Query 043274
Match_columns 226
No_of_seqs 118 out of 1053
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 05:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043274.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043274hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 35.3 14 0.001 20.7 2.5 23 169-191 8-30 (35)
2 d1pv7a_ f.38.1.2 (A:) Lactose 15.4 2E+02 0.015 20.9 10.3 63 135-197 8-78 (417)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 15.4 1.7E+02 0.012 24.0 7.0 23 78-100 408-430 (444)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.8 2.7E+02 0.02 21.0 9.5 22 175-196 298-319 (447)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 11.7 2.6E+02 0.019 20.1 7.0 20 137-156 144-163 (199)
6 d2e74d2 f.23.12.1 (D:12-45) IS 10.5 1E+02 0.0076 16.6 2.6 16 146-161 18-33 (34)
7 d2onkc1 f.58.1.1 (C:1-252) Mol 8.3 3.6E+02 0.026 19.4 7.1 42 181-222 67-113 (252)
8 d1y8xb1 c.111.1.2 (B:349-440) 8.2 33 0.0024 23.2 -0.3 20 1-20 46-65 (92)
9 d2ahme1 d.302.1.1 (E:43-197) N 7.7 77 0.0056 23.2 1.6 23 131-153 36-58 (155)
10 d1a87a_ f.1.1.1 (A:) Colicin N 7.3 2.3E+02 0.017 22.6 4.6 19 170-188 236-254 (297)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.26 E-value=14 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 043274 169 AVVAAVASIALVVFGVLGALLGK 191 (226)
Q Consensus 169 ~~si~~t~~~L~~lG~~~a~~s~ 191 (226)
..++++-++.||++|+..+-=++
T Consensus 8 Vy~vV~fFv~lFiFGFLSnDP~R 30 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTC
T ss_pred hhhHHHHHHHHHHHhhccCCCCC
Confidence 34566667889999987654443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.44 E-value=2e+02 Score=20.92 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHH-hhHHHHHhHhhcc----c-hhhHHHHHH--HHHHHHHHHHHHHHHHhCCCchhHH
Q 043274 135 NPAQAAIASALAFSV-GAVVPLLGSAFVR----D-HKVRLAVVA--AVASIALVVFGVLGALLGKTPIVKS 197 (226)
Q Consensus 135 ~P~~~al~t~~sf~i-ggliPllpy~~~~----~-~~~a~~~si--~~t~~~L~~lG~~~a~~s~~~~~~s 197 (226)
|=|.-++..++.++. +...|.+|.++.. + ....++.++ +...+.-...|.+.=|+++++...-
T Consensus 8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~ 78 (417)
T d1pv7a_ 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 447777777776655 4467888865432 1 122233222 2333445677888888887776543
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=15.37 E-value=1.7e+02 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhchhhhhhchhh
Q 043274 78 AGLVAGAGSMAIGEFVSVCTQRD 100 (226)
Q Consensus 78 a~liAgalSMa~G~YlS~kse~d 100 (226)
.-++|..+|+.+++++..++=+|
T Consensus 408 p~~ia~~~a~~v~~~~~~~siY~ 430 (444)
T d1otsa_ 408 PMIITGLGATLLAQFTGGKPLYS 430 (444)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChHH
Confidence 45567888888888888777655
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.79 E-value=2.7e+02 Score=20.96 Aligned_cols=22 Identities=5% Similarity=-0.087 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhCCCchhH
Q 043274 175 ASIALVVFGVLGALLGKTPIVK 196 (226)
Q Consensus 175 t~~~L~~lG~~~a~~s~~~~~~ 196 (226)
..+.-++.|++..|..+.....
T Consensus 298 ~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 298 GIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHH
T ss_pred hhhhhhhhhhhhhhcccccccc
Confidence 3344455566666776655443
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.73 E-value=2.6e+02 Score=20.13 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 043274 137 AQAAIASALAFSVGAVVPLL 156 (226)
Q Consensus 137 ~~~al~t~~sf~iggliPll 156 (226)
+.+++++.++|....+.|..
T Consensus 144 ~~s~lTt~~~f~~l~~~~~~ 163 (199)
T d1iwga7 144 VGIAMVLSAVFVPMAFFGGS 163 (199)
T ss_dssp HHHHHHHHHHHTTTTCCCTT
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 44556666666555544443
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.48 E-value=1e+02 Score=16.57 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.6
Q ss_pred HHHHhhHHHHHhHhhc
Q 043274 146 AFSVGAVVPLLGSAFV 161 (226)
Q Consensus 146 sf~iggliPllpy~~~ 161 (226)
.-.+|++-|++-||..
T Consensus 18 g~alg~lypvvkyfip 33 (34)
T d2e74d2 18 GVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHhhhhhHHhhcCC
Confidence 3468999999999764
No 7
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.29 E-value=3.6e+02 Score=19.41 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=18.0
Q ss_pred HHHHHHHHh-CC-CchhHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Q 043274 181 VFGVLGALL-GK-TPIVKSSARVLVGGWM---AMAITFGLTKLIGTG 222 (226)
Q Consensus 181 ~lG~~~a~~-s~-~~~~~s~l~~l~~G~~---aa~i~~~iG~ll~~~ 222 (226)
++|...+.. .+ +.+.|+.++.+..-.. ....++....+++..
T Consensus 67 i~g~~la~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~ 113 (252)
T d2onkc1 67 IFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSS 113 (252)
T ss_dssp HHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhccCChHHHHHHHhhhcccc
Confidence 345555532 22 2344566665444332 223444444444443
No 8
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=33 Score=23.22 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.0
Q ss_pred CCCchhhhhccccccccccc
Q 043274 1 MAAPRALEQTSSHNLEMTIH 20 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (226)
|.+|.+||+..|.||.....
T Consensus 46 m~~pp~Lee~Tr~NL~k~L~ 65 (92)
T d1y8xb1 46 MQSVTSIEERTRPNLSKTLK 65 (92)
T ss_dssp CSSCHHHHHHHHHHHHSBSG
T ss_pred ecCcHHHHHHhhhccccCHH
Confidence 67899999999999987654
No 9
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=7.75 E-value=77 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=12.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhHH
Q 043274 131 EALPNPAQAAIASALAFSVGAVV 153 (226)
Q Consensus 131 ~~~~~P~~~al~t~~sf~iggli 153 (226)
+++.+--++=+++++=.++|+++
T Consensus 36 eARa~drksKvvSamhtlLF~Ml 58 (155)
T d2ahme1 36 QARSEDKRAKVTSAMQTMLFTML 58 (155)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444455556666666666654
No 10
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=7.34 E-value=2.3e+02 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043274 170 VVAAVASIALVVFGVLGAL 188 (226)
Q Consensus 170 ~si~~t~~~L~~lG~~~a~ 188 (226)
++.+.+.+++++|++..+.
T Consensus 236 ag~~As~vva~~FS~il~~ 254 (297)
T d1a87a_ 236 IGGVVAGVAISLFGAVLSF 254 (297)
T ss_dssp HTTCCHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
Done!