BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043276
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 131/572 (22%), Positives = 226/572 (39%), Gaps = 74/572 (12%)
Query: 147 LENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSN 206
+ F RW +E P A + L YDA + A + + +
Sbjct: 246 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGD 305
Query: 207 ATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-VDGQLQSSAFEIINVN-NGARGVGF 264
A Q G ++ +AL ++ GL+G+ F +G+ + I+ + NG R +G+
Sbjct: 306 CLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGY 364
Query: 265 WSPEKGXXXXXXXXXXXXXXXRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFV 324
WS ++ D TS E+K V + + +
Sbjct: 365 WSE-----------------VDKMVLTEDDTSGL--------EQKTVVVTTILESPYVMM 399
Query: 325 KVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQV 381
K GY +D+ + + + V Y D + +N ++ ++
Sbjct: 400 KANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGEL 458
Query: 382 FLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWV 441
G+ D + TI R +DF+ P+ G+S+++ K + FL PL +++W+
Sbjct: 459 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWM 518
Query: 442 TSGCFFIFIGF-VVWVLEHRVN------EDFRGPARHQ---------VGTSFWFSFSTMV 485
F +IG VV L R + E+F Q + S WFS
Sbjct: 519 C--IVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLG--A 574
Query: 486 FSQRERVISNLA---RFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRG 542
F Q+ IS + R V VW F LI+I SYTA+L + LTV+++ I L K+
Sbjct: 575 FMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQT 634
Query: 543 DNVGYQKGSFVLGILKQLGFDERKLVVYN---SHEECDE--LFQKGSANGGIAAAFDEIP 597
+ + Y G+ G K+ F K+ V++ ++ E +F + +A G +
Sbjct: 635 E-IAY--GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK 690
Query: 598 YAKLL-------IGQHCSKYTM-VEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKM 649
YA LL I Q TM V + G+G A P S L V+ A+L ++E +
Sbjct: 691 YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLL 750
Query: 650 KEIEDAWFKKHSSC--PDAGTVVSARSLGLNS 679
++++ W+ C D+G+ +L L++
Sbjct: 751 DKLKNKWWYDKGECGAKDSGSKEKTSALSLSN 782
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 330 PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAV 389
P+ ++ G+ ID+ K + + ++ V + G +N +I +VF D
Sbjct: 52 PRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMA 111
Query: 390 VGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+G TI RS VDF++P+ E+G+S++V
Sbjct: 112 IGSLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 304 PTNEKKLRVGVPVKKGFSDFVKV---TIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDF 360
P E +R VP +K FVK+ T + + G+ ID+ K + + +
Sbjct: 25 PLTETCVRNTVPCRK----FVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYL 80
Query: 361 VPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
V + + +N +I +V VG TI RS VDF++P+ E+G+S++V
Sbjct: 81 VTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 617 FKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF 657
F T G+G A SP + A+L +M+E+E W
Sbjct: 238 FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 330 PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT----SSGSYNDLIYQVFLGE 385
P+T GY ID+ + + E+L A+DF Y DG G + L+ + G
Sbjct: 59 PRTLRRCCYGYCIDLLERLAEDL----AFDFELYIVGDGKYGALRDGRWTGLVGDLLAGR 114
Query: 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSK 424
V +I RS VDFT P+ + + ++V + ++
Sbjct: 115 AHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRGTE 153
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658
I C T+ +P F G+G P +SPL ++S+ I + + D W+K
Sbjct: 232 IDADCKLLTVGKP-FAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYK 286
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 116/260 (44%), Gaps = 9/260 (3%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEK 69
GAI +++ + W + V +Y D + G ++ ++ +A + +V RSV + + +
Sbjct: 119 GAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSV-GNIKDVQEFRR 176
Query: 70 ELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD-GMTNLLRTLEPSVT 128
+ ++ Q + +++ + I E+ +G ++G +++ + G T++L LE V
Sbjct: 177 IIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL--LE-RVM 233
Query: 129 DSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAV 188
+ G + + ++ F RW R +E P +A L L +DA +A A
Sbjct: 234 HGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAF 293
Query: 189 EKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-VDGQLQS 247
+ + + A SQ G + +AL ++ +G+TG+ F G+ +
Sbjct: 294 RYLRRQRVDVSRRGSAGDCLANPAVPWSQ-GIDIERALKMVQVQGMTGNIQFDTYGRRTN 352
Query: 248 SAFEIINVN-NGARGVGFWS 266
++ + +G+R G+W+
Sbjct: 353 YTIDVYEMKVSGSRKAGYWN 372
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 105/283 (37%), Gaps = 38/283 (13%)
Query: 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLAT 63
+D+ Q A+ I+K + W ++ + YGE + + D + + I A
Sbjct: 181 SDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAG 240
Query: 64 DDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLR 121
+ +K L KL + + RV + +GL + + + +DG +
Sbjct: 241 EQSFDKLLKKLTSHLPKARVVACFCEGMTVRGLLMAMRRLGLAGE-FLLLGSDGWADRY- 298
Query: 122 TLEPSVTDSMQ----GVIGVRPYVPKTKALENFRVRWKRKFLQENP-------SLFDAEL 170
VTD Q G I ++ P K +++ ++ + + NP F L
Sbjct: 299 ----DVTDGYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRL 354
Query: 171 NIFGL--LAYDAT--SALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQ--------- 217
F Y+ T S+L + + GF + S A L +S
Sbjct: 355 EGFPQENSKYNKTCNSSLTLKTHHVQDSKMGFVINAIYSMAYGLHNMQMSLCPGYAGLCD 414
Query: 218 -----NGPKLLQALSSIRFRGLTGDYIFVDGQLQSSA-FEIIN 254
+G KLL++L F G++GD I D S +EI+N
Sbjct: 415 AMKPIDGRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMN 457
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 334 ETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDT 393
+ +VG+ IDV AV +E+ ++ ++ S++ LI + +FDAV+
Sbjct: 25 DNKIVGFDIDVANAVCKEMQAECSF-----------TNQSFDSLIPSLRFKKFDAVIAGM 73
Query: 394 TIVFNRSNYVDFTLPYTESGVSMIV 418
+ R V F+ PY E G+S +V
Sbjct: 74 DMTPKREQQVSFSQPYYE-GLSAVV 97
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
I Q T + + G+G P+ SP ++ AIL + E DK+ +++ W+ + S
Sbjct: 196 ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSG 254
Query: 663 CPD 665
CP+
Sbjct: 255 CPE 257
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGT-----SSGSYNDLIYQVFLGEFDAVVGDT 393
GY ID+ K EL + + + + DG G +N ++ ++ + D V
Sbjct: 34 GYCIDLLK----ELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPL 89
Query: 394 TIVFNRSNYVDFTLPYTESGVSMI 417
TI R +DF+ P+ GVS++
Sbjct: 90 TITHVREKAIDFSKPFMTLGVSIL 113
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 337 VVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIV 396
V G+ D+ KAV ++ P+ + LI + LG+FDA+ G I
Sbjct: 24 VEGFGADIVKAVCKQXQAVCTISNQPW-----------DSLIPSLKLGKFDALFGGXNIT 72
Query: 397 FNRSNYVDFTLPYTESGVSMI 417
R VDFT PY + VS I
Sbjct: 73 TARQKEVDFTDPYYTNSVSFI 93
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
I Q T + + G+G P+ SP ++ AIL + E DK+ +++ W+ + S
Sbjct: 198 ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSG 256
Query: 663 CP 664
CP
Sbjct: 257 CP 258
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ K + L ++ V Y D G +N ++ ++ + D V TI
Sbjct: 36 GYCIDLLKELAHILGFSYEIRLVEDGKYGAQD--DKGQWNGMVKELIDHKADLAVAPLTI 93
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ GVS++
Sbjct: 94 THVREKAIDFSKPFMTLGVSIL 115
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 118/310 (38%), Gaps = 56/310 (18%)
Query: 5 DSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATD 64
DS Q A+ I+KA GW + + YGE+ + S T + +SV P
Sbjct: 170 DSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERK 229
Query: 65 ------DQIEKELYKLFTMQTRVFILHMLPSLGSRIF---EKANEIGLMNKGCVWIMTDG 115
D+I K+L L T +R ++ +I ++A+++G +W+ +D
Sbjct: 230 DRTIDFDRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGHF----LWVGSDS 283
Query: 116 MTNLLRTLEPSVTDSMQGVIGVRPYVP---------KTKALENFRVR-WKRKFLQENPSL 165
+ + L D +G I ++P ++ LEN R W ++ +EN
Sbjct: 284 WGSKINPLHQH-EDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEEN--- 339
Query: 166 FDAELNIFGLLAYDATSALA--------VAVEKAGITGFGFDKTNVSSNA-----TDLEA 212
F+ +L I G D E+ G F D ++A DL A
Sbjct: 340 FNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA 399
Query: 213 --FGIS-----QNGPKLLQALSSIRFRGLTGDYIFVD------GQLQSSAFEIINVNN-G 258
G+ G KLL+ + + F G G + + G+ ++ N N G
Sbjct: 400 DYRGVCPEMEQAGGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPG 459
Query: 259 ARGVGFWSPE 268
R +G W+ E
Sbjct: 460 YRLIGQWTDE 469
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 120/310 (38%), Gaps = 56/310 (18%)
Query: 5 DSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATD 64
DS Q A+ I+KA GW + + YGE+ + S T + +SV P
Sbjct: 170 DSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERK 229
Query: 65 ------DQIEKELYKLFTMQTRVFILHMLPSLGSRIF---EKANEIGLMNKGCVWIMTDG 115
D+I K+L L T +R ++ +I ++A+++G +W+ +D
Sbjct: 230 DRTIDFDRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGHF----LWVGSDS 283
Query: 116 MTNLLRTLEPSVTDSMQGVIGVRPYVP---------KTKALENFRVR-WKRKFLQENPSL 165
+ + L D +G I ++P ++ LEN R W ++ +EN
Sbjct: 284 WGSKINPLHQH-EDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEEN--- 339
Query: 166 FDAELNIFGLLAYDATSALA--------VAVEKAGITGFGFDKTNVSSNA-----TDLEA 212
F+ +L I G D E+ G F D ++A DL A
Sbjct: 340 FNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA 399
Query: 213 --FGIS-----QNGPKLLQALSSIRFRGLTGDYIFVD------GQLQSSAFEIINVNN-G 258
G+ G KLL+ + ++ F G G + + G+ ++ N +N G
Sbjct: 400 DYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPG 459
Query: 259 ARGVGFWSPE 268
R +G W+ E
Sbjct: 460 YRLIGQWTDE 469
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 328 IDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFD 387
+D K Q VVG ID+ +A+ +EL V + + S S+++++ + G+ D
Sbjct: 31 VDGKNQ---VVGADIDMAQAIADEL--GVKLEIL---------SMSFDNVLTSLQTGKAD 76
Query: 388 AVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKK 425
V + R DF++PY E+ +S +V D +K
Sbjct: 77 LAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK 114
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 323 FVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT-----SSGSYNDL 377
FV V+ + + G+SIDV A+ L +++ Y PD G++N L
Sbjct: 15 FVXVSENVLGKPKKYQGFSIDVLDALSNYL----GFNYEIYVAPDHKYGSPQEDGTWNGL 70
Query: 378 IYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+ ++ D + TI +R N VDFT Y + V +++
Sbjct: 71 VGELVFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 323 FVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT-----SSGSYNDL 377
FV V+ + + G+SIDV A+ L +++ Y PD G++N L
Sbjct: 15 FVMVSENVLGKPKKYQGFSIDVLDALSNYL----GFNYEIYVAPDHKYGSPQEDGTWNGL 70
Query: 378 IYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+ ++ D + TI +R N VDFT Y + V +++
Sbjct: 71 VGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLL 111
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 607 CSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 663
CS YT V T G+G A SP S+ IL + + M ++ W+ K+ C
Sbjct: 208 CSFYT-VGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQC 263
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTS-SGSYNDLIYQVFLGEFDAVVGDTTIVF 397
GY +D+ K + L + VP + + G +N ++ ++ D V TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 398 NRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 663 CPD 665
CP+
Sbjct: 256 CPE 258
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTS-SGSYNDLIYQVFLGEFDAVVGDTTIVF 397
GY +D+ K + L + VP + + G +N ++ ++ D V TI +
Sbjct: 33 GYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 92
Query: 398 NRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ G+S++
Sbjct: 93 VREKVIDFSKPFMTLGISIL 112
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 196 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 254
Query: 663 CP 664
CP
Sbjct: 255 CP 256
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVP----YAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTT 394
GY +D+ K + L + VP AQ D G +N ++ ++ D V T
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 90
Query: 395 IVFNRSNYVDFTLPYTESGVSMI 417
I + R +DF+ P+ G+S++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISIL 113
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 663 CP 664
CP
Sbjct: 256 CP 257
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTS-SGSYNDLIYQVFLGEFDAVVGDTTIVF 397
GY +D+ K + L + VP + + G +N ++ ++ D V TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 398 NRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 663 CPD 665
CP+
Sbjct: 256 CPE 258
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTS-SGSYNDLIYQVFLGEFDAVVGDTTIVF 397
GY +D+ K + L + VP + + G +N ++ ++ D V TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 398 NRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 663 CP 664
CP
Sbjct: 256 CP 257
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 310 LRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT 369
LR+GV F+ V T + GY +D+ + + +++ + P
Sbjct: 10 LRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP------- 62
Query: 370 SSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+ SY L+ + G++D +GD T+ R V F+ +++ + +++
Sbjct: 63 PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM 111
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 333 QETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGD 392
+ + G S+DV++AV E + Y + + S+G I V GE D ++G
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEY-----VRQNSISAG-----ITAVAEGELDILIGP 72
Query: 393 TTIVFNRSNY--VDFTLPYTESGVSMIVP 419
++ R+ + FT PY SG+ +++P
Sbjct: 73 ISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 333 QETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGD 392
+ + G S+DV++AV E + Y + + S+G I V GE D ++G
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEY-----VRQNSISAG-----ITAVAEGELDILIGP 72
Query: 393 TTIVFNRSNY--VDFTLPYTESGVSMIVP 419
++ R+ + FT PY SG+ +++P
Sbjct: 73 ISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 231 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 289
Query: 662 SCPD 665
CP+
Sbjct: 290 GCPE 293
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 43 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 101
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 102 TYVREKVIDFSKPFMTLGISIL 123
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 196 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 254
Query: 662 SCPD 665
CP+
Sbjct: 255 GCPE 258
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D ++G +N ++ ++ + D V I
Sbjct: 33 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DANGQWNGMVRELIDHKADLAVAPLAI 91
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 92 TYVREKVIDFSKPFMTLGISIL 113
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 586 NGGIAAAFDEIPYAKLLIGQHCSKYTMV--EP-TFKTAGFGFAFPLHSPLVHDVSKAILN 642
NGG+ A + A + + +K V +P F + +G FP +S L V +A+ N
Sbjct: 187 NGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKN 246
Query: 643 VTEGDKMKEIEDAWFKKH 660
V K EI WF K
Sbjct: 247 VINSGKYTEIYKKWFGKE 264
>pdb|2XHY|A Chain A, Crystal Structure Of E.Coli Bgla
pdb|2XHY|B Chain B, Crystal Structure Of E.Coli Bgla
pdb|2XHY|C Chain C, Crystal Structure Of E.Coli Bgla
pdb|2XHY|D Chain D, Crystal Structure Of E.Coli Bgla
Length = 479
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 297 DPKGWEIPTNEKKLRVGVP---VKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELP 353
DP G E R P V+ GF + KV D + Y ID +A IEE+
Sbjct: 354 DPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSINDD----YRIDYLRAHIEEMK 409
Query: 354 YAVAYD------FVPYAQPDGTS--SGSYNDLIYQVFLGEFDAVVGDTT 394
AV YD + P+ D S +G Y+ +++ + D GD +
Sbjct: 410 KAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMS 458
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
+ R +DF+ P+ G+S+++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMI 115
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 151 RVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDL 210
RV WKR P A L YD +A A + + + +
Sbjct: 266 RVDWKR------PKYTSA-------LTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLAN 312
Query: 211 EAFGISQNGPKLLQALSSIRFRGLTGDYIFVD-GQLQSSAFEIINV-NNGARGVGFWSPE 268
A Q G + +AL +RF GLTG+ F + G+ + +I + ++G R +G+W+ +
Sbjct: 313 PAVPWGQ-GIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
+ R +DF+ P+ G+S+++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMI 115
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 64 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 183 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 64 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 182 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 227
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 330 PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT----SSGSYNDLIYQVFLGE 385
P + GY ID+ + + E++ +DF Y DG +G + L+ + G
Sbjct: 61 PIKFKKCCYGYCIDLLEQLAEDM----NFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGT 116
Query: 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+ V +I RS +DFT P+ + + ++V
Sbjct: 117 ANMAVTSFSINTARSQVIDFTSPFFSTSLGILV 149
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658
I C T+ +P F G+G P +SPL ++S+ I M + D W+K
Sbjct: 234 IDADCKLLTVGKP-FAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 288
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 609 KYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 663
K +V + +G P +SP +++A+LN+ E + + D WF +S
Sbjct: 173 KVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPKNSL 227
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV----PIKDSKKRNAW 429
+N ++ ++ G+ D + TI R +DF+ P+ G+S+++ PI+ ++ +
Sbjct: 68 WNGMVGELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQ 127
Query: 430 VFLQPLTWDLWVTSGCFF 447
+ T D T CFF
Sbjct: 128 TEIAYGTLDSGSTK-CFF 144
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G+ D + TI + R +DF+ P+ G+S+++
Sbjct: 71 WNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 63 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 121
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 122 TLVREEVIDFSKPFMSLGISIMI 144
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 602 LIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661
+ Q T + + G+G P SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 662 SCPD 665
CP+
Sbjct: 256 GCPE 259
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 35 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 93
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 94 TLVREEVIDFSKPFMSLGISIMI 116
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 619 TAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAG 667
+ G+G A P S L + V+ A+L + E + ++++ W+ C G
Sbjct: 218 SKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGG 266
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 32 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 90
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 50 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 108
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 109 TLVREEVIDFSKPFMSLGISIMI 131
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 33 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 91
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMI 114
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 32 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 90
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 33 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 91
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMI 114
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 47 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 105
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 106 TLVREEVIDFSKPFMSLGISIMI 128
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 613 VEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAG 667
V + G+G A P S L + V+ A+L + E + ++++ W+ C G
Sbjct: 224 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGG 278
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + V Y D + +N ++ ++ G+ D + TI
Sbjct: 46 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 104
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 105 TLVREEVIDFSKPFMSLGISIMI 127
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVP---YAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + VP Y D + +N ++ ++ G+ + + TI
Sbjct: 32 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 90
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVP---YAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + VP Y D + +N ++ ++ G+ + + TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 88
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFVP---YAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY +D+ + + + VP Y D + +N ++ ++ G+ + + TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 88
Query: 396 VFNRSNYVDFTLPYTESGVSMIV 418
R +DF+ P+ G+S+++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV----PIKDSK 424
+N ++ ++ G+ D + TI R +DF+ P+ G+S+++ PI+ ++
Sbjct: 68 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAE 122
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV----PIKDSK 424
+N ++ ++ G+ D + TI R +DF+ P+ G+S+++ PI+ ++
Sbjct: 69 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAE 123
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSV--ISPLATDDQI 67
GA+ ++I+ + W + +Y D+ G + ++ D+ +V +V I+ D+
Sbjct: 118 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 176
Query: 68 EKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM-----TDGMTNLLRT 122
L + R IL + I ++ IG KG +I+ TDG +LL+
Sbjct: 177 RSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG--DLLK- 233
Query: 123 LEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATS 182
+ V G + + F RW +E P A + L YDA
Sbjct: 234 ----IQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 289
Query: 183 ALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-V 241
+ A + + + A Q G ++ +AL ++ GL+G+ F
Sbjct: 290 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQ 348
Query: 242 DGQLQSSAFEIINVN-NGARGVGFWS 266
+G+ + I+ + NG R +G+WS
Sbjct: 349 NGKRINYTINIMELKTNGPRKIGYWS 374
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G+ D + TI R +DF+ P+ G+S+++
Sbjct: 71 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 299 KGW-EIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEEL----- 352
+GW +I + KLR V +S F V +P ++ V G S D K +I+E+
Sbjct: 204 EGWVDIRSGNVKLRWRVDWPMRWSHF-GVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEA 262
Query: 353 PYAVAYDFVPYAQPDGTSSGSYNDLI 378
P ++ Y+FV G SGS ++I
Sbjct: 263 PLSLMYEFVGIKGQKGKMSGSKGNVI 288
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G D V TI R +DF+ P+ G+S+++
Sbjct: 87 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 131
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSV--ISPLATDDQI 67
GA+ ++I+ + W + +Y D+ G + ++ D+ +V +V I+ D+
Sbjct: 113 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 171
Query: 68 EKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM-----TDGMTNLLRT 122
L + R IL + I ++ IG KG +I+ TDG +LL+
Sbjct: 172 RSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG--DLLK- 228
Query: 123 LEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATS 182
+ V G + + F RW +E P A + L YDA
Sbjct: 229 ----IQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 284
Query: 183 ALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-V 241
+ A + + + A Q G ++ +AL ++ GL+G+ F
Sbjct: 285 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQ 343
Query: 242 DGQLQSSAFEIINVN-NGARGVGFWS 266
+G+ + I+ + NG R +G+WS
Sbjct: 344 NGKRINYTINIMELKTNGPRKIGYWS 369
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 294 STSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELP 353
S + G E ++ KL V + ++ KV +D K Q +VG I++ KA+ EL
Sbjct: 25 SNNQSAGIEAIKSKGKLVVALNPDFAPFEYQKV-VDGKNQ---IVGSDIELAKAIATEL- 79
Query: 354 YAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESG 413
V + P S+++++ V G+ D + + RS DF+ PY +
Sbjct: 80 -GVELELSPM---------SFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAK 129
Query: 414 VSMIVPIKD 422
+IV D
Sbjct: 130 NKLIVKKSD 138
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G D V TI R +DF+ P+ G+S+++
Sbjct: 68 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G D V TI R +DF+ P+ G+S+++
Sbjct: 68 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSV--ISPLATDDQI 67
GA+ ++I+ + W + +Y D+ G + ++ D+ +V +V I+ D+
Sbjct: 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 68 EKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM-----TDGMTNLLRT 122
L + R IL + I ++ IG KG +I+ TDG +LL+
Sbjct: 169 RSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG--DLLK- 225
Query: 123 LEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATS 182
+ V G + + F RW +E P A + L YDA
Sbjct: 226 ----IQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 281
Query: 183 ALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-V 241
+ A + + + A Q G ++ +AL ++ GL+G+ F
Sbjct: 282 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQ 340
Query: 242 DGQLQSSAFEIINVN-NGARGVGFWS 266
+G+ + I+ + NG R +G+WS
Sbjct: 341 NGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G+ D + TI R +DF+ P+ G+S+++
Sbjct: 71 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSV--ISPLATDDQI 67
GA+ ++I+ + W + +Y D+ G + ++ D+ +V +V I+ D+
Sbjct: 108 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 166
Query: 68 EKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM-----TDGMTNLLRT 122
L + R IL + I ++ IG KG +I+ TDG +LL+
Sbjct: 167 RSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG--DLLK- 223
Query: 123 LEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATS 182
+ V G + + F RW +E P A + L YDA
Sbjct: 224 ----IQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 279
Query: 183 ALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-V 241
+ A + + + A Q G ++ +AL ++ GL+G+ F
Sbjct: 280 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQ 338
Query: 242 DGQLQSSAFEIINVN-NGARGVGFWS 266
+G+ + I+ + NG R +G+WS
Sbjct: 339 NGKRINYTINIMELKTNGPRKIGYWS 364
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G D V TI R +DF+ P+ G+S+++
Sbjct: 68 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
+N ++ ++ G D V TI R +DF+ P+ G+S+++
Sbjct: 68 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|2D7N|A Chain A, Solution Structure Of The 16th Filamin Domain From Human
Filamin C
Length = 93
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 121 RTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLF 166
+T P++TD+ G I VR Y P K L +++ + +P F
Sbjct: 34 KTARPNITDNKDGTITVR-YAPTEKGLHQMGIKYDGNHIPGSPLQF 78
>pdb|1H1N|A Chain A, Atomic Resolution Structure Of The Major Endoglucanase
From Thermoascus Aurantiacus
pdb|1H1N|B Chain B, Atomic Resolution Structure Of The Major Endoglucanase
From Thermoascus Aurantiacus
Length = 305
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 225 ALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGV 262
A+ IR G T YIFV+G + A+ NVN+ + +
Sbjct: 149 AIDGIRSAGATSQYIFVEGNSWTGAWTWTNVNDNMKSL 186
>pdb|1GZJ|A Chain A, Structure Of Thermoascus Aurantiacus Family 5
Endoglucanase
pdb|1GZJ|B Chain B, Structure Of Thermoascus Aurantiacus Family 5
Endoglucanase
Length = 304
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 225 ALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGV 262
A+ IR G T YIFV+G + A+ NVN+ + +
Sbjct: 148 AIDGIRSAGATSQYIFVEGNSWTGAWTWTNVNDNMKSL 185
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 215 ISQNGPKLLQALSSIRFR-GLTGDYIF-VDGQLQSSAFEIINVNNGAR-GVGFWSPEKGX 271
I + GP + L S ++ G+TG F DG + + + I+N+ N VG ++
Sbjct: 294 IWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGIYN----- 348
Query: 272 XXXXXXXXXXXXXXRPIIWPGDSTSDPKGWEI 303
R IIWPG T P+G+++
Sbjct: 349 ------GTHVIPNDRKIIWPGGETEKPRGYQV 374
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 339 GYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTI 395
GY ID+ + + L + V Y D + G +N ++ ++ + D V I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVN-GQWNGMVRELIDHKADLAVAPLAI 92
Query: 396 VFNRSNYVDFTLPYTESGVSMI 417
R +DF+ P+ G+S++
Sbjct: 93 TCVREKVIDFSKPFMTLGISIL 114
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 309 KLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDG 368
+LRVG+ + G+ F + K ++ +V+G+ +D+ + + V VP
Sbjct: 6 ELRVGL--EPGYLPF-----EXKDKKGNVIGFDVDLAREXAK--AXGVKLKLVP------ 50
Query: 369 TSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418
S++ LI + +FD ++ TI R+ V+F PY G S++V
Sbjct: 51 ---TSWDGLIPGLVTEKFDIIISGXTISQERNLRVNFVEPYIVVGQSLLV 97
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 107/269 (39%), Gaps = 24/269 (8%)
Query: 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEK 69
GA+ ++I+ + W + +Y D+ G + ++ D+ +V + I+ ++ +
Sbjct: 110 GALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQV---TAINVGNINNDKKD 165
Query: 70 ELYK-----LFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM-----TDGMTNL 119
E+Y+ L + R IL + I ++ IG KG +I+ TDG +L
Sbjct: 166 EMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG--DL 223
Query: 120 LRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYD 179
L+ + V G + + F RW +E P + L YD
Sbjct: 224 LK-----IQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTTTIKYTSALTYD 278
Query: 180 ATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYI 239
A + A + + + A Q G ++ +AL ++ GL+G+
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQ-GVEIERALKQVQVEGLSGNIK 337
Query: 240 F-VDGQLQSSAFEIINVN-NGARGVGFWS 266
F +G+ + I+ + NG R +G+WS
Sbjct: 338 FDQNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 605 QHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658
Q C T E F+ +GFG SP +VS +IL E M++++ W +
Sbjct: 234 QKCDLVTTGELFFR-SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR 286
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 605 QHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658
Q C T E F+ +GFG SP +VS +IL E M++++ W +
Sbjct: 234 QKCDLVTTGELFFR-SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,016,304
Number of Sequences: 62578
Number of extensions: 997435
Number of successful extensions: 2131
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 176
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)