Query 043274
Match_columns 226
No_of_seqs 118 out of 1053
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 47.7 36 0.0012 23.9 5.2 22 96-117 41-62 (79)
2 3arc_I Photosystem II reaction 34.4 36 0.0012 20.8 2.9 26 168-193 7-32 (38)
3 4dve_A Biotin transporter BIOY 31.9 2E+02 0.007 23.4 8.1 76 137-217 64-148 (198)
4 2hjm_A Hypothetical protein PF 20.6 50 0.0017 24.3 2.0 21 37-57 44-64 (103)
5 2h3o_A MERF; membrane protein, 18.4 29 0.00099 23.5 0.3 22 139-160 23-44 (61)
6 2h88_D Succinate dehydrogenase 11.2 4.6E+02 0.016 18.9 9.0 14 149-162 17-30 (103)
7 1y8x_B Ubiquitin-activating en 10.6 47 0.0016 24.2 -0.4 19 1-19 50-68 (98)
8 1ytz_T Troponin T; muscle, THI 9.6 1.8E+02 0.0063 21.4 2.6 23 85-108 1-23 (107)
9 3d31_C Sulfate/molybdate ABC t 7.9 8.6E+02 0.029 19.7 7.9 10 147-156 48-57 (295)
10 4f4c_A Multidrug resistance pr 7.5 1.5E+03 0.05 23.3 9.2 17 144-160 82-98 (1321)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.75 E-value=36 Score=23.90 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=9.4
Q ss_pred hchhhHHHHHHHHHHHHhhcCc
Q 043274 96 CTQRDIEIAQMKRDQQKKITSN 117 (226)
Q Consensus 96 kse~d~~~ae~~re~~~~e~~~ 117 (226)
+-|....+.|+++++|+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 3333333444444445444444
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=34.36 E-value=36 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 043274 168 LAVVAAVASIALVVFGVLGALLGKTP 193 (226)
Q Consensus 168 ~~~si~~t~~~L~~lG~~~a~~s~~~ 193 (226)
+..++++-++.||++|+...-=++.|
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnDP~RNP 32 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGDPARNP 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGCSS
T ss_pred eehhHHHHHHHHHHccccCCCCCCCC
Confidence 34466777788999999876555433
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=31.86 E-value=2e+02 Score=23.36 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhHH--HHHh-------HhhccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 043274 137 AQAAIASALAFSVGAVV--PLLG-------SAFVRDHKVRLAVVAAVASIALVVFGVLGALLGKTPIVKSSARVLVGGWM 207 (226)
Q Consensus 137 ~~~al~t~~sf~iggli--Pllp-------y~~~~~~~~a~~~si~~t~~~L~~lG~~~a~~s~~~~~~s~l~~l~~G~~ 207 (226)
++.|..+-+.|++-|++ |+.. |++.+ ...+.+.+.++ -++.|++..|..+.+..+.....++.-++
T Consensus 64 ~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gP--TgGYLiGF~~a---A~v~G~l~~~~~~~~~~~~~~~~~~~~l~ 138 (198)
T 4dve_A 64 PKYGTISVGAFLALALIGLPVLTGGNGGAASFLGP--SGGYRIAWLFT---PFLIGFFLKKLKITTSQNWFGELIIVLLF 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGST--THHHHHHHHHH---HHHHHHHHHHTTGGGSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcc--hhHHHHHHHHH---HHHHHHHHHHccccchhhHHHHHHHHHHH
Confidence 56677777777666654 4432 22322 34444444443 24667777775433322222223333333
Q ss_pred HHHHHHHHHH
Q 043274 208 AMAITFGLTK 217 (226)
Q Consensus 208 aa~i~~~iG~ 217 (226)
...+.|.+|.
T Consensus 139 G~~~iy~~G~ 148 (198)
T 4dve_A 139 GVIFVDFVGA 148 (198)
T ss_dssp HTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555553
No 4
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=20.55 E-value=50 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=17.9
Q ss_pred hhHHHHHHHHhcchhHHHHHH
Q 043274 37 RAQWLRAAVLGANDGLVSVAS 57 (226)
Q Consensus 37 ~~~~lr~~V~G~~DGlvt~~~ 57 (226)
.-.+++..|||...|++|++=
T Consensus 44 Ge~Fv~vsIlGFlEGiLttLK 64 (103)
T 2hjm_A 44 GEAFAKASIYGFLEGILTTLK 64 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999863
No 5
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=18.45 E-value=29 Score=23.47 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhHHHHHhHhh
Q 043274 139 AAIASALAFSVGAVVPLLGSAF 160 (226)
Q Consensus 139 ~al~t~~sf~iggliPllpy~~ 160 (226)
.|+.+..+++=..++|.+||++
T Consensus 23 ~Glsa~~~wLd~vl~P~l~~fi 44 (61)
T 2h3o_A 23 VGLSALTGYLDYVLLPALAIFI 44 (61)
T ss_dssp HHHHHHHHHSSSSCCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777779999977
No 6
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=11.18 E-value=4.6e+02 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=10.4
Q ss_pred HhhHHHHHhHhhcc
Q 043274 149 VGAVVPLLGSAFVR 162 (226)
Q Consensus 149 iggliPllpy~~~~ 162 (226)
--+++|++|+++..
T Consensus 17 avallpL~p~~~~~ 30 (103)
T 2h88_D 17 SALLLGLLPAAYLY 30 (103)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc
Confidence 45788999987653
No 7
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=10.56 E-value=47 Score=24.24 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.2
Q ss_pred CCCchhhhhcccccccccc
Q 043274 1 MAAPRALEQTSSHNLEMTI 19 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (226)
|.+|.+|||-.|.||....
T Consensus 50 mq~pp~Lee~Tr~NL~k~l 68 (98)
T 1y8x_B 50 MQSVTSIEERTRPNLSKTL 68 (98)
T ss_dssp CSSCHHHHHHHHHHHHSBS
T ss_pred EeCcHHHHHHhHhhhhCCH
Confidence 6789999999999997653
No 8
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=9.64 E-value=1.8e+02 Score=21.45 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=11.2
Q ss_pred hhhhhchhhhhhchhhHHHHHHHH
Q 043274 85 GSMAIGEFVSVCTQRDIEIAQMKR 108 (226)
Q Consensus 85 lSMa~G~YlS~kse~d~~~ae~~r 108 (226)
++|-+|.|+ .+.|.-.-+.+.++
T Consensus 1 m~~~~g~~~-~k~e~~~~k~q~e~ 23 (107)
T 1ytz_T 1 MGASYSSYL-AKADQKRGKKQTAR 23 (107)
T ss_dssp ---CCTTHH-HHHHHHHHHHHHHH
T ss_pred CCcchhhHH-HHHHhcccHHHHHH
Confidence 367789999 34554433333333
No 9
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=7.89 E-value=8.6e+02 Score=19.73 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=4.5
Q ss_pred HHHhhHHHHH
Q 043274 147 FSVGAVVPLL 156 (226)
Q Consensus 147 f~iggliPll 156 (226)
++++-+.|++
T Consensus 48 ~~~~~~~P~~ 57 (295)
T 3d31_C 48 LFLFIFLTLS 57 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444544
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=7.52 E-value=1.5e+03 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.5
Q ss_pred HHHHHHhhHHHHHhHhh
Q 043274 144 ALAFSVGAVVPLLGSAF 160 (226)
Q Consensus 144 ~~sf~iggliPllpy~~ 160 (226)
..+.+-|...|+++++|
T Consensus 82 ~~a~~~G~~~p~~~~~~ 98 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQ 98 (1321)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455577889888765
Done!