 4E-52 328.7 18.2 179 40-218 1-213 (213)
6 KOG4473 Uncharacterized membra 100.0 2.6E-45 5.7E-50 311.6 14.4 196 25-220 19-247 (247)
7 cd02431 Ferritin_CCC1_C CCC1-r 100.0 5.2E-43 1.1E-47 286.7 17.4 149 41-219 1-149 (149)
8 TIGR00267 conserved hypothetic 100.0 1.3E-40 2.8E-45 277.6 16.2 167 42-217 1-168 (169)
9 cd02437 CCC1_like_1 CCC1-relat 100.0 7.2E-40 1.6E-44 274.2 17.6 174 39-219 1-175 (175)
10 cd02436 Nodulin-21 Nodulin-21. 100.0 9E-38 1.9E-42 253.7 15.4 151 39-193 1-151 (152)
11 cd01059 CCC1_like CCC1-related 100.0 1.1E-35 2.5E-40 241.5 15.7 142 41-219 1-143 (143)
12 COG1814 Uncharacterized membra 100.0 6.3E-27 1.4E-31 203.7 19.2 191 32-222 3-228 (229)
13 COG1814 Uncharacterized membra 94.7 0.38 8.1E-06 42.0 10.2 144 38-218 81-228 (229)
14 cd02437 CCC1_like_1 CCC1-relat 87.5 8.3 0.00018 32.1 10.2 81 132-213 93-173 (175)
15 TIGR02185 Trep_Strep conserved 82.7 28 0.00061 29.4 11.5 31 133-163 103-133 (189)
16 PF08006 DUF1700: Protein of u 72.7 53 0.0012 27.1 12.3 24 197-220 142-165 (181)
17 PRK12489 anaerobic C4-dicarbox 63.7 1.2E+02 0.0027 29.2 11.7 30 174-203 279-308 (443)
18 PRK10726 hypothetical protein; 60.9 77 0.0017 24.6 8.6 67 131-200 16-86 (105)
19 TIGR02359 thiW thiW protein. L 59.4 94 0.002 25.8 8.9 73 135-219 46-118 (160)
20 PF11151 DUF2929: Protein of u 54.8 56 0.0012 22.4 5.7 47 170-218 5-51 (57)
21 COG4709 Predicted membrane pro 51.2 1.5E+02 0.0033 25.5 8.9 22 139-160 80-101 (195)
22 PF06379 RhaT: L-rhamnose-prot 44.1 1.2E+02 0.0026 28.4 7.8 81 135-215 99-192 (344)
23 PF11239 DUF3040: Protein of u 41.3 33 0.00072 24.9 3.1 15 70-84 65-79 (82)
24 PF07907 YibE_F: YibE/F-like p 40.2 2.4E+02 0.0052 24.9 8.9 30 196-225 78-107 (244)
25 PRK12884 ubiA prenyltransferas 39.7 2.6E+02 0.0056 24.5 9.4 25 194-218 254-278 (279)
26 PRK12585 putative monovalent c 39.1 2.6E+02 0.0056 24.2 8.6 30 195-224 68-97 (197)
27 PF02532 PsbI: Photosystem II 38.4 37 0.00081 21.4 2.5 25 169-193 8-32 (36)
28 PF01618 MotA_ExbB: MotA/TolQ/ 37.8 58 0.0013 25.7 4.3 67 34-100 51-130 (139)
29 PF02632 BioY: BioY family; I 37.1 2.3E+02 0.0049 23.0 9.4 74 137-218 24-106 (148)
30 PF11712 Vma12: Endoplasmic re 35.8 1.8E+02 0.0038 23.3 6.8 22 167-188 80-101 (142)
31 PF03547 Mem_trans: Membrane t 35.6 2.1E+02 0.0044 26.0 8.1 74 143-216 250-331 (385)
32 PF13858 DUF4199: Protein of u 35.0 1.6E+02 0.0036 23.3 6.6 113 45-157 32-155 (163)
33 PF09622 DUF2391: Putative int 34.4 3.2E+02 0.007 24.6 8.8 55 168-222 35-89 (267)
34 PF06305 DUF1049: Protein of u 34.3 1.5E+02 0.0032 20.1 5.8 7 88-94 39-45 (68)
35 PF14015 DUF4231: Protein of u 34.2 1.7E+02 0.0037 21.7 6.2 21 141-161 23-43 (112)
36 PF01024 Colicin: Colicin pore 33.4 1.2E+02 0.0026 26.0 5.7 22 166-187 135-156 (187)
37 PF12084 DUF3561: Protein of u 32.8 2.1E+02 0.0045 22.4 6.3 66 131-199 19-88 (107)
38 PF12670 DUF3792: Protein of u 32.2 2.4E+02 0.0051 21.8 9.6 32 169-200 41-73 (116)
39 PF09605 Trep_Strep: Hypotheti 31.3 3.1E+02 0.0068 22.9 12.1 28 135-163 103-130 (186)
40 PHA00094 VI minor coat protein 30.7 1.8E+02 0.0038 22.9 5.7 42 179-220 19-60 (112)
41 PRK13871 conjugal transfer pro 30.6 2.8E+02 0.006 22.6 7.0 51 172-223 54-105 (135)
42 PRK10457 hypothetical protein; 30.4 2.2E+02 0.0048 20.9 6.0 19 167-185 28-46 (82)
43 PHA02753 hypothetical protein; 30.4 3.9E+02 0.0085 23.7 9.5 83 138-222 192-274 (298)
44 COG2056 Predicted permease [Ge 30.3 1.2E+02 0.0027 28.9 5.6 52 169-222 265-317 (444)
45 PF11241 DUF3043: Protein of u 30.1 2E+02 0.0043 24.3 6.3 25 137-161 70-94 (170)
46 COG3135 BenE Uncharacterized p 30.0 2.6E+02 0.0056 26.7 7.6 86 130-219 293-390 (402)
47 PF13829 DUF4191: Domain of un 30.0 2E+02 0.0043 25.4 6.5 15 193-207 51-65 (224)
48 COG0659 SUL1 Sulfate permease 29.8 5.5E+02 0.012 25.5 10.4 49 41-89 255-304 (554)
49 COG0342 SecD Preprotein transl 29.7 2E+02 0.0044 28.2 7.3 23 38-60 339-361 (506)
50 PF11364 DUF3165: Protein of u 29.4 1.9E+02 0.0041 21.5 5.3 41 146-186 2-48 (81)
51 PF09622 DUF2391: Putative int 29.3 4.3E+02 0.0093 23.9 9.9 27 135-161 135-161 (267)
52 COG0475 KefB Kef-type K+ trans 28.9 4.9E+02 0.011 24.4 11.2 85 83-191 241-325 (397)
53 COG0390 ABC-type uncharacteriz 27.7 4.6E+02 0.0099 23.6 9.3 69 145-216 13-82 (256)
54 COG4709 Predicted membrane pro 27.2 4.1E+02 0.0089 22.9 13.2 18 171-188 116-133 (195)
55 KOG4686 Predicted sugar transp 26.9 5.5E+02 0.012 24.3 11.4 76 132-209 351-431 (459)
56 PF09925 DUF2157: Predicted me 26.8 3.2E+02 0.007 21.6 10.9 82 136-220 32-114 (145)
57 COG2056 Predicted permease [Ge 26.3 4.8E+02 0.01 25.1 8.7 27 191-220 332-358 (444)
58 PF10031 DUF2273: Small integr 25.9 1.6E+02 0.0035 19.7 4.2 14 207-220 37-50 (51)
59 COG2851 CitM H+/citrate sympor 25.7 6.1E+02 0.013 24.4 9.5 28 174-201 289-316 (433)
60 PF10507 DUF2453: Protein of u 25.6 95 0.0021 24.4 3.4 39 50-95 23-61 (111)
61 TIGR00245 conserved hypothetic 25.0 4.9E+02 0.011 23.1 10.0 47 149-195 11-59 (248)
62 PF10710 DUF2512: Protein of u 25.0 2.6E+02 0.0056 22.6 6.0 18 203-220 64-81 (136)
63 COG0670 Integral membrane prot 24.2 4.9E+02 0.011 22.8 9.2 67 152-222 101-169 (233)
64 PF08006 DUF1700: Protein of u 23.6 4.1E+02 0.0089 21.7 9.4 14 139-152 80-93 (181)
65 PRK10132 hypothetical protein; 23.2 82 0.0018 24.5 2.7 21 133-153 83-104 (108)
66 PF11808 DUF3329: Domain of un 22.6 1.7E+02 0.0037 21.6 4.2 8 179-186 19-26 (90)
67 PF03594 BenE: Benzoate membra 22.5 6.8E+02 0.015 23.8 9.1 66 133-203 281-351 (378)
68 PRK03562 glutathione-regulated 22.3 7.9E+02 0.017 24.5 10.2 15 83-97 238-252 (621)
69 PF11505 DUF3216: Protein of u 21.9 80 0.0017 24.1 2.3 22 36-57 37-58 (97)
70 TIGR01594 holin_lambda phage h 21.9 3.8E+02 0.0082 20.7 6.8 31 181-211 32-62 (107)
71 PF06738 DUF1212: Protein of u 21.7 4.5E+02 0.0097 21.5 10.3 16 133-148 100-115 (193)
72 PRK06012 flhA flagellar biosyn 21.7 2.5E+02 0.0053 28.9 6.4 82 15-98 164-272 (697)
73 PRK14995 methyl viologen resis 21.7 5.4E+02 0.012 24.1 8.5 12 180-191 313-324 (495)
74 TIGR01399 hrcV type III secret 21.2 2.4E+02 0.0053 28.8 6.2 82 15-98 143-251 (677)
75 PRK15050 2-aminoethylphosphona 21.2 5.7E+02 0.012 22.4 8.1 24 135-158 23-46 (296)
76 TIGR00997 ispZ intracellular s 21.1 5.1E+02 0.011 21.8 7.5 9 152-160 7-15 (178)
77 PF11990 DUF3487: Protein of u 20.6 4.3E+02 0.0093 20.8 6.5 18 175-192 62-79 (121)
No 1
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=2.5e-51 Score=357.84 Aligned_cols=189 Identities=35% Similarity=0.441 Sum_probs=170.9
Q ss_pred cchHHhhHHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHH
Q 043274 32 FDYAQRAQWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQ 111 (226)
Q Consensus 32 ~~~~~~~~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~ 111 (226)
+++.++.+|+||+|||+||||+|+|++|+|+++++.|+.+|+++|+++++||++|||+|+|+|+|+|+|.+++|++||+|
T Consensus 11 ~~~~~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~~~~re~~ 90 (234)
T cd02433 11 RGRHRMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERR 90 (234)
T ss_pred cchhhhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcCCCCC-ch-----------------h----------------hh-hhcccCCChHHHHHHHHHHHHHhhHHHHH
Q 043274 112 KKITSNENHEE-PD-----------------E----------------NI-QREEALPNPAQAAIASALAFSVGAVVPLL 156 (226)
Q Consensus 112 ~~e~~~~~e~~-~~-----------------~----------------~~-~~~~~~~~P~~~al~t~~sf~iggliPll 156 (226)
+++++|+.|++ +. + |+ .++++..|||++|++||+||++|+++|++
T Consensus 91 ~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P~~aAl~sflsF~ig~liPLL 170 (234)
T cd02433 91 ELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNPWSAAVSSFLLFALGALIPVL 170 (234)
T ss_pred HhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986532 10 0 11 12344579999999999999999999999
Q ss_pred hHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043274 157 GSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 157 py~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~ 220 (226)
||+|..+...++.+|++++.++|+++|+++++++++||+|+++||+++|+++++++|++|++++
T Consensus 171 Pf~~~~~~~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 171 PFLFGMSGLAALVLSVLLVGLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998665567889999999999999999999999999999999999999999999999999985
No 2
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1.6e-50 Score=349.49 Aligned_cols=183 Identities=42% Similarity=0.629 Sum_probs=165.8
Q ss_pred HhhHHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhc
Q 043274 36 QRAQWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKIT 115 (226)
Q Consensus 36 ~~~~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~ 115 (226)
.+.+|+|++|||+||||+|+|++|+|++++..|+.+|+++|+++++||++|||+|+|+|+|||+|.+++|++||+|++++
T Consensus 3 ~~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~ 82 (218)
T cd02432 3 ERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERRELAE 82 (218)
T ss_pred hhHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCC-ch-----------------h--------------hh-hhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhcc
Q 043274 116 SNENHEE-PD-----------------E--------------NI-QREEALPNPAQAAIASALAFSVGAVVPLLGSAFVR 162 (226)
Q Consensus 116 ~~~~e~~-~~-----------------~--------------~~-~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~ 162 (226)
+|++|++ +. + |+ .++++..|||++|++||+||++|+++|++||+|.+
T Consensus 83 ~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~~~~~p~~aal~s~~sf~lg~liPllpy~~~~ 162 (218)
T cd02432 83 DPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILLAP 162 (218)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9986532 10 0 01 12344579999999999999999999999999866
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 163 DHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 163 ~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll 219 (226)
. ...+..+++++.++|+++|++|++++++||+|+++||+++|+++++++|++|+++
T Consensus 163 ~-~~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~aa~vty~iG~l~ 218 (218)
T cd02432 163 A-AWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218 (218)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4 4568889999999999999999999999999999999999999999999999875
No 3
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=1.1e-49 Score=348.77 Aligned_cols=193 Identities=26% Similarity=0.356 Sum_probs=169.7
Q ss_pred hhhhccccchHHhhHHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHH
Q 043274 25 AEKIGDEFDYAQRAQWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIA 104 (226)
Q Consensus 25 ~~~~~~~~~~~~~~~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~a 104 (226)
+...|.+.| ..+.+|+|++|||+||||+|+|++|+|+++++ ++++|+++|+++++||++|||+|||+|+|+|+|.+++
T Consensus 7 ~~~~~~~~~-~~~~~~lr~~VlG~nDGlvs~~alvaGvag~~-~~~~vll~Gla~liAgA~SMa~GeYlS~~sq~d~~~~ 84 (241)
T cd02435 7 STSSHSEKH-FTSPRIVRDIIIGLSDGLTVPFALTAGLSSLG-DTKLVITGGLAELAAGAISMGLGGYLAAKSERDHYQR 84 (241)
T ss_pred CCCCCcccc-ccccchHHHHHhhcchhhHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence 445556655 35688999999999999999999999999876 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcCCCCCc--h------------------h----------------hh-hhcccCCChHHHHHHHHHHH
Q 043274 105 QMKRDQQKKITSNENHEEP--D------------------E----------------NI-QREEALPNPAQAAIASALAF 147 (226)
Q Consensus 105 e~~re~~~~e~~~~~e~~~--~------------------~----------------~~-~~~~~~~~P~~~al~t~~sf 147 (226)
+++||+|+++++|+.|++. . + |+ .++++..|||++|+++|+||
T Consensus 85 ~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~elg~~~~~~~~p~~aAl~s~lsf 164 (241)
T cd02435 85 EHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMRFGLGLEEPDTSRALISALTIGLSY 164 (241)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHhhCCCccccCCHHHHHHHHHHHH
Confidence 9999999999999765321 0 0 00 11234579999999999999
Q ss_pred HHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 148 SVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIV-----KSSARVLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 148 ~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~-----~s~l~~l~~G~~aa~i~~~iG~ll 219 (226)
++|+++|++||+|.++...++.+|+++++++|+++|++++++++.+|+ |+++||+++|+++++++|++++++
T Consensus 165 ~lG~liPLlPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml~~G~~aa~vty~l~~~~ 241 (241)
T cd02435 165 FIGGLIPLLPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQMLVVGGLAAGAAWGLVKLL 241 (241)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999876566789999999999999999999999999988 999999999999999999999875
No 4
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=5.9e-49 Score=341.17 Aligned_cols=181 Identities=26% Similarity=0.375 Sum_probs=162.5
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcC
Q 043274 39 QWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNE 118 (226)
Q Consensus 39 ~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~ 118 (226)
+|+|++|||+|||++|++++|+|+++++.|+.+|+++|+++++||++|||+|+|+|+|+|+|.+++|++||+|+++++|+
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe 80 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-ch---------------------------------hhh-hhccc-CCChHHHHHHHHHHHHHhhHHHHHhHhhcc
Q 043274 119 NHEE-PD---------------------------------ENI-QREEA-LPNPAQAAIASALAFSVGAVVPLLGSAFVR 162 (226)
Q Consensus 119 ~e~~-~~---------------------------------~~~-~~~~~-~~~P~~~al~t~~sf~iggliPllpy~~~~ 162 (226)
.|++ +. +|+ ..+++ ..|||++|++||+||++|+++|++||+|.+
T Consensus 81 ~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~~~~~~P~~aAl~sflsf~~ggliPLlp~~~~~ 160 (225)
T cd02434 81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGL 160 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7632 10 011 01122 479999999999999999999999998865
Q ss_pred c------hhhHHHHHHHH-HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 163 D------HKVRLAVVAAV-ASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 163 ~------~~~a~~~si~~-t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll 219 (226)
. ....+.+++++ +.++|+++|++|++++++||+|+++||+++|+++++++|++|+++
T Consensus 161 ~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 161 YYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFFLGVLF 224 (225)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 24567888888 999999999999999999999999999999999999999999987
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=1.8e-47 Score=328.73 Aligned_cols=179 Identities=36% Similarity=0.530 Sum_probs=163.4
Q ss_pred HHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcCC
Q 043274 40 WLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNEN 119 (226)
Q Consensus 40 ~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~~ 119 (226)
|+|++|||+|||++|++++|+|+++++.|+++|+++|+++++|+++|||+|+|+|+|+|+|++++|++||+||++++||+
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC-ch-----------------hhh----------------hhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchh
Q 043274 120 HEE-PD-----------------ENI----------------QREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHK 165 (226)
Q Consensus 120 e~~-~~-----------------~~~----------------~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~ 165 (226)
|++ +. +++ ..+++..+||++|+++|+||++|+++|++||++.+...
T Consensus 81 e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~~~~~~p~~~al~~~~sf~lg~liPllp~~~~~~~~ 160 (213)
T PF01988_consen 81 EKEELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSPEEEESPWKAALATFLSFILGGLIPLLPYFFLPSVS 160 (213)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 743 10 000 11245679999999999999999999999999986223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 166 VRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKL 218 (226)
Q Consensus 166 ~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~l 218 (226)
.++.+|++++.++|+++|++|++++++||+|+++||+++|+++++++|++|+|
T Consensus 161 ~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~~~~~iG~L 213 (213)
T PF01988_consen 161 EAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAAVTYLIGYL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999999999999999999999985
No 6
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-45 Score=311.59 Aligned_cols=196 Identities=59% Similarity=0.891 Sum_probs=174.0
Q ss_pred hhhhccccchHHhhHHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHH
Q 043274 25 AEKIGDEFDYAQRAQWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIA 104 (226)
Q Consensus 25 ~~~~~~~~~~~~~~~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~a 104 (226)
++.+|++.|+.++.+|+|++|+|.||||++++++.+|+.++..|.++++++|+|+++|||+|||+|+|+|+|||.|+|.+
T Consensus 19 ~~~ek~~~~~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~Sq~D~e~a 98 (247)
T KOG4473|consen 19 KDQEKKTFDYFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKSQYDIEVA 98 (247)
T ss_pred cchhhhhhhhHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecchhhHHHH
Confidence 33355677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcCCCCC----------chh----------------------hh-hhcccCCChHHHHHHHHHHHHHhh
Q 043274 105 QMKRDQQKKITSNENHEE----------PDE----------------------NI-QREEALPNPAQAAIASALAFSVGA 151 (226)
Q Consensus 105 e~~re~~~~e~~~~~e~~----------~~~----------------------~~-~~~~~~~~P~~~al~t~~sf~igg 151 (226)
|.++|++|...+++.|.+ .+| |+ .++....+|.++|+.++++|.+||
T Consensus 99 e~q~erre~~a~~~~e~~E~~~Il~g~~~~E~lpvi~alq~~p~~~ldf~~R~elGl~~p~~~~p~qaA~asa~afslGg 178 (247)
T KOG4473|consen 99 EVQMERREFYANSNLENDEIADILLGEEEKEELPVIKALQRTPELMLDFIIRYELGLDEPAENRPLQAAAASALAFSLGG 178 (247)
T ss_pred HHHHHHHHhhccchhhhHHHHHHhcCCCchhccchhHHhhhChHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHhcc
Confidence 999999887655532211 011 11 233445699999999999999999
Q ss_pred HHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043274 152 VVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 152 liPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~ 220 (226)
++||+||+|.+++.....++++++.++||.|||.++.+++.+..|+.+|++++|+++++++|+++++++
T Consensus 179 ~vPLl~~~fi~~~~~~~v~~vv~~~~aL~~fG~~ga~lg~ak~vrs~~r~vv~G~lAmaatf~l~Klig 247 (247)
T KOG4473|consen 179 IVPLLPAAFVKDYKVRIVVSVVATTFALFMFGYVGAHLGKAKVVRSSVRVVVGGWLAMAATFGLTKLIG 247 (247)
T ss_pred HHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988888889999999999999999999999999999999999999999999999999975
No 7
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=100.00 E-value=5.2e-43 Score=286.71 Aligned_cols=149 Identities=25% Similarity=0.361 Sum_probs=141.3
Q ss_pred HHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcCCC
Q 043274 41 LRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNENH 120 (226)
Q Consensus 41 lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~~e 120 (226)
+||+|+|+|||++|++++++|++++..|+.+|+++|+++++|+++||++|||+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~---------------- 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES---------------- 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc----------------
Confidence 5899999999999999999999999999999999999999999999999999999999985332
Q ss_pred CCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 043274 121 EEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSAR 200 (226)
Q Consensus 121 ~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~ 200 (226)
|||++|++||+||++|+++|++||++.++...++.++++++.++|+++|++++|+++++|+|+++|
T Consensus 65 --------------~p~~~al~s~~sf~~g~~iPllp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~~~~s~~~~~~~~l~ 130 (149)
T cd02431 65 --------------NPVKSALYTGIAYIIGVVIPILPYLLLSSVYLALALSVTLAVLAILIFNFYISVASGISFRKKFIE 130 (149)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 899999999999999999999999988765678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043274 201 VLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 201 ~l~~G~~aa~i~~~iG~ll 219 (226)
|+++|+++++++|++|+++
T Consensus 131 ~~~~G~~aa~~t~~iG~l~ 149 (149)
T cd02431 131 MAGLALGAAFISFLLGYLL 149 (149)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999875
No 8
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=100.00 E-value=1.3e-40 Score=277.64 Aligned_cols=167 Identities=25% Similarity=0.311 Sum_probs=141.1
Q ss_pred HHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcCCCC
Q 043274 42 RAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNENHE 121 (226)
Q Consensus 42 r~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~~e~ 121 (226)
|++|+|+|||++|++++++|++++ .++.+|+++|+++++|+++||++|||+++|+|+| ||++|+|+++..++
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~-------~e~~ele~~~~~~~ 72 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEE-------REMRELEKSMLMDE 72 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 789999999999999999997555 5777999999999999999999999997666665 44444444443222
Q ss_pred C-chhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 043274 122 E-PDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSAR 200 (226)
Q Consensus 122 ~-~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~ 200 (226)
. +++...++..+.|||++|++++++|++|+++|++||++. +...++.++++++.++|+++|+++++++++||+|+++|
T Consensus 73 g~~~~~~~~~~~~~~p~~aAl~sgls~~~g~liPllp~~~~-~~~~a~~~s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr 151 (169)
T TIGR00267 73 GKLDDTIIYKQARRRVYMSGFIDGFSTFMGSFVPVLPFLVF-DRMTATIVTVLLTLIALLVLGVYLGRISRENILISSLK 151 (169)
T ss_pred CCCchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1 222334445566999999999999999999999999984 45778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043274 201 VLVGGWMAMAITFGLTK 217 (226)
Q Consensus 201 ~l~~G~~aa~i~~~iG~ 217 (226)
|+++|+++++++|++|.
T Consensus 152 ~~~~G~~aa~it~~iG~ 168 (169)
T TIGR00267 152 MVVIGLLVAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999874
No 9
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=100.00 E-value=7.2e-40 Score=274.22 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=145.4
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCc
Q 043274 39 QWLRAAVLGANDGLVSVASLMMGVGAVKT-DIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSN 117 (226)
Q Consensus 39 ~~lr~~V~G~~DGlvt~~~lv~G~~ga~~-~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~ 117 (226)
+++|++|+|+|||++|++++++|+++++. ++++|+++|+++++|+++||++|+|+|+|+| +.|+++|+++.+.++
T Consensus 1 ~~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~----~~~~~~~~~~~~~~~ 76 (175)
T cd02437 1 STIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGS----LRGMLEEKEKILLRL 76 (175)
T ss_pred CchHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhChhhhH
Confidence 36899999999999999999999998887 9999999999999999999999999997764 222222222222222
Q ss_pred CCCCCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Q 043274 118 ENHEEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKS 197 (226)
Q Consensus 118 ~~e~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s 197 (226)
+++ ..+...++....+||++++.++++|++|+++|++||++.+ ...++.++++++.++|+++|++|+|++++||+|+
T Consensus 77 ~~~--~~~~~~e~~~~~~~~~~al~sgls~~~G~llPLlp~~~~~-~~~a~~~si~~~~~~L~~~G~~~~~~~~~~~~~~ 153 (175)
T cd02437 77 EQM--LTSTREELAIRKADLPSGLIQGISTTLGGLLPLLPFLPFD-LWLAAGIAVAIVLAILFILGLVIGKISKINVAIS 153 (175)
T ss_pred HHH--HHHHHHHhccccChHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 211 1112234445679999999999999999999999998765 3678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043274 198 SARVLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 198 ~l~~l~~G~~aa~i~~~iG~ll 219 (226)
++|++.+|+++++++|.+|+++
T Consensus 154 ~~r~~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 154 FVWAVGMVITGISLVFSVGKLF 175 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999975
No 10
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=100.00 E-value=9e-38 Score=253.74 Aligned_cols=151 Identities=47% Similarity=0.593 Sum_probs=134.0
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcC
Q 043274 39 QWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNE 118 (226)
Q Consensus 39 ~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~ 118 (226)
+|+|++|||+||||+|++++++|+++++.++++|+++|+++++||++||+.|||+|++||+|.|+++++||++|+++..+
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i~~e~~el~rGl~ 80 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRNRARGPA 80 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHHHHHHHHhhcCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999965544
Q ss_pred CCCCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 043274 119 NHEEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTP 193 (226)
Q Consensus 119 ~e~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~ 193 (226)
.+. +.-+++.+..|||++++.|++||.+|+++|+++++|..+.... .+.++.+.++|+++|++.+|+++.+
T Consensus 81 ~~l---elgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~p~~~~-~~~~~~~~~aL~~~G~~~A~~g~a~ 151 (152)
T cd02436 81 PDS---EPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVASYASR-RVLPPQSSAPAAPPGRSPATVTASS 151 (152)
T ss_pred hhh---hcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 321 1123445678999999999999999999999999955444555 7788899999999999999999875
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=100.00 E-value=1.1e-35 Score=241.47 Aligned_cols=142 Identities=49% Similarity=0.699 Sum_probs=135.0
Q ss_pred HHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcCCC
Q 043274 41 LRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNENH 120 (226)
Q Consensus 41 lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~~e 120 (226)
+|++|||+|||++|++++++|+.++..|+++|+++|+++++|+++||+.|||+|+|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~-------------------- 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------------------
Confidence 589999999999999999999999988999999999999999999999999999999875
Q ss_pred CCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHH-HHHHHHHHHHHHHHhCCCchhHHHH
Q 043274 121 EEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAV-ASIALVVFGVLGALLGKTPIVKSSA 199 (226)
Q Consensus 121 ~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~-t~~~L~~lG~~~a~~s~~~~~~s~l 199 (226)
++++++++||++|+++|++||++.+....++.+++++ +.+.|+++|++|+|.++++|+|+++
T Consensus 61 -----------------~~al~~~~s~~~g~lipllp~~~~~~~~~a~~~si~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 123 (143)
T cd01059 61 -----------------KAALASGLSFILGGLLPLLPYLLLPAGSLALAVSVALVVALALFLLGAFVAKLGGAKKIRAAL 123 (143)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8999999999999999999999886546788889998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043274 200 RVLVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 200 ~~l~~G~~aa~i~~~iG~ll 219 (226)
||+.+|+++++++|.+|+++
T Consensus 124 ~~~~~g~~~a~i~~~~g~l~ 143 (143)
T cd01059 124 RMVVLGLLAAALTYLLGRLF 143 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.95 E-value=6.3e-27 Score=203.67 Aligned_cols=191 Identities=36% Similarity=0.497 Sum_probs=162.8
Q ss_pred cchHHhhHHHHHHHHhcchhHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHH
Q 043274 32 FDYAQRAQWLRAAVLGANDGLVSVASLMMGVGAVK-TDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQ 110 (226)
Q Consensus 32 ~~~~~~~~~lr~~V~G~~DGlvt~~~lv~G~~ga~-~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~ 110 (226)
+|..++.+|.|..++|.|||++++..++.|..... .....++..++++.+.+++||..|+|+|.++|.|.+.++.++++
T Consensus 3 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~~~~ 82 (229)
T COG1814 3 KHYINRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQKER 82 (229)
T ss_pred ccHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhHHHH
Confidence 56778999999999999999999999999998765 66777777779999999999999999999999999999888766
Q ss_pred HHhhcCcCCCCC------------------chhh---------------hhhcccCCChHHHH-HHHHHHHHHhhHHHHH
Q 043274 111 QKKITSNENHEE------------------PDEN---------------IQREEALPNPAQAA-IASALAFSVGAVVPLL 156 (226)
Q Consensus 111 ~~~e~~~~~e~~------------------~~~~---------------~~~~~~~~~P~~~a-l~t~~sf~iggliPll 156 (226)
++....+..+.. .+++ ........+|+.++ ++++++|++|+++|++
T Consensus 83 ~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~sg~s~~~G~l~Pll 162 (229)
T COG1814 83 RLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSRPLLAATLSSGISFIIGALLPLL 162 (229)
T ss_pred HHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 665544432110 0000 01122225899999 7999999999999999
Q ss_pred hHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043274 157 GSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLIGTG 222 (226)
Q Consensus 157 py~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~~~ 222 (226)
||++.++...++.+|+++++++|+++|++++|+++.+++++++||+..|++++.++|++|++++..
T Consensus 163 p~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg~l~~~~ 228 (229)
T COG1814 163 PFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAALLTYLVGRLFGIF 228 (229)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998877788999999999999999999999999999999999999999999999999999853
No 13
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=94.67 E-value=0.38 Score=42.01 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=89.9
Q ss_pred hHHHHHHHHhcchhHHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcC
Q 043274 38 AQWLRAAVLGANDGLVSVASLMMGVGAVKTDIKAML-LAGFAGLVAGAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITS 116 (226)
Q Consensus 38 ~~~lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl-~aGla~liAgalSMa~G~YlS~kse~d~~~ae~~re~~~~e~~ 116 (226)
.++..+..+|.+|+++..++...|......+..... ..+..-...+..+|+++.|++. ++
T Consensus 81 ~~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---------------- 141 (229)
T COG1814 81 ERRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSS---RP---------------- 141 (229)
T ss_pred HHHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---hh----------------
Confidence 456677888888888888888888776554444444 6677777777788888888740 00
Q ss_pred cCCCCCchhhhhhcccCCCh-HHHHHHHHHHHHHhhHHHHHhHhhccch-hhHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Q 043274 117 NENHEEPDENIQREEALPNP-AQAAIASALAFSVGAVVPLLGSAFVRDH-KVRLAVVAAVASIALVVFGVLGALLG-KTP 193 (226)
Q Consensus 117 ~~~e~~~~~~~~~~~~~~~P-~~~al~t~~sf~iggliPllpy~~~~~~-~~a~~~si~~t~~~L~~lG~~~a~~s-~~~ 193 (226)
.... +.+++..+++- +..++|.+..--.... ...+.++++...+ +.......+..+ ...
T Consensus 142 ----------------~~~~~l~sg~s~~~G~-l~Pllp~~~~~~~~~al~~si~~~~l~L~i-lG~~~a~~s~~~~~~~ 203 (229)
T COG1814 142 ----------------LLAATLSSGISFIIGA-LLPLLPFFFLPDVLSALIASIILALLALAI-LGAVLARLSGASIAKS 203 (229)
T ss_pred ----------------HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHHHH
Confidence 0011 56666666665 4455565544322222 3444554544444 444444444444 556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 194 IVKSSARVLVGGWMAMAITFGLTKL 218 (226)
Q Consensus 194 ~~~s~l~~l~~G~~aa~i~~~iG~l 218 (226)
..|....-+....++..++.++|..
T Consensus 204 ~lr~v~~gl~aa~lt~~vg~l~~~~ 228 (229)
T COG1814 204 ILRMVLLGLLAALLTYLVGRLFGIF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788888888888999999988865
No 14
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=87.51 E-value=8.3 Score=32.09 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=42.6
Q ss_pred cCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 043274 132 ALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAI 211 (226)
Q Consensus 132 ~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i 211 (226)
...+|+++++..++ ..+..++|.++.-..........+++..-++.=+..+.+...--..+.+|...--++.+.++-.+
T Consensus 93 ~~~~al~sgls~~~-G~llPLlp~~~~~~~~a~~~si~~~~~~L~~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~v 171 (175)
T cd02437 93 DLPSGLIQGISTTL-GGLLPLLPFLPFDLWLAAGIAVAIVLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSV 171 (175)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999986655 55777777764322222223333333322222233333333333456667666666666666665
Q ss_pred HH
Q 043274 212 TF 213 (226)
Q Consensus 212 ~~ 213 (226)
+.
T Consensus 172 g~ 173 (175)
T cd02437 172 GK 173 (175)
T ss_pred HH
Confidence 54
No 15
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=82.72 E-value=28 Score=29.40 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHHHHHhhHHHHHhHhhccc
Q 043274 133 LPNPAQAAIASALAFSVGAVVPLLGSAFVRD 163 (226)
Q Consensus 133 ~~~P~~~al~t~~sf~iggliPllpy~~~~~ 163 (226)
.+|++++.+.-.+.+.+...-|.+|+++..+
T Consensus 103 Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d 133 (189)
T TIGR02185 103 YKNKRKVTIAYVLFFLLVAMGPILPIWLFKD 133 (189)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3466666666566555677888899988765
No 16
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=72.67 E-value=53 Score=27.11 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043274 197 SSARVLVGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 197 s~l~~l~~G~~aa~i~~~iG~ll~ 220 (226)
.++-.+.+|++...+++.+.+++.
T Consensus 142 ~~i~~~glGlll~~~~~~l~k~~~ 165 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYLTKLFI 165 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777666654
No 17
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=63.70 E-value=1.2e+02 Score=29.20 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043274 174 VASIALVVFGVLGALLGKTPIVKSSARVLV 203 (226)
Q Consensus 174 ~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~ 203 (226)
.+.+.+++-+.=-.++.+.+.+|++.+-++
T Consensus 279 ~a~~i~l~~k~~~~~i~~~~vF~sGm~a~v 308 (443)
T PRK12489 279 TGALILILTKTDPASISNGEVFKSGMIAIV 308 (443)
T ss_pred HHHHHHHHcCCCHHHhccchhhHHHHHHHH
Confidence 333444445555566778888998888543
No 18
>PRK10726 hypothetical protein; Provisional
Probab=60.90 E-value=77 Score=24.63 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=42.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhHHHHHhHh----hccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 043274 131 EALPNPAQAAIASALAFSVGAVVPLLGSA----FVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSAR 200 (226)
Q Consensus 131 ~~~~~P~~~al~t~~sf~iggliPllpy~----~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~ 200 (226)
++...++--|++-|++|.+.-.||.+-|- |.--+.+.|..+..=. -.+.|.....+-+.+...+.+-
T Consensus 16 de~s~sl~Gav~GFv~ywlA~aiPfl~YG~nTlfF~LYTWPFFLALmPv---sVlvGi~l~~Ll~g~l~~s~l~ 86 (105)
T PRK10726 16 EETTWSLPGAVVGFVSWLLALAIPFLIYGSNTLFFFLYTWPFFLALMPV---SVLVGIALHSLLRGKLLYSILF 86 (105)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhccchhHHHHH
Confidence 34456677899999999999999999882 1112455554433321 1245777777766666555443
No 19
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=59.37 E-value=94 Score=25.81 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 043274 135 NPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFG 214 (226)
Q Consensus 135 ~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~ 214 (226)
-||..++..+++-++..+.+.-+.+ ++..+...+ ++-|++ .|-++..++....+.+..|++.+.++|-
T Consensus 46 GP~~g~~~a~i~~ll~~l~~~g~~~-------afpg~~~~a----~laGli-yrk~~~~~~a~~ge~igt~iig~~~s~p 113 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTLGLGTVL-------AFPGGMPGA----LLAGLL-YRFGRKHYWASLGEILGTGIIGSLLAYP 113 (160)
T ss_pred chHHHHHHHHHHHHHHHHhCCCchH-------HHHHHHHHH----HHHHHH-HHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999998888776532211 122112111 122333 3445566777778888888888887777
Q ss_pred HHHHH
Q 043274 215 LTKLI 219 (226)
Q Consensus 215 iG~ll 219 (226)
+-.++
T Consensus 114 i~~~~ 118 (160)
T TIGR02359 114 VAAWL 118 (160)
T ss_pred HHHHH
Confidence 66443
No 20
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.76 E-value=56 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 170 VVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKL 218 (226)
Q Consensus 170 ~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~l 218 (226)
++++.+++...+.||+.+.+++.++= .....+++.+.+.+.+.+..+
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~~~n--~~~~~Ii~vi~~i~~~~~~~~ 51 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGVTYN--FTTAAIIAVIFGIIVANIIAV 51 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677889999988877543 222333444444444444433
No 21
>COG4709 Predicted membrane protein [Function unknown]
Probab=51.20 E-value=1.5e+02 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhHHHHHhHhh
Q 043274 139 AAIASALAFSVGAVVPLLGSAF 160 (226)
Q Consensus 139 ~al~t~~sf~iggliPllpy~~ 160 (226)
.+..+.++-.+...+-.+|-++
T Consensus 80 ~aii~~~~L~~~~v~i~Lpl~~ 101 (195)
T COG4709 80 RAIIALIGLGLLAVIIGLPLLI 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 22
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=44.06 E-value=1.2e+02 Score=28.41 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHh---H--hhccchhhHHHHHHHHHHHHHHHHHH---HHHHh-----CCCchhHHHHHH
Q 043274 135 NPAQAAIASALAFSVGAVVPLLG---S--AFVRDHKVRLAVVAAVASIALVVFGV---LGALL-----GKTPIVKSSARV 201 (226)
Q Consensus 135 ~P~~~al~t~~sf~iggliPllp---y--~~~~~~~~a~~~si~~t~~~L~~lG~---~~a~~-----s~~~~~~s~l~~ 201 (226)
-.+-.++..+++-.+|.++|.+- | ++..+.......-++++++...+.|. .|.|- .+-+..|+.+--
T Consensus 99 vSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iA 178 (344)
T PF06379_consen 99 VSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIA 178 (344)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHH
Confidence 45778899999999999997762 1 12222122233344555555555554 34332 233467777778
Q ss_pred HHHHHHHHHHHHHH
Q 043274 202 LVGGWMAMAITFGL 215 (226)
Q Consensus 202 l~~G~~aa~i~~~i 215 (226)
++.|+..+..+|++
T Consensus 179 v~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 179 VLSGVMSACFNFGL 192 (344)
T ss_pred HHHHHHHHHHHHHH
Confidence 88998888888775
No 23
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=41.32 E-value=33 Score=24.94 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043274 70 KAMLLAGFAGLVAGA 84 (226)
Q Consensus 70 ~~Vl~aGla~liAga 84 (226)
..+.+.|+.-+++++
T Consensus 65 ~~~~v~G~~v~~~~~ 79 (82)
T PF11239_consen 65 PPLGVAGFVVMVAGA 79 (82)
T ss_pred hHHHHHHHHHHHHHH
Confidence 336667777666655
No 24
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=40.22 E-value=2.4e+02 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 043274 196 KSSARVLVGGWMAMAITFGLTKLIGTGGLQ 225 (226)
Q Consensus 196 ~s~l~~l~~G~~aa~i~~~iG~ll~~~~~~ 225 (226)
-+.+-++..-+++..+++.++++.+-.|+.
T Consensus 78 ~A~~~tl~~~~~~~~l~~~~~~~~~~~G~~ 107 (244)
T PF07907_consen 78 AAFIGTLIGVLLAGILALLVMKLAHLQGFN 107 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445555666667778888888888776653
No 25
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=39.71 E-value=2.6e+02 Score=24.45 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043274 194 IVKSSARVLVGGWMAMAITFGLTKL 218 (226)
Q Consensus 194 ~~~s~l~~l~~G~~aa~i~~~iG~l 218 (226)
..+..-.....+.+-+++++.+|.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (279)
T PRK12884 254 TIRKVRKITLTAMLLALVAFALGAI 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555677777778888888763
No 26
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.07 E-value=2.6e+02 Score=24.21 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043274 195 VKSSARVLVGGWMAMAITFGLTKLIGTGGL 224 (226)
Q Consensus 195 ~~s~l~~l~~G~~aa~i~~~iG~ll~~~~~ 224 (226)
.+..+-.+++=+.+-..++.+++..-..|.
T Consensus 68 lklLLiIvFllLTaPVaSHaIARAAyr~Gv 97 (197)
T PRK12585 68 ARVLLAVLFIFLTTPVASHLINRAAYDTGV 97 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455555555555556777777776655544
No 27
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=38.43 E-value=37 Score=21.36 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Q 043274 169 AVVAAVASIALVVFGVLGALLGKTP 193 (226)
Q Consensus 169 ~~si~~t~~~L~~lG~~~a~~s~~~ 193 (226)
..++++.++.||++|+...--++.|
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred ehhhHHHHHHHHhccccCCCCCCCC
Confidence 3456677788999999876555443
No 28
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=37.81 E-value=58 Score=25.75 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=36.0
Q ss_pred hHHhhHHHHHH--------HHhcchhHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHHhhhhhchhhhhhchhh
Q 043274 34 YAQRAQWLRAA--------VLGANDGLVSVASLMMGVGA-----VKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCTQRD 100 (226)
Q Consensus 34 ~~~~~~~lr~~--------V~G~~DGlvt~~~lv~G~~g-----a~~~~~~Vl~aGla~liAgalSMa~G~YlS~kse~d 100 (226)
..++.++++.+ ++|---|++.+|.-+..... -..+-.+-+++.+.|++.+-+++-+..|+..+.++.
T Consensus 51 ~~~~~~~l~~i~~~aP~lGLlGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~tT~~GL~vai~~~~~~~~l~~~~~~~ 130 (139)
T PF01618_consen 51 LERNLSILRTIASIAPLLGLLGTVIGMIEAFQALAETGSGDPSQLAGGISVALITTAYGLVVAIPALPFYNYLKRRVERI 130 (139)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666654 35555566666666543222 111233445555666666666666667765555443
No 29
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=37.14 E-value=2.3e+02 Score=23.03 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhHH--HHHh-------HhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 043274 137 AQAAIASALAFSVGAVV--PLLG-------SAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWM 207 (226)
Q Consensus 137 ~~~al~t~~sf~iggli--Pllp-------y~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~ 207 (226)
.|.|..+-+.|++-|++ |+.. +++.+ ...+++++.++. ++.|+.+.|..+.+ +..+..+..++
T Consensus 24 ~~~g~~s~~~YlllG~~GlPVFagg~gG~~~l~gP--TgGyl~gf~~~a---~i~g~~~~~~~~~~---~~~~~~~~~~~ 95 (148)
T PF02632_consen 24 PRRGFLSVLLYLLLGAIGLPVFAGGSGGLGYLLGP--TGGYLLGFPLAA---LIIGLLAERLKRSR---SFLRLILAMLV 95 (148)
T ss_pred hHHHHHHHHHHHHHHHHCCchhcCCCCchHHHhcC--CChHHHHHHHHH---HHHHHHHHhccccc---hHHHHHHHHHH
Confidence 35566666666666554 5543 23322 344555555443 35677777766543 33334444444
Q ss_pred HHHHHHHHHHH
Q 043274 208 AMAITFGLTKL 218 (226)
Q Consensus 208 aa~i~~~iG~l 218 (226)
...+.|.+|..
T Consensus 96 g~~iiy~~G~~ 106 (148)
T PF02632_consen 96 GLLIIYIFGII 106 (148)
T ss_pred HHHHHHHhHHH
Confidence 45566666643
No 30
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.78 E-value=1.8e+02 Score=23.26 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043274 167 RLAVVAAVASIALVVFGVLGAL 188 (226)
Q Consensus 167 a~~~si~~t~~~L~~lG~~~a~ 188 (226)
.+++=+++++++.|++||+-+.
T Consensus 80 s~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 80 STVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666667777775555
No 31
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=35.61 E-value=2.1e+02 Score=26.00 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=43.2
Q ss_pred HHHHHHHhhHHHHHhHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHhCCC---ch----hHHHHHHHHHHHHHHHHHHH
Q 043274 143 SALAFSVGAVVPLLGSAFVRD-HKVRLAVVAAVASIALVVFGVLGALLGKT---PI----VKSSARVLVGGWMAMAITFG 214 (226)
Q Consensus 143 t~~sf~iggliPllpy~~~~~-~~~a~~~si~~t~~~L~~lG~~~a~~s~~---~~----~~s~l~~l~~G~~aa~i~~~ 214 (226)
..++.+++...|..|+++... ....-.++-..+-++|+++|+..++-... ++ +....|+++.=++...+.+.
T Consensus 250 ~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~ 329 (385)
T PF03547_consen 250 IILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFL 329 (385)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555656333211 01112334455668899999988764322 22 23677888888887777777
Q ss_pred HH
Q 043274 215 LT 216 (226)
Q Consensus 215 iG 216 (226)
++
T Consensus 330 ~~ 331 (385)
T PF03547_consen 330 LG 331 (385)
T ss_pred HC
Confidence 66
No 32
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=34.97 E-value=1.6e+02 Score=23.34 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHhcchhHHHHHHHHHHhhc-------cccchHHHHHHHHHHHHHHHhhhhhchhhhhhc-hhhHHHHHHHHHHHHh---
Q 043274 45 VLGANDGLVSVASLMMGVGA-------VKTDIKAMLLAGFAGLVAGAGSMAIGEFVSVCT-QRDIEIAQMKRDQQKK--- 113 (226)
Q Consensus 45 V~G~~DGlvt~~~lv~G~~g-------a~~~~~~Vl~aGla~liAgalSMa~G~YlS~ks-e~d~~~ae~~re~~~~--- 113 (226)
.+|...-+++.+.++.++-- +..+-..-+..|+.-.+=+++=+++..|+=..- +.|+.+.-.+..++++
T Consensus 32 ~~~~~~~~~~~~~i~~~i~~~R~~~~~g~isf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~~~~~~~~ 111 (163)
T PF13858_consen 32 WLGILSMVITIIFIYFAIRRYRKKYNGGFISFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQIEEMKES 111 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence 33555566677777666631 123344445555554444444444444443222 3343322222222222
Q ss_pred hcCcCCCCCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHh
Q 043274 114 ITSNENHEEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLG 157 (226)
Q Consensus 114 e~~~~~e~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllp 157 (226)
+..++..++..++..+-.+.-+|...++..++..+++|++.-++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~i~sli 155 (163)
T PF13858_consen 112 GSNPEMIEEQIEQELEMKESFSPFSLAFSGFISNLIFGFIISLI 155 (163)
T ss_pred ccCHhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111101111122334467666666666666666554444
No 33
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=34.44 E-value=3.2e+02 Score=24.65 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043274 168 LAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLIGTG 222 (226)
Q Consensus 168 ~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~~~ 222 (226)
+..-+.++...++.+.+..+.=.+..|.....|.+..=.+++.++..+=.++++.
T Consensus 35 ll~~l~l~~~~l~~l~~~~gFr~~~~~~~~~~d~v~A~~ig~v~a~~~L~~l~~l 89 (267)
T PF09622_consen 35 LLLLLALTVLLLVLLTRQSGFRKRRRWRDAVRDAVEALAIGAVVAAAVLTLLGKL 89 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444566666666666655554455555555554433333344444444444443
No 34
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.28 E-value=1.5e+02 Score=20.10 Aligned_cols=7 Identities=0% Similarity=0.045 Sum_probs=2.8
Q ss_pred hhchhhh
Q 043274 88 AIGEFVS 94 (226)
Q Consensus 88 a~G~YlS 94 (226)
....++.
T Consensus 39 ~~~~~~~ 45 (68)
T PF06305_consen 39 SLPSRLR 45 (68)
T ss_pred HHHHHHH
Confidence 3344443
No 35
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.15 E-value=1.7e+02 Score=21.66 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhHHHHHhHhhc
Q 043274 141 IASALAFSVGAVVPLLGSAFV 161 (226)
Q Consensus 141 l~t~~sf~iggliPllpy~~~ 161 (226)
..+.+.-++++++|++..+..
T Consensus 23 ~~~i~~~~~~a~i~~l~~~~~ 43 (112)
T PF14015_consen 23 IASIILSVLGAVIPVLASLSG 43 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444447888998665543
No 36
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=33.45 E-value=1.2e+02 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 043274 166 VRLAVVAAVASIALVVFGVLGA 187 (226)
Q Consensus 166 ~a~~~si~~t~~~L~~lG~~~a 187 (226)
..+.++.+.+.+++++|++..+
T Consensus 135 Es~~~~~~As~v~a~~fs~~~~ 156 (187)
T PF01024_consen 135 ESLAAGGAASAVAAFAFSFILG 156 (187)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666
No 37
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=32.80 E-value=2.1e+02 Score=22.38 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=40.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhHHHHHhHh----hccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 043274 131 EALPNPAQAAIASALAFSVGAVVPLLGSA----FVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSA 199 (226)
Q Consensus 131 ~~~~~P~~~al~t~~sf~iggliPllpy~----~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l 199 (226)
++....+--|++-|++|.+.-.+|.+-|- |.--+.+.|..+..=+ ..+.|.....+-+.+...+.+
T Consensus 19 de~t~sl~G~v~GF~~~wLAlaiPfl~YG~nTLfFfLYTWPFFLALmPv---sVl~Gi~l~~ll~g~l~~s~~ 88 (107)
T PF12084_consen 19 DEPTWSLPGGVVGFVFWWLALAIPFLVYGSNTLFFFLYTWPFFLALMPV---SVLIGIALSSLLRGKLLWSLL 88 (107)
T ss_pred CCCcccccchhHHHHHHHHHHhhHHhhhccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCcEeeehh
Confidence 44456677888999999998889988771 1112455555444322 235577777766666555443
No 38
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=32.21 E-value=2.4e+02 Score=21.75 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-hhHHHHH
Q 043274 169 AVVAAVASIALVVFGVLGALLGKTP-IVKSSAR 200 (226)
Q Consensus 169 ~~si~~t~~~L~~lG~~~a~~s~~~-~~~s~l~ 200 (226)
....+++.++.++=|++.+|-.+++ |.....-
T Consensus 41 ~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~ 73 (116)
T PF12670_consen 41 WLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLV 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 4567777888899999999877654 5555443
No 39
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=31.26 E-value=3.1e+02 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHhHhhccc
Q 043274 135 NPAQAAIASALAFSVGAVVPLLGSAFVRD 163 (226)
Q Consensus 135 ~P~~~al~t~~sf~iggliPllpy~~~~~ 163 (226)
|++.+ ..+..-|.++-.-|.+|++|..+
T Consensus 103 ~~~~~-~iay~vf~~~~~g~~~p~~~~~~ 130 (186)
T PF09605_consen 103 SKKRN-TIAYAVFSLGYMGPYLPIWFMRD 130 (186)
T ss_pred cHHHH-HHHHHHHHHHHHhhHHHHHHhHH
Confidence 44443 33334444444468888888754
No 40
>PHA00094 VI minor coat protein
Probab=30.73 E-value=1.8e+02 Score=22.94 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043274 179 LVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 179 L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~ 220 (226)
-.++||+..++++.--.....-.+++|++-+..+...+.+.|
T Consensus 19 ~~~~gyfa~f~tk~iarn~liisl~igLil~~~~~l~~~l~~ 60 (112)
T PHA00094 19 ANLIGYFAKFFTRGIARNALAISLFIGLILGLNSALVALLSD 60 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655433333333445555555555555555444
No 41
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=30.65 E-value=2.8e+02 Score=22.61 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043274 172 AAVASIALVVFGVLGALLGKTP-IVKSSARVLVGGWMAMAITFGLTKLIGTGG 223 (226)
Q Consensus 172 i~~t~~~L~~lG~~~a~~s~~~-~~~s~l~~l~~G~~aa~i~~~iG~ll~~~~ 223 (226)
..++++++.+.|.....=...+ +.|..+..++...+....++.+ .+|+..|
T Consensus 54 ~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg~~il~gAt~i~-~lFg~~G 105 (135)
T PRK13871 54 GFIALAAVAIAGAMLIFGGELNDFARRLCYVALVGGVLLGATQIV-ALFGATG 105 (135)
T ss_pred HHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHhhHHHH-HHHcccc
Confidence 3444455555554333322233 4477777777776766677766 5555443
No 42
>PRK10457 hypothetical protein; Provisional
Probab=30.42 E-value=2.2e+02 Score=20.95 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043274 167 RLAVVAAVASIALVVFGVL 185 (226)
Q Consensus 167 a~~~si~~t~~~L~~lG~~ 185 (226)
.+..++++..+.=++=|++
T Consensus 28 G~~~tiilGiiGA~iGg~l 46 (82)
T PRK10457 28 GFFMTIILGIVGAVVGGWI 46 (82)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3444455444443333433
No 43
>PHA02753 hypothetical protein; Provisional
Probab=30.40 E-value=3.9e+02 Score=23.72 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 043274 138 QAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFGLTK 217 (226)
Q Consensus 138 ~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~iG~ 217 (226)
-.++..++.+.+|+.+--+-|.+.. .+++.--++=+.+....+=.+|.+-..+....-.+.+-.+=+....++|++|.
T Consensus 192 ~~ALAl~lG~VVG~Aia~lL~~~~~--V~Af~GFIi~~~LlvaalvifkT~~kskdi~eiLlDl~aiFi~~~lvgygi~~ 269 (298)
T PHA02753 192 GFALALGLGAVVGGAIAGLLFMAGE--VSAFAGFIINIGLLVAALVIFKTFPKSKDIAEILLDLAAIFIFKFLVGYGIGP 269 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 3566666777777666555544432 23333222222222233333455444444555455555555556778888887
Q ss_pred HHhhc
Q 043274 218 LIGTG 222 (226)
Q Consensus 218 ll~~~ 222 (226)
.+-.+
T Consensus 270 aL~aA 274 (298)
T PHA02753 270 ALWAA 274 (298)
T ss_pred HHHHh
Confidence 66433
No 44
>COG2056 Predicted permease [General function prediction only]
Probab=30.29 E-value=1.2e+02 Score=28.89 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 043274 169 AVVAAVASIALVVFGVLGALLGKTPIVKSSAR-VLVGGWMAMAITFGLTKLIGTG 222 (226)
Q Consensus 169 ~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~-~l~~G~~aa~i~~~iG~ll~~~ 222 (226)
+..-...++.+++.|.+|=+=++. .+..+++ |-.+|. .++++-+.+..++.+
T Consensus 265 ilgal~gliv~~~~gv~~~ke~d~-~~~~G~kmMa~IgF-VMl~AaGfa~Vi~~T 317 (444)
T COG2056 265 ILGALAGLIVFFLSGVIKWKETDD-VFTEGVKMMAFIGF-VMLVAAGFAEVINAT 317 (444)
T ss_pred hHHHHHHHHHHHHhcceehhhhHH-HHHhhHHHHHHHHH-HHHHHhHHHHHHHhc
Confidence 344445555566666666554443 3333333 344443 455555555555544
No 45
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=30.05 E-value=2e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHhHhhc
Q 043274 137 AQAAIASALAFSVGAVVPLLGSAFV 161 (226)
Q Consensus 137 ~~~al~t~~sf~iggliPllpy~~~ 161 (226)
|..+=.+...|++-.++.++...|.
T Consensus 70 ~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 70 YVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444443
No 46
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.97 E-value=2.6e+02 Score=26.68 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHh----CCCchhHHHHHH----
Q 043274 130 EEALPNPAQAAIASALAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALL----GKTPIVKSSARV---- 201 (226)
Q Consensus 130 ~~~~~~P~~~al~t~~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~----s~~~~~~s~l~~---- 201 (226)
+.+..+-|+++++.++.|+++|+.--.-.-+ ..++..+.+..+..|.++|-+++-+ ++.++....+-.
T Consensus 293 HpD~~rry~Aa~~agi~ylv~GlF~~~~~~l----~~alP~~li~~lAGLALlg~~~~~l~~A~~~~~~R~aAlvtF~VT 368 (402)
T COG3135 293 HPDPARRYTAALVAGIFYLLAGLFGGALVGL----MAALPASLIAALAGLALLGTLGNSLQAALKDEREREAALVTFLVT 368 (402)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhheeeh
Q ss_pred ----HHHHHHHHHHHHHHHHHH
Q 043274 202 ----LVGGWMAMAITFGLTKLI 219 (226)
Q Consensus 202 ----l~~G~~aa~i~~~iG~ll 219 (226)
.+.|+.++.-+...|++.
T Consensus 369 aSG~tl~GIgaafWGLvaG~~~ 390 (402)
T COG3135 369 ASGLTLFGIGAAFWGLVAGLLV 390 (402)
T ss_pred hccceeecccHHHHHHHHHHHH
No 47
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.95 E-value=2e+02 Score=25.37 Aligned_cols=15 Identities=7% Similarity=-0.199 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHHHH
Q 043274 193 PIVKSSARVLVGGWM 207 (226)
Q Consensus 193 ~~~~s~l~~l~~G~~ 207 (226)
+||.-.+--+..|++
T Consensus 51 ~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 51 SWWYWLIIGILLGLL 65 (224)
T ss_pred cHHHHHHHHHHHHHH
Confidence 333333333334433
No 48
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=29.85 E-value=5.5e+02 Score=25.47 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHhcchhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhh-hhh
Q 043274 41 LRAAVLGANDGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGS-MAI 89 (226)
Q Consensus 41 lr~~V~G~~DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalS-Ma~ 89 (226)
+--+++|..|-++|.-++-.--.-...+++=.+--|++|.+++-+. |..
T Consensus 255 l~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p~ 304 (554)
T COG0659 255 LALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPA 304 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCccc
Confidence 3445677777776655443333223456677888999998887765 444
No 49
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=29.71 E-value=2e+02 Score=28.22 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=12.7
Q ss_pred hHHHHHHHHhcchhHHHHHHHHH
Q 043274 38 AQWLRAAVLGANDGLVSVASLMM 60 (226)
Q Consensus 38 ~~~lr~~V~G~~DGlvt~~~lv~ 60 (226)
.++++..+.-+.=|++.++..+.
T Consensus 339 ~~~i~~gi~Agl~g~~~V~vfm~ 361 (506)
T COG0342 339 ADSIKAGLIAGLIGLALVAVFML 361 (506)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555555544443
No 50
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.41 E-value=1.9e+02 Score=21.52 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHhHhhccch------hhHHHHHHHHHHHHHHHHHHHH
Q 043274 146 AFSVGAVVPLLGSAFVRDH------KVRLAVVAAVASIALVVFGVLG 186 (226)
Q Consensus 146 sf~iggliPllpy~~~~~~------~~a~~~si~~t~~~L~~lG~~~ 186 (226)
.|++-+++-++-|+|..+. +.-..+.+.+.++.|+.++++|
T Consensus 2 fYLIi~ILi~~~YiF~aPksIr~Tln~i~~v~~~vlLivla~ls~~k 48 (81)
T PF11364_consen 2 FYLIIAILILLYYIFMAPKSIRGTLNMIGLVGLVVLLIVLAVLSFIK 48 (81)
T ss_pred hHHHHHHHHHHHHHHHCcHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888887542 2223333444444555555544
No 51
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=29.28 E-value=4.3e+02 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHhHhhc
Q 043274 135 NPAQAAIASALAFSVGAVVPLLGSAFV 161 (226)
Q Consensus 135 ~P~~~al~t~~sf~iggliPllpy~~~ 161 (226)
+|.+..+.-..-.++|+++--.|+.+.
T Consensus 135 ~~~~~~~~Dl~q~~vGA~~lA~p~apT 161 (267)
T PF09622_consen 135 KPERGYLADLGQMIVGALFLAFPFAPT 161 (267)
T ss_pred ccccccHHHHHHHHHHHHHHhcCcCcc
Confidence 444555555555666666666665443
No 52
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.93 E-value=4.9e+02 Score=24.39 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=48.8
Q ss_pred HHhhhhhchhhhhhchhhHHHHHHHHHHHHhhcCcCCCCCchhhhhhcccCCChHHHHHHHHHHHHHhhHHHHHhHhhcc
Q 043274 83 GAGSMAIGEFVSVCTQRDIEIAQMKRDQQKKITSNENHEEPDENIQREEALPNPAQAAIASALAFSVGAVVPLLGSAFVR 162 (226)
Q Consensus 83 galSMa~G~YlS~kse~d~~~ae~~re~~~~e~~~~~e~~~~~~~~~~~~~~~P~~~al~t~~sf~iggliPllpy~~~~ 162 (226)
-.+||..|+|+.--.=.|.+.++ +|+ +++-+|++.++...+.|+-.|+--=++.+...
T Consensus 241 ~gls~ilGAFlaGl~ls~~~~~~-----~~l-----------------~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~ 298 (397)
T COG0475 241 LGLSMILGAFLAGLLLSESEYRK-----HEL-----------------EEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN 298 (397)
T ss_pred hChhHHHHHHHHHHHhcccccch-----HHH-----------------HHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc
Confidence 46899999998755433321111 111 23447888888888888877776555555433
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043274 163 DHKVRLAVVAAVASIALVVFGVLGALLGK 191 (226)
Q Consensus 163 ~~~~a~~~si~~t~~~L~~lG~~~a~~s~ 191 (226)
. .. ......+..+.=++..++.+|..+
T Consensus 299 ~-~~-~l~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 299 L-LL-ILLLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred H-HH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 11 122233333444555677777777
No 53
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.67 E-value=4.6e+02 Score=23.62 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHHHHHHHH
Q 043274 145 LAFSVGAVVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTP-IVKSSARVLVGGWMAMAITFGLT 216 (226)
Q Consensus 145 ~sf~iggliPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~-~~~s~l~~l~~G~~aa~i~~~iG 216 (226)
.+|.+-..--++.+...-...-...++-.-+.+-|+++||+..++.+-+ ++-..+-.+++. ...+|...
T Consensus 13 ~a~~lv~iai~is~~egl~lEk~il~a~~RtvvQLli~GfvL~yIf~~~~~~~~ll~v~vm~---~~Aa~~~~ 82 (256)
T COG0390 13 LAYLLVVVAILISHKEGLGLEKDILVASIRTVVQLLILGFVLSYIFALDNPALTLLMVLVML---TIAAYNAR 82 (256)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH---HHHHHHHH
Confidence 3343333333444444333233456777888899999999999876644 555444433333 34444444
No 54
>COG4709 Predicted membrane protein [Function unknown]
Probab=27.21 E-value=4.1e+02 Score=22.94 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043274 171 VAAVASIALVVFGVLGAL 188 (226)
Q Consensus 171 si~~t~~~L~~lG~~~a~ 188 (226)
+++++..+++.-|.+.+.
T Consensus 116 t~if~~~a~~~agil~g~ 133 (195)
T COG4709 116 TLIFSGWALVAAGILGGV 133 (195)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 444444444444444443
No 55
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=26.89 E-value=5.5e+02 Score=24.35 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=44.6
Q ss_pred cCCChHHHHHHHHHHHHHhh--HHHHHhHhhccc---hhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 043274 132 ALPNPAQAAIASALAFSVGA--VVPLLGSAFVRD---HKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGW 206 (226)
Q Consensus 132 ~~~~P~~~al~t~~sf~igg--liPllpy~~~~~---~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~ 206 (226)
...+||.+....++||-+-+ +.|++|++.... ....+.-|| --+.|.+.-.+.+.+...+--.--++..++++
T Consensus 351 t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsI--qNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 351 TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSI--QNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHH--HhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 34599999999999997654 699999987642 123333333 33455555556666543332223344444444
Q ss_pred HHH
Q 043274 207 MAM 209 (226)
Q Consensus 207 ~aa 209 (226)
+.+
T Consensus 429 ~~~ 431 (459)
T KOG4686|consen 429 GLM 431 (459)
T ss_pred HHH
Confidence 433
No 56
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.77 E-value=3.2e+02 Score=21.59 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 043274 136 PAQAAIASALAFSVGAVVPLLGSAFVR-DHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWMAMAITFG 214 (226)
Q Consensus 136 P~~~al~t~~sf~iggliPllpy~~~~-~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i~~~ 214 (226)
+.+.-.+-+..++..|++-++.+-... +....+.+ ..+.+.++..+.+.....+.+.....+-.+...+ ..+.-..
T Consensus 32 ~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~ga~ial 108 (145)
T PF09925_consen 32 LARILLYLGALLLGLGIILFVAANWDDIPRLAKLGL--LLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVL-FGALIAL 108 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-HHHHHHH
Confidence 445555555666666666555553321 12233332 2222333333333332345555555555433333 3333444
Q ss_pred HHHHHh
Q 043274 215 LTKLIG 220 (226)
Q Consensus 215 iG~ll~ 220 (226)
+|+.+.
T Consensus 109 igQ~y~ 114 (145)
T PF09925_consen 109 IGQIYQ 114 (145)
T ss_pred HHhHhc
Confidence 555554
No 57
>COG2056 Predicted permease [General function prediction only]
Probab=26.33 E-value=4.8e+02 Score=25.07 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=18.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043274 191 KTPIVKSSARVLVGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 191 ~~~~~~s~l~~l~~G~~aa~i~~~iG~ll~ 220 (226)
+++-.-+.+-|+++|++ +|.++|.-|+
T Consensus 332 g~sK~l~a~lMlvvGLl---ITMGIGsSF~ 358 (444)
T COG2056 332 GQSKLLAALLMLVVGLL---ITMGIGSSFG 358 (444)
T ss_pred cccHHHHHHHHHHHHHH---Hhcccccccc
Confidence 56666778888888865 6666666554
No 58
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.93 E-value=1.6e+02 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHh
Q 043274 207 MAMAITFGLTKLIG 220 (226)
Q Consensus 207 ~aa~i~~~iG~ll~ 220 (226)
+.++++|.+|+.++
T Consensus 37 ~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 37 LFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHhc
Confidence 44567777777665
No 59
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=25.66 E-value=6.1e+02 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 043274 174 VASIALVVFGVLGALLGKTPIVKSSARV 201 (226)
Q Consensus 174 ~t~~~L~~lG~~~a~~s~~~~~~s~l~~ 201 (226)
.....+|.-|.+.+.++++.+..+..+.
T Consensus 289 ~vvs~i~AAGif~Gil~gtgMvdama~s 316 (433)
T COG2851 289 MVVSLIFAAGIFLGILSGTGMVDAMAKS 316 (433)
T ss_pred HHHHHHHHHHHHhhhhCCCchHHHHHHH
Confidence 3344567789999999999988766654
No 60
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=25.58 E-value=95 Score=24.41 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhhchhhhh
Q 043274 50 DGLVSVASLMMGVGAVKTDIKAMLLAGFAGLVAGAGSMAIGEFVSV 95 (226)
Q Consensus 50 DGlvt~~~lv~G~~ga~~~~~~Vl~aGla~liAgalSMa~G~YlS~ 95 (226)
|-|=.++++..|.+ +.-.++++|+++|...++++.|+..
T Consensus 23 d~Id~~lg~~~giS-------tmAAAalGN~vSDv~Gi~~~~~vE~ 61 (111)
T PF10507_consen 23 DYIDNTLGVTFGIS-------TMAAAALGNLVSDVAGIGLGGYVER 61 (111)
T ss_pred hHHHHHHHHHHhHH-------HHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 34445555555553 3445899999999999999999843
No 61
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=25.02 E-value=4.9e+02 Score=23.06 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=25.7
Q ss_pred HhhHHHH-HhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCC-Cchh
Q 043274 149 VGAVVPL-LGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGK-TPIV 195 (226)
Q Consensus 149 iggliPl-lpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~-~~~~ 195 (226)
+.-++|+ +.|..-.+....+.++.+=+.+-|+++|++..++-+ .++|
T Consensus 11 ~lv~~~~~i~~~~~lgl~k~l~iA~~R~~vQL~~vG~vL~~iF~~~~~~ 59 (248)
T TIGR00245 11 IFVIIAILLSYREKLGLEKDILWASIRAIIQLIIVGYVLLYIFSFDMPG 59 (248)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3334444 344433333344556666677777777877776543 3344
No 62
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=25.01 E-value=2.6e+02 Score=22.56 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043274 203 VGGWMAMAITFGLTKLIG 220 (226)
Q Consensus 203 ~~G~~aa~i~~~iG~ll~ 220 (226)
.=.+++.++-|.++..+.
T Consensus 64 aD~~La~~~iW~~~~~~~ 81 (136)
T PF10710_consen 64 ADFGLAFLVIWLMGYILT 81 (136)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334445555555555554
No 63
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=24.18 E-value=4.9e+02 Score=22.79 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHHhHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043274 152 VVPLLGSAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTP--IVKSSARVLVGGWMAMAITFGLTKLIGTG 222 (226)
Q Consensus 152 liPllpy~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~--~~~s~l~~l~~G~~aa~i~~~iG~ll~~~ 222 (226)
+-|+++.............++..|......++.+ ++.++++ ..++.+-+.++|++. +..+...++..
T Consensus 101 L~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~-g~~tk~Dls~l~~~l~~aligLii---asvvn~Fl~s~ 169 (233)
T COG0670 101 LSPILLVYAAISGGDAIAAAFGITALVFGALSLY-GYTTKRDLSSLGSFLFMALIGLII---ASLVNIFLGSS 169 (233)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHcCc
Confidence 4456655554332223333444444444444433 3333333 345555565555543 33444444443
No 64
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.57 E-value=4.1e+02 Score=21.71 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhH
Q 043274 139 AAIASALAFSVGAV 152 (226)
Q Consensus 139 ~al~t~~sf~iggl 152 (226)
.++...++..+..+
T Consensus 80 ~~i~~~i~l~~~~~ 93 (181)
T PF08006_consen 80 RAILAIIGLGLLSF 93 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 65
>PRK10132 hypothetical protein; Provisional
Probab=23.22 E-value=82 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCChHHH-HHHHHHHHHHhhHH
Q 043274 133 LPNPAQA-AIASALAFSVGAVV 153 (226)
Q Consensus 133 ~~~P~~~-al~t~~sf~iggli 153 (226)
..|||++ |+..+++|++|.++
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHH
Confidence 4599995 67777888887764
No 66
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=22.56 E-value=1.7e+02 Score=21.58 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 043274 179 LVVFGVLG 186 (226)
Q Consensus 179 L~~lG~~~ 186 (226)
.+++|++.
T Consensus 19 ~~lvG~~~ 26 (90)
T PF11808_consen 19 AALVGWLF 26 (90)
T ss_pred HHHHHHHH
Confidence 33444444
No 67
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=22.51 E-value=6.8e+02 Score=23.82 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHHHhhHHHHHhH-hhccchhhHHHHHHHHHHHHHHHHHH----HHHHhCCCchhHHHHHHHH
Q 043274 133 LPNPAQAAIASALAFSVGAVVPLLGS-AFVRDHKVRLAVVAAVASIALVVFGV----LGALLGKTPIVKSSARVLV 203 (226)
Q Consensus 133 ~~~P~~~al~t~~sf~iggliPllpy-~~~~~~~~a~~~si~~t~~~L~~lG~----~~a~~s~~~~~~s~l~~l~ 203 (226)
..+.|+++++.++.|+++|+.--.-- ++..-+. .++..+..|.++|. +.+-+++..+..+.+-+.+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~-----~li~~lAGLALlg~l~~sl~~A~~~~~~r~aAlvtFl 351 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPP-----ALIAALAGLALLGTLGGSLQTAFSDEKYREAALVTFL 351 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 44669999999999999998643322 2221111 12222223334444 4445566666655555433
No 68
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.29 E-value=7.9e+02 Score=24.53 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=11.3
Q ss_pred HHhhhhhchhhhhhc
Q 043274 83 GAGSMAIGEFVSVCT 97 (226)
Q Consensus 83 galSMa~G~YlS~ks 97 (226)
-++||.+|+|+.--.
T Consensus 238 ~Gls~~lGAFlAGl~ 252 (621)
T PRK03562 238 VGLSMALGAFLAGVL 252 (621)
T ss_pred hCccHHHHHHHHHHH
Confidence 368999999987533
No 69
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=21.87 E-value=80 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.534 Sum_probs=17.9
Q ss_pred HhhHHHHHHHHhcchhHHHHHH
Q 043274 36 QRAQWLRAAVLGANDGLVSVAS 57 (226)
Q Consensus 36 ~~~~~lr~~V~G~~DGlvt~~~ 57 (226)
+...+++..|||...||+|++-
T Consensus 37 rGe~Fi~vsIlGFlEGiLttLk 58 (97)
T PF11505_consen 37 RGEEFIKVSILGFLEGILTTLK 58 (97)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999864
No 70
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=21.85 E-value=3.8e+02 Score=20.68 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 043274 181 VFGVLGALLGKTPIVKSSARVLVGGWMAMAI 211 (226)
Q Consensus 181 ~lG~~~a~~s~~~~~~s~l~~l~~G~~aa~i 211 (226)
++-+...++.+.+|.|..++-++.|.++-.+
T Consensus 32 ~mA~LR~~Y~g~~~~~~llea~mCg~la~~~ 62 (107)
T TIGR01594 32 AIAYLRIRYMGGKFKRKLIDALMCAAIALVA 62 (107)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 3455677788888999999988888766443
No 71
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.74 E-value=4.5e+02 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=9.9
Q ss_pred CCChHHHHHHHHHHHH
Q 043274 133 LPNPAQAAIASALAFS 148 (226)
Q Consensus 133 ~~~P~~~al~t~~sf~ 148 (226)
..+||...+..+++-.
T Consensus 100 ~y~~~~~~l~~~l~~~ 115 (193)
T PF06738_consen 100 RYPPWLVILAAGLASA 115 (193)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4577777666665544
No 72
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=21.73 E-value=2.5e+02 Score=28.86 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=44.3
Q ss_pred cccccccccchhhhccccchHHhhHHH-HHHHHhcchh-------------HHHHHHHHHHhh-cc---c------cchH
Q 043274 15 LEMTIHVNDTAEKIGDEFDYAQRAQWL-RAAVLGANDG-------------LVSVASLMMGVG-AV---K------TDIK 70 (226)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-r~~V~G~~DG-------------lvt~~~lv~G~~-ga---~------~~~~ 70 (226)
|.-|-|+|+--.++++-. .+|.+-- -+=-||++|| +++..=++.|+. |- + .+..
T Consensus 164 MaIDADL~aG~I~~~eAr--~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~iNiiGGl~iGv~q~gm~~~eA~~~y 241 (697)
T PRK06012 164 MAIDADLNAGLIDEEEAK--KRRKELQQEADFYGAMDGASKFVKGDAIAGILITVINIIGGLIIGVVQHGMSFGEAAETY 241 (697)
T ss_pred chHHHHhhcCCCCHHHHH--HHHHHHHHHHhhccccCCccccccccHHHHHHHHHHHHHhhhheeehccCCCHHHHHhhh
Confidence 334455565555543332 2222222 2446899998 456666666664 31 1 2344
Q ss_pred HHHHHH--HHHHH-HHHhhhhhchhhhhhch
Q 043274 71 AMLLAG--FAGLV-AGAGSMAIGEFVSVCTQ 98 (226)
Q Consensus 71 ~Vl~aG--la~li-AgalSMa~G~YlS~kse 98 (226)
+++..| +-.-| |--+|++.|-.++-.+.
T Consensus 242 tlLTIGDGLVsQIPaLliS~aagiiVTR~~~ 272 (697)
T PRK06012 242 TLLTIGDGLVSQIPALLISTAAGIIVTRVSS 272 (697)
T ss_pred heeeechhHHHHHHHHHHHHHHheEEEecCC
Confidence 555544 22222 77889999998865443
No 73
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=21.71 E-value=5.4e+02 Score=24.13 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.8
Q ss_pred HHHHHHHHHhCC
Q 043274 180 VVFGVLGALLGK 191 (226)
Q Consensus 180 ~~lG~~~a~~s~ 191 (226)
.+.|.+..|+.+
T Consensus 313 ~~~g~l~~r~g~ 324 (495)
T PRK14995 313 PIAGILVSRLGL 324 (495)
T ss_pred HHHHHHHHHcCc
Confidence 344555555544
No 74
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=21.20 E-value=2.4e+02 Score=28.84 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=41.6
Q ss_pred cccccccccchhhhccccchHHhhHHH-HHHHHhcchh-------------HHHHHHHHHHhh-c---cc------cchH
Q 043274 15 LEMTIHVNDTAEKIGDEFDYAQRAQWL-RAAVLGANDG-------------LVSVASLMMGVG-A---VK------TDIK 70 (226)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-r~~V~G~~DG-------------lvt~~~lv~G~~-g---a~------~~~~ 70 (226)
|.-|-|+|+--.++++-. .+|.+-= -+=-||++|| +++..=++.|+. | -+ .+..
T Consensus 143 MaIDADLnAGlI~~~eAr--~RR~~l~~Ea~FyGAMDGAsKFVKGDAIAGiiI~~INiiGGl~IGv~q~gms~~eA~~~Y 220 (677)
T TIGR01399 143 MSIDADLRAGVIDADEAR--RRRSTLEKESQLYGAMDGAMKFVKGDAIAGIIIVLINIIGGISIGVTQHGMSASEALHLY 220 (677)
T ss_pred chHHHHhhcCCCCHHHHH--HHHHHHHHHHHhccCccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhhh
Confidence 334455555544443332 1222211 2446899998 344444444442 2 11 2344
Q ss_pred HHHHHHH--HHHH-HHHhhhhhchhhhhhch
Q 043274 71 AMLLAGF--AGLV-AGAGSMAIGEFVSVCTQ 98 (226)
Q Consensus 71 ~Vl~aGl--a~li-AgalSMa~G~YlS~kse 98 (226)
+++..|= -.-| |--+|++.|-.++-.+.
T Consensus 221 tlLTIGDGLVsQIPaLliS~AaGiiVTR~~~ 251 (677)
T TIGR01399 221 TVLTIGDGLVSQIPALLISVTAGIIVTRVPG 251 (677)
T ss_pred heeeechhHHHHHHHHHHHHHHheEEEecCC
Confidence 4555442 2222 77899999999865443
No 75
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=21.16 E-value=5.7e+02 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHhH
Q 043274 135 NPAQAAIASALAFSVGAVVPLLGS 158 (226)
Q Consensus 135 ~P~~~al~t~~sf~iggliPllpy 158 (226)
.||.--....+.++++-++|++--
T Consensus 23 ~~~~~~~~~~~~~~~~~~~Pl~~~ 46 (296)
T PRK15050 23 RPLLWLLLPLLVLAPLVVYPLVRV 46 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355544444444555566666543
No 76
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=21.05 E-value=5.1e+02 Score=21.84 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=4.8
Q ss_pred HHHHHhHhh
Q 043274 152 VVPLLGSAF 160 (226)
Q Consensus 152 liPllpy~~ 160 (226)
++|++.|+.
T Consensus 7 ~~Pli~Ff~ 15 (178)
T TIGR00997 7 LLPLIVFFA 15 (178)
T ss_pred HHHHHHHHH
Confidence 455555544
No 77
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.65 E-value=4.3e+02 Score=20.84 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 043274 175 ASIALVVFGVLGALLGKT 192 (226)
Q Consensus 175 t~~~L~~lG~~~a~~s~~ 192 (226)
.++.+++-|-..+++.+.
T Consensus 62 ~~~~v~~gg~~l~rlKRG 79 (121)
T PF11990_consen 62 PILGVFVGGKLLARLKRG 79 (121)
T ss_pred HHHHHHHhHHHHHHHHcC
Confidence 334455556677776543
Done!