Query 043276
Match_columns 829
No_of_seqs 479 out of 3247
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 05:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 8.3E-86 2.8E-90 807.0 53.2 665 8-711 108-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 5E-33 1.7E-37 309.0 26.9 259 8-273 117-379 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 2.1E-32 7.1E-37 304.1 26.4 259 8-273 117-377 (389)
4 2e4u_A Metabotropic glutamate 100.0 6E-32 2E-36 314.4 29.0 287 1-314 166-501 (555)
5 3sm9_A Mglur3, metabotropic gl 100.0 3.3E-32 1.1E-36 310.0 25.9 269 1-294 165-478 (479)
6 3hsy_A Glutamate receptor 2; l 100.0 3.5E-32 1.2E-36 300.9 24.1 260 8-273 108-373 (376)
7 3ks9_A Mglur1, metabotropic gl 100.0 7.3E-32 2.5E-36 308.6 26.9 277 1-300 177-496 (496)
8 3saj_A Glutamate receptor 1; r 100.0 7.4E-31 2.5E-35 291.3 24.4 257 8-272 115-375 (384)
9 3qel_B Glutamate [NMDA] recept 100.0 2.5E-31 8.7E-36 291.7 17.4 238 1-292 116-363 (364)
10 3mq4_A Mglur7, metabotropic gl 100.0 1.4E-31 4.7E-36 305.6 14.9 268 1-291 166-480 (481)
11 3om0_A Glutamate receptor, ion 100.0 8.5E-30 2.9E-34 283.7 25.9 260 1-273 119-380 (393)
12 3qek_A NMDA glutamate receptor 100.0 6E-30 2E-34 284.0 22.4 243 1-293 119-384 (384)
13 4f11_A Gamma-aminobutyric acid 100.0 2.1E-29 7.3E-34 284.3 21.8 269 1-300 134-425 (433)
14 1jdp_A NPR-C, atrial natriuret 100.0 9.4E-29 3.2E-33 279.7 25.8 261 1-294 134-413 (441)
15 3h6g_A Glutamate receptor, ion 100.0 3E-28 1E-32 271.4 25.6 256 1-273 118-382 (395)
16 1dp4_A Atrial natriuretic pept 100.0 6.7E-28 2.3E-32 272.1 25.1 264 1-301 126-420 (435)
17 1yae_A Glutamate receptor, ion 99.9 9.2E-27 3.1E-31 250.6 16.6 279 305-678 10-305 (312)
18 2a5s_A N-methyl-D-aspartate re 99.9 6.2E-26 2.1E-30 240.6 8.1 243 304-664 25-283 (284)
19 3g3k_A Glutamate receptor, ion 99.9 1.3E-24 4.5E-29 226.8 17.3 240 306-664 2-258 (259)
20 4h5g_A Amino acid ABC superfam 99.9 1.5E-24 5.1E-29 224.3 15.9 223 307-658 11-237 (243)
21 1pb7_A N-methyl-D-aspartate re 99.9 3.8E-25 1.3E-29 235.4 11.5 236 307-664 40-291 (292)
22 4gvo_A LMO2349 protein; struct 99.9 3.1E-24 1.1E-28 221.9 14.9 224 306-659 7-236 (243)
23 2rc8_A Glutamate [NMDA] recept 99.9 2.8E-24 9.7E-29 229.0 13.3 214 336-664 67-293 (294)
24 2v3u_A Glutamate receptor delt 99.9 3.4E-23 1.2E-27 216.6 18.4 240 307-664 2-264 (265)
25 3k4u_A Binding component of AB 99.9 8.4E-23 2.9E-27 211.1 18.0 230 306-664 3-234 (245)
26 3kzg_A Arginine 3RD transport 99.9 1.1E-22 3.9E-27 209.0 18.0 224 307-663 2-235 (237)
27 1mqi_A Glutamate receptor 2; G 99.9 1.7E-22 5.9E-27 211.2 17.5 238 306-664 2-262 (263)
28 3i6v_A Periplasmic His/Glu/Gln 99.9 1.9E-22 6.5E-27 206.8 16.4 219 307-665 4-224 (232)
29 4f3p_A Glutamine-binding perip 99.9 4.1E-22 1.4E-26 206.6 18.4 223 305-660 21-244 (249)
30 3hv1_A Polar amino acid ABC up 99.9 6E-22 2.1E-26 207.7 18.2 221 307-659 20-249 (268)
31 3kbr_A Cyclohexadienyl dehydra 99.9 3E-22 1E-26 205.9 15.2 221 307-658 14-237 (239)
32 3del_B Arginine binding protei 99.9 8.4E-22 2.9E-26 203.0 17.0 220 306-661 9-235 (242)
33 1ii5_A SLR1257 protein; membra 99.9 2.5E-21 8.4E-26 197.9 18.0 223 306-659 2-227 (233)
34 3tql_A Arginine-binding protei 99.9 2.1E-21 7.4E-26 197.4 17.4 218 308-657 2-227 (227)
35 1wdn_A GLNBP, glutamine bindin 99.9 7.4E-21 2.5E-25 193.2 18.0 221 307-660 2-224 (226)
36 3h7m_A Sensor protein; histidi 99.9 6.9E-21 2.4E-25 194.7 17.3 221 306-659 9-231 (234)
37 4dz1_A DALS D-alanine transpor 99.9 5.2E-21 1.8E-25 199.6 16.4 222 306-659 27-254 (259)
38 2y7i_A STM4351; arginine-bindi 99.8 2.1E-20 7.2E-25 190.5 19.1 217 307-658 5-228 (229)
39 3mpk_A Virulence sensor protei 99.8 6.2E-21 2.1E-25 200.0 14.9 220 307-659 31-253 (267)
40 4eq9_A ABC transporter substra 99.8 1.2E-20 4E-25 194.7 16.4 222 306-659 6-236 (246)
41 1lst_A Lysine, arginine, ornit 99.8 1.9E-20 6.6E-25 192.3 17.0 222 307-659 3-233 (239)
42 2iee_A ORF2, probable ABC tran 99.8 1.4E-20 5E-25 197.7 15.9 222 306-658 19-246 (271)
43 2q88_A EHUB, putative ABC tran 99.8 2.7E-20 9.4E-25 193.6 16.8 223 307-657 12-239 (257)
44 3td9_A Branched chain amino ac 99.8 1.5E-19 5.1E-24 198.7 21.3 228 1-268 128-363 (366)
45 2pyy_A Ionotropic glutamate re 99.8 4.8E-20 1.6E-24 187.5 14.5 221 307-659 2-223 (228)
46 3h5l_A Putative branched-chain 99.8 2.1E-19 7.3E-24 201.4 20.7 215 1-245 136-361 (419)
47 2pvu_A ARTJ; basic amino acid 99.8 2.2E-19 7.6E-24 188.6 19.1 241 285-659 16-263 (272)
48 4i62_A Amino acid ABC transpor 99.8 1.2E-19 4.1E-24 189.8 16.9 224 307-659 38-265 (269)
49 3i45_A Twin-arginine transloca 99.8 3.5E-19 1.2E-23 197.4 21.0 234 1-271 122-363 (387)
50 3qax_A Probable ABC transporte 99.8 3.4E-19 1.2E-23 186.2 17.9 219 306-659 29-254 (268)
51 4evq_A Putative ABC transporte 99.8 1.2E-18 4.1E-23 192.0 22.8 229 1-267 131-363 (375)
52 2vha_A Periplasmic binding tra 99.8 4.1E-19 1.4E-23 188.1 18.1 227 307-663 16-253 (287)
53 1usg_A Leucine-specific bindin 99.8 4.8E-19 1.6E-23 192.9 19.1 223 1-261 117-344 (346)
54 2yln_A Putative ABC transporte 99.8 3.4E-19 1.2E-23 188.5 16.7 219 307-660 56-279 (283)
55 3ipc_A ABC transporter, substr 99.8 4.9E-19 1.7E-23 193.8 18.4 229 1-268 117-352 (356)
56 3i09_A Periplasmic branched-ch 99.8 1.2E-18 4E-23 192.3 21.0 218 1-256 120-339 (375)
57 4eyg_A Twin-arginine transloca 99.8 3.1E-18 1.1E-22 188.2 23.6 232 1-267 119-359 (368)
58 2yjp_A Putative ABC transporte 99.8 4.8E-19 1.6E-23 188.2 16.0 218 307-658 54-276 (291)
59 1xt8_A Putative amino-acid tra 99.8 4.8E-19 1.6E-23 188.2 15.8 218 307-658 43-265 (292)
60 3hut_A Putative branched-chain 99.8 2E-18 6.8E-23 189.0 20.8 229 1-267 119-353 (358)
61 3n0w_A ABC branched chain amin 99.8 6.2E-18 2.1E-22 186.8 20.0 219 1-256 122-343 (379)
62 4f06_A Extracellular ligand-bi 99.8 3.3E-17 1.1E-21 180.3 23.2 226 1-258 119-350 (371)
63 3eaf_A ABC transporter, substr 99.8 2.5E-17 8.6E-22 182.7 21.4 238 1-269 120-373 (391)
64 3lkb_A Probable branched-chain 99.7 1.2E-17 4E-22 185.4 16.5 240 2-272 123-379 (392)
65 1pea_A Amidase operon; gene re 99.7 2.2E-16 7.5E-21 174.7 23.3 233 1-265 120-357 (385)
66 3lop_A Substrate binding perip 99.7 1.2E-16 4.1E-21 175.4 20.0 223 1-258 121-352 (364)
67 3n0x_A Possible substrate bind 99.7 1.9E-16 6.6E-21 174.4 17.0 214 1-256 122-345 (374)
68 3snr_A Extracellular ligand-bi 99.7 3.1E-16 1.1E-20 171.5 18.2 230 1-261 115-360 (362)
69 2v25_A Major cell-binding fact 99.7 7.1E-17 2.4E-21 167.5 9.6 214 307-657 37-258 (259)
70 3sg0_A Extracellular ligand-bi 99.7 4.6E-16 1.6E-20 171.9 15.6 230 1-261 139-384 (386)
71 4gnr_A ABC transporter substra 99.7 2.1E-15 7.2E-20 164.6 19.1 219 1-262 122-348 (353)
72 3ckm_A YRAM (HI1655), LPOA; pe 99.4 2.3E-12 8E-17 138.8 15.0 211 2-263 105-320 (327)
73 2h4a_A YRAM (HI1655); perplasm 99.2 5E-11 1.7E-15 127.5 14.6 203 4-258 105-312 (325)
74 3n5l_A Binding protein compone 98.8 4E-08 1.4E-12 104.5 14.0 215 307-657 3-242 (310)
75 2ozz_A Hypothetical protein YH 98.7 1.7E-08 5.8E-13 100.4 8.3 182 334-657 27-223 (231)
76 3p7i_A PHND, subunit of alkylp 98.7 1E-07 3.4E-12 101.7 13.0 216 306-657 12-251 (321)
77 3ksx_A Nitrate transport prote 97.8 0.00018 6.3E-09 76.5 15.0 92 532-629 123-219 (324)
78 3uif_A Sulfonate ABC transport 97.8 0.00011 3.9E-09 79.0 12.6 105 532-643 111-228 (348)
79 2x26_A Periplasmic aliphatic s 97.7 0.00027 9.1E-09 74.5 14.4 118 532-657 97-231 (308)
80 3un6_A Hypothetical protein sa 97.7 0.00013 4.6E-09 78.3 10.4 121 532-658 145-283 (341)
81 3qsl_A Putative exported prote 97.5 0.0014 4.8E-08 70.0 15.3 136 349-606 59-205 (346)
82 3ix1_A N-formyl-4-amino-5-amin 97.4 0.00053 1.8E-08 72.0 10.5 78 334-421 14-95 (302)
83 2f5x_A BUGD; periplasmic bindi 97.4 0.0031 1.1E-07 66.3 16.0 118 532-656 123-275 (312)
84 2dvz_A BUGE, putative exported 97.1 0.0063 2.2E-07 64.0 15.1 120 532-656 127-279 (314)
85 2qpq_A Protein BUG27; alpha/be 97.1 0.0066 2.3E-07 63.5 15.2 118 532-656 114-266 (301)
86 2k1e_A Water soluble analogue 96.7 0.0031 1.1E-07 54.3 6.6 76 447-526 19-96 (103)
87 2ih3_C Voltage-gated potassium 96.6 0.01 3.5E-07 52.8 9.8 75 448-526 41-117 (122)
88 4ddd_A Immunogenic protein; ss 96.3 0.011 3.7E-07 62.8 9.9 58 532-595 138-202 (327)
89 2a9h_A Voltage-gated potassium 96.2 0.023 7.8E-07 52.7 10.2 76 449-528 65-142 (155)
90 2x7q_A Ca3427, possible thiami 96.2 0.019 6.6E-07 60.6 11.1 105 532-646 112-236 (321)
91 4ab5_A Transcriptional regulat 96.1 0.047 1.6E-06 53.3 12.4 85 306-422 6-90 (222)
92 3eff_K Voltage-gated potassium 95.9 0.023 8E-07 51.8 8.6 72 449-524 21-94 (139)
93 2g29_A Nitrate transport prote 95.8 0.031 1.1E-06 61.4 10.7 103 536-645 151-272 (417)
94 4h33_A LMO2059 protein; bilaye 95.7 0.049 1.7E-06 49.4 9.5 57 471-527 42-100 (137)
95 3ho7_A OXYR; beta-alpha-barrel 95.6 0.039 1.3E-06 54.4 9.7 84 306-421 9-92 (232)
96 3oxn_A Putative transcriptiona 95.5 0.23 8E-06 49.1 15.0 86 305-422 16-101 (241)
97 3ldc_A Calcium-gated potassium 95.0 0.15 5.1E-06 41.5 9.4 52 472-523 28-81 (82)
98 1zbm_A Hypothetical protein AF 95.0 0.077 2.6E-06 54.5 9.7 99 536-646 99-210 (280)
99 2y7p_A LYSR-type regulatory pr 94.6 0.44 1.5E-05 46.4 13.8 70 339-422 21-90 (218)
100 2esn_A Probable transcriptiona 94.4 0.55 1.9E-05 48.5 14.7 83 307-421 100-185 (310)
101 3ouf_A Potassium channel prote 94.3 0.17 5.8E-06 42.7 8.5 58 471-528 31-90 (97)
102 3jv9_A OXYR, transcriptional r 94.3 0.21 7.3E-06 48.2 10.7 68 340-421 18-85 (219)
103 2zzv_A ABC transporter, solute 94.2 0.42 1.4E-05 51.1 13.4 59 530-599 164-222 (361)
104 2q67_A Potassium channel prote 94.1 0.22 7.5E-06 43.4 9.1 55 472-526 49-105 (114)
105 1us5_A Putative GLUR0 ligand b 94.1 0.18 6.2E-06 52.6 10.3 58 532-595 123-187 (314)
106 3fzv_A Probable transcriptiona 94.0 0.5 1.7E-05 48.6 13.5 84 307-422 94-178 (306)
107 2fyi_A HTH-type transcriptiona 93.8 0.69 2.4E-05 45.2 13.4 84 307-421 13-96 (228)
108 1p7b_A Integral membrane chann 93.8 0.21 7.3E-06 52.3 9.8 62 468-529 92-155 (333)
109 1xl4_A Inward rectifier potass 93.7 0.31 1.1E-05 50.4 10.7 60 468-527 78-139 (301)
110 2ql3_A Probable transcriptiona 93.7 0.61 2.1E-05 44.7 12.5 84 306-421 3-86 (209)
111 2hxr_A HTH-type transcriptiona 93.5 0.76 2.6E-05 45.1 13.2 68 340-421 44-111 (238)
112 4esw_A Pyrimidine biosynthesis 93.3 0.4 1.4E-05 50.8 11.2 64 532-601 103-169 (342)
113 2pfy_A Putative exported prote 93.1 1 3.5E-05 46.6 13.9 65 342-411 21-86 (301)
114 2hzl_A Trap-T family sorbitol/ 93.1 0.85 2.9E-05 48.8 13.5 63 343-410 53-117 (365)
115 2i49_A Bicarbonate transporter 93.0 0.5 1.7E-05 51.9 11.7 106 535-645 153-280 (429)
116 2pfz_A Putative exported prote 92.7 1.1 3.7E-05 46.5 13.3 56 530-596 128-183 (301)
117 1orq_C Potassium channel; volt 92.5 0.49 1.7E-05 46.7 9.9 73 449-525 146-220 (223)
118 4gx0_A TRKA domain protein; me 92.5 0.52 1.8E-05 53.8 11.4 121 471-598 50-181 (565)
119 3kos_A HTH-type transcriptiona 92.5 0.78 2.7E-05 44.3 11.3 104 533-643 96-203 (219)
120 1al3_A Cys regulon transcripti 92.1 1.6 5.5E-05 45.4 14.0 206 307-657 92-304 (324)
121 3vou_A ION transport 2 domain 92.0 0.53 1.8E-05 43.1 8.7 53 471-523 51-105 (148)
122 1atg_A MODA, periplasmic molyb 91.8 0.85 2.9E-05 44.4 10.7 69 342-421 15-89 (231)
123 3fxq_A LYSR type regulator of 91.5 2 7E-05 44.0 13.9 70 340-421 106-175 (305)
124 1uth_A LYSR-type regulatory pr 91.3 1.3 4.5E-05 45.9 12.1 68 340-421 119-186 (315)
125 1i6a_A OXYR, hydrogen peroxide 91.0 0.23 7.7E-06 48.4 5.4 83 307-421 4-86 (219)
126 3gzg_A Molybdate-binding perip 90.4 3.6 0.00012 41.2 14.0 70 342-422 38-113 (253)
127 3pjs_K KCSA, voltage-gated pot 90.2 0.013 4.5E-07 55.3 -4.3 71 451-525 50-122 (166)
128 3beh_A MLL3241 protein; transm 90.1 0.58 2E-05 49.9 8.1 74 448-525 141-216 (355)
129 1ixc_A CBNR, LYSR-type regulat 90.1 2.2 7.4E-05 43.4 12.3 83 307-421 90-172 (294)
130 2qks_A KIR3.1-prokaryotic KIR 90.1 1.5 5E-05 45.8 10.8 57 472-528 78-136 (321)
131 3r26_A Molybdate-binding perip 89.4 10 0.00034 37.4 16.2 113 532-656 107-232 (237)
132 3d8u_A PURR transcriptional re 88.6 2.4 8.3E-05 42.6 11.2 108 4-112 103-214 (275)
133 2h9b_A HTH-type transcriptiona 88.6 6.7 0.00023 40.2 14.9 68 340-421 104-171 (312)
134 3brq_A HTH-type transcriptiona 88.3 1.4 4.7E-05 45.1 9.2 107 5-112 123-233 (296)
135 3hhf_B Transcriptional regulat 88.3 0.43 1.5E-05 45.8 5.0 65 340-421 21-85 (213)
136 2h0a_A TTHA0807, transcription 88.1 1.7 6E-05 43.8 9.7 108 4-112 97-213 (276)
137 2h98_A HTH-type transcriptiona 87.9 9.7 0.00033 39.1 15.6 68 340-421 104-171 (313)
138 1lnq_A MTHK channels, potassiu 87.6 0.36 1.2E-05 51.0 4.2 125 472-604 45-172 (336)
139 1dbq_A Purine repressor; trans 87.0 2.1 7.3E-05 43.5 9.6 108 4-112 109-220 (289)
140 3gv0_A Transcriptional regulat 86.8 3.3 0.00011 42.1 11.1 109 4-112 110-221 (288)
141 3gyb_A Transcriptional regulat 85.7 2.1 7.1E-05 43.3 8.7 107 4-112 101-209 (280)
142 3k4h_A Putative transcriptiona 85.6 2.3 7.8E-05 43.3 9.0 109 4-112 114-225 (292)
143 3g85_A Transcriptional regulat 84.7 2.6 9E-05 42.8 8.9 110 4-113 110-222 (289)
144 2fep_A Catabolite control prot 84.5 3.7 0.00012 41.8 10.0 108 4-112 116-228 (289)
145 3onm_A Transcriptional regulat 84.4 11 0.00037 36.6 13.1 83 305-421 24-106 (238)
146 2r9r_B Paddle chimera voltage 84.4 3 0.0001 46.7 9.7 55 471-525 374-430 (514)
147 3clk_A Transcription regulator 83.7 3.4 0.00011 42.1 9.3 108 4-112 108-218 (290)
148 2rgy_A Transcriptional regulat 83.6 2.8 9.4E-05 42.8 8.5 108 4-112 111-222 (290)
149 2xwv_A Sialic acid-binding per 83.1 8.3 0.00028 39.9 12.0 60 530-599 133-192 (312)
150 3dbi_A Sugar-binding transcrip 82.5 3.6 0.00012 43.0 9.2 109 4-112 164-275 (338)
151 3cs3_A Sugar-binding transcrip 82.5 7 0.00024 39.3 11.1 106 5-113 102-211 (277)
152 2hpg_A ABC transporter, peripl 82.2 7.6 0.00026 40.5 11.4 60 530-599 148-207 (327)
153 3bbl_A Regulatory protein of L 82.2 4.2 0.00015 41.2 9.3 107 5-112 109-221 (287)
154 1r9l_A Glycine betaine-binding 82.2 2.4 8.3E-05 44.0 7.4 40 342-391 24-63 (309)
155 2qu7_A Putative transcriptiona 82.1 3.4 0.00012 42.0 8.5 108 4-112 105-220 (288)
156 3ixl_A Amdase, arylmalonate de 81.0 8.3 0.00028 38.2 10.5 76 9-87 105-189 (240)
157 3qk7_A Transcriptional regulat 81.0 5.8 0.0002 40.4 9.8 108 5-112 110-220 (294)
158 1qpz_A PURA, protein (purine n 80.9 5 0.00017 41.9 9.5 106 6-112 162-271 (340)
159 3ukm_A Potassium channel subfa 80.1 2.3 7.9E-05 43.1 6.1 66 471-536 200-274 (280)
160 2hsg_A Glucose-resistance amyl 80.1 3.7 0.00013 42.8 8.1 106 6-112 162-272 (332)
161 3c3k_A Alanine racemase; struc 80.1 5 0.00017 40.6 9.0 104 5-112 108-217 (285)
162 3k9c_A Transcriptional regulat 79.8 8.8 0.0003 38.9 10.7 107 5-112 110-218 (289)
163 1xs5_A 29 kDa protein, membran 79.3 28 0.00097 34.3 13.8 36 345-390 21-56 (241)
164 3hcw_A Maltose operon transcri 79.3 11 0.00038 38.2 11.4 103 6-112 116-225 (295)
165 1sw5_A Osmoprotection protein 79.2 5.2 0.00018 40.6 8.6 104 532-644 125-238 (275)
166 2h3h_A Sugar ABC transporter, 79.2 12 0.00041 38.4 11.6 97 4-103 104-206 (313)
167 3g1w_A Sugar ABC transporter; 78.9 10 0.00036 38.5 11.0 110 4-114 108-221 (305)
168 2o20_A Catabolite control prot 78.6 5.7 0.00019 41.4 8.9 106 6-112 165-272 (332)
169 1nh8_A ATP phosphoribosyltrans 78.2 6.1 0.00021 40.3 8.4 100 532-644 121-224 (304)
170 2iks_A DNA-binding transcripti 78.1 8.4 0.00029 39.0 10.0 106 4-112 121-230 (293)
171 3bfj_A 1,3-propanediol oxidore 78.1 6 0.0002 42.5 9.0 88 11-98 23-114 (387)
172 3ksm_A ABC-type sugar transpor 78.1 7.4 0.00025 38.8 9.4 98 4-103 106-211 (276)
173 3ox4_A Alcohol dehydrogenase 2 77.8 3.6 0.00012 44.1 7.2 90 10-99 20-111 (383)
174 3kke_A LACI family transcripti 77.5 7 0.00024 39.9 9.2 107 5-111 115-229 (303)
175 2vpn_A Periplasmic substrate b 77.2 13 0.00046 38.3 11.3 59 530-598 130-188 (316)
176 3kjx_A Transcriptional regulat 76.6 5.8 0.0002 41.5 8.4 107 5-112 169-280 (344)
177 3ctp_A Periplasmic binding pro 76.5 3.7 0.00013 42.8 6.7 105 6-112 157-264 (330)
178 3egc_A Putative ribose operon 75.9 3.9 0.00013 41.5 6.6 108 4-112 108-219 (291)
179 3h5o_A Transcriptional regulat 75.6 11 0.00037 39.2 10.2 108 4-112 161-272 (339)
180 3e3m_A Transcriptional regulat 75.6 14 0.00048 38.7 11.1 108 5-113 171-284 (355)
181 3mz1_A Putative transcriptiona 74.5 3 0.0001 42.2 5.3 80 307-421 87-166 (300)
182 3o74_A Fructose transport syst 74.1 15 0.0005 36.5 10.4 105 4-112 103-212 (272)
183 3k6v_A Solute-binding protein 73.2 71 0.0024 33.5 15.6 70 343-423 59-134 (354)
184 2rjo_A Twin-arginine transloca 73.2 18 0.00063 37.3 11.2 99 4-104 117-222 (332)
185 3um7_A Potassium channel subfa 73.0 5.7 0.00019 40.9 6.7 54 471-524 114-169 (309)
186 3gbv_A Putative LACI-family tr 72.7 5.7 0.00019 40.4 6.9 107 4-114 116-232 (304)
187 3szp_A Transcriptional regulat 72.4 2.2 7.5E-05 43.1 3.6 79 307-420 90-168 (291)
188 3fd3_A Chromosome replication 72.2 52 0.0018 30.3 13.4 66 339-419 15-80 (208)
189 1twy_A ABC transporter, peripl 72.1 61 0.0021 32.0 14.7 70 341-421 42-112 (290)
190 3rot_A ABC sugar transporter, 72.0 13 0.00045 37.7 9.5 105 4-112 111-222 (297)
191 3brs_A Periplasmic binding pro 71.6 19 0.00065 36.1 10.6 99 4-104 112-215 (289)
192 2czl_A Hypothetical protein TT 71.4 12 0.00042 37.4 9.0 58 535-600 91-150 (272)
193 1vlj_A NADH-dependent butanol 70.5 11 0.00039 40.5 8.9 87 11-97 33-122 (407)
194 2de3_A Dibenzothiophene desulf 69.7 5.5 0.00019 42.3 6.1 120 529-657 108-298 (365)
195 3d02_A Putative LACI-type tran 69.6 21 0.00073 36.0 10.5 100 4-104 108-214 (303)
196 1mkz_A Molybdenum cofactor bio 69.5 16 0.00054 34.0 8.5 65 22-88 11-79 (172)
197 3um7_A Potassium channel subfa 69.3 13 0.00046 38.1 8.5 54 472-525 224-285 (309)
198 1rrm_A Lactaldehyde reductase; 69.3 6.8 0.00023 42.0 6.7 89 11-99 21-111 (386)
199 2fn9_A Ribose ABC transporter, 69.1 21 0.00072 35.8 10.3 95 6-103 108-215 (290)
200 3bil_A Probable LACI-family tr 68.9 16 0.00056 38.1 9.6 103 7-112 170-274 (348)
201 1byk_A Protein (trehalose oper 68.6 31 0.0011 33.7 11.3 95 5-103 99-196 (255)
202 2vk2_A YTFQ, ABC transporter p 68.5 17 0.00059 37.0 9.5 104 6-112 110-224 (306)
203 3h75_A Periplasmic sugar-bindi 68.1 26 0.00091 36.4 11.1 108 4-112 121-238 (350)
204 2xed_A Putative maleate isomer 68.1 27 0.00092 35.2 10.6 77 9-88 134-218 (273)
205 3hs3_A Ribose operon repressor 67.8 13 0.00043 37.4 8.2 101 5-112 107-211 (277)
206 3tmg_A Glycine betaine, L-prol 65.6 23 0.0008 35.8 9.6 41 342-393 32-72 (280)
207 3miz_A Putative transcriptiona 65.6 5.9 0.0002 40.4 5.2 108 4-112 114-230 (301)
208 1o2d_A Alcohol dehydrogenase, 65.4 19 0.00066 38.1 9.3 87 11-98 31-120 (371)
209 1jye_A Lactose operon represso 65.0 33 0.0011 35.6 11.1 102 8-112 166-271 (349)
210 3jvd_A Transcriptional regulat 64.4 30 0.001 35.7 10.6 104 5-112 158-264 (333)
211 3l6g_A Betaine ABC transporter 64.3 13 0.00045 37.1 7.3 43 340-393 16-58 (256)
212 3sya_A G protein-activated inw 64.2 28 0.00094 36.3 9.8 59 471-529 90-152 (340)
213 1h3d_A ATP-phosphoribosyltrans 63.8 38 0.0013 34.4 10.5 100 532-644 116-218 (299)
214 2dgd_A 223AA long hypothetical 62.7 28 0.00097 33.7 9.3 77 9-88 96-181 (223)
215 3hn0_A Nitrate transport prote 62.7 25 0.00085 35.5 9.2 61 541-606 95-161 (283)
216 3huu_A Transcription regulator 62.5 18 0.00062 36.7 8.3 103 5-112 128-235 (305)
217 2ioy_A Periplasmic sugar-bindi 62.2 45 0.0015 33.2 11.2 95 7-103 107-207 (283)
218 3uhj_A Probable glycerol dehyd 61.9 10 0.00035 40.5 6.3 74 12-89 44-117 (387)
219 3jy6_A Transcriptional regulat 61.7 29 0.001 34.5 9.6 104 4-113 106-215 (276)
220 2xxp_A CPS2A; replication, pep 61.4 7.5 0.00026 41.7 5.1 69 528-605 24-99 (398)
221 3l6u_A ABC-type sugar transpor 61.2 32 0.0011 34.4 9.9 98 5-104 112-220 (293)
222 3e61_A Putative transcriptiona 61.2 15 0.00051 36.7 7.2 105 4-113 105-211 (277)
223 2fqx_A Membrane lipoprotein TM 60.9 40 0.0014 34.6 10.6 107 5-113 108-221 (318)
224 2x7x_A Sensor protein; transfe 60.9 26 0.00088 36.0 9.2 96 5-103 110-212 (325)
225 3lft_A Uncharacterized protein 60.6 41 0.0014 33.9 10.6 89 9-103 119-210 (295)
226 3tb6_A Arabinose metabolism tr 60.3 9.1 0.00031 38.7 5.4 109 4-113 120-235 (298)
227 2fvy_A D-galactose-binding per 59.5 53 0.0018 33.0 11.3 97 5-102 112-226 (309)
228 3h5t_A Transcriptional regulat 59.3 21 0.00072 37.4 8.3 107 5-112 173-301 (366)
229 3l49_A ABC sugar (ribose) tran 59.1 24 0.00083 35.3 8.4 100 4-104 106-216 (291)
230 4dik_A Flavoprotein; TM0755, e 59.1 54 0.0018 35.2 11.4 92 22-118 266-365 (410)
231 3ukm_A Potassium channel subfa 58.3 17 0.00056 36.8 6.6 56 470-525 91-148 (280)
232 1tjy_A Sugar transport protein 58.0 56 0.0019 33.3 11.1 97 4-102 108-212 (316)
233 2qh8_A Uncharacterized protein 57.8 27 0.00092 35.5 8.6 87 10-102 127-216 (302)
234 3spc_A Inward-rectifier K+ cha 57.1 57 0.002 33.9 10.7 59 471-529 93-155 (343)
235 2hxw_A Major antigenic peptide 57.1 96 0.0033 29.6 12.3 68 342-421 16-90 (237)
236 4ef1_A Pheromone COB1/lipoprot 56.9 92 0.0031 30.6 11.6 37 344-390 21-57 (246)
237 2rin_A Putative glycine betain 56.8 17 0.00059 37.2 6.8 61 532-598 105-181 (298)
238 1jq5_A Glycerol dehydrogenase; 54.5 21 0.00072 37.8 7.2 95 12-114 23-119 (370)
239 3ce9_A Glycerol dehydrogenase; 54.3 29 0.001 36.4 8.3 98 12-117 25-124 (354)
240 2l82_A Designed protein OR32; 54.0 82 0.0028 26.0 8.8 91 4-103 10-104 (162)
241 1y5e_A Molybdenum cofactor bio 53.5 40 0.0014 31.1 8.1 68 19-88 11-82 (169)
242 1gud_A ALBP, D-allose-binding 53.4 80 0.0028 31.4 11.3 94 8-103 117-217 (288)
243 3hhg_A Transcriptional regulat 53.0 6.2 0.00021 40.1 2.6 79 307-420 92-170 (306)
244 1p99_A Hypothetical protein PG 52.9 54 0.0018 33.4 9.7 36 345-390 56-91 (295)
245 1jx6_A LUXP protein; protein-l 52.7 42 0.0014 34.5 9.2 97 5-103 157-258 (342)
246 4fe7_A Xylose operon regulator 52.3 70 0.0024 34.1 11.1 107 5-112 123-236 (412)
247 2is8_A Molybdopterin biosynthe 52.1 34 0.0012 31.4 7.3 64 23-88 3-72 (164)
248 2ks1_B Epidermal growth factor 51.9 25 0.00087 24.4 4.6 12 698-709 29-40 (44)
249 3rfq_A Pterin-4-alpha-carbinol 50.6 40 0.0014 31.7 7.5 64 23-88 32-99 (185)
250 2pjk_A 178AA long hypothetical 50.4 49 0.0017 30.9 8.2 68 19-88 13-91 (178)
251 4edp_A ABC transporter, substr 49.4 2.2E+02 0.0076 28.7 15.0 81 569-654 215-297 (351)
252 3qi7_A Putative transcriptiona 49.1 1.2E+02 0.0043 31.7 11.8 101 4-105 138-251 (371)
253 2dri_A D-ribose-binding protei 48.5 92 0.0032 30.6 10.7 93 8-103 108-206 (271)
254 3p6l_A Sugar phosphate isomera 48.3 74 0.0025 31.2 9.9 93 10-103 25-129 (262)
255 3cfz_A UPF0100 protein MJ1186; 48.2 2.2E+02 0.0075 28.3 13.7 69 343-422 21-95 (292)
256 3lmz_A Putative sugar isomeras 46.3 57 0.0019 32.1 8.6 93 10-103 33-127 (257)
257 3o1i_D Periplasmic protein TOR 45.0 35 0.0012 34.3 6.9 97 4-104 114-218 (304)
258 2qsx_A Putative transcriptiona 44.3 1.5E+02 0.0052 27.6 11.2 78 307-419 18-95 (218)
259 2vd3_A ATP phosphoribosyltrans 43.9 28 0.00095 35.2 5.6 101 532-644 106-208 (289)
260 3m9w_A D-xylose-binding peripl 42.5 73 0.0025 32.1 9.0 99 4-104 105-213 (313)
261 3m9w_A D-xylose-binding peripl 42.4 64 0.0022 32.6 8.5 79 22-103 3-84 (313)
262 2g2c_A Putative molybdenum cof 42.2 41 0.0014 30.9 6.2 64 23-88 7-79 (167)
263 3iwt_A 178AA long hypothetical 41.7 72 0.0025 29.5 8.0 64 23-88 17-91 (178)
264 3isp_A HTH-type transcriptiona 41.5 1.1E+02 0.0039 30.3 10.2 45 373-421 128-172 (303)
265 2l2t_A Receptor tyrosine-prote 41.4 35 0.0012 23.6 4.0 12 698-709 27-38 (44)
266 2jwa_A Receptor tyrosine-prote 40.7 51 0.0018 22.8 4.7 22 688-709 18-39 (44)
267 3tsm_A IGPS, indole-3-glycerol 40.7 1.8E+02 0.0062 29.0 11.1 87 9-103 81-170 (272)
268 2l69_A Rossmann 2X3 fold prote 38.7 1.2E+02 0.004 24.3 7.2 36 3-38 33-68 (134)
269 3gbv_A Putative LACI-family tr 38.7 78 0.0027 31.6 8.4 82 22-103 9-95 (304)
270 1ta9_A Glycerol dehydrogenase; 38.1 55 0.0019 35.6 7.3 97 11-115 81-179 (450)
271 3lr1_A Tungstate ABC transport 38.1 22 0.00075 35.0 3.7 76 338-424 18-96 (236)
272 3kbq_A Protein TA0487; structu 37.7 66 0.0023 29.8 6.7 62 23-87 5-71 (172)
273 3hl0_A Maleylacetate reductase 37.4 64 0.0022 33.8 7.5 96 11-115 24-121 (353)
274 2klu_A T-cell surface glycopro 36.7 49 0.0017 24.9 4.4 17 686-702 13-29 (70)
275 3jzd_A Iron-containing alcohol 36.2 54 0.0019 34.4 6.7 96 11-115 26-123 (358)
276 3guv_A Site-specific recombina 36.0 1.5E+02 0.0051 26.8 9.1 19 7-25 26-44 (167)
277 3rvy_A ION transport protein; 35.9 61 0.0021 32.6 6.9 57 471-527 179-243 (285)
278 3l49_A ABC sugar (ribose) tran 35.8 85 0.0029 31.1 8.1 79 22-103 6-87 (291)
279 8abp_A L-arabinose-binding pro 34.4 78 0.0027 31.7 7.5 87 23-112 134-229 (306)
280 1jlj_A Gephyrin; globular alph 33.8 1E+02 0.0034 29.0 7.5 69 18-88 11-88 (189)
281 3cfx_A UPF0100 protein MA_0280 33.8 3.6E+02 0.012 26.7 15.7 69 343-422 21-95 (296)
282 3pzy_A MOG; ssgcid, seattle st 33.5 62 0.0021 29.6 5.8 63 23-88 9-76 (164)
283 3jy6_A Transcriptional regulat 33.1 95 0.0033 30.5 7.9 77 22-103 8-86 (276)
284 3muq_A Uncharacterized conserv 32.4 37 0.0013 33.3 4.4 75 338-423 18-95 (237)
285 1oj7_A Hypothetical oxidoreduc 32.2 54 0.0018 35.1 6.0 82 12-97 43-127 (408)
286 3uug_A Multiple sugar-binding 32.1 1.1E+02 0.0037 31.0 8.3 79 22-103 4-85 (330)
287 3r6u_A Choline-binding protein 31.8 3E+02 0.01 27.5 11.3 63 532-599 131-201 (284)
288 3cvg_A Putative metal binding 31.1 58 0.002 32.9 5.8 74 340-423 34-116 (294)
289 3cij_A UPF0100 protein AF_0094 30.9 4E+02 0.014 26.3 17.1 69 343-422 21-95 (295)
290 1uuy_A CNX1, molybdopterin bio 30.6 71 0.0024 29.3 5.8 64 23-88 7-81 (167)
291 3h75_A Periplasmic sugar-bindi 30.4 89 0.0031 32.1 7.3 79 22-103 4-87 (350)
292 3g1w_A Sugar ABC transporter; 29.2 91 0.0031 31.2 7.0 80 22-103 5-87 (305)
293 3tb6_A Arabinose metabolism tr 29.0 1.2E+02 0.0042 29.9 8.0 79 22-103 16-100 (298)
294 2nr1_A NR1 M2, M2; receptor, s 28.9 18 0.00061 21.9 0.8 18 471-488 7-24 (27)
295 3l6u_A ABC-type sugar transpor 27.9 1E+02 0.0035 30.5 7.1 79 22-103 9-90 (293)
296 2k1k_A Ephrin type-A receptor 27.6 48 0.0016 22.2 2.8 14 692-705 23-36 (38)
297 2pbq_A Molybdenum cofactor bio 27.3 1.1E+02 0.0036 28.5 6.4 63 23-88 7-78 (178)
298 3o74_A Fructose transport syst 27.0 66 0.0023 31.5 5.3 79 22-103 3-83 (272)
299 4ecf_A ABC-type phosphate tran 26.9 1.2E+02 0.004 30.1 7.1 72 340-422 17-91 (264)
300 2fn9_A Ribose ABC transporter, 26.9 1.2E+02 0.004 30.0 7.3 78 23-103 4-84 (290)
301 1di6_A MOGA, molybdenum cofact 26.9 1.4E+02 0.0049 28.1 7.2 64 23-88 5-76 (195)
302 3d02_A Putative LACI-type tran 26.4 1.3E+02 0.0045 29.8 7.6 80 22-103 5-87 (303)
303 3dbi_A Sugar-binding transcrip 26.3 1.9E+02 0.0065 29.4 9.0 80 20-102 60-143 (338)
304 1tjy_A Sugar transport protein 26.0 85 0.0029 31.8 6.1 80 22-103 4-86 (316)
305 3k4h_A Putative transcriptiona 25.8 1.1E+02 0.0036 30.4 6.7 78 22-103 9-93 (292)
306 1jx6_A LUXP protein; protein-l 25.4 1.6E+02 0.0056 29.9 8.3 80 23-102 45-128 (342)
307 1i4n_A Indole-3-glycerol phosp 25.2 3E+02 0.01 27.0 9.5 87 8-103 62-151 (251)
308 2qip_A Protein of unknown func 24.2 3.9E+02 0.013 24.0 10.1 97 11-113 37-140 (165)
309 3o66_A Glycine betaine/carniti 24.2 3.7E+02 0.013 26.8 10.3 64 532-600 130-201 (282)
310 3bvp_A INT, TP901-1 integrase; 24.1 1.4E+02 0.0049 26.0 6.4 21 6-26 24-44 (138)
311 3fxb_A Trap dicarboxylate tran 23.9 92 0.0032 32.0 5.8 101 530-642 144-247 (326)
312 4a29_A Engineered retro-aldol 23.9 2.5E+02 0.0084 27.7 8.4 84 11-103 68-154 (258)
313 8abp_A L-arabinose-binding pro 23.9 2E+02 0.0068 28.5 8.5 77 23-103 4-83 (306)
314 2hqb_A Transcriptional activat 23.1 4.7E+02 0.016 25.8 11.1 79 20-102 125-204 (296)
315 3huu_A Transcription regulator 22.9 1.1E+02 0.0036 30.7 6.1 89 11-103 12-107 (305)
316 3qja_A IGPS, indole-3-glycerol 22.6 2.8E+02 0.0095 27.6 8.9 87 9-103 74-163 (272)
317 3brq_A HTH-type transcriptiona 22.5 2.6E+02 0.009 27.3 9.0 79 21-103 19-102 (296)
318 1zud_1 Adenylyltransferase THI 22.5 4.5E+02 0.015 25.5 10.4 86 9-102 40-143 (251)
319 3ksm_A ABC-type sugar transpor 22.1 1.2E+02 0.004 29.6 6.1 80 23-103 2-85 (276)
320 2fep_A Catabolite control prot 22.0 1.8E+02 0.0062 28.7 7.6 78 22-103 17-96 (289)
321 3rf7_A Iron-containing alcohol 21.2 1.4E+02 0.0047 31.5 6.6 75 11-89 40-120 (375)
322 3rot_A ABC sugar transporter, 21.0 1.4E+02 0.0047 29.7 6.4 79 23-103 5-87 (297)
323 4euo_A ABC transporter, substr 20.6 6.2E+02 0.021 25.0 16.6 76 566-646 175-250 (320)
324 2fqx_A Membrane lipoprotein TM 20.6 2.7E+02 0.0091 28.2 8.6 62 22-87 5-71 (318)
325 3fni_A Putative diflavin flavo 20.4 4.2E+02 0.015 23.5 9.0 75 22-103 5-85 (159)
326 1ccw_A Protein (glutamate muta 20.3 4.2E+02 0.014 22.9 8.7 86 23-115 5-94 (137)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=8.3e-86 Score=807.05 Aligned_cols=665 Identities=20% Similarity=0.308 Sum_probs=544.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCC--ChhHHHHHHHHhhcCCCeEEEEE
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLA--TDDQIEKELYKLFTMQTRVFILH 85 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~--~~~~~~~~l~~lk~~~arViIv~ 85 (829)
|+.|+++++++|||+||++|| |++||.+.++.|.+++++.|+||++.+.++.+. ++.++..++.+|++++++|||++
T Consensus 108 ~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (823)
T 3kg2_A 108 LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (823)
T ss_dssp CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEE
Confidence 899999999999999999999 889999999999999999999999998877652 25578899999999999999999
Q ss_pred cChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCC
Q 043276 86 MLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSL 165 (829)
Q Consensus 86 ~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~ 165 (829)
++.+.+..++++|+++||+..+|+||+++.+....+. ....+...|++++.++.++++.+++|.++|++.+++.++..
T Consensus 187 ~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 264 (823)
T 3kg2_A 187 CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGA 264 (823)
T ss_dssp CCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTC
T ss_pred CCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCC
Confidence 9999999999999999999899999999854433222 12344566799999999999999999999999998877655
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccc--cCCCChHHHHHHHhccceecccccEEEe-c
Q 043276 166 FDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAF--GISQNGPKLLQALSSIRFRGLTGDYIFV-D 242 (829)
Q Consensus 166 ~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~ 242 (829)
....++.+++++||||+++|+|+++++.+........ ...+|... ..+.+|.+|+++|++++|+|++|.+.|+ +
T Consensus 265 ~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~ 341 (823)
T 3kg2_A 265 HTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG---NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN 341 (823)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS---CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSS
T ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhhccccccCC---CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCC
Confidence 5556788999999999999999999976543221111 11234332 3456789999999999999999999997 9
Q ss_pred CccccceEEEEEcc-CCcEEEEEecCCCCcccccCCCccccCCccceecCCCCCCCCCCcccCCCCceEEEecccccCcc
Q 043276 243 GQLQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFS 321 (829)
Q Consensus 243 G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~~~~P~~~~~p~~~~~lrv~v~~~~~~~ 321 (829)
|++....|+|+|++ +|+++||+|++..++..... . .....+++|+|++...+|
T Consensus 342 G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~----------------------~--~~~~~~~~l~v~~~~~~P-- 395 (823)
T 3kg2_A 342 GKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED----------------------D--TSGLEQKTVVVTTILESP-- 395 (823)
T ss_dssp SCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC----------------------C--CSSCCCCCEEEEECCCTT--
T ss_pred CcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC----------------------c--ccccCCCEEEEEEecCCC--
Confidence 99988899999999 88999999998877653221 0 012347889999875554
Q ss_pred ceEEEee--cCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCC---CCCCChhHHHHhHhcCcccEEEeccccc
Q 043276 322 DFVKVTI--DPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDG---TSSGSYNDLIYQVFLGEFDAVVGDTTIV 396 (829)
Q Consensus 322 p~~~~~~--~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g---~~ng~~~~li~~l~~g~~Di~~~~~~it 396 (829)
|++.+. ++.++++++.|||+||++++++++||++++..++.+ ..| ..||+|++++++|.+|++|++++++++|
T Consensus 396 -~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t 473 (823)
T 3kg2_A 396 -YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTIT 473 (823)
T ss_dssp -TSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCC
T ss_pred -cEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecc
Confidence 555432 233567899999999999999999997766655432 223 2578999999999999999999999999
Q ss_pred cccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc-------
Q 043276 397 FNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPA------- 469 (829)
Q Consensus 397 ~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~------- 469 (829)
++|.+.+|||.||+.+++++++|++....++++.|++||++.+|++++++++++++++|+++|..+.+|+.+.
T Consensus 474 ~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~ 553 (823)
T 3kg2_A 474 LVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRET 553 (823)
T ss_dssp HHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC------------------
T ss_pred hhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCccccccccc
Confidence 9999999999999999999999998777778999999999999999999999999999999998765544221
Q ss_pred -------cCccchhHHHHHHHhhhcCcc-ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhC
Q 043276 470 -------RHQVGTSFWFSFSTMVFSQRE-RVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKR 541 (829)
Q Consensus 470 -------~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~ 541 (829)
..++.+++|+++++++.++.. .|++.++|+++++|||++|||+++|||+|+|+||++++.++|+|++||.++
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~ 633 (823)
T 3kg2_A 554 QSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQ 633 (823)
T ss_dssp -----CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhC
Confidence 124678999999999888754 689999999999999999999999999999999999999999999999986
Q ss_pred CC-cEEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHHh-cCCcCCceeEEEcchhHHHHHHhcC-C
Q 043276 542 GD-NVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSHEECDELFQ-KGSANGGIAAAFDEIPYAKLLIGQH-C 607 (829)
Q Consensus 542 ~~-~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~-~g~~~~g~~a~~~~~~~~~~~~~~~-c 607 (829)
+. ++|+..++....++++...+. .....+++.+++++++. .+. .+|++.+.+.+.|+..+. |
T Consensus 634 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c 709 (823)
T 3kg2_A 634 TEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPC 709 (823)
T ss_dssp CSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTC
T ss_pred CCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCC
Confidence 54 678887877788887643221 01123468889999996 333 689999999999988776 9
Q ss_pred CceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCCCCCC--ccccccccccchhHHHH
Q 043276 608 SKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGT--VVSARSLGLNSFWGLFL 685 (829)
Q Consensus 608 ~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~--~~~~~~L~l~~~~g~f~ 685 (829)
+ ++++++.+...++++++||||||++.||++|+++.|+|++++|.++|+.+...|..... .....+|+++++.|+|+
T Consensus 710 ~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~ 788 (823)
T 3kg2_A 710 D-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFY 788 (823)
T ss_dssp C-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHH
T ss_pred c-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHH
Confidence 6 88999999999999999999999999999999999999999999999988889987652 24667999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 043276 686 IAGIAAILALIIFLAVFVHEHWNVLK 711 (829)
Q Consensus 686 il~vg~~lallvf~~E~~~~~~~~~~ 711 (829)
++++|+++|+++|++|++|++|++++
T Consensus 789 il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 789 ILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 99999999999999999998887754
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=5e-33 Score=308.98 Aligned_cols=259 Identities=18% Similarity=0.267 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
|+.++++++++|||+||++|| |++||...++.|.+++++.|+||++.+.++.. ...++..+|.+|+++++++||++++
T Consensus 117 ~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~ik~~~~~vii~~~~ 194 (389)
T 3o21_A 117 LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIK-DVQEFRRIIEEMDRRQEKRYLIDCE 194 (389)
T ss_dssp SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCC-CTHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCC-CcHHHHHHHHHHHhCCCeEEEEECC
Confidence 899999999999999999999 89999999999999999999999998877542 2458999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCCCc
Q 043276 88 PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFD 167 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~~~ 167 (829)
.+.+..++++|+++||+..+|+||+++.|....+.. .......|++++.++.+++|.+++|.++|++++++.++..+.
T Consensus 195 ~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~ 272 (389)
T 3o21_A 195 VERINTILEQVVILGKHSRGYHYMLANLGFTDILLE--RVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKN 272 (389)
T ss_dssp HHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCCH--HHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSS
T ss_pred HHHHHHHHHHHHHcCcccCCeEEEEccCCcccccHH--HHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCC
Confidence 999999999999999998899999998765543321 233456789999998999999999999999998886654333
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCC--ccccCCCChHHHHHHHhccceecccccEEEe-cCc
Q 043276 168 AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDL--EAFGISQNGPKLLQALSSIRFRGLTGDYIFV-DGQ 244 (829)
Q Consensus 168 ~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~G~ 244 (829)
..++.|++++||||+++|+|+++++.+........ ...+| .....|..|.+|+++|++++|+|++|++.|+ +|+
T Consensus 273 ~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~ 349 (389)
T 3o21_A 273 APLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRG---SAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGR 349 (389)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC--------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSB
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhCcccccCC---CCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCC
Confidence 35678999999999999999999975432211000 11234 2234577899999999999999999999997 999
Q ss_pred cccceEEEEEcc-CCcEEEEEecCCCCccc
Q 043276 245 LQSSAFEIINVN-NGARGVGFWSPEKGLTQ 273 (829)
Q Consensus 245 ~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~ 273 (829)
+....|+|+|+. +|+++||+|++..|+..
T Consensus 350 ~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 350 RTNYTIDVYEMKVSGSRKAGYWNEYERFVP 379 (389)
T ss_dssp BCSCCEEEEEEETTEEEEEEEEETTTEEEC
T ss_pred cccceEEEEEEcCCCceeeeEEcCCCCccc
Confidence 987899999999 88999999999988764
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-32 Score=304.10 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
+.+|+++++++|||+||++||++++++ ..++.+.+++.+.|+||+....++.. +.++...|.+++++++++||++++
T Consensus 117 ~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~~~~~~vIv~~~~ 193 (389)
T 4gpa_A 117 LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIMEKAGQNGWHVSAICVENFN--DVSYRQLLEELDRRQEKKFVIDCE 193 (389)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHHHHHHTTTCEEEEEECTTCC--HHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHHHHHHhcCceEEEEeecCCc--chhHHHHHHHhhccCCcEEEEEec
Confidence 567999999999999999999776665 45778889999999999988766543 678999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCCCc
Q 043276 88 PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFD 167 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~~~ 167 (829)
.+.+..++++|+++||+..+|+||+++++...... ........|+++++...+..+.+++|.++|++.+.+..+...
T Consensus 194 ~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~- 270 (389)
T 4gpa_A 194 IERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL--ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSE- 270 (389)
T ss_dssp HHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC--HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTT-
T ss_pred hhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh--hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCC-
Confidence 99999999999999999999999999987754332 234456778899999999999999999999998877654322
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccEEEe-cCccc
Q 043276 168 AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFV-DGQLQ 246 (829)
Q Consensus 168 ~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~G~~~ 246 (829)
..++.+++++|||||++|+||+++..+........ ...++.|.....|..|.+|+++|++++|+|+||++.|+ +|++.
T Consensus 271 ~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~ 349 (389)
T 4gpa_A 271 TPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRG-NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRV 349 (389)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTT-CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC-CccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCC
Confidence 35678999999999999999999987654332211 12224455666788999999999999999999999997 99998
Q ss_pred cceEEEEEcc-CCcEEEEEecCCCCccc
Q 043276 247 SSAFEIINVN-NGARGVGFWSPEKGLTQ 273 (829)
Q Consensus 247 ~~~y~I~n~~-~g~~~VG~w~~~~g~~~ 273 (829)
...|+|+|++ +|+++||+|++..|+..
T Consensus 350 ~~~~~I~~l~~~~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 350 NYTMDVFELKSTGPRKVGYWNDMDKLVL 377 (389)
T ss_dssp SCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCEEEEEEEECCEEEEEEEEECCCCeEE
Confidence 7899999999 88999999999888764
No 4
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=6e-32 Score=314.42 Aligned_cols=287 Identities=19% Similarity=0.275 Sum_probs=230.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhh-cCCC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQT 79 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk-~~~a 79 (829)
|+|+|..|+.||++++++|||+||++|++|++||+..++.|++++++.|+||++.+.++......++...+.+|+ ++++
T Consensus 166 ~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a 245 (555)
T 2e4u_A 166 TVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNA 245 (555)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTC
T ss_pred eCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCC
Confidence 689999999999999999999999999999999999999999999999999999999986445678999999996 4799
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHH--------
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFR-------- 151 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~-------- 151 (829)
+|||+++..+.+..+++++.++|+ +++||++++|........ ...+.++|++++.++..+.++|++|+
T Consensus 246 ~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~ 321 (555)
T 2e4u_A 246 RVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPVRQFDRYFQSLNPYNN 321 (555)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred CEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhhcceEEEEEeccCCCCcHHHHHhhCCcccC
Confidence 999999999999999999999996 799999999976433222 22456899999999888888887764
Q ss_pred -------HHHHHhhcccCCCC----------Cc-----cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCC
Q 043276 152 -------VRWKRKFLQENPSL----------FD-----AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATD 209 (829)
Q Consensus 152 -------~~w~~~~~~~~~~~----------~~-----~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~ 209 (829)
+.|+..|+|..+.. +. ..+..+++.+|||||++|+|||++..+..... . ..
T Consensus 322 p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~----~---~~ 394 (555)
T 2e4u_A 322 HRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT----T---KL 394 (555)
T ss_dssp TTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC----S---SC
T ss_pred CCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC----C---cc
Confidence 35888899864310 11 01346788999999999999999975321100 0 11
Q ss_pred CccccCCCChHHHHH-HHhcccee------ccccc-EEEe-cCccccceEEEEEcc--CC---cEEEEEecCCCCccccc
Q 043276 210 LEAFGISQNGPKLLQ-ALSSIRFR------GLTGD-YIFV-DGQLQSSAFEIINVN--NG---ARGVGFWSPEKGLTQKL 275 (829)
Q Consensus 210 ~~~~~~~~~g~~l~~-~L~~~~f~------G~tG~-~~F~-~G~~~~~~y~I~n~~--~g---~~~VG~w~~~~g~~~~l 275 (829)
|... ....+++|++ +|++++|. |.+|. +.|+ +|++. ..|+|+|++ +| +++||.|++ .|
T Consensus 395 ~~~~-~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~------~l 466 (555)
T 2e4u_A 395 CDAM-KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE------TL 466 (555)
T ss_dssp CGGG-TSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS------SE
T ss_pred cccc-CCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc------eE
Confidence 2221 1235889999 99999999 99998 8897 99985 899999996 33 899999984 23
Q ss_pred CCCccccCCccceecCCCCCCCCCCcc----cCCCCceEEEec
Q 043276 276 SSNSTTKSKLRPIIWPGDSTSDPKGWE----IPTNEKKLRVGV 314 (829)
Q Consensus 276 ~~~~~~~~~~~~i~Wpg~~~~~P~~~~----~p~~~~~lrv~v 314 (829)
. ++.+.|.|++ .++|++.| .||.+|..+-|.
T Consensus 467 ~------i~~~~I~W~~--~~~P~S~CS~~C~pG~rk~~~~g~ 501 (555)
T 2e4u_A 467 S------LDVDSIHWSR--NSVPTSQCSDPCAPNEMKNMQPGD 501 (555)
T ss_dssp E------CCGGGCCCTT--SSCCCCCSSCCCCTTTEEEECCSS
T ss_pred E------EeccccccCC--CCCcceeeCCCCCCCeeeeecCCC
Confidence 2 4667899987 68999997 688888776554
No 5
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=310.00 Aligned_cols=269 Identities=19% Similarity=0.260 Sum_probs=212.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHH-HHhhcCCC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKEL-YKLFTMQT 79 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l-~~lk~~~a 79 (829)
|+|+|..|+.||++++++|||+||++|++||+||+..++.|++++++.|+||++.+.++......++..++ +.++++++
T Consensus 165 ~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a 244 (479)
T 3sm9_A 165 TVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNA 244 (479)
T ss_dssp SSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTC
T ss_pred eCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999999999999999999999999999998765567888888 66888999
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHH-------
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRV------- 152 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~------- 152 (829)
+|||++++.+.+..++++++++|+. ++||++++|........ .....++|++++.++..+.|+|++|+.
T Consensus 245 ~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 245 RVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred eEEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 9999999999999999999999974 89999999976422222 123568999999999999999999864
Q ss_pred --------HHHHhhcccCCCCC----------cc-----ccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCC
Q 043276 153 --------RWKRKFLQENPSLF----------DA-----ELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATD 209 (829)
Q Consensus 153 --------~w~~~~~~~~~~~~----------~~-----~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~ 209 (829)
.|+..|+|..+... +. ......+.+|||||++|+|||++..+.+... ...
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~-------~~~ 393 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT-------TKL 393 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-------SSC
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC-------CcC
Confidence 69999999754311 00 1113356899999999999999976332111 012
Q ss_pred CccccCCCChHHHH-HHHhccceecc------ccc-EEEe-cCccccceEEEEEcc--CC---cEEEEEecCCCCccccc
Q 043276 210 LEAFGISQNGPKLL-QALSSIRFRGL------TGD-YIFV-DGQLQSSAFEIINVN--NG---ARGVGFWSPEKGLTQKL 275 (829)
Q Consensus 210 ~~~~~~~~~g~~l~-~~L~~~~f~G~------tG~-~~F~-~G~~~~~~y~I~n~~--~g---~~~VG~w~~~~g~~~~l 275 (829)
|.... ...+++|+ ++|++++|++. +|. +.|+ +|++. +.|+|+||+ +| +++||.|+ +.|
T Consensus 394 c~~~~-~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~------~~l 465 (479)
T 3sm9_A 394 CDAMK-ILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA------ETL 465 (479)
T ss_dssp CHHHH-SCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES------SSE
T ss_pred CCCCC-CcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe------ceE
Confidence 32211 23589999 99999999998 565 5687 99985 899999998 44 78999998 233
Q ss_pred CCCccccCCccceecCCCC
Q 043276 276 SSNSTTKSKLRPIIWPGDS 294 (829)
Q Consensus 276 ~~~~~~~~~~~~i~Wpg~~ 294 (829)
. ++.+.|.|||+.
T Consensus 466 ~------i~~~~I~W~~~~ 478 (479)
T 3sm9_A 466 S------LDVNSIHWSRNS 478 (479)
T ss_dssp E------ECGGGCCCC---
T ss_pred E------EecceeEeCCCC
Confidence 3 567889999763
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=3.5e-32 Score=300.95 Aligned_cols=260 Identities=20% Similarity=0.269 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCC--CChhHHHHHHHHhhcCCCeEEEEE
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFILH 85 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~--~~~~~~~~~l~~lk~~~arViIv~ 85 (829)
|+.++++++++|||+||++|| |++||.+.++.|.+++++.|+||++...++.. ..+.++..+|.+|+++++++||++
T Consensus 108 ~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (376)
T 3hsy_A 108 LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (376)
T ss_dssp CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEE
Confidence 899999999999999999999 99999999999999999999999988776533 235689999999999999999999
Q ss_pred cChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCC
Q 043276 86 MLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSL 165 (829)
Q Consensus 86 ~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~ 165 (829)
++.+.+..++++|+++||+..+|+||++++.....+. ........+++++.+..+++|.+++|.++|+++|++.+++.
T Consensus 187 ~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~ 264 (376)
T 3hsy_A 187 CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGA 264 (376)
T ss_dssp SCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG--GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTC
T ss_pred CCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch--HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCC
Confidence 9999999999999999998889999999742222211 11222334588898888889999999999999998876644
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCC--ccccCCCChHHHHHHHhccceecccccEEEe-c
Q 043276 166 FDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDL--EAFGISQNGPKLLQALSSIRFRGLTGDYIFV-D 242 (829)
Q Consensus 166 ~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~ 242 (829)
+...++.|++++||||+++|+|+++++.+.....+. ....+| .....|..|.+|+++|++++|+|++|.+.|+ +
T Consensus 265 ~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~ 341 (376)
T 3hsy_A 265 HTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR---GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN 341 (376)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC---CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTT
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccC---CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCC
Confidence 333578899999999999999999987643221111 111234 3334566789999999999999999999997 9
Q ss_pred CccccceEEEEEcc-CCcEEEEEecCCCCccc
Q 043276 243 GQLQSSAFEIINVN-NGARGVGFWSPEKGLTQ 273 (829)
Q Consensus 243 G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~ 273 (829)
|++....|+|+++. +|+++||+|++..|+..
T Consensus 342 G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 342 GKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp SBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 99888899999999 88999999999888763
No 7
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=7.3e-32 Score=308.56 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=211.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQ 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~ 78 (829)
|+|+|..|+.||++++++|||+||++|++||+||+..++.|++++++.|+||++.+.++......++...+.+|++ ++
T Consensus 177 t~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~ 256 (496)
T 3ks9_A 177 VVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPK 256 (496)
T ss_dssp SSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTT
T ss_pred ecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCc
Confidence 6899999999999999999999999999999999999999999999999999999998866667789999999997 48
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHH------
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRV------ 152 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~------ 152 (829)
++|||+++....+..++++++++|+. ..++||++++|........ .....++|++++.++.++.+++++|+.
T Consensus 257 a~vii~~~~~~~~~~l~~~~~~~g~~-~k~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 334 (496)
T 3ks9_A 257 ARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEVRSFDDYFLKLRLDT 334 (496)
T ss_dssp TCEEEEECCHHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred eEEEEEecChHHHHHHHHHHHHhCCC-CcEEEEEechhcccccccc-ccccccCceEEEeccCCcCcchHhHhccCCcCC
Confidence 99999999999999999999999974 2368999999975433222 234568999999999999999999964
Q ss_pred ---------HHHHhhcccCCCC--------------Cccc----cchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCC
Q 043276 153 ---------RWKRKFLQENPSL--------------FDAE----LNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSS 205 (829)
Q Consensus 153 ---------~w~~~~~~~~~~~--------------~~~~----~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~ 205 (829)
.|+..|+|.++.. ++.. .......+|+|||++|||||++..+.+... .
T Consensus 335 ~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~----~- 409 (496)
T 3ks9_A 335 NTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH----V- 409 (496)
T ss_dssp CCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC----S-
T ss_pred CCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC----C-
Confidence 6999999975431 0000 011234699999999999999975433211 1
Q ss_pred CCCCCccccCCCChHHHHHHHhccceecccccE-EEe-cCccccceEEEEEcc---CC---cEEEEEecCCCCcccccCC
Q 043276 206 NATDLEAFGISQNGPKLLQALSSIRFRGLTGDY-IFV-DGQLQSSAFEIINVN---NG---ARGVGFWSPEKGLTQKLSS 277 (829)
Q Consensus 206 ~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~-~F~-~G~~~~~~y~I~n~~---~g---~~~VG~w~~~~g~~~~l~~ 277 (829)
..|..... ..+++|+++|++++|++.+|+. .|+ +|+.. +.|+|+||+ +| +++||.|+. +.|.
T Consensus 410 --~~c~~~~~-~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~-----~~l~- 479 (496)
T 3ks9_A 410 --GLCDAMKP-IDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE-----GVLN- 479 (496)
T ss_dssp --SCCGGGSS-CCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEET-----TEEE-
T ss_pred --CCCcCCCC-CCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeC-----CeEE-
Confidence 12333222 2589999999999999999974 677 99985 899999998 34 789999973 2333
Q ss_pred CccccCCccceecCCCCCCCCCC
Q 043276 278 NSTTKSKLRPIIWPGDSTSDPKG 300 (829)
Q Consensus 278 ~~~~~~~~~~i~Wpg~~~~~P~~ 300 (829)
++.+.| |.++..++|+|
T Consensus 480 -----i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 480 -----IDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp -----ECTTTC------------
T ss_pred -----Eehhhc-ccCCCCCCCCC
Confidence 455667 88888888875
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.97 E-value=7.4e-31 Score=291.26 Aligned_cols=257 Identities=18% Similarity=0.274 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
|+.++++++++|||+||++|| |++||.+.++.|.+++++.|+||++.+..+. ++.++..+|.+|+++++++||++++
T Consensus 115 ~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~ik~~~~~vii~~~~ 191 (384)
T 3saj_A 115 LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTT--TEEGYRMLFQDLEKKKERLVVVDCE 191 (384)
T ss_dssp CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGGC--CHHHHHHTTTTCCSCSEEEEEEECC
T ss_pred HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcCceEEEEEeccC--CchhHHHHHHHHhccCCcEEEEEcC
Confidence 899999999999999999999 7899999999999999999999999875443 3668999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCCCc
Q 043276 88 PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFD 167 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~~~ 167 (829)
.+.+..++++|+++||+..+|+||+++.+....+. ........|++++.++.+.++.+++|.++|++++++.+|....
T Consensus 192 ~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~ 269 (384)
T 3saj_A 192 SERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL--NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDW 269 (384)
T ss_dssp GGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH--HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH--HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCC
Confidence 99999999999999998889999999854433221 1233445679999999999999999999999999887654333
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccc--cCCCChHHHHHHHhccceecccccEEEe-cCc
Q 043276 168 AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAF--GISQNGPKLLQALSSIRFRGLTGDYIFV-DGQ 244 (829)
Q Consensus 168 ~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~G~ 244 (829)
..++.+++++||||+++|+|+++++.......... ...+|... ..|.+|..|+++|++++|+|++|++.|+ +|+
T Consensus 270 ~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~ 346 (384)
T 3saj_A 270 KRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRG---NAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGR 346 (384)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC---SCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSB
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhccceecCC---CCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCC
Confidence 34577899999999999999999976432211111 11345432 3457899999999999999999999997 999
Q ss_pred cccceEEEEEcc-CCcEEEEEecCCCCcc
Q 043276 245 LQSSAFEIINVN-NGARGVGFWSPEKGLT 272 (829)
Q Consensus 245 ~~~~~y~I~n~~-~g~~~VG~w~~~~g~~ 272 (829)
+....|+|++++ +|+++||+|++..|+.
T Consensus 347 ~~~~~~~i~~~~~~g~~~VG~W~~~~gl~ 375 (384)
T 3saj_A 347 RTNYTLHVIEMKHDGIRKIGYWNEDDKFV 375 (384)
T ss_dssp BCSCCEEEEEEETTEEEEEEEEETTTEEE
T ss_pred cccceEEEEEeccCCcceeEEEcCCCCcc
Confidence 988899999999 8899999999887765
No 9
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.97 E-value=2.5e-31 Score=291.70 Aligned_cols=238 Identities=18% Similarity=0.230 Sum_probs=188.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhC--C--ceeeeEEecCCCCChhHHHHHH-HHhh
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAI--D--TRVPYRSVISPLATDDQIEKEL-YKLF 75 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~--g--i~I~~~~~i~~~~~~~~~~~~l-~~lk 75 (829)
|+|+|..|+.||++|++||||+||++||+|+ .+++.|.+++++. | +||++...++...+..++...+ ++|+
T Consensus 116 t~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~ 191 (364)
T 3qel_B 116 FGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLK 191 (364)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHH
Confidence 6899999999999999999999999999873 3456666666665 5 5999988776554444677788 6899
Q ss_pred cCCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHH
Q 043276 76 TMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWK 155 (829)
Q Consensus 76 ~~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~ 155 (829)
++++||||++|+.+.+..++++|.++||+..+|+||+++.+....+... .+..+|+++++++. |+
T Consensus 192 ~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~------------W~ 256 (364)
T 3qel_B 192 KLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVP---SEFPTGLISVSYDE------------WD 256 (364)
T ss_dssp TCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCCC---TTSCTTCEECCBCT------------TT
T ss_pred ccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCccccc---ccCCCceEEEeecc------------ch
Confidence 9999999999999999999999999999999999999998765444322 24578999988754 42
Q ss_pred HhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCcccc--CCCChHHHHHHHhccceec
Q 043276 156 RKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFG--ISQNGPKLLQALSSIRFRG 233 (829)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~~~L~~~~f~G 233 (829)
+ .+.+++||||+++|+|++++..+.... .....+|...+ .|..|..|+++|++++|+|
T Consensus 257 ~---------------~~~~~~yDaV~~~A~A~~~~~~~~~~i-----~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~G 316 (364)
T 3qel_B 257 Y---------------GLPARVRDGIAIITTAASDMLSEHSFI-----PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEG 316 (364)
T ss_dssp S---------------CHHHHHHHHHHHHHHHHHHHHTTTSCC-----CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETT
T ss_pred h---------------hHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCCCCCCCCCCccCCHHHHHHHHhhceEeC
Confidence 1 145789999999999999986542111 11224455443 5678999999999999999
Q ss_pred ccccEEEe-cCccccceEEEEEcc--CCcEEEEEecCCCCcccccCCCccccCCccceecCC
Q 043276 234 LTGDYIFV-DGQLQSSAFEIINVN--NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPG 292 (829)
Q Consensus 234 ~tG~~~F~-~G~~~~~~y~I~n~~--~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg 292 (829)
+ ++.|+ +|++.++.|+|+|++ +|+++||+|+. .++ +.+.++||+
T Consensus 317 l--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~-~~L------------~~~~~~Wp~ 363 (364)
T 3qel_B 317 R--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD-KSL------------QMKYYVWPR 363 (364)
T ss_dssp E--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS-SCE------------EESCSSCCC
T ss_pred c--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC-CeE------------EeCcCCCCC
Confidence 8 77896 999988999999998 57999999983 222 446899985
No 10
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.97 E-value=1.4e-31 Score=305.64 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=180.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHh-CCceeeeEEecCCCCChh--HHHHHHHHhh-c
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQA-IDTRVPYRSVISPLATDD--QIEKELYKLF-T 76 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~-~gi~I~~~~~i~~~~~~~--~~~~~l~~lk-~ 76 (829)
|+|+|..|+.+|++++++|||+||++|++|++||+..++.|.+++++ .|+||++.+.++...... ++...+.+++ +
T Consensus 166 ~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~ 245 (481)
T 3mq4_A 166 VVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDT 245 (481)
T ss_dssp SSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC
T ss_pred ecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999885 899999998887654333 6778899998 5
Q ss_pred CCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHH----
Q 043276 77 MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRV---- 152 (829)
Q Consensus 77 ~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~---- 152 (829)
++++|||+++..+.+..++++++++|+.. +++||++++|........ .....++|++++.++..+.|++++|+.
T Consensus 246 s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p 323 (481)
T 3mq4_A 246 PNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATVEGFDAYFTSRTL 323 (481)
T ss_dssp ----CEEECCCSSHHHHHC-----------CCCEEEC------------------CCCEEEEECCCCCHHHHHHHHTCCT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccccc-ccchhhccEEEEecCcCccccHHHHhhcCCc
Confidence 89999999999999999999999999743 489999999986433222 234678999999999999999999864
Q ss_pred -----------HHHHhhcccCCCC--------------Ccc------ccchhHHHHHHHHHHHHHHHHHhcccCccccCC
Q 043276 153 -----------RWKRKFLQENPSL--------------FDA------ELNIFGLLAYDATSALAVAVEKAGITGFGFDKT 201 (829)
Q Consensus 153 -----------~w~~~~~~~~~~~--------------~~~------~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~ 201 (829)
.|+..|+|..+.. +.. ......+.+|||||++|||||++..+.+...
T Consensus 324 ~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~-- 401 (481)
T 3mq4_A 324 ENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY-- 401 (481)
T ss_dssp TTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC--
Confidence 5999999975421 110 1113456799999999999999975432211
Q ss_pred CCCCCCCCCccccCCCChHHHHHHHhccceecccc-cEEEe-cCccccceEEEEEcc---CC---cEEEEEecCCCCccc
Q 043276 202 NVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTG-DYIFV-DGQLQSSAFEIINVN---NG---ARGVGFWSPEKGLTQ 273 (829)
Q Consensus 202 ~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG-~~~F~-~G~~~~~~y~I~n~~---~g---~~~VG~w~~~~g~~~ 273 (829)
...|..... ..|++|+++|++++|++.+| .+.|+ +|++. +.|+|+||+ +| +++||.|+.
T Consensus 402 -----~~~c~~~~~-~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~------ 468 (481)
T 3mq4_A 402 -----RGVCPEMEQ-AGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWTD------ 468 (481)
T ss_dssp -------CCHHHHT-SCHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEET------
T ss_pred -----CCCCCCCCC-cCHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEcC------
Confidence 012332211 25899999999999999999 56787 99985 899999998 33 689999972
Q ss_pred ccCCCccccCCccceecC
Q 043276 274 KLSSNSTTKSKLRPIIWP 291 (829)
Q Consensus 274 ~l~~~~~~~~~~~~i~Wp 291 (829)
.|. ++.+.|.|+
T Consensus 469 ~l~------i~~~~i~W~ 480 (481)
T 3mq4_A 469 ELQ------LNIEDMQWG 480 (481)
T ss_dssp TEE------EECSCC---
T ss_pred ccE------ecccccccC
Confidence 233 466789996
No 11
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.97 E-value=8.5e-30 Score=283.71 Aligned_cols=260 Identities=16% Similarity=0.223 Sum_probs=209.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
|+|+|..|+.++++++++|||++|++||+|++||....+.+ +++.+.|+||++.. ++ . ..++..++.+|++++++
T Consensus 119 ~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~-~--~~d~~~~l~~i~~~~~~ 193 (393)
T 3om0_A 119 LYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETLSVRM-LD-D--SRDPTPLLKEIRDDKVS 193 (393)
T ss_dssp SSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCS
T ss_pred ecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-cC-C--CCCHHHHHHHHHhcCCe
Confidence 57999999999999999999999999999999998876655 56788999998764 43 2 34788999999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQ 160 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~ 160 (829)
+||++++.+.+..++++|+++||+..+|+||++++.....+.. .......|++++....+..+.+++|.+.|+++++.
T Consensus 194 vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l~--~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~ 271 (393)
T 3om0_A 194 TIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLD--GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRE 271 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCCT--TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccchh--hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999988899999998765443321 12345678999998888899999999988888764
Q ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccEEE
Q 043276 161 ENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF 240 (829)
Q Consensus 161 ~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~F 240 (829)
.....+...++.+++++||||+++|+|+++++.... ......+|.....|..|..|+++|++++|+|++|++.|
T Consensus 272 ~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~f 345 (393)
T 3om0_A 272 NCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEF 345 (393)
T ss_dssp TSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECB
T ss_pred hccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEe
Confidence 221111124677999999999999999999864321 01122456666667889999999999999999999999
Q ss_pred e-cCccccceEEEEEcc-CCcEEEEEecCCCCccc
Q 043276 241 V-DGQLQSSAFEIINVN-NGARGVGFWSPEKGLTQ 273 (829)
Q Consensus 241 ~-~G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~ 273 (829)
+ +|++....|+|++++ +|+++||+|++..|+..
T Consensus 346 d~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~ 380 (393)
T 3om0_A 346 NSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAM 380 (393)
T ss_dssp CTTSCBCSCEEEEEEEETTEEEEEEEEECC-----
T ss_pred CCCCcccceeEEEEEeccCCceEeeeEcCCCCccc
Confidence 7 999977899999999 88999999999888754
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.97 E-value=6e-30 Score=284.01 Aligned_cols=243 Identities=20% Similarity=0.312 Sum_probs=195.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCc-----------eeeeE-------EecCC-C
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDT-----------RVPYR-------SVISP-L 61 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi-----------~I~~~-------~~i~~-~ 61 (829)
|.|+|..|+.++++++++|||+||++||+|++||++..+.|++++++.|+ ||++. +.++. .
T Consensus 119 ~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~ 198 (384)
T 3qek_A 119 TVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFE 198 (384)
T ss_dssp SSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEEC
T ss_pred ecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccC
Confidence 57999999999999999999999999999999999999999999999987 56654 33321 1
Q ss_pred CChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEecc
Q 043276 62 ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYV 141 (829)
Q Consensus 62 ~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 141 (829)
.++.++...+.+|+++++||||++++.+.+..++++|+++||+..+|+||+++.|.... ...+.++|+++++++.
T Consensus 199 ~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~ 273 (384)
T 3qek_A 199 PGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLIN 273 (384)
T ss_dssp TTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETT
T ss_pred CchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcC
Confidence 22457899999999999999999999999999999999999988889999999986432 2346789999999876
Q ss_pred CCChhHHHHHHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCc-cccCCCChH
Q 043276 142 PKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLE-AFGISQNGP 220 (829)
Q Consensus 142 ~~~~~~~~F~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 220 (829)
++. .++++|||||++|+|||++..+..... .. .+|. ....|..|.
T Consensus 274 ~~~----------------------------~~~~~YdAV~~~a~Al~~~~~~~~~~~---~~---~~c~~~~~~~~~~~ 319 (384)
T 3qek_A 274 GKN----------------------------ESAHISDAVAVVAQAIHELFEMENITD---PP---RGCVGNTNIWKTGP 319 (384)
T ss_dssp TTC----------------------------HHHHHHHHHHHHHHHHHHHHTSSSCCC---CC---SCCTTCCCCCTTHH
T ss_pred CCc----------------------------hhHHHHHHHHHHHHHHHHHHhccCCCC---CC---CccccCCCccccHH
Confidence 532 367899999999999999975532111 11 2232 234677899
Q ss_pred HHHHHHhccce-ecccccEEEe-cCccccceEEEEEcc-CCcEEEEEecCCCCcccccCCCccccCCccceecCCC
Q 043276 221 KLLQALSSIRF-RGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGD 293 (829)
Q Consensus 221 ~l~~~L~~~~f-~G~tG~~~F~-~G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~ 293 (829)
.|.+++++++| +|++|++.|+ +|++....|+|+|++ +++++||+|+.. ++. ++.+.|.||++
T Consensus 320 ~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~~-----~l~------i~~~~i~W~~~ 384 (384)
T 3qek_A 320 LFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNGS-----YII------QNDRKIIWPGG 384 (384)
T ss_dssp HHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEEEEECSS-----SEE------ECSSCCCCSCC
T ss_pred HHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEEEEEeCC-----eEe------eccceeeCCCC
Confidence 99999999998 9999999997 999867899999999 889999999832 232 46678999974
No 13
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.96 E-value=2.1e-29 Score=284.25 Aligned_cols=269 Identities=20% Similarity=0.252 Sum_probs=213.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
|+|+|..|+.++++++++|||++|++||+|++||....+.|.+++++.|+||+..+.++. ++...+.+|++++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----d~~~~l~~i~~~~~~ 208 (433)
T 4f11_A 134 TVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSN-----DPCTSVKKLKGNDVR 208 (433)
T ss_dssp SSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESS-----CCHHHHHHHHHTTCC
T ss_pred ecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCc-----CHHHHHHHHhhCCCe
Confidence 579999999999999999999999999999999999999999999999999999988863 466789999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCc----ccc-------ccccCCccccccccceEEEEeccCCC-----
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG----MTN-------LLRTLEPSVTDSMQGVIGVRPYVPKT----- 144 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~----~~~-------~~~~~~~~~~~~~~g~l~~~~~~~~~----- 144 (829)
|||+++....+..++++|+++||...+|+||.+++ |.. ..........+.++|++++.++.+..
T Consensus 209 vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 288 (433)
T 4f11_A 209 IILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKT 288 (433)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCC
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcc
Confidence 99999999999999999999999887899999998 531 11112223456789999998876532
Q ss_pred ---hhHHHHHHHHHHh-hcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccc--cCCCC
Q 043276 145 ---KALENFRVRWKRK-FLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAF--GISQN 218 (829)
Q Consensus 145 ---~~~~~F~~~w~~~-~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 218 (829)
+..++|.++|+++ ++. .++.++.++||||+++|+||++++.+..... .+..+... ..+..
T Consensus 289 ~~~~~~~~f~~~y~~~~~~~--------~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~------~~~~l~~~~~~~~~~ 354 (433)
T 4f11_A 289 ISGKTPQQYEREYNNKRSGV--------GPSKFHGYAYDGIWVIAKTLQRAMETLHASS------RHQRIQDFNYTDHTL 354 (433)
T ss_dssp TTSCCHHHHHHHHHHHHTTS--------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS------SCCCGGGCSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhcCCC--------CcccchhhHHHHHHHHHHHHHHHHHHHhccC------CCCcccccccccHHH
Confidence 3478899988876 332 4667889999999999999999875421100 00111111 11234
Q ss_pred hHHHHHHHhccceecccccEEEecCccccceEEEEEcc-CCcEEEEEecCCCCcccccCCCccccCCccceecCCCCCCC
Q 043276 219 GPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSD 297 (829)
Q Consensus 219 g~~l~~~L~~~~f~G~tG~~~F~~G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~~~~ 297 (829)
+++|+++|++++|.|++|++.|++|++. ..|+|++++ +++++||+|++... .|. ++.+.|.|||+. +
T Consensus 355 ~~~l~~~l~~~~f~G~tG~v~f~~Gd~~-~~~~I~~~~~g~~~~VG~~~~~~~---~l~------~~~~~i~W~~~~--~ 422 (433)
T 4f11_A 355 GRIILNAMNETNFFGVTGQVVFRNGERM-GTIKFTQFQDSREVKVGEYNAVAD---TLE------IINDTIRFQGSE--P 422 (433)
T ss_dssp HHHHHHHHHTCEEEETTEEEEEETTEEE-CEEEEEEEETTEEEEEEEEETTTT---EEE------ECTTTCCCSSSS--C
T ss_pred HHHHHHHHHhcEEEccceEEEEecCcee-eeEEEEEEECCceEEEEEEECCCC---eEE------EeCCceECCCCC--C
Confidence 7899999999999999999999999986 899999999 66999999986432 232 355689999876 4
Q ss_pred CCC
Q 043276 298 PKG 300 (829)
Q Consensus 298 P~~ 300 (829)
|.+
T Consensus 423 P~D 425 (433)
T 4f11_A 423 PKD 425 (433)
T ss_dssp CCS
T ss_pred CCC
Confidence 444
No 14
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.96 E-value=9.4e-29 Score=279.68 Aligned_cols=261 Identities=15% Similarity=0.182 Sum_probs=200.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccc---hHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEE---LIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM 77 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~---~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~ 77 (829)
|+|+|..|+.++++++++|||+||++||+|++||+. .++.|.+++++.|+||++...++.. ..++...+.+|+ +
T Consensus 134 ~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~-~ 210 (441)
T 1jdp_A 134 VAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK--DLDLEDIVRNIQ-A 210 (441)
T ss_dssp CSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS--CCCHHHHHHHHH-H
T ss_pred ecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc--ccCHHHHHHHhh-c
Confidence 579999999999999999999999999999999999 9999999999999999998777644 236888999999 9
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcC----------ccccccccCCccccccccceEEEEeccCCChhH
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD----------GMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKAL 147 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~----------~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 147 (829)
++||||++++.+.+..++++|+++||....|+||.++ +|.... ...........++.++.++.+.+|++
T Consensus 211 ~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~g~~~~~~~~p~~ 289 (441)
T 1jdp_A 211 SERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGD-KHDFEAKQAYSSLQTVTLLRTVKPEF 289 (441)
T ss_dssp HCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSS-TTHHHHHHHGGGEEEEEECCCCCHHH
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCC-cccHHHHHHHHhheEEeecCCCCchH
Confidence 9999999999999999999999999987789999998 453211 11110113356667777777889999
Q ss_pred HHHHHHHHHhhccc-CCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHH
Q 043276 148 ENFRVRWKRKFLQE-NPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQAL 226 (829)
Q Consensus 148 ~~F~~~w~~~~~~~-~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L 226 (829)
++|.++|+..+... +. ....++.+++++||||+++|+|||++..+.. .+..|++|+++|
T Consensus 290 ~~F~~~~~~~~~~~~~~--~~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~------------------~~~~~~~l~~~l 349 (441)
T 1jdp_A 290 EKFSMEVKSSVEKQGLN--MEDYVNMFVEGFHDAILLYVLALHEVLRAGY------------------SKKDGGKIIQQT 349 (441)
T ss_dssp HHHHHHHHHHHHTTTCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCC--ccchhhhHHHHHHHHHHHHHHHHHHHHHhCC------------------CCCCHHHHHHHH
Confidence 99999998774321 11 1112456889999999999999999864321 012478999999
Q ss_pred hccceecccccEEEe-cCccccceEEEEEcc---CC-cEEEEEecCCCCcccccCCCccccCCccceecCCCC
Q 043276 227 SSIRFRGLTGDYIFV-DGQLQSSAFEIINVN---NG-ARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDS 294 (829)
Q Consensus 227 ~~~~f~G~tG~~~F~-~G~~~~~~y~I~n~~---~g-~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~ 294 (829)
++++|.|++|.+.|+ +|++. ..|+|++++ +| +++||.|++..+.... ....+|+|||+.
T Consensus 350 ~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~~VG~~~~~~~~~~~--------~~~~~i~w~g~~ 413 (441)
T 1jdp_A 350 WNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEVIGDYFGKEGRFEM--------RPNVKYPWGPLK 413 (441)
T ss_dssp SSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEEEEEEETTTTEEEE--------CC----------
T ss_pred hCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceEEEEEEcCCCCeEEE--------CCCceeeCCCCC
Confidence 999999999999997 99986 899999997 45 8999999987663321 123567787754
No 15
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.96 E-value=3e-28 Score=271.44 Aligned_cols=256 Identities=20% Similarity=0.293 Sum_probs=209.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|+|..|+.++++++++|||+||++|| |++||....+.|.+++++.|+||+... ++.+ ..++...+.+|++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~ 193 (395)
T 3h6g_A 118 LYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEF 193 (395)
T ss_dssp EEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCC
T ss_pred ecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCe
Confidence 3689999999999999999999999998 788999999999999999999999875 7655 56899999999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccc--eEEEEeccCCChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQG--VIGVRPYVPKTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g--~l~~~~~~~~~~~~~~F~~~w~~~~ 158 (829)
+||+++..+.+..++++|+++||+..+|+||+++......+... . ...| +.++.+..+.++..++|.++|++++
T Consensus 194 vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 269 (395)
T 3h6g_A 194 HVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEP--Y--RYSGVNMTGFRILNTENTQVSSIIEKWSMER 269 (395)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCTT--T--TTSCCEEEEEECSCTTSHHHHHHHHHHHHC-
T ss_pred EEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechHH--h--ccCccceEEEEEecCCcHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999864322222111 1 1234 5788888888999999999999876
Q ss_pred cccCCCCCc----cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecc
Q 043276 159 LQENPSLFD----AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGL 234 (829)
Q Consensus 159 ~~~~~~~~~----~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~ 234 (829)
....|.... ..++.+++++||||+++|+|+++++.... ...+|...+.|..|..|.++|++++|+|+
T Consensus 270 ~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~---------~~~~c~~~~~~~~~~~l~~al~~~~~~G~ 340 (395)
T 3h6g_A 270 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV---------SSLQCNRHKPWRFGTRFMSLIKEAHWEGL 340 (395)
T ss_dssp -----CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC---------CCCCTTSCCCCTTHHHHHHHHHHCEEEET
T ss_pred cccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCC---------cCCCCCCCCcCcccHHHHHHHhcCCCcCc
Confidence 543332111 12567999999999999999999864321 11346655677889999999999999999
Q ss_pred cccEEE-e-cCccccceEEEEEcc-CCcEEEEEecCCCCccc
Q 043276 235 TGDYIF-V-DGQLQSSAFEIINVN-NGARGVGFWSPEKGLTQ 273 (829)
Q Consensus 235 tG~~~F-~-~G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~ 273 (829)
+|++.| + +|++....|+|++++ +|+++||+|++..|+..
T Consensus 341 tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 382 (395)
T 3h6g_A 341 TGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNM 382 (395)
T ss_dssp TEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECC
T ss_pred ceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCccc
Confidence 999999 4 899987799999999 88999999999888764
No 16
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.96 E-value=6.7e-28 Score=272.14 Aligned_cols=264 Identities=17% Similarity=0.183 Sum_probs=211.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEE------EEeCccccchHHHHHHHHHh-CCceeeeEEecCCCCChhHHHHHHHH
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPI------YVDNQYGEELIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYK 73 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI------~~dd~yG~~~~~~l~~~l~~-~gi~I~~~~~i~~~~~~~~~~~~l~~ 73 (829)
|+|+|..|+.++++++++|||+||++| ++|++|| ..++.+.+++++ .|+||++...++. +..++...+.+
T Consensus 126 ~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~ 202 (435)
T 1dp4_A 126 TGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEG--DPDHYPKLLRA 202 (435)
T ss_dssp CSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT--CGGGHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecC--chhhHHHHHHH
Confidence 679999999999999999999999999 7788899 567888889988 9999999877643 35679999999
Q ss_pred hhcCCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccc---------c------CCccccccccceEEEE
Q 043276 74 LFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLR---------T------LEPSVTDSMQGVIGVR 138 (829)
Q Consensus 74 lk~~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~---------~------~~~~~~~~~~g~l~~~ 138 (829)
|++ ++||||+++..+.+..++++|+++||...+|+||.++.|..... . ......+.++|++++.
T Consensus 203 i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (435)
T 1dp4_A 203 VRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIIT 281 (435)
T ss_dssp HHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEE
T ss_pred HHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEe
Confidence 998 99999999999999999999999999766799999998875321 0 0012335678999988
Q ss_pred eccCCChhHHHHHHHHHHhhc----ccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCcccc
Q 043276 139 PYVPKTKALENFRVRWKRKFL----QENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFG 214 (829)
Q Consensus 139 ~~~~~~~~~~~F~~~w~~~~~----~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (829)
+..+..+.+++|.++|++.++ |... ...++.+++++||||+++|+||+++..+..
T Consensus 282 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ydav~~~a~Al~~~~~~~~------------------ 340 (435)
T 1dp4_A 282 YKEPDNPEYLEFLKQLKLLADKKFNFTVE---DGLKNIIPASFHDGLLLYVQAVTETLAQGG------------------ 340 (435)
T ss_dssp ECCCCSHHHHHHHHHHHHHHHHHHCCCCC---CSGGGHHHHHHHHHHHHHHHHHHHHHHTTC------------------
T ss_pred cCCCCChhHHHHHHHHHHHhcCCCCcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHcCC------------------
Confidence 877888899999988877653 3211 113567899999999999999999864321
Q ss_pred CCCChHHHHHHHhccceecccccEEEe-cCccccceEEEEEcc--CC-cEEEEEecCCCCcccccCCCccccC-Ccccee
Q 043276 215 ISQNGPKLLQALSSIRFRGLTGDYIFV-DGQLQSSAFEIINVN--NG-ARGVGFWSPEKGLTQKLSSNSTTKS-KLRPII 289 (829)
Q Consensus 215 ~~~~g~~l~~~L~~~~f~G~tG~~~F~-~G~~~~~~y~I~n~~--~g-~~~VG~w~~~~g~~~~l~~~~~~~~-~~~~i~ 289 (829)
...++++|+++|++++|.|++|.+.|+ +|++. +.|+|+++. +| ++.||.|++..+ .+. + +.+.|+
T Consensus 341 ~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~---~l~------~~~~~~i~ 410 (435)
T 1dp4_A 341 TVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQ---ELM------AVSEHKLY 410 (435)
T ss_dssp CTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTTTCCEEEEEEECTTTC---CEE------ESTTCCCC
T ss_pred CCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecCCCCcEEEEEEecCCCc---eEE------EcCCceee
Confidence 012378999999999999999999997 99986 799999994 45 999999998765 221 2 457899
Q ss_pred cCCCCCCCCCCc
Q 043276 290 WPGDSTSDPKGW 301 (829)
Q Consensus 290 Wpg~~~~~P~~~ 301 (829)
||++ ++|++.
T Consensus 411 W~~~--~~P~~~ 420 (435)
T 1dp4_A 411 WPLG--YPPPDV 420 (435)
T ss_dssp CTTS--SCCCSS
T ss_pred CCCC--CCCCCC
Confidence 9987 556554
No 17
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=9.2e-27 Score=250.59 Aligned_cols=279 Identities=19% Similarity=0.366 Sum_probs=193.8
Q ss_pred CCCceEEEecccccCccceEEEee--cCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCC---CCChhHHHH
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTI--DPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTS---SGSYNDLIY 379 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~--~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~---ng~~~~li~ 379 (829)
...++||||+... +||.+.+. +..++++++.||++||+++|++++|+++++..++.. .+|.. +++|++++.
T Consensus 10 ~~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 10 LSNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDG-KYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp TCSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSC-CCCCBCTTTCCBCSHHH
T ss_pred hcCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCC-ccceeccCCCcchHHHH
Confidence 3468899999843 56776541 011136789999999999999999986555543322 22321 578999999
Q ss_pred hHhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhc
Q 043276 380 QVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEH 459 (829)
Q Consensus 380 ~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~ 459 (829)
+|.+|++|++++++++|++|.+.++||.||+.++.+++++++.....++|.|+.||+..
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~--------------------- 144 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV--------------------- 144 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC---------------------------------------
T ss_pred HHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC---------------------
Confidence 99999999999999999999999999999999999999998765567899999999810
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHH
Q 043276 460 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLI 539 (829)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~ 539 (829)
|+ |++++...|++++||.
T Consensus 145 --------------------------------p~------------------------------tv~~~~~~i~~~~dL~ 162 (312)
T 1yae_A 145 --------------------------------PR------------------------------GSERMESPIDSADDLA 162 (312)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred --------------------------------Cc------------------------------ccccccCCCCCHHHHh
Confidence 00 5566677899999997
Q ss_pred hC-CCcEEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC
Q 043276 540 KR-GDNVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC 607 (829)
Q Consensus 540 ~~-~~~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c 607 (829)
.. +.++|++.+++...++.+..++. .++..+.+.++++++|.+|+ ||++.+...+.|++++.|
T Consensus 163 g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-----Da~i~~~~~~~~~~~~~~ 237 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNC 237 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-----EEEEEEHHHHHHHHTTCT
T ss_pred hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-----cEEEeccHHHHHHHhcCC
Confidence 33 12799877766677776543321 24567889999999999986 788889999999998888
Q ss_pred CceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCCCCCCcccccccccc
Q 043276 608 SKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLN 678 (829)
Q Consensus 608 ~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~L~l~ 678 (829)
+ +.+++..+...+++|+++|++||++.||++|.+|.++|.+++|.+||+.. ..|...... +...++++
T Consensus 238 ~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~~ 305 (312)
T 1yae_A 238 N-LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGVQ 305 (312)
T ss_dssp T-EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC---------------
T ss_pred C-EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhhh
Confidence 5 88998888888999999999999999999999999999999999999975 589875532 44455543
No 18
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=6.2e-26 Score=240.62 Aligned_cols=243 Identities=21% Similarity=0.331 Sum_probs=189.5
Q ss_pred CCCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC-CCCChhHHHHhHh
Q 043276 304 PTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT-SSGSYNDLIYQVF 382 (829)
Q Consensus 304 p~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~-~ng~~~~li~~l~ 382 (829)
|.++++|||||+..++|++|.... ++.++.+++.||++||++++++++|+++++...+.+ .+|. .+++|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~-~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTN-EGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNG-KHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSS-CEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSS-SSCCEETTEECHHHHHHH
T ss_pred CCCCcccccccccccccccccccc-CCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCC-ccCcccCCCHHHHHHHHh
Confidence 456889999999888887774311 111223579999999999999999985544433321 2232 4578999999999
Q ss_pred cCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccC
Q 043276 383 LGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVN 462 (829)
Q Consensus 383 ~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~ 462 (829)
+|++|+++++++++++|.+.++||.||+.++.+++++++..
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~--------------------------------------- 143 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQ--------------------------------------- 143 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCC---------------------------------------
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcc---------------------------------------
Confidence 99999999999999999999999999999999999996642
Q ss_pred CCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHh--
Q 043276 463 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIK-- 540 (829)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~-- 540 (829)
+++++||..
T Consensus 144 ---------------------------------------------------------------------~~~~~dl~~~~ 154 (284)
T 2a5s_A 144 ---------------------------------------------------------------------VTGLSDKKFQR 154 (284)
T ss_dssp ---------------------------------------------------------------------CCSTTSHHHHS
T ss_pred ---------------------------------------------------------------------cccccccccCC
Confidence 233333321
Q ss_pred -----CCCcEEEEeCchHHHHHHhcCCCcc--ceeec--CChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC--CCc
Q 043276 541 -----RGDNVGYQKGSFVLGILKQLGFDER--KLVVY--NSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH--CSK 609 (829)
Q Consensus 541 -----~~~~vg~~~~s~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--c~~ 609 (829)
.+.++|++.+++....+.+. ++.. .++.+ ++.++++++|.+|+ +||++.+...+.++++++ |+
T Consensus 155 ~~~l~~~~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~~~~~~- 228 (284)
T 2a5s_A 155 PHDYSPPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGCK- 228 (284)
T ss_dssp GGGSSSCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTSC-
T ss_pred hhHcCCCceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhcCCCCC-
Confidence 26689987655556666542 3322 34555 78999999999999 999999999999999876 74
Q ss_pred eEEeC--cccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 610 YTMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 610 l~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
+.+++ ..+...+++|+++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 229 l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~--~~c~ 283 (284)
T 2a5s_A 229 LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT--GICH 283 (284)
T ss_dssp EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC--CCCC
T ss_pred EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh--ccCC
Confidence 77774 56778899999999999999999999999999999999999995 4785
No 19
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=1.3e-24 Score=226.84 Aligned_cols=240 Identities=20% Similarity=0.386 Sum_probs=194.0
Q ss_pred CCceEEEecccccCccceEEEeec--CCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC---CCCChhHHHHh
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTID--PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT---SSGSYNDLIYQ 380 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~--~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~---~ng~~~~li~~ 380 (829)
.+++||||+... +||.+.+.+ +.++++++.||++||++++++++|++++++.++.+ ..|. .+++|++++.+
T Consensus 2 ~~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~-~~g~~~~~~~~~~~~~~~ 77 (259)
T 3g3k_A 2 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDG-KYGAQDDVNGQWNGMVRE 77 (259)
T ss_dssp -CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCBCTTTCCBCHHHHH
T ss_pred CCcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCC-CcCcccCCCCcchHHHHH
Confidence 467899999854 467776532 12346899999999999999999987666655532 1222 14689999999
Q ss_pred HhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcc
Q 043276 381 VFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHR 460 (829)
Q Consensus 381 l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~ 460 (829)
|.+|++|++++++++|++|.+.++||.||+.++.++++++...
T Consensus 78 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~------------------------------------- 120 (259)
T 3g3k_A 78 LIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP------------------------------------- 120 (259)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS-------------------------------------
T ss_pred HhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc-------------------------------------
Confidence 9999999999999999999999999999999999999986531
Q ss_pred cCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHh
Q 043276 461 VNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIK 540 (829)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~ 540 (829)
|++++||..
T Consensus 121 -----------------------------------------------------------------------i~~~~dL~g 129 (259)
T 3g3k_A 121 -----------------------------------------------------------------------IDSADDLAK 129 (259)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred -----------------------------------------------------------------------ccCHHHhcc
Confidence 688999963
Q ss_pred C-CCcEEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCC
Q 043276 541 R-GDNVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCS 608 (829)
Q Consensus 541 ~-~~~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~ 608 (829)
. +.++|+..++....++.+...+. ..++.+++.++++++|..|+ +|++.+...+.|+.++.|+
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~~~~ 204 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNCN 204 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHHCTT
T ss_pred CCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcCCce
Confidence 2 12389888888888877643321 13456789999999999996 7889999999999988885
Q ss_pred ceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 609 KYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 609 ~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
+.+++..+...+++|+++|++||++.||++|.+|.++|.+++|.+||++ ...|+
T Consensus 205 -l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~-~~~c~ 258 (259)
T 3g3k_A 205 -LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR-GNGCP 258 (259)
T ss_dssp -EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHC-C--CC
T ss_pred -EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcC-CCCCC
Confidence 8899988888899999999999999999999999999999999999998 45686
No 20
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.92 E-value=1.5e-24 Score=224.34 Aligned_cols=223 Identities=22% Similarity=0.298 Sum_probs=191.2
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++|+||+. +.|+||.+.+. .++++++.||++||+++|++++|+ ++++++. .|++++.+|.+|++
T Consensus 11 ~g~L~Vg~~--~~~pP~~~~~~--~d~~g~~~G~~vdl~~~ia~~lg~--~~~~~~~---------~~~~~~~~l~~g~~ 75 (243)
T 4h5g_A 11 KGKLVVATS--PDYAPFEFQSL--VDGKNQVVGADIDMAQAIADELGV--KLEILSM---------SFDNVLTSLQTGKA 75 (243)
T ss_dssp HTEEEEEEC--CCBTTTBEEEE--ETTEEEEESHHHHHHHHHHHHHTS--EEEEEEC---------CGGGHHHHHHTTSC
T ss_pred CCEEEEEEC--CCCCCcEeeec--cCCCCcEEEeHHHHHHHHHHHhCC--ceEEecc---------cHHHHHHHHHcCCC
Confidence 468999986 77889987531 125789999999999999999997 4556654 59999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|++++++++|++|.+.++||.||+.++.++++++.+...
T Consensus 76 d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~----------------------------------------- 114 (243)
T 4h5g_A 76 DLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK----------------------------------------- 114 (243)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT-----------------------------------------
T ss_pred CcccccccCChhHccEEEccCccccCccccccccccccc-----------------------------------------
Confidence 999999999999999999999999999999998765432
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
+++++||. |++||
T Consensus 115 -----------------------------------------------------------------~~~~~dl~--g~~i~ 127 (243)
T 4h5g_A 115 -----------------------------------------------------------------YKDLTSLE--SANIA 127 (243)
T ss_dssp -----------------------------------------------------------------CCSHHHHH--TSEEE
T ss_pred -----------------------------------------------------------------ccccccCC--CCEEE
Confidence 68899995 88999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEE--e-CcccccCCce
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTM--V-EPTFKTAGFG 623 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~--v-~~~~~~~~~~ 623 (829)
+..|+....++++. ++..+++.+++.++++++|.+|+ +|+++.+...+.+++.++.. +.. + .......+++
T Consensus 128 v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~Gr----vD~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 201 (243)
T 4h5g_A 128 AQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQAGK----IDAVHMDEPVALSYAAKNAG-LAVATVSLKMKDGDANA 201 (243)
T ss_dssp EETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHCTT-EEECSCCCCCCSSCCBC
T ss_pred ecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHHCCC-CceeeccCCcccCceEE
Confidence 99999998888774 56778899999999999999999 99999999988888877653 322 2 3344556789
Q ss_pred eeecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 624 FAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 624 ~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
|+++|++| |++.||++|.+|+++|.+++|.+||+.
T Consensus 202 ~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 202 VALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999998 999999999999999999999999985
No 21
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=3.8e-25 Score=235.44 Aligned_cols=236 Identities=20% Similarity=0.327 Sum_probs=187.5
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC---C----CCChhHHHH
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT---S----SGSYNDLIY 379 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~---~----ng~~~~li~ 379 (829)
.+.++||+. +.|+||.+.+. ++++.|||+||+++|++++|+++++..++.+ .+|. . +++|++++.
T Consensus 40 ~~~l~vg~~--~~~~P~~~~~~-----~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~-~~g~~~~~~~~~~~~w~~~~~ 111 (292)
T 1pb7_A 40 KKVICTGPN--DTSPGSPRHTV-----PQCCYGFCIDLLIKLARTMNFTYEVHLVADG-KFGTQERVNNSNKKEWNGMMG 111 (292)
T ss_dssp CCEEEEEEC----------CEE-----EEEEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCEEECTTSSCEEECHHHH
T ss_pred cceeecccC--CCCCCcccccc-----ccCcceeHHHHHHHHHHHcCceEEEEEecCC-cccccccccccccCcHHHHHH
Confidence 477888876 55667766542 6789999999999999999986555443322 3332 1 258999999
Q ss_pred hHhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhc
Q 043276 380 QVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEH 459 (829)
Q Consensus 380 ~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~ 459 (829)
+|.+|++|++++++++|++|.+.++||.||+.++.+++++++..
T Consensus 112 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~------------------------------------ 155 (292)
T 1pb7_A 112 ELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR------------------------------------ 155 (292)
T ss_dssp HHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC------------------------------------
T ss_pred HHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC------------------------------------
Confidence 99999999999999999999999999999999999999996532
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHH
Q 043276 460 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLI 539 (829)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~ 539 (829)
+++++||.
T Consensus 156 ------------------------------------------------------------------------i~~~~dl~ 163 (292)
T 1pb7_A 156 ------------------------------------------------------------------------ITGINDPR 163 (292)
T ss_dssp ------------------------------------------------------------------------CCSTTCHH
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 45677775
Q ss_pred hCCC---c-EEEEeCchHHHHHHhc-C----CCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCce
Q 043276 540 KRGD---N-VGYQKGSFVLGILKQL-G----FDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKY 610 (829)
Q Consensus 540 ~~~~---~-vg~~~~s~~~~~l~~~-~----~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l 610 (829)
..+. + +|+..++....++++. . .+..++..+.+.++++++|.+|+ +||++.+...+.|+++++|+ +
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~~-l 238 (292)
T 1pb7_A 164 LRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCD-L 238 (292)
T ss_dssp HHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-E
T ss_pred ccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCCC-E
Confidence 3342 3 5788888877777542 0 11234567889999999999999 99999999999999999995 8
Q ss_pred EEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 611 TMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 611 ~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
.+++..+...+++|+++|++||++.||++|.++.++|.+++|.+||+. ...|.
T Consensus 239 ~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~ 291 (292)
T 1pb7_A 239 VTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECD 291 (292)
T ss_dssp EECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCC
T ss_pred EEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCC-CCCCC
Confidence 889888888899999999999999999999999999999999999997 46786
No 22
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=3.1e-24 Score=221.92 Aligned_cols=224 Identities=15% Similarity=0.215 Sum_probs=185.0
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHC-CCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l-~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
..++|+||+. +.|+||.+.+ .++++.||++||+++|+++| |+ ++++++. .|++++..|.+|
T Consensus 7 ~~~tl~vg~~--~~~pP~~~~d-----~~G~~~G~~vdl~~~ia~~l~g~--~~~~~~~---------~~~~~~~~l~~g 68 (243)
T 4gvo_A 7 KVQTITVGTG--TQFPNVCFLD-----ENGKLTGYDVELVKEIDKRLPGY--KFKFKTM---------DFSNLLVSLGAG 68 (243)
T ss_dssp -CEEEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHTCTTE--EEEEEEC---------CGGGHHHHHHTT
T ss_pred cCCeEEEEEC--CCCCCeEEEC-----CCCcEEEhHHHHHHHHHHhccCC--eEEEEEC---------CHHHHHHHHHCC
Confidence 4678999987 6789999876 36889999999999999998 76 5556653 599999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNED 464 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 464 (829)
++|++++++++|++|.+.++||.||+.....+++.++....
T Consensus 69 ~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 109 (243)
T 4gvo_A 69 KVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS--------------------------------------- 109 (243)
T ss_dssp SCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCS---------------------------------------
T ss_pred CCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccc---------------------------------------
Confidence 99999999999999999999999987766555544343322
Q ss_pred CCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCc
Q 043276 465 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDN 544 (829)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~ 544 (829)
+++++|| .|++
T Consensus 110 -------------------------------------------------------------------~~~~~dL--~g~~ 120 (243)
T 4gvo_A 110 -------------------------------------------------------------------INSTKDL--AGKR 120 (243)
T ss_dssp -------------------------------------------------------------------CSSGGGG--TTCE
T ss_pred -------------------------------------------------------------------cCchHHh--cCCe
Confidence 7899999 5899
Q ss_pred EEEEeCchHHHHHHh----cCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccC
Q 043276 545 VGYQKGSFVLGILKQ----LGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTA 620 (829)
Q Consensus 545 vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~ 620 (829)
+|+..|+....++++ ..........+.+.++++++|..|+ +||++.+...+.++.++....+.++++.+...
T Consensus 121 v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (243)
T 4gvo_A 121 VITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSNA 196 (243)
T ss_dssp EEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEECC
T ss_pred EEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCCC
Confidence 999999877766653 2222222345677889999999999 99999999999888887654577888888888
Q ss_pred CceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 621 GFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 621 ~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
+++++++|++| |++.||++|.+|.++|.+++|.+|||+.
T Consensus 197 ~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 197 KVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp EECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 99999999988 9999999999999999999999999963
No 23
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=2.8e-24 Score=229.01 Aligned_cols=214 Identities=20% Similarity=0.371 Sum_probs=176.2
Q ss_pred eEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC-CCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccce
Q 043276 336 SVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT-SSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGV 414 (829)
Q Consensus 336 ~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~-~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~ 414 (829)
++.||++||+++|++++|+++++..++. ..+|. .+++|++++.+|.+|++|++++++++|++|.+.++||.||+.++.
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~-~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~ 145 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGD-GKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSL 145 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTT-CCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCC-CcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcce
Confidence 4899999999999999997554443321 12222 456899999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcCcccccc
Q 043276 415 SMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVIS 494 (829)
Q Consensus 415 ~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 494 (829)
+++++++...
T Consensus 146 ~i~~~~~~~~---------------------------------------------------------------------- 155 (294)
T 2rc8_A 146 GILVRTRGTE---------------------------------------------------------------------- 155 (294)
T ss_dssp EEEEETTSCC----------------------------------------------------------------------
T ss_pred EEEEECCCCC----------------------------------------------------------------------
Confidence 9999965421
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHH----hCCCcEEEEeCchHHHHHHhcCCCc----cc
Q 043276 495 NLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLI----KRGDNVGYQKGSFVLGILKQLGFDE----RK 566 (829)
Q Consensus 495 ~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~----~~~~~vg~~~~s~~~~~l~~~~~~~----~~ 566 (829)
|++++||. ..++++|+..|+....++++. ++. .+
T Consensus 156 -------------------------------------i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~ 197 (294)
T 2rc8_A 156 -------------------------------------LSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMR 197 (294)
T ss_dssp -------------------------------------CCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHG
T ss_pred -------------------------------------cCChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHH
Confidence 57788885 237799999999988888764 222 12
Q ss_pred eeecCChHHHHHHHhc--CCcCCceeEEEcchhHHHHHHhcC--CCceEEeCcccccCCceeeecCCCCchhhHHHHHHh
Q 043276 567 LVVYNSHEECDELFQK--GSANGGIAAAFDEIPYAKLLIGQH--CSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILN 642 (829)
Q Consensus 567 ~~~~~~~~~~~~~l~~--g~~~~g~~a~~~~~~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~ 642 (829)
...+.+.++++++|.+ |+ +||++.+...+.|++++. |+ +.+++..+...+++|+++|+++|++.||++|.+
T Consensus 198 ~~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~ 272 (294)
T 2rc8_A 198 RYNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQ 272 (294)
T ss_dssp GGCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHH
Confidence 2356889999999999 88 999999999999998864 64 888888888889999999999999999999999
Q ss_pred hhccChhHHHHHHHccCCCCCC
Q 043276 643 VTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 643 l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
+.++|.+++|.+||+. ...|+
T Consensus 273 l~~~G~~~~l~~kw~~-~~~c~ 293 (294)
T 2rc8_A 273 YKSHGFMDVLHDKWYK-VVPCG 293 (294)
T ss_dssp HHHTTHHHHHHHHHCC-C----
T ss_pred HHhCCCHHHHHHhhcC-CCCCC
Confidence 9999999999999997 56775
No 24
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.90 E-value=3.4e-23 Score=216.59 Aligned_cols=240 Identities=23% Similarity=0.306 Sum_probs=186.4
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC--CCCChhHHHHhHhcC
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT--SSGSYNDLIYQVFLG 384 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~--~ng~~~~li~~l~~g 384 (829)
+++|||++... +||.+.+.++....+++.||++||++++++++|+++++...+.+ ..|. .+++|++++.+|.+|
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDH-KYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTC-CCCCBCTTSCBCHHHHHHHTT
T ss_pred CeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCcchHHHHHHcC
Confidence 67899999844 57777664332223789999999999999999985544433221 1222 346899999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNED 464 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 464 (829)
++|++++++++|++|.+.++||.||+..+.++++++...
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 116 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS----------------------------------------- 116 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC-----------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCC-----------------------------------------
Confidence 999999899999999999999999999999999985431
Q ss_pred CCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhC-CC
Q 043276 465 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKR-GD 543 (829)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~-~~ 543 (829)
|++++||.+. +.
T Consensus 117 -------------------------------------------------------------------i~~~~dL~~~v~v 129 (265)
T 2v3u_A 117 -------------------------------------------------------------------IQSLQDLSKQTDI 129 (265)
T ss_dssp -------------------------------------------------------------------CCSHHHHHTCSSS
T ss_pred -------------------------------------------------------------------ccchhhhhhhhcE
Confidence 6889999721 22
Q ss_pred cEEEEeCchHHHHHHhcCCCcc------------------ceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhc
Q 043276 544 NVGYQKGSFVLGILKQLGFDER------------------KLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQ 605 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~ 605 (829)
..|...++....++++.+.... ++..+.+.++++++|.+|+ + |++.+...+.+++++
T Consensus 130 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~~~ 204 (265)
T 2v3u_A 130 PYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVAIN 204 (265)
T ss_dssp CEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHHhc
Confidence 4555666666777765433221 2346789999999999999 8 888888888888775
Q ss_pred C--CCceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 606 H--CSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 606 ~--c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
. | .+.+++..+...+++|+++|++||++.||++|.+|.++|.+++|.+||+.....|.
T Consensus 205 ~~~~-~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 205 DPDC-SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CTTC-CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred CCCc-cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 4 5 48888888888889999999999999999999999999999999999999888885
No 25
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.89 E-value=8.4e-23 Score=211.11 Aligned_cols=230 Identities=20% Similarity=0.333 Sum_probs=199.5
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++||||+. +.|+||.+.+ .++++.|+++||++++++++|++ ++++.. .|.+++.+|.+|+
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 64 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKD-----KKGNVIGFDVDLAREMAKAMGVK--LKLVPT---------SWDGLIPGLVTEK 64 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEE-----TTTEEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHTTS
T ss_pred cCCeEEEEEC--CCcCCeeEEC-----CCCCCccchHHHHHHHHHHhCCe--EEEEEc---------cHHHHHHHHhCCC
Confidence 3578999998 6788898875 36789999999999999999974 555553 4999999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|+++++++.+++|.+.++||.||...+.++++++.....
T Consensus 65 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~---------------------------------------- 104 (245)
T 3k4u_A 65 FDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKG---------------------------------------- 104 (245)
T ss_dssp CSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTT----------------------------------------
T ss_pred cCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccc----------------------------------------
Confidence 9999889999999999999999999999999999664322
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
+++++||...++++
T Consensus 105 ------------------------------------------------------------------i~~~~dL~~~g~~i 118 (245)
T 3k4u_A 105 ------------------------------------------------------------------VKSYKDLDKPELTL 118 (245)
T ss_dssp ------------------------------------------------------------------CCSGGGGCCSSCEE
T ss_pred ------------------------------------------------------------------cCCHHHhccCCcEE
Confidence 78999996558899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccccCCcee
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFKTAGFGF 624 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~ 624 (829)
|+..|+....++++. ++..+++.+++.++++++|.+|+ +|+++.+...+.+++++.. ..+..++..+...++++
T Consensus 119 ~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (245)
T 3k4u_A 119 VTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGW 193 (245)
T ss_dssp EEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECC
T ss_pred EEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEE
Confidence 999999999988774 55678889999999999999999 9999999999998877764 35777788888889999
Q ss_pred eecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 625 AFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 625 ~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
+++|++| |++.||++|.++.++|.+++|.+||+....-+.
T Consensus 194 ~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~ 234 (245)
T 3k4u_A 194 AIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLE 234 (245)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSGGG
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCccccch
Confidence 9999999 999999999999999999999999997654443
No 26
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.89 E-value=1.1e-22 Score=208.97 Aligned_cols=224 Identities=19% Similarity=0.319 Sum_probs=190.9
Q ss_pred CceEEEecccccCccceEEE-eecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 307 EKKLRVGVPVKKGFSDFVKV-TIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~-~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
.++||||+. +.|+||.+. + .++++.|+++||++++++++|+++ +++.. .|.+++.+|.+|+
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~---------~~~~~~~~l~~g~ 63 (237)
T 3kzg_A 2 SLNLTIGTS--KFNPPFEVWSG-----NNSSLYGFDIDLMQEICRRLHATC--TFEAY---------IFDDLFPALKNRE 63 (237)
T ss_dssp CCEEEEEEE--SEETTTEECCC-----TTSCCBSHHHHHHHHHHHHTTCEE--EEEEE---------CGGGHHHHHHTTS
T ss_pred CceEEEEEC--CCCCCeEEEeC-----CCCCEeeehHHHHHHHHHHhCCce--EEEEc---------CHHHHHHHHhCCC
Confidence 468999998 568899986 4 367899999999999999999755 44443 4899999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|+++++++.+++|.+.++||.||...+.++++++...
T Consensus 64 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------ 101 (237)
T 3kzg_A 64 VDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK------------------------------------------ 101 (237)
T ss_dssp SSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS------------------------------------------
T ss_pred CCEEEEccccChhHhccceeeeeeeecceEEEEECCCC------------------------------------------
Confidence 99999899999999999999999999999999985532
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
+++++|| .|+++
T Consensus 102 ------------------------------------------------------------------~~~~~dL--~g~~i 113 (237)
T 3kzg_A 102 ------------------------------------------------------------------ISTFDDL--HGKKI 113 (237)
T ss_dssp ------------------------------------------------------------------CCSGGGG--TTCEE
T ss_pred ------------------------------------------------------------------CCCHHHh--CCCEE
Confidence 5889999 48899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC------C-ceEEeCccc-
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC------S-KYTMVEPTF- 617 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c------~-~l~~v~~~~- 617 (829)
|+..|+....++.+. ++..+++.+.+.++++++|.+|+ +|+++.+...+.+++++.. . .+.+++..+
T Consensus 114 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 188 (237)
T 3kzg_A 114 GVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKIS 188 (237)
T ss_dssp EEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEE
T ss_pred EEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCccc
Confidence 999999877777653 45568889999999999999999 9999999999999998855 2 588888777
Q ss_pred ccCCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCCCCC
Q 043276 618 KTAGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 663 (829)
Q Consensus 618 ~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~~~c 663 (829)
...+++++++|++| +++.||++|.++.++|.+++|.+||+.....|
T Consensus 189 ~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 189 IGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp CTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred cCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 88899999999977 99999999999999999999999999765444
No 27
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.89 E-value=1.7e-22 Score=211.23 Aligned_cols=238 Identities=18% Similarity=0.297 Sum_probs=187.3
Q ss_pred CCceEEEecccccCccceEEEeec--CCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCC-CCCC--CCC-ChhHHHH
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTID--PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQ-PDGT--SSG-SYNDLIY 379 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~--~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~-~~g~--~ng-~~~~li~ 379 (829)
.+++|+|++. +|+||.+.+.+ +..+++++.||++||+++|++++|+++ +++.... ..|. .++ +|++++.
T Consensus 2 ~~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~--~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 2 ANKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKY--KLTIVGDGKYGARDADTKIWNGMVG 76 (263)
T ss_dssp -CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCE--EEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CCeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceE--EEEEccccccCccCCCCCCcHHHHH
Confidence 4678999987 36778876531 112247899999999999999999855 4554421 1121 223 7999999
Q ss_pred hHhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhc
Q 043276 380 QVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEH 459 (829)
Q Consensus 380 ~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~ 459 (829)
+|.+|++|++++++++|++|.+.++||.||+..+.++++++...
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 120 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP------------------------------------ 120 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS------------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc------------------------------------
Confidence 99999999999889999999999999999999999999985431
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHH
Q 043276 460 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLI 539 (829)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~ 539 (829)
|++++||.
T Consensus 121 ------------------------------------------------------------------------i~~~~dL~ 128 (263)
T 1mqi_A 121 ------------------------------------------------------------------------IESAEDLS 128 (263)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ------------------------------------------------------------------------cCCHHHHh
Confidence 68899996
Q ss_pred hCCCc---EEEEeCchHHHHHHhcCCC-----------ccceeecCChHHHHHHH--hcCCcCCceeEEEcchhHHHHHH
Q 043276 540 KRGDN---VGYQKGSFVLGILKQLGFD-----------ERKLVVYNSHEECDELF--QKGSANGGIAAAFDEIPYAKLLI 603 (829)
Q Consensus 540 ~~~~~---vg~~~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~~g~~a~~~~~~~~~~~~ 603 (829)
|++ +|++.+++...++.+..++ ...++.+.+.++++++| ..|+ +|++.+...+.++.
T Consensus 129 --g~~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~~ 201 (263)
T 1mqi_A 129 --KQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYIE 201 (263)
T ss_dssp --TCSSSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHHT
T ss_pred --cccCeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHHH
Confidence 555 6755544444555443322 12466788999999999 7776 58888888888888
Q ss_pred hcC-CCceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 604 GQH-CSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 604 ~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
++. | .+.+++..+...+++|+++|+++|++.||++|.+|.++|.+++|.+||+.....|+
T Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 202 QRKPC-DTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TSTTC-CEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred hcCCC-ceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 776 5 47778888888889999999999999999999999999999999999999888997
No 28
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.88 E-value=1.9e-22 Score=206.82 Aligned_cols=219 Identities=18% Similarity=0.321 Sum_probs=187.6
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.||++||++++++++|++ ++++.. +|.+++.+|.+|++
T Consensus 4 a~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 65 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFIN-----DAGEVDGFERELGDELCKRAGLT--CEWVKN---------DWDSIIPNLVSGNY 65 (232)
T ss_dssp --CEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHHTCC--EEEEEC---------CGGGHHHHHHTTSC
T ss_pred CCEEEEEEC--CCCCCeeEEC-----CCCCEeeehHHHHHHHHHHcCCc--eEEEEC---------CHHHHHHHHHCCCC
Confidence 468999987 6788899865 36789999999999999999975 455553 59999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.|++|.+.++||.||+..+.++++++..
T Consensus 66 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------- 101 (232)
T 3i6v_A 66 DTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------- 101 (232)
T ss_dssp SEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------
T ss_pred CEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------
Confidence 999999999999999999999999999999998442
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
++|| .| ++|
T Consensus 102 --------------------------------------------------------------------~~dL--~g-~ig 110 (232)
T 3i6v_A 102 --------------------------------------------------------------------GADL--SG-IVA 110 (232)
T ss_dssp --------------------------------------------------------------------TCCT--TS-EEE
T ss_pred --------------------------------------------------------------------hHHh--CC-CEE
Confidence 3456 47 999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCc-ccccCCceee
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEP-TFKTAGFGFA 625 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~-~~~~~~~~~~ 625 (829)
+..|+....++++. ..+++.+++.++++++|.+|+ +|+++.+...+.+++++....+.+++. .+...+++++
T Consensus 111 v~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (232)
T 3i6v_A 111 AQTATIQAGYIAES---GATLVEFATPEETIAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMG 183 (232)
T ss_dssp EETTSHHHHHHHHS---SSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEE
T ss_pred EecCchHHHHHHhc---CCeEEEeCCHHHHHHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEE
Confidence 99999999999875 457888999999999999999 999999999999999887334777765 4566789999
Q ss_pred ecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCCCCCCC
Q 043276 626 FPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 665 (829)
Q Consensus 626 ~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~ 665 (829)
++|++| |++.||++|.++.++|.+++|.+||++....|..
T Consensus 184 ~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 184 LRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC-
T ss_pred EeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCccc
Confidence 999988 9999999999999999999999999986555444
No 29
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.88 E-value=4.1e-22 Score=206.55 Aligned_cols=223 Identities=19% Similarity=0.400 Sum_probs=193.8
Q ss_pred CCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
...++|+||+. +.|+||.+.. +++..|+++||++++++++|+++++ +.. .|..++.+|.+|
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~--~~~---------~~~~~~~~l~~g 81 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFKQ------GDKYVGFDLDLWAEIAKGAGWTYKI--QPM---------DFAGLIPALQTQ 81 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEEE------TTEEESHHHHHHHHHHHHHTCCEEE--EEE---------CGGGHHHHHHTT
T ss_pred ccCceEEEEeC--CCCCCeEEec------CCeEEEEhHHHHHHHHHHcCCceEE--Eec---------CHHHHHHHHHCC
Confidence 45678999987 6678888763 6789999999999999999986555 443 489999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNED 464 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 464 (829)
++|+++++++.+++|.+.++||.||...+.++++++....
T Consensus 82 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 121 (249)
T 4f3p_A 82 NIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTT---------------------------------------- 121 (249)
T ss_dssp SCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCS----------------------------------------
T ss_pred CCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCCC----------------------------------------
Confidence 9999998999999999999999999999999999865421
Q ss_pred CCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCc
Q 043276 465 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDN 544 (829)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~ 544 (829)
+++++|| .|++
T Consensus 122 -------------------------------------------------------------------i~~~~dL--~g~~ 132 (249)
T 4f3p_A 122 -------------------------------------------------------------------IKSIDDL--NGKV 132 (249)
T ss_dssp -------------------------------------------------------------------CCSSGGG--TTSE
T ss_pred -------------------------------------------------------------------cCChHHh--CCCE
Confidence 6889999 5889
Q ss_pred EEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccccCCce
Q 043276 545 VGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFKTAGFG 623 (829)
Q Consensus 545 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~ 623 (829)
||+..|+....++++. ++..+++.+++.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...+++
T Consensus 133 i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (249)
T 4f3p_A 133 IAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYG 207 (249)
T ss_dssp EEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEE
T ss_pred EEEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEE
Confidence 9999999988888774 45668889999999999999999 9999999999999988764 3577888888888999
Q ss_pred eeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCC
Q 043276 624 FAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKH 660 (829)
Q Consensus 624 ~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~ 660 (829)
++++|++|+.+.||++|.++.++|.+++|.+||++..
T Consensus 208 ~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 208 IGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred EEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999754
No 30
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=6e-22 Score=207.72 Aligned_cols=221 Identities=18% Similarity=0.319 Sum_probs=193.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.|+++||++++++++|+ +++++.. .|.+++.+|.+|++
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g~~ 81 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEE-----KDGSYIGFDIDLANAVFKLYGI--DVEWQAI---------DWDMKETELKNGTI 81 (268)
T ss_dssp HTEEEEEEC--TEETTTEEEC-----TTSCEECHHHHHHHHHHHTTTC--EEEEEEC---------CGGGHHHHHHHTSC
T ss_pred CCcEEEEEC--CCCCCceEEC-----CCCCEEEehHHHHHHHHHHhCC--cEEEEEC---------CHHHHHHHHHCCCC
Confidence 578999997 5788898865 3678999999999999999997 4555554 49999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.++||.||...+.++++++.. .
T Consensus 82 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--~----------------------------------------- 118 (268)
T 3hv1_A 82 DLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS--G----------------------------------------- 118 (268)
T ss_dssp SEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG--C-----------------------------------------
T ss_pred CEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCC--C-----------------------------------------
Confidence 999989999999999999999999999999998654 2
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
|++++|| .|++||
T Consensus 119 -----------------------------------------------------------------i~~~~dL--~g~~i~ 131 (268)
T 3hv1_A 119 -----------------------------------------------------------------IDSVAGM--AGKTLG 131 (268)
T ss_dssp -----------------------------------------------------------------CCSSGGG--TTCCEE
T ss_pred -----------------------------------------------------------------CCCHHHh--CCCEEE
Confidence 6889999 588999
Q ss_pred EEeCchHHHHHHhcC------CCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC--CceEEeCcccc
Q 043276 547 YQKGSFVLGILKQLG------FDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC--SKYTMVEPTFK 618 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c--~~l~~v~~~~~ 618 (829)
+..|+....++.+.. ++..+++.+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+.
T Consensus 132 v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (268)
T 3hv1_A 132 AQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYE 207 (268)
T ss_dssp EETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSC
T ss_pred EEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCCCC
Confidence 999999988876532 33467888999999999999999 9999999999999988764 45888888788
Q ss_pred cCCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 619 TAGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 619 ~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
..+++++++|+++ +++.||++|.++.++|.+++|.+||+..
T Consensus 208 ~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 208 GESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp CEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 8899999999998 9999999999999999999999999974
No 31
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.88 E-value=3e-22 Score=205.89 Aligned_cols=221 Identities=16% Similarity=0.251 Sum_probs=190.9
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.|+++||++++++++|++ +++++. +|..++.+|.+|++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 75 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRT-----EEGGYAGFDVDMAQRLAESLGAK--LVVVPT---------SWPNLMRDFADDRF 75 (239)
T ss_dssp HTEEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHTTCE--EEEEEC---------CTTTHHHHHHTTCC
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCCCEEeehHHHHHHHHHHHCCc--eEEEEe---------CHHHHHHHHHCCCc
Confidence 578999997 6678898865 36789999999999999999974 555553 49999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.++||.||...+.++++++.+...
T Consensus 76 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~----------------------------------------- 114 (239)
T 3kbr_A 76 DIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR----------------------------------------- 114 (239)
T ss_dssp SEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG-----------------------------------------
T ss_pred CEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc-----------------------------------------
Confidence 999889999999999999999999999999999664322
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
+++++||...++++|
T Consensus 115 -----------------------------------------------------------------i~~~~dL~~~g~~v~ 129 (239)
T 3kbr_A 115 -----------------------------------------------------------------FQTLEQIDQPGVTAI 129 (239)
T ss_dssp -----------------------------------------------------------------GSSHHHHSSTTCEEE
T ss_pred -----------------------------------------------------------------cCCHHHhcCCCcEEE
Confidence 689999965578999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeC--cccccCCcee
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVE--PTFKTAGFGF 624 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~--~~~~~~~~~~ 624 (829)
+..|+....++++. ++..++..+++.++++++|.+|+ +|+++.+...+.++++++.+ +.++. ..+...++++
T Consensus 130 ~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 203 (239)
T 3kbr_A 130 VNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGK----ADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAY 203 (239)
T ss_dssp ECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECC
T ss_pred EcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----cCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEE
Confidence 99999999988874 56678889999999999999999 99999999999999998764 55554 4467778999
Q ss_pred eecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 625 AFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 625 ~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+++| .+ +++.||++|.++.++|.+++|.++|++
T Consensus 204 ~~~k-~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 204 LLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp EECS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred EEcC-CHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 9999 55 999999999999999999999999995
No 32
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.87 E-value=8.4e-22 Score=202.98 Aligned_cols=220 Identities=20% Similarity=0.305 Sum_probs=192.4
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++|+||+. +.|+||.+.+ .++++.|+++||++++++++|+ ++++++. +|.+++.+|.+|+
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g~ 70 (242)
T 3del_B 9 NSEKFIVGTN--ATYPPFEFVD-----KRGEVVGFDIDLAREISNKLGK--TLDVREF---------SFDALILNLKQHR 70 (242)
T ss_dssp --CEEEEEEC--SCBTTTBEEC-----TTSCEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHTTS
T ss_pred cCCcEEEEeC--CCCCCeeEEC-----CCCCEEEeeHHHHHHHHHHcCC--ceEEEEc---------CHHHHHHHHhCCC
Confidence 3578999996 6788898865 3678999999999999999996 4555554 4999999999999
Q ss_pred ccEEEeccccccccceecccccccc--ccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~--~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
+|+++++++.+++|.+.++| .||+ ..+.++++++. ..
T Consensus 71 ~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~--~~-------------------------------------- 109 (242)
T 3del_B 71 IDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKG--EN-------------------------------------- 109 (242)
T ss_dssp SSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEES--CC--------------------------------------
T ss_pred cCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCC--CC--------------------------------------
Confidence 99998899999999999999 9999 88999999855 21
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
+++++|| .|+
T Consensus 110 --------------------------------------------------------------------i~~~~dL--~g~ 119 (242)
T 3del_B 110 --------------------------------------------------------------------KHPLPLT--QYR 119 (242)
T ss_dssp --------------------------------------------------------------------SCCCCGG--GSS
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 6889999 488
Q ss_pred cEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCC--
Q 043276 544 NVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAG-- 621 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~-- 621 (829)
++|+..|+....++.+ .+..+++.+++.++++++|.+|+ +|+++.+...+.+++++... +.+++..+...+
T Consensus 120 ~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 192 (242)
T 3del_B 120 SVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----SPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWV 192 (242)
T ss_dssp CEEEETTSHHHHHHHH--STTCCEEEESSHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCE
T ss_pred EEEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-eEEecCccCccccc
Confidence 9999999999999887 56678889999999999999999 99999999999999998875 778877777777
Q ss_pred --ceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCCC
Q 043276 622 --FGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHS 661 (829)
Q Consensus 622 --~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~~ 661 (829)
++++++|+++ |++.||++|.++.++|.+++|.+||+....
T Consensus 193 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~ 235 (242)
T 3del_B 193 LGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNL 235 (242)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGC
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCC
Confidence 8999999988 999999999999999999999999997543
No 33
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=2.5e-21 Score=197.92 Aligned_cols=223 Identities=22% Similarity=0.345 Sum_probs=188.5
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++|+||+. +|+||.+.+.+ .++++.|+++||++.+++++|++ ++++... .|.+++.+|.+|+
T Consensus 2 ~~~~l~v~~~---~~~P~~~~~~~---~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~--------~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 2 SAMALKVGVV---GNPPFVFYGEG---KNAAFTGISLDVWRAVAESQKWN--SEYVRQN--------SISAGITAVAEGE 65 (233)
T ss_dssp CSCCEEEEEC---CCTTTCEEC--------CEESHHHHHHHHHHHHHTCC--EEEEECS--------CHHHHHHHHHTTS
T ss_pred CCceEEEEec---CCCCeEEEecC---CCCCEEEEeHHHHHHHHHHcCCc--EEEEEeC--------CHHHHHHHHHCCC
Confidence 4578999997 37788876211 36789999999999999999975 5555542 6999999999999
Q ss_pred ccEEEeccccccccc--eeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 386 FDAVVGDTTIVFNRS--NYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 386 ~Di~~~~~~it~~R~--~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
+|+++++++.+++|. +.++||.||.....++++++....
T Consensus 66 ~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~--------------------------------------- 106 (233)
T 1ii5_A 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATP--------------------------------------- 106 (233)
T ss_dssp CSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT---------------------------------------
T ss_pred cCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCC---------------------------------------
Confidence 999998888999998 999999999999999999966431
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
.|++++|| .|+
T Consensus 107 -------------------------------------------------------------------~i~~~~dL--~g~ 117 (233)
T 1ii5_A 107 -------------------------------------------------------------------LFRSVGDL--KNK 117 (233)
T ss_dssp -------------------------------------------------------------------TCSSGGGG--TTC
T ss_pred -------------------------------------------------------------------CCCCHHHh--CCC
Confidence 17889999 488
Q ss_pred cEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccccCCc
Q 043276 544 NVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFKTAGF 622 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~ 622 (829)
++|+..|+....++++. ..+++.+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...++
T Consensus 118 ~v~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T 1ii5_A 118 EVAVVRDTTAVDWANFY---QADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPY 190 (233)
T ss_dssp EEEEETTSHHHHHHHHT---TCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEE
T ss_pred eEEEECCccHHHHHHHc---CCCeEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccce
Confidence 99999999998888875 346778899999999999999 9999999999999888763 257788777777889
Q ss_pred eeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 623 GFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 623 ~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
+++++|++|+.+.+|++|..+.++|.++++.+||+..
T Consensus 191 ~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 191 GFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred EEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999999999999999964
No 34
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.86 E-value=2.1e-21 Score=197.37 Aligned_cols=218 Identities=22% Similarity=0.359 Sum_probs=184.7
Q ss_pred ceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCccc
Q 043276 308 KKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFD 387 (829)
Q Consensus 308 ~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~D 387 (829)
++||||+. +.|+||.+.+ .++++.|+++|+++++++++|+++ ++++. +|..++.+|.+|++|
T Consensus 2 ~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~---------~~~~~~~~l~~g~~D 63 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMG-----PSGQVEGFGADIVKAVCKQMQAVC--TISNQ---------PWDSLIPSLKLGKFD 63 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC-------CCEESHHHHHHHHHHHHTTCEE--EEEEC---------CHHHHHHHHHHTSCS
T ss_pred ceEEEEEc--CCCCCeeEEC-----CCCCcccchHHHHHHHHHHhCCeE--EEEeC---------CHHHHHHHHhCCCCC
Confidence 67999997 4688898865 367899999999999999999754 45543 599999999999999
Q ss_pred EEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 043276 388 AVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRG 467 (829)
Q Consensus 388 i~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~ 467 (829)
+++++++.+++|.+.+.||.||...+.++++++....
T Consensus 64 ~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------- 100 (227)
T 3tql_A 64 ALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL------------------------------------------- 100 (227)
T ss_dssp EECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC-------------------------------------------
T ss_pred EEEecCcCCHhHHhheecccceeccceEEEEeCCCCC-------------------------------------------
Confidence 9988999999999999999999999999999865432
Q ss_pred CccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEE
Q 043276 468 PARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGY 547 (829)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~ 547 (829)
+++++|| .|+++|+
T Consensus 101 ----------------------------------------------------------------~~~~~dL--~g~~v~~ 114 (227)
T 3tql_A 101 ----------------------------------------------------------------TLSKQGL--KGKIIGV 114 (227)
T ss_dssp ----------------------------------------------------------------CCSTTTT--TTCEEEE
T ss_pred ----------------------------------------------------------------CCCHHHh--CCCEEEE
Confidence 3678899 5889999
Q ss_pred EeCchHHHHHHhcCCCc-cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCC-ceEEeCccccc-----C
Q 043276 548 QKGSFVLGILKQLGFDE-RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCS-KYTMVEPTFKT-----A 620 (829)
Q Consensus 548 ~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~-~l~~v~~~~~~-----~ 620 (829)
..|+....++++.. +. .++..+.+.++++++|.+|+ +|+++.+...+.+++++... .+.+++..+.. .
T Consensus 115 ~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3tql_A 115 QGGTTFDSYLQDSF-GNSITIQRYPSEEDALMDLTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGK 189 (227)
T ss_dssp ETTSHHHHHHHHHH-GGGSEEEEESSHHHHHHHHTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCS
T ss_pred EecccHHHHHHHhc-cccceEEEcCCHHHHHHHHHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCcccccc
Confidence 99999988887742 33 67888999999999999999 99999999999998887643 36666544333 3
Q ss_pred CceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHc
Q 043276 621 GFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 621 ~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
+++++++|++| +.+.||++|.++.++|.++++.+|||
T Consensus 190 ~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 190 GVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp CBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 56999999998 99999999999999999999999996
No 35
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.86 E-value=7.4e-21 Score=193.25 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=188.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++|+||+. +.|+||.+.+ ++++.|+++|+++.+++++|+++++. .. .|.+++.+|.+|++
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~------~g~~~G~~~dl~~~~~~~~g~~~~~~--~~---------~~~~~~~~l~~g~~ 62 (226)
T 1wdn_A 2 DKKLVVATD--TAFVPFEFKQ------GDLYVGFDVDLWAAIAKELKLDYELK--PM---------DFSGIIPALQTKNV 62 (226)
T ss_dssp --CEEEEEE--SSBTTTBEEE------TTEEESHHHHHHHHHHHHHTCCEEEE--EE---------CGGGHHHHHHTTSS
T ss_pred CceEEEEEC--CCCCCeeEec------CCcEEEeeHHHHHHHHHHhCCEEEEE--EC---------CHHHHHHHHhCCCC
Confidence 357999987 6788888865 37899999999999999999765544 43 49999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|++++++..+++|.+.++|+.||.....++++++... .
T Consensus 63 D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~-~----------------------------------------- 100 (226)
T 1wdn_A 63 DLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN-D----------------------------------------- 100 (226)
T ss_dssp SEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC-S-----------------------------------------
T ss_pred CEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC-C-----------------------------------------
Confidence 9999888889999999999999999999999986532 1
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
+++++|| .|+++|
T Consensus 101 -----------------------------------------------------------------i~~~~dL--~g~~i~ 113 (226)
T 1wdn_A 101 -----------------------------------------------------------------VKSVKDL--DGKVVA 113 (226)
T ss_dssp -----------------------------------------------------------------CSSSTTT--TTCEEE
T ss_pred -----------------------------------------------------------------CCCHHHh--CCCEEE
Confidence 6789999 488999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccccCCceee
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFKTAGFGFA 625 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~ 625 (829)
+..|+....++++. ++..++..+.+.++.+++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...+++++
T Consensus 114 ~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (226)
T 1wdn_A 114 VKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIA 188 (226)
T ss_dssp EETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEE
T ss_pred EEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEE
Confidence 99999988888775 34557788899999999999999 9999999999999888763 357777776777789999
Q ss_pred ecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCC
Q 043276 626 FPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKH 660 (829)
Q Consensus 626 ~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~ 660 (829)
++|++| +.+.+|++|..+.++|.++++.+||+...
T Consensus 189 ~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 189 FPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred EeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 999986 99999999999999999999999999643
No 36
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.85 E-value=6.9e-21 Score=194.69 Aligned_cols=221 Identities=15% Similarity=0.268 Sum_probs=191.8
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++|+||+. +.|+||.+.+ .++++.|+++||++++++++|++++++ .. .|..++.+|.+|+
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g~ 70 (234)
T 3h7m_A 9 RHRTIVVGGD--RDYPPYEFID-----QNGKPAGYNVELTRAIAEVMGMTVEFR--LG---------AWSEMFSALKSGR 70 (234)
T ss_dssp SSSCEEEEEE--TEETTTEEEC-----TTSCEESHHHHHHHHHHHHHTCCEEEE--EE---------CGGGHHHHHHTTS
T ss_pred CCCEEEEEec--CCCCCeEEEC-----CCCCEeeeEHHHHHHHHHHcCCceEEE--eC---------CHHHHHHHHhCCC
Confidence 4678999985 6788898875 367899999999999999999866554 32 5999999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|++ ++++.+++|.+.+.||.||.....++++++... .
T Consensus 71 ~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~---------------------------------------- 108 (234)
T 3h7m_A 71 VDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP-P---------------------------------------- 108 (234)
T ss_dssp SSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC-C----------------------------------------
T ss_pred eeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC-C----------------------------------------
Confidence 9995 678899999999999999999999999986543 1
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
+++++|| .|+++
T Consensus 109 ------------------------------------------------------------------~~~~~dL--~g~~i 120 (234)
T 3h7m_A 109 ------------------------------------------------------------------AAGLEDL--RGRKV 120 (234)
T ss_dssp ------------------------------------------------------------------CSSGGGG--TTSCE
T ss_pred ------------------------------------------------------------------CCCHHHh--CCCEE
Confidence 6889999 58899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC-CCceEEeCcccccCCcee
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH-CSKYTMVEPTFKTAGFGF 624 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~ 624 (829)
|+..|+....++++. .+..+++.+++.++++++|.+|+ +|+++.+...+.+++++. ...+.+++..+...++++
T Consensus 121 ~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (234)
T 3h7m_A 121 ALHRDGIMHEYLAER-GYGKDLVLTPTPADALRLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGY 195 (234)
T ss_dssp EEETTSHHHHHHHTT-TCGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEE
T ss_pred EEEeCchHHHHHHhc-CCCceEEEeCCHHHHHHHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEE
Confidence 999999999998875 34567888999999999999999 999999999999888775 335777777777888999
Q ss_pred eecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 625 AFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 625 ~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
+++|++| +++.||++|.++.++|.++++.+||++.
T Consensus 196 ~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 196 AVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 9999998 9999999999999999999999999964
No 37
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.85 E-value=5.2e-21 Score=199.60 Aligned_cols=222 Identities=18% Similarity=0.294 Sum_probs=189.8
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++|+||+. +.|+||.+.+ .++++.|+++|+++++++++|++ ++++.. +|.+++.+|.+|+
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 88 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKS-----ADGKLQGIDLELFSSYCQSRHCK--LNITEY---------AWDGMLGAVASGQ 88 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEEC-----TTCCEESHHHHHHHHHHHHHTCE--EEEEEC---------CHHHHHHHHHHTS
T ss_pred cCCeEEEEEC--CCCCCeEEEC-----CCCCEEEeHHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCCC
Confidence 4578999987 6778888865 36789999999999999999975 555553 5999999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|+++++++.+++|.+.++||.||...+..+++++.....
T Consensus 89 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~---------------------------------------- 128 (259)
T 4dz1_A 89 ADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT---------------------------------------- 128 (259)
T ss_dssp SSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCC----------------------------------------
T ss_pred CCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCC----------------------------------------
Confidence 9999989999999999999999999999999998664332
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
|++++||. |++|
T Consensus 129 ------------------------------------------------------------------i~~~~dL~--g~~v 140 (259)
T 4dz1_A 129 ------------------------------------------------------------------LNNLNELN--KYSI 140 (259)
T ss_dssp ------------------------------------------------------------------CCSGGGGG--GSCE
T ss_pred ------------------------------------------------------------------CCCHHHhC--CCEE
Confidence 78999994 8899
Q ss_pred EEEeCchHHHHHHhcCCCc------cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCccccc
Q 043276 546 GYQKGSFVLGILKQLGFDE------RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKT 619 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~ 619 (829)
|+..|+....++++. ++. .+++.+++.++++++|.+|+ +|+++.+...+.+++++....+.........
T Consensus 141 ~v~~g~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T 4dz1_A 141 GYPRGMAYSDLIKND-LEPKGYYSLSKVKLYPTYNETMADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKNV 215 (259)
T ss_dssp EEETTSTHHHHHHHH-TGGGTSCCGGGCEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEE
T ss_pred EEeCCcHHHHHHHHh-cccccccccceeEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCCC
Confidence 999999988888763 222 57888999999999999999 9999999998888877654346666666667
Q ss_pred CCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 620 AGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 620 ~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
.+++++++|+++|++.||++|.+ ..++.++++.++|..+
T Consensus 216 ~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 216 DQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred ceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 78999999999999999999999 8889999999999964
No 38
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.85 E-value=2.1e-20 Score=190.54 Aligned_cols=217 Identities=20% Similarity=0.387 Sum_probs=187.6
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++|+||+. +.|+||.+.+ .++++.|+++|+++++++++|++ ++++.. .|..++.+|.+|++
T Consensus 5 a~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 66 (229)
T 2y7i_A 5 ARTLHFGTS--ATYAPYEFVD-----ADNKIVGFDIDVANAVCKEMQAE--CSFTNQ---------SFDSLIPSLRFKKF 66 (229)
T ss_dssp CCEEEEEEC--CCBTTTBEEC-----TTSCEESHHHHHHHHHHHHTTCE--EEEEEC---------CGGGHHHHHHTTSC
T ss_pred CCcEEEEeC--CCcCCceEEC-----CCCCCcceeHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCCCc
Confidence 578999986 6788888765 36789999999999999999975 455553 59999999999999
Q ss_pred cEEEeccccccccceecccccccccc-ceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTES-GVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~-~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
|++++++..+++|.+.+.|+.||... ..++++++..
T Consensus 67 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------- 103 (229)
T 2y7i_A 67 DAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------- 103 (229)
T ss_dssp SEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-------------------------------------------
T ss_pred eEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-------------------------------------------
Confidence 99988889999999999999999999 9999998553
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
+++++|| .|+++
T Consensus 104 ------------------------------------------------------------------~~~~~dL--~g~~v 115 (229)
T 2y7i_A 104 ------------------------------------------------------------------YHTFADL--KGKKV 115 (229)
T ss_dssp ------------------------------------------------------------------CCSTGGG--TTCEE
T ss_pred ------------------------------------------------------------------CCCHHHH--CCCEE
Confidence 3678999 58899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccc-----cC
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFK-----TA 620 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~-----~~ 620 (829)
|+..|+....++++. ++..++..+.+.++++++|.+|+ +|+++.+...+.+++++.. .+.+++..+. ..
T Consensus 116 ~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (229)
T 2y7i_A 116 GLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGK 189 (229)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCC
T ss_pred EEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cCEEEechHHHHHHHHhCC-CeEEecccccccccccc
Confidence 999999988888764 44567888899999999999999 9999999999999988877 5888776543 24
Q ss_pred CceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 621 GFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 621 ~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+++++++|++| +.+.||++|.++.++|.++++.+||++
T Consensus 190 ~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 190 GLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 78999999988 999999999999999999999999985
No 39
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.85 E-value=6.2e-21 Score=200.02 Aligned_cols=220 Identities=17% Similarity=0.271 Sum_probs=187.9
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.|+++||++++++++|++ +++++.. +|.+++.+|.+|++
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~--------~~~~~~~~l~~G~~ 93 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFR-----TDEQFGGISAAVLQLLQLRTGLD--FEIIGVD--------TVEELIAKLRSGEA 93 (267)
T ss_dssp CSEEEEEEE--TEETTTEECC-----TTCCCBSHHHHHHHHHHHHHCCE--EEEEEES--------SHHHHHHHHHHTSC
T ss_pred CCcEEEEeC--CCCCCeEEEC-----CCCcEeeeHHHHHHHHHHHHCCe--EEEEecC--------CHHHHHHHHHCCCc
Confidence 578999996 6688998865 36789999999999999999975 5555543 69999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|++. +++.+++|.+.+.||.||...+.++++++....
T Consensus 94 D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~------------------------------------------ 130 (267)
T 3mpk_A 94 DMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDA------------------------------------------ 130 (267)
T ss_dssp SEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTS------------------------------------------
T ss_pred cEEe-cccCChhhhcceEechhhccCceEEEEECCCCC------------------------------------------
Confidence 9975 899999999999999999999999999865322
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
+++++|| .|+++|
T Consensus 131 -----------------------------------------------------------------i~~~~dL--~g~~i~ 143 (267)
T 3mpk_A 131 -----------------------------------------------------------------PVDADHL--DGRTVA 143 (267)
T ss_dssp -----------------------------------------------------------------CSSGGGC--TTCEEE
T ss_pred -----------------------------------------------------------------CCCHHHH--CCCEEE
Confidence 6889999 488999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC-CCceEEeCccc-ccCCcee
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH-CSKYTMVEPTF-KTAGFGF 624 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~-~~~~~~~ 624 (829)
+..|+....++++. ++..+++.+++.++++++|.+|+ +|+++.+...+.+++++. ...+.+++... ...+++|
T Consensus 144 v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (267)
T 3mpk_A 144 LVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIAL 218 (267)
T ss_dssp EETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEE
T ss_pred EeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEE
Confidence 99999999988864 55678889999999999999999 999999999999988874 33477765532 4678899
Q ss_pred eecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 625 AFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 625 ~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
+++|++| |.+.||++|..+.++| +++|.+||++.
T Consensus 219 ~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 219 ATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred EEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 9999998 9999999999999996 99999999964
No 40
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.84 E-value=1.2e-20 Score=194.74 Aligned_cols=222 Identities=13% Similarity=0.186 Sum_probs=185.3
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCC-CcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELP-YAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~-f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
..++|+||+. +.|+||.+. .++++.|+++||++++++++| ++ ++++.. +|.+++.+|.+|
T Consensus 6 ~~~~l~v~~~--~~~~P~~~~------~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~---------~~~~~~~~l~~g 66 (246)
T 4eq9_A 6 SKKEIIVATN--GSPRPFIYE------ENGELTGYEIEVVRAIFKDSDKYD--VKFEKT---------EWSGVFAGLDAD 66 (246)
T ss_dssp -CEEEEEEEC--CCSTTTSEE------ETTEEESHHHHHHHHHHTTCSSEE--EEEEEC---------CHHHHHHHHHTT
T ss_pred CCCEEEEEeC--CCcCCeEEc------CCCCCcccHHHHHHHHHHHcCCce--EEEEeC---------CHHHHHHHHhCC
Confidence 3578999987 567788873 267899999999999999999 74 555553 499999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNED 464 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~ 464 (829)
++|+++++++.+++|.+.++||.||...+.++++++.+..
T Consensus 67 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 106 (246)
T 4eq9_A 67 RYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSS---------------------------------------- 106 (246)
T ss_dssp SCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCS----------------------------------------
T ss_pred CcCEEecccccChhhhhceeeccceecCceEEEEECCCCC----------------------------------------
Confidence 9999998899999999999999999999999999963321
Q ss_pred CCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCc
Q 043276 465 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDN 544 (829)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~ 544 (829)
|++++|| .|++
T Consensus 107 -------------------------------------------------------------------i~~~~dL--~g~~ 117 (246)
T 4eq9_A 107 -------------------------------------------------------------------IKSLDDI--GGKS 117 (246)
T ss_dssp -------------------------------------------------------------------CSSGGGC--TTCE
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 6889999 4889
Q ss_pred EEEEeCchHHHHHHhc--CCCc--ccee-ecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccc
Q 043276 545 VGYQKGSFVLGILKQL--GFDE--RKLV-VYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFK 618 (829)
Q Consensus 545 vg~~~~s~~~~~l~~~--~~~~--~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~ 618 (829)
+|+..|+....++.+. ..+. ..+. ...+.++++++|.+|+ +|+++.+...+.+++++.. ..+.++.....
T Consensus 118 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 4eq9_A 118 TEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPSD 193 (246)
T ss_dssp EEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCCS
T ss_pred EEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcCC
Confidence 9999999888887651 1332 2333 2248899999999999 9999999999999888764 34777777666
Q ss_pred cCC-ceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 619 TAG-FGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 619 ~~~-~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
..+ ++++++|++| +++.||++|.++.++|.+++|.++|++.
T Consensus 194 ~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 194 QQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp SCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 665 8999999998 9999999999999999999999999964
No 41
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.84 E-value=1.9e-20 Score=192.28 Aligned_cols=222 Identities=17% Similarity=0.285 Sum_probs=183.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.|+++||++++++++|++ ++++.. +|.+++.+|.+|++
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 64 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKD-----AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS---------DFDALIPSLKAKKI 64 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEEC-----TTCCEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHTTSC
T ss_pred cceEEEEEC--CCcCCeeEEC-----CCCCEeeEHHHHHHHHHHHHCCe--EEEEeC---------CHHHHHHHHhCCCC
Confidence 568999985 5788888865 36789999999999999999975 455543 59999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.++||.||.....++++++....
T Consensus 65 D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------ 102 (239)
T 1lst_A 65 DAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI------------------------------------------ 102 (239)
T ss_dssp SEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC------------------------------------------
T ss_pred CEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC------------------------------------------
Confidence 99998899999999999999999999999999965421
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
..+++|| .|+++|
T Consensus 103 -----------------------------------------------------------------~~~~~dL--~g~~v~ 115 (239)
T 1lst_A 103 -----------------------------------------------------------------QPTLESL--KGKHVG 115 (239)
T ss_dssp -----------------------------------------------------------------CSSHHHH--TTCEEE
T ss_pred -----------------------------------------------------------------CCCHHHh--CCCEEE
Confidence 1479999 588999
Q ss_pred EEeCchHHHHHHhcCC-CccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHH-HHhcC-CCceEEeCccccc----
Q 043276 547 YQKGSFVLGILKQLGF-DERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKL-LIGQH-CSKYTMVEPTFKT---- 619 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~-~~~~~-c~~l~~v~~~~~~---- 619 (829)
+..|+....++++... +..++..+++.++.+++|.+|+ +|+++.+...+.+ ++.+. ...+.+++..+..
T Consensus 116 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (239)
T 1lst_A 116 VLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYF 191 (239)
T ss_dssp EETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHH
T ss_pred EEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEecccccccccc
Confidence 9999998888876421 2346778899999999999999 9999999888754 44443 2247777665543
Q ss_pred -CCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 620 -AGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 620 -~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
.+++++++|++| |.+.||++|..+.++|.+++|.+||+..
T Consensus 192 ~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 192 GDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp CSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 378999999998 9999999999999999999999999964
No 42
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.84 E-value=1.4e-20 Score=197.68 Aligned_cols=222 Identities=16% Similarity=0.250 Sum_probs=183.9
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++|+||+. +.|+||.+.+.+ ++.+++.|+++||++++++++|++ ++++.. .|.+++.+|.+|+
T Consensus 19 ~~~~l~v~~~--~~~pP~~~~~~~--~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~---------~~~~~~~~l~~G~ 83 (271)
T 2iee_A 19 DKGKIVVATS--GTLYPTSYHDTD--SGSDKLTGYEVEVVREAAKRLGLK--VEFKEM---------GIDGMLTAVNSGQ 83 (271)
T ss_dssp HHTEEEEEEC--SCBTTTBEEETT--TTCCEEECHHHHHHHHHHHHTTCE--EEEEEC---------CSTTHHHHHHHTS
T ss_pred cCCeEEEEEC--CCCCCeeEeCCC--CCCCCceeeHHHHHHHHHHHcCCe--EEEEEC---------CHHHHHHHHHCCC
Confidence 3578999987 678888886521 122789999999999999999975 455553 4899999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|+++++++.+++|.+.++||.||...+.++++++.....
T Consensus 84 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~---------------------------------------- 123 (271)
T 2iee_A 84 VDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG---------------------------------------- 123 (271)
T ss_dssp SSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGG----------------------------------------
T ss_pred cCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCC----------------------------------------
Confidence 9999988889999999999999999999999998654211
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
|++++|| .|++|
T Consensus 124 ------------------------------------------------------------------i~~~~dL--~g~~i 135 (271)
T 2iee_A 124 ------------------------------------------------------------------IKTLKDL--KGKKA 135 (271)
T ss_dssp ------------------------------------------------------------------CSSGGGG--TTCEE
T ss_pred ------------------------------------------------------------------CCCHHHh--CCCEE
Confidence 6889999 58899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHH--HHHHhcCCcCCceeEEEcchhHHHHHHh-cCC-CceEEe-CcccccC
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEEC--DELFQKGSANGGIAAAFDEIPYAKLLIG-QHC-SKYTMV-EPTFKTA 620 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~g~~a~~~~~~~~~~~~~-~~c-~~l~~v-~~~~~~~ 620 (829)
|+..|+....++++.+. +++.+++.++. +++|.+|+ +| ++.+...+.+++. +.. ..+.++ +..+...
T Consensus 136 ~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (271)
T 2iee_A 136 AGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPN 207 (271)
T ss_dssp ESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEE
T ss_pred EEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCcccc
Confidence 99999998888887543 77888888888 99999999 99 5555555555554 432 357777 6677778
Q ss_pred CceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 621 GFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 621 ~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+++++++|++| |++.||++|..+.++|.+++|.+||+.
T Consensus 208 ~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 208 KQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp EECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 89999999988 999999999999999999999999997
No 43
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.84 E-value=2.7e-20 Score=193.57 Aligned_cols=223 Identities=14% Similarity=0.166 Sum_probs=187.8
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++|+||+. +|+||.+.+ .++++.|+++||++++++++|++ .++++.. .|.+++.+|.+|++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~---------~~~~~~~~l~~g~~ 73 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVG-----ADGKVSGAAPDVAREIFKRLGVA-DVVASIS---------EYGAMIPGLQAGRH 73 (257)
T ss_dssp HTEEEEEEC---CCTTTCEEC-----TTCCEESHHHHHHHHHHHHTTCC-EEEEEEC---------CGGGHHHHHHTTSC
T ss_pred CCeEEEEcC---CCCCeeEEC-----CCCCcccccHHHHHHHHHHcCCC-eeeEEeC---------CHHHHHHHHHCCCc
Confidence 467999986 577888764 36789999999999999999985 2555553 49999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.++||.||...+.++++++.....
T Consensus 74 D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~----------------------------------------- 112 (257)
T 2q88_A 74 DAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG----------------------------------------- 112 (257)
T ss_dssp SEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC-----------------------------------------
T ss_pred CEEEecccCCHHHHhccccccchhcCceEEEEECCCccC-----------------------------------------
Confidence 999888999999999999999999999999998664321
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhC-CCcE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKR-GDNV 545 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~-~~~v 545 (829)
+++++||..+ |+++
T Consensus 113 -----------------------------------------------------------------i~~~~dL~~~~g~~i 127 (257)
T 2q88_A 113 -----------------------------------------------------------------LKSYKDIADNPDAKI 127 (257)
T ss_dssp -----------------------------------------------------------------CCBHHHHHHCTTCCE
T ss_pred -----------------------------------------------------------------CCCHHHHhccCCceE
Confidence 6899999644 7899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccc--cCCc
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFK--TAGF 622 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~--~~~~ 622 (829)
|+..|+....++++.+++..++..+++.++++++|.+|+ +|+++.+...+.+++++.. ..+..+.+... ..++
T Consensus 128 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
T 2q88_A 128 GAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCD 203 (257)
T ss_dssp EECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEB
T ss_pred EEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccce
Confidence 999999999999887777778889999999999999999 9999999999999888754 34555443211 2467
Q ss_pred eeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHc
Q 043276 623 GFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 623 ~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
+++++|+++ +.+.||++|.++.++|.++++.++|.
T Consensus 204 ~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 204 GAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp CCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 889999977 99999999999999999999999994
No 44
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.83 E-value=1.5e-19 Score=198.73 Aligned_cols=228 Identities=18% Similarity=0.226 Sum_probs=189.9
Q ss_pred CCCChHHHHHHHHHHH-HHcCCcEEEEEEE-eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC
Q 043276 1 GALNDSSQVGAITAII-KAFGWREAVPIYV-DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll-~~fgW~~V~iI~~-dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ 78 (829)
+.|+|..++.++++++ +++||++|++||. +++||....+.+.+++++.|++|.... ++.+ ..++...+.++++.+
T Consensus 128 ~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~ 204 (366)
T 3td9_A 128 VCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFN 204 (366)
T ss_dssp SSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTC
T ss_pred EeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcC
Confidence 4688999999999998 6789999999986 789999999999999999999998887 7665 346778899999999
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCC---ChhHHHHHHHHH
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPK---TKALENFRVRWK 155 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~~~~~~F~~~w~ 155 (829)
+++|++.++...+..+++++++.|+. ..|+.+++|.... .. ......++|++....+.+. .+..++|.+.|+
T Consensus 205 ~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~ 279 (366)
T 3td9_A 205 PDAIYITGYYPEIALISRQARQLGFT---GYILAGDGADAPE-LI-EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYK 279 (366)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHTTCC---SEEEECGGGCSTH-HH-HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHH
T ss_pred CCEEEEccchhHHHHHHHHHHHcCCC---ceEEeeCCcCCHH-HH-HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999974 3578877765321 11 1233467888887765544 678999999999
Q ss_pred HhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccc-eecc
Q 043276 156 RKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIR-FRGL 234 (829)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~-f~G~ 234 (829)
++++. .++.++..+|||+++++.|+++++.. ++..+.++|++++ |.|+
T Consensus 280 ~~~g~--------~p~~~~~~~yda~~~~~~al~~ag~~-----------------------~~~~~~~~l~~~~~~~g~ 328 (366)
T 3td9_A 280 EKYGK--------EPAALNALGYDAYMVLLDAIERAGSF-----------------------DREKIAEEIRKTRNFNGA 328 (366)
T ss_dssp HHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC-----------------------CHHHHHHHHTTCCSEEET
T ss_pred HHHCC--------CCchhHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHHhCCCCccc
Confidence 98876 36789999999999999999998532 2688999999998 9999
Q ss_pred cccEEEe-cCccccceEEEEEcc-CCcEEEEEecCC
Q 043276 235 TGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWSPE 268 (829)
Q Consensus 235 tG~~~F~-~G~~~~~~y~I~n~~-~g~~~VG~w~~~ 268 (829)
+|.+.|+ +|++. ..+.|++++ +.++.||.|++.
T Consensus 329 ~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 329 SGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp TEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred ceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 9999997 99986 569999998 559999999874
No 45
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.82 E-value=4.8e-20 Score=187.48 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=182.1
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++|+||+. +++||.+. .++++.|+++|+++.+++++|+++ +++... +|.+++.+|.+|++
T Consensus 2 ~~~l~v~~~---~~~P~~~~------~~g~~~G~~~dl~~~~~~~~g~~~--~~~~~~--------~~~~~~~~l~~g~~ 62 (228)
T 2pyy_A 2 QQPLLVATR---VIPPFVLS------NKGELSGFSIDLWRSIATQIGIES--KLIEYS--------SVPELISAIKDNKV 62 (228)
T ss_dssp --CEEEEEC---CBTTTBBC------C---CBSHHHHHHHHHHHHHTCCE--EEEECS--------SHHHHHHHHHTTSC
T ss_pred CceEEEEec---CCCCeEEe------cCCceEEEeHHHHHHHHHHhCCcE--EEEEcC--------CHHHHHHHHHCCCc
Confidence 367999987 36777764 256799999999999999999754 555542 68999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.+.|+.||...+.++++++.....
T Consensus 63 D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~----------------------------------------- 101 (228)
T 2pyy_A 63 NLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGT----------------------------------------- 101 (228)
T ss_dssp SEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC----------------------------------------------
T ss_pred CEEEeccccCHHHHccceecccchhcceEEEEECCcccc-----------------------------------------
Confidence 999888889999999999999999999999998654210
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
..+++++|| .|+++|
T Consensus 102 ---------------------------------------------------------------~~~~~~~dL--~g~~i~ 116 (228)
T 2pyy_A 102 ---------------------------------------------------------------GDIRSIDDL--PGKVVA 116 (228)
T ss_dssp ---------------------------------------------------------------CCCCSGGGC--TTCEEE
T ss_pred ---------------------------------------------------------------CCcCCHHHc--CCCeEE
Confidence 127889999 588999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeCcccccCCceee
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVEPTFKTAGFGFA 625 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~ 625 (829)
+..|+....++++.+. ++..+.+.++.+++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...+++++
T Consensus 117 ~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
T 2pyy_A 117 TTAGSTAATYLREHHI---SVLEVPKIEEAYKALQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGII 189 (228)
T ss_dssp EETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCE
T ss_pred EEcCcHHHHHHHHcCC---ceEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEE
Confidence 9999998888887543 5778889999999999999 9999999999988887753 247777766777788999
Q ss_pred ecCCCCchhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 626 FPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 626 ~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
++|++++.+.+|++|..+.++|.++++.+||+..
T Consensus 190 ~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 190 LPNNSPYRKPINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp ECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999999999999964
No 46
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.82 E-value=2.1e-19 Score=201.39 Aligned_cols=215 Identities=16% Similarity=0.107 Sum_probs=173.9
Q ss_pred CCCChHHHHHHHHHHHHHc--------CCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHH
Q 043276 1 GALNDSSQVGAITAIIKAF--------GWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELY 72 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~f--------gW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~ 72 (829)
+.|++..|+.+++++++++ ||++|++||+|++||+...+.|.+.+++.|++|+..+.++.+ ..++..++.
T Consensus 136 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~ 213 (419)
T 3h5l_A 136 YDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP--VSDWGPTLA 213 (419)
T ss_dssp SSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--CSCCHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC--CccHHHHHH
Confidence 5789999999999999887 999999999999999999999999999999999998888765 347889999
Q ss_pred HhhcCCCeEEEEEcC-hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEec-cCCChhHHHH
Q 043276 73 KLFTMQTRVFILHML-PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPY-VPKTKALENF 150 (829)
Q Consensus 73 ~lk~~~arViIv~~~-~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~F 150 (829)
+|+++++++|++++. ++.+..+++++++.|+ ...|+.+++|.... .. ......++|++..... .+..+..++|
T Consensus 214 ~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~-~~-~~~g~~~~G~~~~~~~~~~~~~~~~~f 288 (419)
T 3h5l_A 214 KLRADPPAVIVVTHFYPQDQALFMNQFMTDPT---NSLVYLQYGASLAA-FR-DIAGDNSVGVTYATVLGTLQDEMGDAF 288 (419)
T ss_dssp HHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC---SCEEEECSGGGSHH-HH-HHHGGGGTTCEEEESSCCCSSHHHHHH
T ss_pred HHHhcCCCEEEEccccCchHHHHHHHHHHcCC---CceEEecCCCCcHH-HH-HhhhhhcCceEEeecCCCCCCHHHHHH
Confidence 999999999999876 5789999999999997 56788888875321 11 1223457787765443 3467889999
Q ss_pred HHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccc
Q 043276 151 RVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIR 230 (829)
Q Consensus 151 ~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~ 230 (829)
.++|+++|+.. ..+.++..+|||+++++.|+++++.+... +...++..+.++|++++
T Consensus 289 ~~~~~~~~g~~-------p~~~~a~~~Yda~~~~~~a~~~a~~~~~~----------------g~~~~~~~l~~al~~~~ 345 (419)
T 3h5l_A 289 AKAYKERYGDL-------SSTASGCQTYSALYAYSIAAALAGGPGAP----------------YDDVQNKAVADRLRSLI 345 (419)
T ss_dssp HHHHHHHHCTT-------SCHHHHHHHHHHHHHHHHHHHHTTSCCCT----------------TCHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhCCC-------CCcchhHHHHHHHHHHHHHHHHhcCCccC----------------CCccCHHHHHHHHHhCC
Confidence 99999998763 12358999999999999999988643210 00123678999999999
Q ss_pred eecccccEEEe-cCcc
Q 043276 231 FRGLTGDYIFV-DGQL 245 (829)
Q Consensus 231 f~G~tG~~~F~-~G~~ 245 (829)
|.|++|.+.|+ +|+.
T Consensus 346 ~~g~~G~i~f~~~g~~ 361 (419)
T 3h5l_A 346 FRGPVGTMRFHADTQS 361 (419)
T ss_dssp EEETTEEEEBCTTTCB
T ss_pred cccCceEEEECCCCCc
Confidence 99999999997 8884
No 47
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.82 E-value=2.2e-19 Score=188.63 Aligned_cols=241 Identities=21% Similarity=0.330 Sum_probs=188.1
Q ss_pred ccceecCCCCCCCCCCc---ccCCCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEE
Q 043276 285 LRPIIWPGDSTSDPKGW---EIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFV 361 (829)
Q Consensus 285 ~~~i~Wpg~~~~~P~~~---~~p~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~ 361 (829)
+..+.|.++....+... ......++|+||+. +.|+||.+.+ ++++.|+++||++++++++|+++ +++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v~~~--~~~~P~~~~~------~g~~~G~~~dl~~~i~~~~g~~v--~~~ 85 (272)
T 2pvu_A 16 PRGSHMGGGRSTETSSSSGGDGGATKKKVVVGTD--AAFAPFEYMQ------KGKIVGFDVDLLDAVMKAAGLDY--ELK 85 (272)
T ss_dssp ----------------------CCCCCCEEEEEC--CCBTTTBEEE------TTEEESHHHHHHHHHHHHHTCCE--EEE
T ss_pred cccceecCCCCCccccCccccccccCCeEEEEEC--CCCCCeEEec------CCeEEEEHHHHHHHHHHHhCCce--EEE
Confidence 34566765532221111 12244678999997 5788888763 57899999999999999999754 555
Q ss_pred ecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHH
Q 043276 362 PYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWV 441 (829)
Q Consensus 362 ~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~ 441 (829)
.. .|.+++.+|.+|++|+++++++.+++|.+.++|+.||.....++++++...
T Consensus 86 ~~---------~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------ 138 (272)
T 2pvu_A 86 NI---------GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP------------------ 138 (272)
T ss_dssp EC---------CHHHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC------------------
T ss_pred EC---------CHHHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC------------------
Confidence 43 499999999999999998888899999999999999999999999985431
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 043276 442 TSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTS 521 (829)
Q Consensus 442 ~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s 521 (829)
T Consensus 139 -------------------------------------------------------------------------------- 138 (272)
T 2pvu_A 139 -------------------------------------------------------------------------------- 138 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccCCCCCCCHHHHHhCCCcEEEEeCchHHHHHHhc-CCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 522 LLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQL-GFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 522 ~Lt~~~~~~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
|++++|| .|+++|+..|+....++++. + ...+++.+.+.++.+++|.+|+ +|+++.+...+.
T Consensus 139 ----------i~~~~dL--~g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~ 201 (272)
T 2pvu_A 139 ----------VKNALDL--KGKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDAVITDNAVAN 201 (272)
T ss_dssp ----------CCSGGGG--TTSCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSEEEEEHHHHH
T ss_pred ----------CCCHHHh--CCCeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccEEEeCHHHHH
Confidence 5889999 58899999999888888764 3 3557788899999999999999 999999999999
Q ss_pred HHHhcCCC-ceEEeCccc--ccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 601 LLIGQHCS-KYTMVEPTF--KTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 601 ~~~~~~c~-~l~~v~~~~--~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
+++++... .+.+++... ...+++++++|+..+.+.||++|..+.++|.++++.+||+..
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 202 EYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp HHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 88877632 377777653 566789999999449999999999999999999999999964
No 48
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=1.2e-19 Score=189.83 Aligned_cols=224 Identities=25% Similarity=0.360 Sum_probs=189.1
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++++||+. +.|+||.+.+. ..+++++.|+++|+++.+++++|++ ++++.. +|..++.++.+|++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~--~~~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 102 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKV--VDGKNQIVGSDIELAKAIATELGVE--LELSPM---------SFDNVLASVQSGKA 102 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEE--ETTEEEEESHHHHHHHHHHHHHTCE--EEEEEC---------CHHHHHHHHHTTSC
T ss_pred CCeEEEEec--CCCCCceeecc--cCCCCcEeeecHHHHHHHHHHHCCc--eEEEEc---------CHHHHHHHHhCCCc
Confidence 458999987 66788887210 0147899999999999999999975 455553 59999999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++++++.+++|.+.+.|+.||......+++++....
T Consensus 103 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------ 140 (269)
T 4i62_A 103 DLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA------------------------------------------ 140 (269)
T ss_dssp SEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT------------------------------------------
T ss_pred cEEecCCcCCHhHhhceecccchhhcceEEEEECCccc------------------------------------------
Confidence 99998899999999999999999999999999966422
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
.|++++|| .|+++|
T Consensus 141 ----------------------------------------------------------------~i~~~~dL--~g~~i~ 154 (269)
T 4i62_A 141 ----------------------------------------------------------------TYQSVNDL--AQKKVG 154 (269)
T ss_dssp ----------------------------------------------------------------TCSSGGGG--C-CEEE
T ss_pred ----------------------------------------------------------------cccCHHHh--CCCeEE
Confidence 27899999 588999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccc---cCCce
Q 043276 547 YQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFK---TAGFG 623 (829)
Q Consensus 547 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~---~~~~~ 623 (829)
+..|+....++++. ++..++..+++.++.+++|.+|+ +|+++.+.+.+.++++++.. +.+....+. ..+++
T Consensus 155 ~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (269)
T 4i62_A 155 AQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQ----VDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYA 228 (269)
T ss_dssp EETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEEC
T ss_pred EecCchHHHHHHHh-CCCCcEEecCCHHHHHHHHHcCC----CCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceE
Confidence 99999988888774 45667889999999999999999 99999999999998888764 555544433 66889
Q ss_pred eeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 624 FAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 624 ~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
++++|++| +.+.||++|.++.++|.++++.++|++.
T Consensus 229 ~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 229 VAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 99999998 9999999999999999999999999964
No 49
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.82 E-value=3.5e-19 Score=197.35 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=186.5
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhC--CceeeeEEecCCCCChhHHHHHHHHhhcCC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAI--DTRVPYRSVISPLATDDQIEKELYKLFTMQ 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~--gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ 78 (829)
+.|++..|+.++++++.++||++|++||.|++||+...+.|.+++++. |++|+....++.+. .++...+.++++++
T Consensus 122 ~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~ 199 (387)
T 3i45_A 122 LRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAE 199 (387)
T ss_dssp CSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTC
T ss_pred eCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCC
Confidence 468999999999999999999999999999999999999999999998 89998887776553 37889999999999
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEe-c-cCCChhHHHHHHHHHH
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRP-Y-VPKTKALENFRVRWKR 156 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~-~-~~~~~~~~~F~~~w~~ 156 (829)
+++|++++....+..+++++++.||.. .+||.+..+... ........+.++|++.... . ....+..++|.++|++
T Consensus 200 ~d~v~~~~~~~~~~~~~~~~~~~g~~~--~~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~ 276 (387)
T 3i45_A 200 PEGLFNVLFGADLPKFVREGRVRGLFA--GRQVVSMLTGEP-EYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRA 276 (387)
T ss_dssp CSEEEECCCTTHHHHHHHHHHHHTSST--TCEEEEEEEESH-HHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHH
T ss_pred CCEEEEcCccHHHHHHHHHHHHcCCCC--CCeEEeecCCCh-HHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999843 355554433211 1111111234678776532 2 2578899999999999
Q ss_pred hhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccc
Q 043276 157 KFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTG 236 (829)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG 236 (829)
+++. .++.++..+|||+++++.|+++++.. ++..|.++|++++|+|++|
T Consensus 277 ~~~~--------~p~~~~~~~Yda~~~~a~Al~~ag~~-----------------------~~~~v~~al~~~~~~g~~G 325 (387)
T 3i45_A 277 RWKE--------DPFVGSLVGYNTLTAMAVAFEKAGGT-----------------------ESETLVETLKDMAFSTPMG 325 (387)
T ss_dssp HHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC-----------------------CHHHHHHHTTTCEEEETTE
T ss_pred HHCC--------CCCcHHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHhcCCCcCCCC
Confidence 8865 35678999999999999999998521 2688999999999999999
Q ss_pred cEEEe--cCccccceEEEEEcc--CCcEEEEEecCCCCc
Q 043276 237 DYIFV--DGQLQSSAFEIINVN--NGARGVGFWSPEKGL 271 (829)
Q Consensus 237 ~~~F~--~G~~~~~~y~I~n~~--~g~~~VG~w~~~~g~ 271 (829)
.+.|+ +++. .....|..+. +|...++.|....+.
T Consensus 326 ~i~f~~~~~~~-~~~~~i~~~~~~~g~~~i~~w~~~~~~ 363 (387)
T 3i45_A 326 PLSFRASDHQS-TMGAWVGRTALRDGKGVMVDWRYVDGG 363 (387)
T ss_dssp EEEBCTTTCBB-CCCEEEEEEEEETTEEEEEEEEEECGG
T ss_pred CeEEcCCCCcc-ccceeEEEEEeeCCceeEEeeEEeCch
Confidence 99995 5555 3566677776 678999999865553
No 50
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.81 E-value=3.4e-19 Score=186.22 Aligned_cols=219 Identities=18% Similarity=0.272 Sum_probs=189.9
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++++||+. +.++||.+.+ .++++.|+++|+++.+++++|++ ++++.. +|.+++.++.+|+
T Consensus 29 ~~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 90 (268)
T 3qax_A 29 RNRIWIVGTN--ATYPPFEYVD-----AQGEVVGFDIDLAKAISEKLGKQ--LEVREF---------AFDALILNLKKHR 90 (268)
T ss_dssp --CEEEEEEC--SCBTTTBEEC-----TTSCEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHHTS
T ss_pred cCCeEEEEEC--CCCCCceEEC-----CCCCEEEEEHHHHHHHHHHhCCe--EEEEec---------CHHHHHHHHhCCC
Confidence 3568999987 5677888765 36789999999999999999974 555553 4899999999999
Q ss_pred ccEEEeccccccccceecccccccc--ccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~--~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
+|+++++++.+++|.+.++| .||. ..+..+++++... .
T Consensus 91 ~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~-~-------------------------------------- 130 (268)
T 3qax_A 91 IDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSL-E-------------------------------------- 130 (268)
T ss_dssp SSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTS-C--------------------------------------
T ss_pred ccEEeecCccCHhHhcceee-ecceecccceEEEEECCCC-C--------------------------------------
Confidence 99998889999999999999 9999 8899999986532 1
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
|++++||. |+
T Consensus 131 --------------------------------------------------------------------i~~~~dL~--g~ 140 (268)
T 3qax_A 131 --------------------------------------------------------------------TPVLPLTQ--YS 140 (268)
T ss_dssp --------------------------------------------------------------------SCCCCGGG--SS
T ss_pred --------------------------------------------------------------------CCCHHHhC--CC
Confidence 68899994 88
Q ss_pred cEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCC--
Q 043276 544 NVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAG-- 621 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~-- 621 (829)
++|+..|+....++.+ .+..+++.+++.++.+++|.+|+ +|+++.+...+.++++++.. +.+++..+...+
T Consensus 141 ~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 213 (268)
T 3qax_A 141 SVAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIMEVRYGK----SPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWV 213 (268)
T ss_dssp CEEEETTSHHHHHHHT--STTCCEEEESCHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCB
T ss_pred EEEEecCcHHHHHHHh--CCCceEEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-cEEecCccCccccc
Confidence 9999999999888887 55667888999999999999999 99999999999999988775 777777776667
Q ss_pred --ceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 622 --FGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 622 --~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
++++++|++| +++.+|++|.++.++|.++++.++|+..
T Consensus 214 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 214 LGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred ccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 8999999998 9999999999999999999999999964
No 51
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.81 E-value=1.2e-18 Score=192.02 Aligned_cols=229 Identities=14% Similarity=0.169 Sum_probs=187.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.++++|....+.+.+++++.|+++.....++.+. .++...+.++++.+++
T Consensus 131 ~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d 208 (375)
T 4evq_A 131 TSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPD--VEFQSALAEIASLKPD 208 (375)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCS
T ss_pred eeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCC--ccHHHHHHHHHhcCCC
Confidence 36789999999999999999999999999999999999999999999999998777776553 3677888888888999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~~ 158 (829)
+|+++++...+..+++++++.|+. ..|+.+ +|.. .... ......++|++...++.+ ..+..++|.+.|++++
T Consensus 209 ai~~~~~~~~a~~~~~~~~~~g~~---vp~~~~-~~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 282 (375)
T 4evq_A 209 CVYAFFSGGGALKFIKDYAAANLG---IPLWGP-GFLT-DGVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY 282 (375)
T ss_dssp EEEEECCTHHHHHHHHHHHHTTCC---CCEEEE-GGGT-TTTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH
T ss_pred EEEEecCcchHHHHHHHHHHcCCC---ceEEec-CcCC-HHHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999974 224444 4522 1111 123356789888876654 4588999999999988
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+. .++.++..+|||++++++|+++++.. +.++..|.++|++++|+|++|.+
T Consensus 283 ~~--------~p~~~~~~~yda~~~~~~al~~~g~~---------------------~~~~~~l~~~l~~~~~~g~~G~i 333 (375)
T 4evq_A 283 KI--------PPDVFAVQGWDAGQLLDAGVKAVGGD---------------------VAKRKELNAAMAAASFASPRGPF 333 (375)
T ss_dssp SS--------CCCHHHHHHHHHHHHHHHHHHHTTTC---------------------TTCHHHHHHHHHTCEEEETTEEE
T ss_pred CC--------CCcHHHHHHHHHHHHHHHHHHHhCCC---------------------CCCHHHHHHHHhcCCcccCCcce
Confidence 76 36778999999999999999997531 01378899999999999999999
Q ss_pred EEe-cCccccceEEEEEcc-CCcEEEEEecC
Q 043276 239 IFV-DGQLQSSAFEIINVN-NGARGVGFWSP 267 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~-~g~~~VG~w~~ 267 (829)
.|+ +|++. ..+.|++++ ++++.|+.+.+
T Consensus 334 ~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 334 KLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp EBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred eECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 997 99985 689999999 56898988754
No 52
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=4.1e-19 Score=188.08 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=190.3
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHH----CCC-cccEEEEecCCCCCCCCCChhHHHHhH
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEE----LPY-AVAYDFVPYAQPDGTSSGSYNDLIYQV 381 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~----l~f-~~~~~~~~~~~~~g~~ng~~~~li~~l 381 (829)
.++||||+. +.|+||.+.+ .++++.|+++|+++++++. +|. .+++++++. .|..++.+|
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---------~~~~~~~~l 79 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYD-----NQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---------TSQNRIPLL 79 (287)
T ss_dssp HTEEEEEEC--SEETTTEEEC-----SSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---------CTTTHHHHH
T ss_pred CCeEEEEEc--CCCCCceEEC-----CCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---------CHHHHHHHH
Confidence 568999987 5678898865 3578999999999999976 562 146666664 488999999
Q ss_pred hcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhccc
Q 043276 382 FLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRV 461 (829)
Q Consensus 382 ~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~ 461 (829)
.+|++|+++++++.+++|.+.++||.||...+.++++++.. .
T Consensus 80 ~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--~------------------------------------ 121 (287)
T 2vha_A 80 QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--D------------------------------------ 121 (287)
T ss_dssp HTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS--S------------------------------------
T ss_pred HCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCC--C------------------------------------
Confidence 99999999888899999999999999999999999998553 1
Q ss_pred CCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhC
Q 043276 462 NEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKR 541 (829)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~ 541 (829)
|++++|| .
T Consensus 122 ----------------------------------------------------------------------i~sl~dL--~ 129 (287)
T 2vha_A 122 ----------------------------------------------------------------------IKDFADL--K 129 (287)
T ss_dssp ----------------------------------------------------------------------CCSGGGG--T
T ss_pred ----------------------------------------------------------------------CCCHHHc--C
Confidence 6889999 4
Q ss_pred CCcEEEEeCchHHHHHHhcC---CCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC--CceEEeCcc
Q 043276 542 GDNVGYQKGSFVLGILKQLG---FDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC--SKYTMVEPT 616 (829)
Q Consensus 542 ~~~vg~~~~s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c--~~l~~v~~~ 616 (829)
|+++|+..|+....++++.. ....+++.+.+.++++++|..|+ +|+++.+...+.+++++.. ..+.+++..
T Consensus 130 g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (287)
T 2vha_A 130 GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGKP 205 (287)
T ss_dssp TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESCC
T ss_pred CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCCc
Confidence 88999999998887776531 12456788899999999999999 9999999999998887742 357888877
Q ss_pred cccCCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCCCCC
Q 043276 617 FKTAGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 663 (829)
Q Consensus 617 ~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~~~c 663 (829)
+...+++++++|++| +++.||++|.++.++|.++++.++|+.....|
T Consensus 206 ~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 253 (287)
T 2vha_A 206 QSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP 253 (287)
T ss_dssp SCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBTT
T ss_pred cccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCCc
Confidence 777889999999988 99999999999999999999999999754433
No 53
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.81 E-value=4.8e-19 Score=192.91 Aligned_cols=223 Identities=19% Similarity=0.208 Sum_probs=179.5
Q ss_pred CCCChHHHHHHHHHHH-HHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCC
Q 043276 1 GALNDSSQVGAITAII-KAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT 79 (829)
Q Consensus 1 t~psD~~q~~ai~~ll-~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~a 79 (829)
+.|+|..++.++++++ +++||++|++|+.+++||....+.+.+++++.|+++.....++.+. .++...+.++++.++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~ 194 (346)
T 1usg_A 117 TAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGE--KDFSALIARLKKENI 194 (346)
T ss_dssp CSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CCCHHHHHHHHHTTC
T ss_pred ccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCC--cCHHHHHHHHHhcCC
Confidence 4688999999999998 5689999999999999999999999999999999998776666542 356678888888899
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEecc-CCChhHHHHHHHHHHhh
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYV-PKTKALENFRVRWKRKF 158 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~F~~~w~~~~ 158 (829)
++|++.+....+..+++++++.|+.. -|+.+++|.... .. ......++|++...++. ...+..++|.++|++.+
T Consensus 195 d~i~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~ 269 (346)
T 1usg_A 195 DFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEGVGNAS-LS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK 269 (346)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCCTT-HH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT
T ss_pred CEEEEcCcchHHHHHHHHHHHcCCCC---eEEecCCCCcHH-HH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh
Confidence 99999998888999999999999744 388888775321 11 11224578888776542 35678899999998876
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+. .++.++..+|||++++|+|+++++.. ++..|.++|++.+|.|++|.+
T Consensus 270 ~~--------~~~~~~~~~yda~~~~~~al~~~g~~-----------------------~~~~l~~~l~~~~~~g~~G~i 318 (346)
T 1usg_A 270 KD--------PSGPYVWITYAAVQSLATALERTGSD-----------------------EPLALVKDLKANGANTVIGPL 318 (346)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHHHCCC-----------------------CHHHHHHHHHHHCEEETTEEE
T ss_pred CC--------CCchhHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHHhCCCccceeee
Confidence 53 35678999999999999999998521 267899999999999999999
Q ss_pred EEe-cCccccceEEEEEcc-CC-cEE
Q 043276 239 IFV-DGQLQSSAFEIINVN-NG-ARG 261 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~-~g-~~~ 261 (829)
.|+ +|++....|.|++++ +| ++.
T Consensus 319 ~f~~~g~~~~~~~~i~~~~~~G~~~~ 344 (346)
T 1usg_A 319 NWDEKGDLKGFDFGVFQWHADGSSTK 344 (346)
T ss_dssp CBCTTSSBSSCCCEEEEECTTSCEEE
T ss_pred EECCCCCccCCceEEEEEecCCEEEe
Confidence 997 899866789999998 76 443
No 54
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.80 E-value=3.4e-19 Score=188.52 Aligned_cols=219 Identities=18% Similarity=0.268 Sum_probs=188.6
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. +.|+||.+.+ .++++.|+.+|+++.+++++|++ ++++.+ .|..++.+|.+|++
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~---------~~~~~~~~l~~G~~ 117 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHD-----KDGKLTGYDVEVTRAVAEKLGVK--VEFKET---------QWDSMMAGLKAGRF 117 (283)
T ss_dssp TCEEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHHTSC
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCCCEeeehHHHHHHHHHHcCCc--eEEEEC---------CHHHHHHHHHCCCc
Confidence 468999987 4588898865 36789999999999999999874 555554 48999999999999
Q ss_pred cEEEecccc-ccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 387 DAVVGDTTI-VFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 387 Di~~~~~~i-t~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
|++++++.. +.+|.+.++|+.||...+..+++++...
T Consensus 118 D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~------------------------------------------ 155 (283)
T 2yln_A 118 DVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN------------------------------------------ 155 (283)
T ss_dssp SEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS------------------------------------------
T ss_pred CEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC------------------------------------------
Confidence 999988888 9999999999999999999999985431
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
|++++|| .|++|
T Consensus 156 ------------------------------------------------------------------i~s~~dL--~G~~v 167 (283)
T 2yln_A 156 ------------------------------------------------------------------IKSIADI--KGVKT 167 (283)
T ss_dssp ------------------------------------------------------------------CCSGGGC--TTSEE
T ss_pred ------------------------------------------------------------------CCCHHHh--CCCEE
Confidence 6889999 58899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC-CceEEeC-cccc-cCCc
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC-SKYTMVE-PTFK-TAGF 622 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~-~~~~-~~~~ 622 (829)
|+..|+....++++.+ .+++.+.+..+.+++|.+|+ +|+++.+...+.+++++.. ..+.+++ ..+. ..++
T Consensus 168 ~v~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (283)
T 2yln_A 168 AQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGS 240 (283)
T ss_dssp EECTTSHHHHHHHHTT---CEEEECSSHHHHHHHHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEE
T ss_pred EEecCchHHHHHHHcC---CeEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccE
Confidence 9999999888888753 36778889999999999999 9999999999999887764 2477777 6776 7788
Q ss_pred eeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccCC
Q 043276 623 GFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKH 660 (829)
Q Consensus 623 ~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~ 660 (829)
+++++|++| |.+.||++|.++.++|.+++|.+||++..
T Consensus 241 ~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 241 GLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp CCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 999999988 99999999999999999999999999653
No 55
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.80 E-value=4.9e-19 Score=193.78 Aligned_cols=229 Identities=17% Similarity=0.162 Sum_probs=185.1
Q ss_pred CCCChHHHHHHHHHHH-HHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCC
Q 043276 1 GALNDSSQVGAITAII-KAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT 79 (829)
Q Consensus 1 t~psD~~q~~ai~~ll-~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~a 79 (829)
+.|+|..++.++++.+ +++||++|++|+.+++||....+.+.+++++.|+++.....++.+ ..++...+.++++.++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~ 194 (356)
T 3ipc_A 117 TCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGV 194 (356)
T ss_dssp SSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTC
T ss_pred ecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCC
Confidence 4689999999999954 778999999999999999999999999999999999887777655 3367788899998999
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC-CChhHHHHHHHHHHhh
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP-KTKALENFRVRWKRKF 158 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~F~~~w~~~~ 158 (829)
++|+++++...+..+++++++.|+. ..|+.++++.... .. ......++|++...+..+ ..+..++|.+.|+++
T Consensus 195 d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~~-~~-~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~- 268 (356)
T 3ipc_A 195 SIIYWGGLHTEAGLIIRQAADQGLK---AKLVSGDGIVSNE-LA-SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA- 268 (356)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCC---CEEEECGGGCSHH-HH-HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-
T ss_pred CEEEEccCchHHHHHHHHHHHCCCC---CcEEEeccccCHH-HH-HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-
Confidence 9999999999999999999999974 3478877765321 11 112345788877665543 467899999999987
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+. .++.++..+|||+++++.|+++++.. ++..+.++|++.+|.|++|.+
T Consensus 269 ~~--------~p~~~~~~~yda~~~~~~al~~ag~~-----------------------~~~~~~~~l~~~~~~g~~G~~ 317 (356)
T 3ipc_A 269 GF--------NPEAYTLYSYAAMQAIAGAAKAAGSV-----------------------EPEKVAEALKKGSFPTALGEI 317 (356)
T ss_dssp TC--------CCCTTHHHHHHHHHHHHHHHHHHTCC-----------------------CHHHHHHHHTTCCBCCTTSSB
T ss_pred CC--------CcchhHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHHhCCCCCcceee
Confidence 43 35668999999999999999998531 268899999999999999999
Q ss_pred EEe-cCccccceEEEEEcc-C--C-cEEEEEecCC
Q 043276 239 IFV-DGQLQSSAFEIINVN-N--G-ARGVGFWSPE 268 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~-~--g-~~~VG~w~~~ 268 (829)
.|+ +|++....|.|++++ + | |+.+..|.+.
T Consensus 318 ~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 318 SFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp CBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred EECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 997 999876789999998 5 7 8888888653
No 56
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.80 E-value=1.2e-18 Score=192.30 Aligned_cols=218 Identities=14% Similarity=0.146 Sum_probs=180.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.|++||....+.+.+++++.|++|.....++.+ ..++...+.++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d 197 (375)
T 3i09_A 120 YAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQ 197 (375)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCS
T ss_pred eeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCC
Confidence 3678889999999999999999999999999999999999999999999999988887765 34688899999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC-CChhHHHHHHHHHHhhc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP-KTKALENFRVRWKRKFL 159 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~F~~~w~~~~~ 159 (829)
+|++.+....+..+++++++.|+..+. .++..+.+....... ..+.++|++...++.+ ..+..++|.++|+++|+
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g 273 (375)
T 3i09_A 198 ILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFINDVHAL---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK 273 (375)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS
T ss_pred EEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhhHhhh---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999987665 555554444322111 1245788877766544 36789999999999886
Q ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccEE
Q 043276 160 QENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYI 239 (829)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~ 239 (829)
. .++.++..+|||+++++.|+++++.. ++..|.++|++++|.|++|.+.
T Consensus 274 ~--------~p~~~a~~~Yda~~~~~~Al~~ag~~-----------------------~~~~l~~aL~~~~~~~~~G~~~ 322 (375)
T 3i09_A 274 K--------MPSSLQAADYSSVTTYLKAVQAAGST-----------------------DSDKVMAQLKKMKIDDFYAKGY 322 (375)
T ss_dssp S--------CCCHHHHHHHHHHHHHHHHHHHHTSC-----------------------CHHHHHHHHTTSCEESSSCEEE
T ss_pred C--------CCcHHHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHhCCCccCCCCceE
Confidence 5 36779999999999999999998532 2688999999999999999988
Q ss_pred Ee-cCccccceEEEEEcc
Q 043276 240 FV-DGQLQSSAFEIINVN 256 (829)
Q Consensus 240 F~-~G~~~~~~y~I~n~~ 256 (829)
|+ +|++. ..+.|++++
T Consensus 323 f~~~g~~~-~~~~i~~v~ 339 (375)
T 3i09_A 323 IRTDGSMI-HDMYLMEVK 339 (375)
T ss_dssp ECTTSBEE-CCEEEEEEC
T ss_pred ECCCCCee-eeeEEEEEe
Confidence 97 99986 577788887
No 57
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.80 E-value=3.1e-18 Score=188.18 Aligned_cols=232 Identities=14% Similarity=0.190 Sum_probs=186.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.++++|....+.+.+++++.|++|.....++.+ ..++...+.++++.+++
T Consensus 119 ~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d 196 (368)
T 4eyg_A 119 TSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPD 196 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCS
T ss_pred ecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCC
Confidence 3588899999999999999999999999999999999999999999999999888777755 33677889999988999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~~ 158 (829)
+|++++....+..++++++++|+...++.|+.++++.... ... .....++|++...++.+ ..+..++|.+.| +++
T Consensus 197 ~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~ 273 (368)
T 4eyg_A 197 AMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD-LLN-SMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE 273 (368)
T ss_dssp EEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH-HHT-TCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH
T ss_pred EEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH-HHH-hhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh
Confidence 9999888889999999999999865557788887544221 111 12345788887776654 468899999999 777
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+.. .++.++..+|||++++++|+++++.. .++..|.++|++++|+|++|.+
T Consensus 274 ~~~-------~p~~~~~~~yda~~~~~~al~~~g~~----------------------~~~~~l~~al~~~~~~g~~G~i 324 (368)
T 4eyg_A 274 FGQ-------RPGFMAVGGYDGIHLVFEALKKTGGK----------------------ADGDSLIAAMKGMKWESPRGPI 324 (368)
T ss_dssp HSS-------CCCHHHHHHHHHHHHHHHHHHHTTTC----------------------CSHHHHHHHHTTCEEEETTEEE
T ss_pred CCC-------CCChHHHHHHHHHHHHHHHHHHhCCC----------------------CCHHHHHHHHHcCCcccCCCCe
Confidence 432 36779999999999999999997521 1268899999999999999999
Q ss_pred EEe--cCccccceEEEEEcc--CC-c--EEEEEecC
Q 043276 239 IFV--DGQLQSSAFEIINVN--NG-A--RGVGFWSP 267 (829)
Q Consensus 239 ~F~--~G~~~~~~y~I~n~~--~g-~--~~VG~w~~ 267 (829)
.|+ +|+.. ..+.|++++ +| + +.+|.|.+
T Consensus 325 ~f~~~~~~~~-~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 325 SIDPETRDIV-QNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp EECTTTCCEE-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EECcccCCcc-cceEEEEEEecCCeEEEEEeecccc
Confidence 996 67764 678899888 55 3 55666653
No 58
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.79 E-value=4.8e-19 Score=188.18 Aligned_cols=218 Identities=19% Similarity=0.261 Sum_probs=189.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHC---CCcccEEEEecCCCCCCCCCChhHHHHhHhc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL 383 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l---~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~ 383 (829)
.++||||+. +.|+||.+.+ .++++.|+.+|+++.+++++ |++ ++++.. .|..++..|.+
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~---------~~~~~~~~l~~ 115 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVD-----ANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT---------EAANRVEYVRS 115 (291)
T ss_dssp HTCEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC---------CGGGHHHHHHT
T ss_pred CCeEEEEEc--CCCCCceEEC-----CCCCEeehHHHHHHHHHHHhccCCce--EEEEEc---------cHHHHHHHHhC
Confidence 356999986 5678888865 36789999999999999999 875 555553 48999999999
Q ss_pred CcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 384 GEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 384 g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
|++|++++++..+.+|.+.++|+.||...+..+++++.. .
T Consensus 116 G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~--~-------------------------------------- 155 (291)
T 2yjp_A 116 GKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK--P-------------------------------------- 155 (291)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS--C--------------------------------------
T ss_pred CCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCC--C--------------------------------------
Confidence 999999988889999999999999999999999998553 2
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
|++++|| .|+
T Consensus 156 --------------------------------------------------------------------i~sl~dL--~gk 165 (291)
T 2yjp_A 156 --------------------------------------------------------------------ITDMAQL--KDQ 165 (291)
T ss_dssp --------------------------------------------------------------------CCSGGGG--TTS
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 6899999 488
Q ss_pred cEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCCc-
Q 043276 544 NVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGF- 622 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~- 622 (829)
+||+..|+....++++. ++..+++.+.+.++.+++|.+|+ +|+++.+.+.+.+++++... +.+++..+...++
T Consensus 166 ~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 239 (291)
T 2yjp_A 166 TLLVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDALKDGR----GVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFI 239 (291)
T ss_dssp EEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEE
T ss_pred EEEEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcce
Confidence 99999999988888775 34567788899999999999999 99999999999998888764 7788777777788
Q ss_pred eeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 623 GFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 623 ~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+++++|++| +.+.||++|.++.++|.++++.++|+.
T Consensus 240 ~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 240 APAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp CCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999998 999999999999999999999999986
No 59
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.79 E-value=4.8e-19 Score=188.19 Aligned_cols=218 Identities=19% Similarity=0.220 Sum_probs=188.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHC---CCcccEEEEecCCCCCCCCCChhHHHHhHhc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL 383 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l---~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~ 383 (829)
.++++||+. +.++||.+.+ .++...|+++|+++.+++++ |+++ +++.. .|.+++.+|.+
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~-----~~g~~~G~~~dl~~~i~~~~~~~g~~~--~~~~~---------~~~~~~~~l~~ 104 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVD-----EKGNNQGYDIALAKRIAKELFGDENKV--QFVLV---------EAANRVEFLKS 104 (292)
T ss_dssp HSSEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHHHSCTTCE--EEEEC---------CGGGHHHHHHT
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCCCEeeEhHHHHHHHHHHhccCCceE--EEEEc---------CHHHHHHHHhC
Confidence 457999986 5678888865 36789999999999999999 9754 45543 48999999999
Q ss_pred CcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 384 GEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 384 g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
|++|++++++..+++|.+.++|+.||...+.++++++.. .
T Consensus 105 G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~--~-------------------------------------- 144 (292)
T 1xt8_A 105 NKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS--N-------------------------------------- 144 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC--C--------------------------------------
T ss_pred CCeeEEeecCCCCcchhcceeeeccceecceEEEEECCC--C--------------------------------------
Confidence 999999888889999999999999999999999998553 1
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
+++++|| .|+
T Consensus 145 --------------------------------------------------------------------i~~~~dL--~g~ 154 (292)
T 1xt8_A 145 --------------------------------------------------------------------ITSVEDL--KDK 154 (292)
T ss_dssp --------------------------------------------------------------------CCSSGGG--TTS
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 6889999 488
Q ss_pred cEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCCc-
Q 043276 544 NVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGF- 622 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~- 622 (829)
++|+..|+....++++. ++..+++.+.+.++.+++|.+|+ +|+++.+...+.+++++..+ +.+++..+...++
T Consensus 155 ~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~----vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 228 (292)
T 1xt8_A 155 TLLLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVI 228 (292)
T ss_dssp EEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEE
T ss_pred EEEEeCCCcHHHHHHHh-CCCceEEEcCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcccccccCcee
Confidence 99999999988888765 34557788899999999999999 99999999999999888764 7777766667777
Q ss_pred eeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 623 GFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 623 ~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+++++|++| +.+.+|++|.++.++|.++++.++|+.
T Consensus 229 ~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 229 APAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp CCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999988 999999999999999999999999996
No 60
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.79 E-value=2e-18 Score=189.04 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=184.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++...||++|++|+.+++||....+.+.+++++.|+++.....++.+ ..++...+.++++.+++
T Consensus 119 ~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d 196 (358)
T 3hut_A 119 AITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQ 196 (358)
T ss_dssp SSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCS
T ss_pred ecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCC
Confidence 3688999999999999888999999999999999999999999999999999887777654 33677788888888899
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~~ 158 (829)
+|+++++...+..+++++++.|+. ..|+.+++|.... .. ......++|++...++.+ ..+..++|.+.|++++
T Consensus 197 ~i~~~~~~~~a~~~~~~~~~~g~~---~p~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 271 (358)
T 3hut_A 197 AIYLAMAYEDAAPFLRALRARGSA---LPVYGSSALYSPK-FI-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY 271 (358)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCC---CCEEECGGGCSHH-HH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH
T ss_pred EEEEccCchHHHHHHHHHHHcCCC---CcEEecCcccCHH-HH-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH
Confidence 999999998999999999999974 3478887765321 11 112345788888776654 4688999999999988
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHH-HHHHHhcc-ceecccc
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPK-LLQALSSI-RFRGLTG 236 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~L~~~-~f~G~tG 236 (829)
+. .++.++..+|||+++++.|+++++..+ +.. +.++|+++ .|.|++|
T Consensus 272 ~~--------~p~~~~~~~yda~~~~~~al~~ag~~~-----------------------~~~~~~~~l~~~~~~~g~~G 320 (358)
T 3hut_A 272 GA--------IPTLFAAHGYDAVGIMLAAVGRAGPEV-----------------------TRESLRDALAATDRYAGVTG 320 (358)
T ss_dssp SS--------CCCHHHHHHHHHHHHHHHHHHHHCTTC-----------------------CHHHHHHHHHTCCSEEETTE
T ss_pred CC--------CCCHHHHHHHHHHHHHHHHHHHhCCCC-----------------------hHHHHHHHHHhcCCCcCCce
Confidence 76 367899999999999999999985332 466 99999999 8999999
Q ss_pred cEEEe-cCccccceEEEEEccCC-cEEEEEecC
Q 043276 237 DYIFV-DGQLQSSAFEIINVNNG-ARGVGFWSP 267 (829)
Q Consensus 237 ~~~F~-~G~~~~~~y~I~n~~~g-~~~VG~w~~ 267 (829)
.+.|+ +|++....+.|+++++| ++.+..+.+
T Consensus 321 ~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 321 ITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp EEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred eeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 99997 89975578899998844 777655554
No 61
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.77 E-value=6.2e-18 Score=186.77 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=179.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.|++||+...+.+.+++++.|++|+....++.+. .++...+.++++++++
T Consensus 122 ~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d 199 (379)
T 3n0w_A 122 FLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET--QDFSSYLLQAKASGAQ 199 (379)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC--CCCHHHHHHHHHHTCS
T ss_pred EeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CCHHHHHHHHHHCCCC
Confidence 46788999999999999999999999999999999999999999999999999888887653 3678899999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCC-ChhHHHHHHHHHHhhc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPK-TKALENFRVRWKRKFL 159 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~F~~~w~~~~~ 159 (829)
+|++.+....+..++++++++|+..+. .|+.+.++.... . .....+.++|++...++.+. .+..++|.++|+++|+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g 276 (379)
T 3n0w_A 200 LIVSTSGGAANINIMKQAREFGLPSKT-QKVGGMIDILTD-V-KSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG 276 (379)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCSCSS-CEEECCBCCHHH-H-HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS
T ss_pred EEEEecccchHHHHHHHHHHcCCCCCC-cEEEecccchHH-H-HhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC
Confidence 999999989999999999999986543 455555543211 1 11122457888777665443 6789999999999886
Q ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceeccccc-E
Q 043276 160 QENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGD-Y 238 (829)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~-~ 238 (829)
. .++.++..+|||+++++.|+++++.. ++..|.++|++++|.|..|. +
T Consensus 277 ~--------~p~~~~~~~Yda~~~~~~Al~~ag~~-----------------------~~~~v~~aL~~~~~~~~~G~~~ 325 (379)
T 3n0w_A 277 K--------MPTNNQAGGYSAALQYLKAVNAIGSK-----------------------DPQKVFAYLKTIKFDDAVTRHG 325 (379)
T ss_dssp S--------CCCHHHHHHHHHHHHHHHHHHHHTCC-----------------------CHHHHHHHHTTCCBCSSSCCSB
T ss_pred C--------CCChHHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHhcCCccccCCCce
Confidence 5 36789999999999999999998532 26889999999999999886 7
Q ss_pred EEe-cCccccceEEEEEcc
Q 043276 239 IFV-DGQLQSSAFEIINVN 256 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~ 256 (829)
.|+ +|++. ..+.|++++
T Consensus 326 ~f~~~g~~~-~~~~i~~~~ 343 (379)
T 3n0w_A 326 TLRPGGRLV-RDMYLVRAK 343 (379)
T ss_dssp EECTTSBEE-CCEEEEEEC
T ss_pred eECCCCCcc-cceEEEEEE
Confidence 896 99985 678899887
No 62
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.76 E-value=3.3e-17 Score=180.34 Aligned_cols=226 Identities=11% Similarity=0.118 Sum_probs=180.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.+++..|+.+++++++..||++|++|+.|++||....+.+.+.+++.|++|+..+.++.+. .|+..++.+|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~pd 196 (371)
T 4f06_A 119 TSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLST--TDFGPIMQRIKNSGAD 196 (371)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHTCS
T ss_pred cccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCccc--ccHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999998764 4789999999999999
Q ss_pred EEEEEcC-hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHh
Q 043276 81 VFILHML-PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRK 157 (829)
Q Consensus 81 ViIv~~~-~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~ 157 (829)
+|++++. .+.+..+++++++.|+...++.++.+......... ........|++...++.+ .+|..+.|.+.|++.
T Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~ 274 (371)
T 4f06_A 197 MIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTEPDL--PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKG 274 (371)
T ss_dssp EEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCGGGH--HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHT
T ss_pred EEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCHHHH--HhcccccCceEEeeccccCCCChhHHHHHHHHHHh
Confidence 9988775 46788899999999987666666665543322111 123345678877766543 568889999999988
Q ss_pred hcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceeccccc
Q 043276 158 FLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGD 237 (829)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~ 237 (829)
++.. ..++.++..+|||+++++.|+++.... .++..+.++|++++|.|++|.
T Consensus 275 ~~~~------~~~~~~a~~~Yda~~~l~~Ai~~~ag~----------------------~d~~~v~~al~~~~~~~~~G~ 326 (371)
T 4f06_A 275 GAKL------DEVTMTSVAAYDGARLIYKMIEATSGK----------------------SDPDKAIAAVKGMKWVSPRGE 326 (371)
T ss_dssp TCCG------GGCCHHHHHHHHHHHHHHHHHHHTTTS----------------------CCHHHHHHHHTTCEEEETTEE
T ss_pred cCCC------CCccchHHHHHHHHHHHHHHHHHhcCC----------------------CCHHHHHHHHhCCCeeCCcEE
Confidence 7542 135678999999999999999864211 126889999999999999999
Q ss_pred EEEe-cCccccceEEEEEcc--CC
Q 043276 238 YIFV-DGQLQSSAFEIINVN--NG 258 (829)
Q Consensus 238 ~~F~-~G~~~~~~y~I~n~~--~g 258 (829)
+.|+ +|+.....+.|.+++ +|
T Consensus 327 i~fd~~~~~~~~~~~i~~v~~~dG 350 (371)
T 4f06_A 327 VSIDPETRHITQNVYLREVEKVDG 350 (371)
T ss_dssp EEECTTTCBEEEEEEEEEEEEETT
T ss_pred EEEcCCCCcccCCEEEEEEEecCC
Confidence 9996 554434567787777 55
No 63
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.75 E-value=2.5e-17 Score=182.69 Aligned_cols=238 Identities=16% Similarity=0.144 Sum_probs=183.7
Q ss_pred CCCChHHHHHHHHHHHHH-cCCcEEEEEEE-eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHH--hhc
Q 043276 1 GALNDSSQVGAITAIIKA-FGWREAVPIYV-DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYK--LFT 76 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~-fgW~~V~iI~~-dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~--lk~ 76 (829)
+.|+|..|+.++++++.. +||++|++|+. +++||....+.+.+++++.|++|.....++.+ ..++...+.+ |++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~ 197 (391)
T 3eaf_A 120 PAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLA 197 (391)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHH
Confidence 478999999999999866 79999999999 99999999999999999999999988887765 3478899999 999
Q ss_pred CCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccc-eEEEEecc-----CCChhHHHH
Q 043276 77 MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQG-VIGVRPYV-----PKTKALENF 150 (829)
Q Consensus 77 ~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g-~l~~~~~~-----~~~~~~~~F 150 (829)
.++++|++.++...+..++++++++|+.. .|+.++++. ...... .....++| ++...++. ...+. .+|
T Consensus 198 ~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~-~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f 271 (391)
T 3eaf_A 198 ADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLTNVWGF-DERSPQ-LIGEGGYGKVFGISPFIYPMFGQDVEG-IQT 271 (391)
T ss_dssp TCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEECGGGC-STTHHH-HHCGGGTTSEEEEESBCCGGGCTTCHH-HHH
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEEeccCC-CHHHHH-hhhhhccCcEEEEEEecCcccCCCCch-hHH
Confidence 99999999999999999999999999733 355554332 211111 22345789 77766554 34455 679
Q ss_pred HHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccc
Q 043276 151 RVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIR 230 (829)
Q Consensus 151 ~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~ 230 (829)
.++|+++|+...| .++.++..+|||+++++.|++++..... ...++..+.++|++..
T Consensus 272 ~~~~~~~~~~~~p-----~~~~~~~~~yda~~~l~~Al~~a~~~g~------------------~~~~~~~v~~aL~~~~ 328 (391)
T 3eaf_A 272 IFEAARMNGVSED-----QINLRVVQGFVNVWLLIKAIESVTSQDL------------------QERGGEALKEALEANT 328 (391)
T ss_dssp HHHHHHHTTCCGG-----GCCHHHHHHHHHHHHHHHHHTTSCHHHH------------------HHHTHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCc-----ccccHHHHHHHHHHHHHHHHHHHHhcCC------------------CCCCHHHHHHHHHhCC
Confidence 9999998872111 1247899999999999999998721000 0012678999999988
Q ss_pred ee--cccc-cEEEe-cCccccceEEEEEc-cCC-cEEEEEecCCC
Q 043276 231 FR--GLTG-DYIFV-DGQLQSSAFEIINV-NNG-ARGVGFWSPEK 269 (829)
Q Consensus 231 f~--G~tG-~~~F~-~G~~~~~~y~I~n~-~~g-~~~VG~w~~~~ 269 (829)
|. |++| .+.|+ +|......+.|+++ ++| ++.|+.|....
T Consensus 329 ~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 329 FDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp BCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECCCT
T ss_pred CCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecCcc
Confidence 99 9999 99996 55444578999999 555 99999997543
No 64
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.74 E-value=1.2e-17 Score=185.45 Aligned_cols=240 Identities=10% Similarity=0.046 Sum_probs=187.2
Q ss_pred CCChHHHHHHHHHHHHH-cCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 2 ALNDSSQVGAITAIIKA-FGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 2 ~psD~~q~~ai~~ll~~-fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
.|+|..++.++++++.. +||++|++|+.+++||....+.+.+++++.|++|.....++.+ ..++...+.++++.+++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d 200 (392)
T 3lkb_A 123 TTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVE 200 (392)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCC
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCC
Confidence 57899999999998865 7999999999999999999999999999999999888777654 34678889999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~~ 158 (829)
+|+++++...+..++++++++|+. -.|+.++++... .... ......+|++...++.+ ..+..++|.++|++++
T Consensus 201 av~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~~~~~-~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 275 (392)
T 3lkb_A 201 YVVHQNVAGPVANILKDAKRLGLK---MRHLGAHYTGGP-DLIA-LAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY 275 (392)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCC---CEEEECGGGCSH-HHHH-HHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT
T ss_pred EEEEecCcchHHHHHHHHHHcCCC---ceEEEecCcccH-HHHH-hhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh
Confidence 999999999999999999999973 346776655321 1111 12345788888776533 2456788999999888
Q ss_pred cccCCCCCcccc-chhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccc----ee-
Q 043276 159 LQENPSLFDAEL-NIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIR----FR- 232 (829)
Q Consensus 159 ~~~~~~~~~~~~-~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~----f~- 232 (829)
+.. .... +.++..+|||+++++.|+++++.... ..++..+.++|++++ |+
T Consensus 276 ~~~-----p~~~~~~~~~~~yda~~~~~~al~~ag~~~~-------------------~~~~~~v~~aL~~~~~~~~~~~ 331 (392)
T 3lkb_A 276 GRP-----ENFIESVNYTNGMLAAAIAVEAIRRAQERFK-------------------RITNETVYQAIVGMNGPNAFKP 331 (392)
T ss_dssp TCC-----HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHS-------------------SCCHHHHHHHHHTCCGGGCBCC
T ss_pred CCC-----cccccchhHHHHHHHHHHHHHHHHHhhccCC-------------------CCCHHHHHHHHHhcCCCcCccc
Confidence 652 0001 23478999999999999999864210 113788999999997 98
Q ss_pred ------cccccEEEe-cCccccceEEEEEcc-CCcEEEEEecCCCCcc
Q 043276 233 ------GLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWSPEKGLT 272 (829)
Q Consensus 233 ------G~tG~~~F~-~G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~ 272 (829)
|++|.+.|+ +|+.....+.|++++ ++++.||.|....++.
T Consensus 332 ~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 332 GFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp SSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHHHH
T ss_pred ccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhHHH
Confidence 999999996 777655678888888 5599999997654443
No 65
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.73 E-value=2.2e-16 Score=174.68 Aligned_cols=233 Identities=15% Similarity=0.102 Sum_probs=178.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.++|..++.++++++...||++|++|+.+++||....+.+.+++++.|+++.....++......++...+.+|++.+++
T Consensus 120 v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pd 199 (385)
T 1pea_A 120 GGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARAD 199 (385)
T ss_dssp CSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCS
T ss_pred ecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCC
Confidence 35788899999999999999999999999989999999999999999999988765565422456788889999888899
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEecc--CCChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYV--PKTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~F~~~w~~~~ 158 (829)
+|++.++...+..++++++++|+.... +++++.+|... .. .....+.++|+++..++. ...+..++|.+.|+++|
T Consensus 200 aI~~~~~~~~a~~~~~~~~~~G~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 276 (385)
T 1pea_A 200 VVFSTVVGTGTAELYRAIARRYGDGRR-PPIASLTTSEA-EV-AKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFF 276 (385)
T ss_dssp EEEEECCTHHHHHHHHHHHHHHCSSCC-CCEEESSCCHH-HH-TTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTS
T ss_pred EEEEecccccHHHHHHHHHHcCCCcCC-ceEEecccchH-HH-HhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHh
Confidence 999988888899999999999975333 34444445431 11 111123578888877654 35678899999999887
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+... .++.++..+|||++++++|+++++.. ++..|.++|++++|.|++|.+
T Consensus 277 g~~~------~~~~~~~~~yda~~~~~~Al~~ag~~-----------------------~~~~l~~al~~~~~~g~~G~i 327 (385)
T 1pea_A 277 PENA------TITAWAEAAYWQTLLLGRAAQAAGNW-----------------------RVEDVQRHLYDIDIDAPQGPV 327 (385)
T ss_dssp CTTC------CCCHHHHHHHHHHHHHHHHHHHHTSC-----------------------CHHHHHHHHTTCCEEETTEEE
T ss_pred CCCC------CCChHHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHhhCcccCCCCCe
Confidence 6421 25678999999999999999998532 268899999999999999999
Q ss_pred EEe-cCccccceEEEEEc-cCC-cEEEEEe
Q 043276 239 IFV-DGQLQSSAFEIINV-NNG-ARGVGFW 265 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~-~~g-~~~VG~w 265 (829)
.|+ +|+.....+.|.++ ++| ++.|...
T Consensus 328 ~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 328 RVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp EECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred EEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 996 34333457788888 444 6666443
No 66
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.72 E-value=1.2e-16 Score=175.35 Aligned_cols=223 Identities=13% Similarity=0.133 Sum_probs=176.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.+++||....+.+.+++++.|++|.....++.+ ..++...+.++++.+++
T Consensus 121 ~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d 198 (364)
T 3lop_A 121 IKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQ 198 (364)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCS
T ss_pred eCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCC
Confidence 4678999999999999999999999999999999999999999999999999887777655 34678889999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCcccc-ccccceEEEEe----ccCCChhHHHHHHHHH
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVT-DSMQGVIGVRP----YVPKTKALENFRVRWK 155 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~-~~~~g~l~~~~----~~~~~~~~~~F~~~w~ 155 (829)
+|+++++...+..++++++++|+..+ |+..+++.... ... ... ..++|++.... .....+..++|.+.|+
T Consensus 199 ~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~~-~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 273 (364)
T 3lop_A 199 AIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPGI-LQK-VAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARA 273 (364)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHHH-HHH-HHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChHH-HHH-HhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999997543 77777665321 111 122 45778876652 2256788999999999
Q ss_pred HhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhcc-ceec-
Q 043276 156 RKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSI-RFRG- 233 (829)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G- 233 (829)
++++.. ..++.++..+|||+++++.|+++++.+ .++..|.++|+++ .|+|
T Consensus 274 ~~~~~~------~~p~~~a~~~yda~~~~~~al~~ag~~----------------------~~~~~v~~aL~~~~~~~~~ 325 (364)
T 3lop_A 274 AVGAKD------VDLSFRAVEGFVAAKVLAEAIRRAGPK----------------------PTREQVRHALTELRDYDVG 325 (364)
T ss_dssp HHTCTT------CCCCHHHHHHHHHHHHHHHHHHHHCSS----------------------CCHHHHHHHHHTCEEEESS
T ss_pred HhcCCC------CCCChHHHHHHHHHHHHHHHHHHhCCC----------------------CCHHHHHHHHHhcCCccCC
Confidence 987652 135678999999999999999998521 1268899999999 6999
Q ss_pred ccccEEEe-cCccccceEEEEEcc-CC
Q 043276 234 LTGDYIFV-DGQLQSSAFEIINVN-NG 258 (829)
Q Consensus 234 ~tG~~~F~-~G~~~~~~y~I~n~~-~g 258 (829)
.+|.+.|+ ++........|..+. ++
T Consensus 326 ~~g~i~f~~~~~~~~~~~~i~~~~~~~ 352 (364)
T 3lop_A 326 GGFTVDFTDRSRPGSHYIELGVVGPNG 352 (364)
T ss_dssp TTCEEECSSTTSCSCCCCEEEEECTTS
T ss_pred CCeeeecCCCCcCCcceEEEEEEcCCC
Confidence 99999996 554333344566665 44
No 67
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.69 E-value=1.9e-16 Score=174.42 Aligned_cols=214 Identities=17% Similarity=0.229 Sum_probs=164.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC--
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-- 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~-- 78 (829)
+.|++..++.+++.+++++|| +|++|+.|++||....+.|.+.+++.|++|+....++.+ ..++...+.+|++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~ 198 (374)
T 3n0x_A 122 TGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKD 198 (374)
T ss_dssp CSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTT
T ss_pred ccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCC
Confidence 468899999999988899999 799999999999999999999999999999998888766 347888999999887
Q ss_pred ---CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEec---cCCChhHHHHHH
Q 043276 79 ---TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPY---VPKTKALENFRV 152 (829)
Q Consensus 79 ---arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~F~~ 152 (829)
+++|++.+..... .+.++.++++...++.++..+....... ......|+.+.... .+..+..++|.+
T Consensus 199 ~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~ 271 (374)
T 3n0x_A 199 KPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVT 271 (374)
T ss_dssp CSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCCCTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHH
T ss_pred CCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccccchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHH
Confidence 9998887433211 2345666666555566554433221111 11334566665432 345788999999
Q ss_pred HHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhcccee
Q 043276 153 RWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFR 232 (829)
Q Consensus 153 ~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~ 232 (829)
+|+++|+. .++.++..+|||+++++.|+++++.. ++..|.++|++++|+
T Consensus 272 ~y~~~~g~--------~p~~~a~~~Yda~~~l~~Al~~ag~~-----------------------~~~~v~~aL~~~~~~ 320 (374)
T 3n0x_A 272 EHQKRFNA--------PPDFFTAGGFSAAMAVVTAVQKAKST-----------------------DTEKLIAAMEGMEFD 320 (374)
T ss_dssp HHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC-----------------------CHHHHHHHHTTCEEE
T ss_pred HHHHHHCC--------CCChhHHHHHHHHHHHHHHHHHhCCC-----------------------CHHHHHHHHhcCCcc
Confidence 99999875 46789999999999999999998532 268899999999999
Q ss_pred cccccEEEe--cCccccceEEEEEcc
Q 043276 233 GLTGDYIFV--DGQLQSSAFEIINVN 256 (829)
Q Consensus 233 G~tG~~~F~--~G~~~~~~y~I~n~~ 256 (829)
|++|.+.|+ +|+.. ..+.|++++
T Consensus 321 g~~G~i~f~~~~~~~~-~~~~i~~~~ 345 (374)
T 3n0x_A 321 TPKGKMVFRKEDHQAL-QSMYHFKVK 345 (374)
T ss_dssp ETTEEEEECTTTCBEE-CCEEEEEEE
T ss_pred CCCCCEEECcccCccc-cceEEEEEE
Confidence 999999996 56654 678888887
No 68
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.69 E-value=3.1e-16 Score=171.53 Aligned_cols=230 Identities=15% Similarity=0.088 Sum_probs=177.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.+++||....+.+.+++++.|+++.....++.+ ..++...+.++++.+++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d 192 (362)
T 3snr_A 115 MPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPD 192 (362)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCS
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999999999999999999999877777655 33577788888888999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEec----------cCCChhHHHH
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPY----------VPKTKALENF 150 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~----------~~~~~~~~~F 150 (829)
+|++++....+..+++++++.|+..+ ++.++++.... .. ......++|++....+ .+..+..++|
T Consensus 193 av~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 267 (362)
T 3snr_A 193 AILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD-FI-RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMAL 267 (362)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH-HH-HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHH
T ss_pred EEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH-HH-HHhHHHhCCCEEecccccccccCCCcCcccHHHHHH
Confidence 99999989999999999999997443 47776665321 11 1123457888776532 1223568999
Q ss_pred HHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhcc-
Q 043276 151 RVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSI- 229 (829)
Q Consensus 151 ~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~- 229 (829)
.+.|+++++.. .++.++..+|||+++++.|+++++..... +...++..|.++|+++
T Consensus 268 ~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~a~~~~~~----------------g~~~~~~~~~~al~~~~ 324 (362)
T 3snr_A 268 VKVYEEKYGPS-------SRSQFAGHSYDAFKVLERVVPVALKKAKP----------------GTQEFREALREAFLTEK 324 (362)
T ss_dssp HHHHHHHHCTT-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCT----------------TSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCC-------CCCchhHhHHHHHHHHHHHHHHhhccccC----------------CCcchHHHHHHHHHhcC
Confidence 99999988763 35778999999999999999998643210 0011267899999999
Q ss_pred ceecccccEEEe-c---CccccceEEEEEccCC-cEE
Q 043276 230 RFRGLTGDYIFV-D---GQLQSSAFEIINVNNG-ARG 261 (829)
Q Consensus 230 ~f~G~tG~~~F~-~---G~~~~~~y~I~n~~~g-~~~ 261 (829)
.|.|++|.+.|+ + |.. ...+.|+++++| ++.
T Consensus 325 ~~~g~~G~~~f~~~~~~g~~-~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 325 DIAASQGVYNFTETDRYGLD-DRSRILLTVKNGKYVI 360 (362)
T ss_dssp CEECSSCEECCCSSCSSCCC-GGGCEEEEEETTEEEE
T ss_pred CcccceeeEEeCCCCCCCCC-CCCeEEEEEECCEEEE
Confidence 899999999995 3 433 356788888743 443
No 69
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.67 E-value=7.1e-17 Score=167.47 Aligned_cols=214 Identities=15% Similarity=0.263 Sum_probs=176.0
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHC---CCcccEEEEecCCCCCCCCCChhHHHHhHhc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL 383 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l---~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~ 383 (829)
.++||||+. +.++||.+.+. .++++.|+++|+++.+++++ |++ ++++.. .|.+++..|.+
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~----~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~---------~~~~~~~~l~~ 99 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQ----ATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV---------NAKTRGPLLDN 99 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEET----TTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC---------CTTTHHHHHHT
T ss_pred CCeEEEEEC--CCCCCeEEEEC----CCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc---------CHHHHHHHHhC
Confidence 467999986 56778887642 26789999999999999999 875 455553 47899999999
Q ss_pred CcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCC
Q 043276 384 GEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNE 463 (829)
Q Consensus 384 g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~ 463 (829)
|++|++++++..+++|.+.++|+.||.....++++++...
T Consensus 100 g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------------------------------------- 139 (259)
T 2v25_A 100 GSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK---------------------------------------- 139 (259)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC----------------------------------------
T ss_pred CCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC----------------------------------------
Confidence 9999998888888999999999999999999999985431
Q ss_pred CCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD 543 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~ 543 (829)
+++++||. ++
T Consensus 140 --------------------------------------------------------------------i~~~~dL~--g~ 149 (259)
T 2v25_A 140 --------------------------------------------------------------------YKSLADMK--GA 149 (259)
T ss_dssp --------------------------------------------------------------------CCSGGGCT--TC
T ss_pred --------------------------------------------------------------------CCCHHHhC--CC
Confidence 57899994 88
Q ss_pred cEEEEeCchHHHHHHh----cCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCccccc
Q 043276 544 NVGYQKGSFVLGILKQ----LGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKT 619 (829)
Q Consensus 544 ~vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~ 619 (829)
++++..|+....++++ .+++ .+++.+.+.++.+++|..|+ +|+++.+...+.++.++..+ +++..+..
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~---~~~~~~~~ 221 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKR----VDAFSVDKSILLGYVDDKSE---ILPDSFEP 221 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHTTTCCTTEE---ECSCCCSE
T ss_pred EEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCC----CcEEEecHHHHHHHHHhCCC---cccccccc
Confidence 9999999877766654 3442 25678889999999999999 99999998888777766542 55666666
Q ss_pred CCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHc
Q 043276 620 AGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 620 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
.+++++++|++| +.+.+|++|.++.++ ++++.+||.
T Consensus 222 ~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 222 QSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp EEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred ceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 788999999986 999999999999999 899999984
No 70
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.66 E-value=4.6e-16 Score=171.92 Aligned_cols=230 Identities=17% Similarity=0.157 Sum_probs=176.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++++.++||++|++|+.+++||....+.+.+++++.|++|.....++.+ ..++...+.++++.+++
T Consensus 139 ~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~d 216 (386)
T 3sg0_A 139 VVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPD 216 (386)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCS
T ss_pred cCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999999999999999999999877777655 33677888999989999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEec------cC-CC---hhHHHH
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPY------VP-KT---KALENF 150 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~------~~-~~---~~~~~F 150 (829)
+|+++++...+..+++++++.|+.. -++.++++... .... ......+|++....+ .+ .. +..++|
T Consensus 217 av~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f 291 (386)
T 3sg0_A 217 AVFIASAGTPAVLPQKALRERGFKG---AIYQTHGVATE-EFIK-LGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARF 291 (386)
T ss_dssp EEEEECCSGGGHHHHHHHHHTTCCS---EEECCGGGCSH-HHHH-HHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHH
T ss_pred EEEEecCcchHHHHHHHHHHcCCCC---cEEeccccCCH-HHHH-hhhhhcCCeEEecccccccccCCCCCcchHHHHHH
Confidence 9999999889999999999999753 36666665432 1111 123457888776532 12 22 457899
Q ss_pred HHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhcc-
Q 043276 151 RVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSI- 229 (829)
Q Consensus 151 ~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~- 229 (829)
.+.|+++|+.. .++.++..+|||+++++.|++++...... +...++..+.++|.++
T Consensus 292 ~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~a~~~~~~----------------g~~~~~~~~~~al~~~~ 348 (386)
T 3sg0_A 292 VDAYKAANGGA-------APTIFGVHLWDSMTLVENAIPAALKAAKP----------------GTPEFRAAIRDQIEKSK 348 (386)
T ss_dssp HHHHHHHTTTC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCT----------------TSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCC-------CCChhHHHHHHHHHHHHHHHHHhhhccCC----------------CCcchHHHHHHHHHhcc
Confidence 99999988763 25678999999999999999998543200 0011257899999999
Q ss_pred ceecccccEEEe-c---CccccceEEEEEccCC-cEE
Q 043276 230 RFRGLTGDYIFV-D---GQLQSSAFEIINVNNG-ARG 261 (829)
Q Consensus 230 ~f~G~tG~~~F~-~---G~~~~~~y~I~n~~~g-~~~ 261 (829)
.|.|++|.+.|+ + |.. ...+.|+++++| ++.
T Consensus 349 ~~~g~~G~~~f~~~~~~g~~-~~~~~i~~~~~G~~~~ 384 (386)
T 3sg0_A 349 DLALNNGLSNMTPDNHNGYD-ERSAFLIEIRDGAFRL 384 (386)
T ss_dssp SEEETTEEECCCSSCSSCCC-GGGCEEEEEETTEEEE
T ss_pred CccccceeEEECCCcCCCCC-CCceEEEEEECCEEEe
Confidence 899999999995 3 333 345778887744 443
No 71
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.65 E-value=2.1e-15 Score=164.64 Aligned_cols=219 Identities=17% Similarity=0.234 Sum_probs=165.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCc-EEEEEEEe-CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC
Q 043276 1 GALNDSSQVGAITAIIKAFGWR-EAVPIYVD-NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~-~V~iI~~d-d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ 78 (829)
++|+|..|+.+++.++...+|+ ++++++.+ ++||.+..+.+.+ +.|.+|+..+.++.+. .|+..++.++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~~--~d~~~~l~~i~~~~ 196 (353)
T 4gnr_A 122 GTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRE---SYKGEIVADETFVAGD--TDFQAALTKMKGKD 196 (353)
T ss_dssp CSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHH---HCCSEEEEEEEECTTC--CCCHHHHHHHHTSC
T ss_pred cCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHH---HcCCEEEEEEeeCCCC--CCHHHHHHHHHhcC
Confidence 4689999999999999665554 55555443 4688877776654 4588999888888764 47899999999999
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEecc---CCChhHHHHHHHHH
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYV---PKTKALENFRVRWK 155 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~---~~~~~~~~F~~~w~ 155 (829)
+++|++.+...++..++++++++|+.. .|+.++++..... ......+..+|.+....+. +.++..++|.+.|+
T Consensus 197 ~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~ 272 (353)
T 4gnr_A 197 FDAIVVPGYYNEAGKIVNQARGMGIDK---PIVGGDGFNGEEF-VQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYR 272 (353)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHTTCCS---CEEECGGGCSHHH-HHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCC---cEEEecccccchh-hhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999743 3666666543211 1111234566776665433 34678899999999
Q ss_pred HhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhcc-ceecc
Q 043276 156 RKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSI-RFRGL 234 (829)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G~ 234 (829)
++++. .++.++..+|||++++|.|++++. ++..+.++|.++ .|+|+
T Consensus 273 ~~~g~--------~p~~~a~~~Yda~~~la~Ai~~a~-------------------------~~~~v~~aL~~~~~~~g~ 319 (353)
T 4gnr_A 273 AKYNE--------EPSTFAALAYDSVHLVANAAKGAK-------------------------NSGEIKDNLAXTKDFEGV 319 (353)
T ss_dssp HHHSS--------CCCHHHHHHHHHHHHHHHHHTTCS-------------------------SHHHHHHHHHTCCCEEET
T ss_pred HHhCC--------CCChhHHHHHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHhcCCCccC
Confidence 99876 467899999999999999997532 146789999987 59999
Q ss_pred cccEEEe-cCccccceEEEEEccCC-cEEE
Q 043276 235 TGDYIFV-DGQLQSSAFEIINVNNG-ARGV 262 (829)
Q Consensus 235 tG~~~F~-~G~~~~~~y~I~n~~~g-~~~V 262 (829)
+|++.|+ +|+.. ..+.|+++++| ++.+
T Consensus 320 ~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~ 348 (353)
T 4gnr_A 320 TGQTSFDADHNTV-KTAYMMTMNNGKVEAA 348 (353)
T ss_dssp TEEECCCTTSCCC-CCEEEEEEETTEEEEE
T ss_pred ceeEEECCCcCCc-CCeEEEEEECCEEEEE
Confidence 9999997 99986 56668887755 5444
No 72
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.39 E-value=2.3e-12 Score=138.84 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=156.8
Q ss_pred CCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 2 ALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 2 ~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
.+++..|+.++++++...|++++++|+.+++||++..+.|.+++++.|++|+..+.++.. +....+.+++..++++
T Consensus 105 ~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~~~~~~~~~~~~~~da 180 (327)
T 3ckm_A 105 GLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----ADVTYFVQENNSNTTA 180 (327)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----THHHHHHHHSCTTCCE
T ss_pred ecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----chhhHHHHHhccCCcE
Confidence 578899999999999889999999999999999999999999999999999988887654 2235667788899999
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEe-c--cCCChhHHHHHHHHHHhh
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRP-Y--VPKTKALENFRVRWKRKF 158 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~-~--~~~~~~~~~F~~~w~~~~ 158 (829)
+++.+++.++..+.+++++.|+ +..++.++++..............++|++.... . .+..+..+.|..+|+..+
T Consensus 181 i~~~~~~~~~~~i~~q~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 257 (327)
T 3ckm_A 181 LYAVASPTELAEMKGYLTNIVP---NLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY 257 (327)
T ss_dssp EEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH
T ss_pred EEEEcCHHHHHHHHHHHHhhhc---cCCEEeeeccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999885 456777776653322222112234667665543 2 345677888887776654
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+. ..+.+++|||+.+++.+.+... +....|.|+||.+
T Consensus 258 ~~----------~~~~AlgyDA~~l~~~l~~~~~---------------------------------~~~~~f~G~tG~i 294 (327)
T 3ckm_A 258 QL----------MRLYAMGADAWLLINQFNELRQ---------------------------------VPGYRLSGLTGIL 294 (327)
T ss_dssp HH----------HHHHHHHHHHHHHHHTHHHHHH---------------------------------STTCCEEETTEEE
T ss_pred CC----------CchHHHHHHHHHHHHHHHHhcC---------------------------------CCCCCceeceEEE
Confidence 32 2366789999988765543321 1223699999999
Q ss_pred EEe-cCccccceEEEEEccCC-cEEEE
Q 043276 239 IFV-DGQLQSSAFEIINVNNG-ARGVG 263 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~~g-~~~VG 263 (829)
.|+ +|+.. ....+.++++| ++.|.
T Consensus 295 ~fd~~G~~~-r~l~~~~~~~G~~vpv~ 320 (327)
T 3ckm_A 295 SADTNCNVE-RDMTWYQYQDGAIVPVV 320 (327)
T ss_dssp EECTTCBEE-EECEEEEEETTEEEECC
T ss_pred EECCCCCCc-cccEEEEEECCEEEEcc
Confidence 997 99864 56777777644 56553
No 73
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.24 E-value=5e-11 Score=127.54 Aligned_cols=203 Identities=10% Similarity=0.058 Sum_probs=150.8
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFI 83 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViI 83 (829)
++..|+.++++.+...|.+++++|+.+++||++..+.|.+++++.|++|+..+.++.. +|+...|+++ ..++++|+
T Consensus 105 ~~~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~---~d~~~~l~~i-~~~pDaV~ 180 (325)
T 2h4a_A 105 SPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQEN-NSNTTALY 180 (325)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHS-TTCCCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH---HHHHHHHHhc-CCCCCEEE
Confidence 4556799999999888999999999999999999999999999999999988888753 4899999998 47899999
Q ss_pred EEcChhHHHHHHHHHHHcCccccCeEEEEcCcccc-ccccCCccccccccceEEEE-ec--cCCChhHHHHHHHHHHhhc
Q 043276 84 LHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTN-LLRTLEPSVTDSMQGVIGVR-PY--VPKTKALENFRVRWKRKFL 159 (829)
Q Consensus 84 v~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~-~~~~~~~~~~~~~~g~l~~~-~~--~~~~~~~~~F~~~w~~~~~ 159 (829)
+.++...+..+..++++.|. +--.+.+++|.. ... ........++|++... |. .+..+.+++|.+.|+..+
T Consensus 181 ~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~~-~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~- 255 (325)
T 2h4a_A 181 AVASPTELAEXKGYLTNIVP---NLAIYASSRASASATN-TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY- 255 (325)
T ss_dssp ECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHH-TCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH-
T ss_pred EeCCHHHHhhhhhhHhhcCC---CCCEEEeccccccCCC-CCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc-
Confidence 99999999888888887653 445667777761 111 1222345688987655 33 244567788877665332
Q ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccEE
Q 043276 160 QENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYI 239 (829)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~ 239 (829)
.+..+.+.+|||+.+++++ .++. .+....|.|+||.++
T Consensus 256 ---------~~~rl~AlgyDA~~l~~~l-~~l~--------------------------------~~~~~~~~G~tG~l~ 293 (325)
T 2h4a_A 256 ---------QLMRLYAMGADAWLLINQF-NELR--------------------------------QVPGYRLSGLTGILS 293 (325)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTH-HHHH--------------------------------HSTTCCEEETTEEEE
T ss_pred ---------chHHHHHHHHHHHHHHHHH-HHHh--------------------------------hCCCCeeccCceeEE
Confidence 2445678999999986654 3321 122346999999999
Q ss_pred Ee-cCccccceEEEEEccCC
Q 043276 240 FV-DGQLQSSAFEIINVNNG 258 (829)
Q Consensus 240 F~-~G~~~~~~y~I~n~~~g 258 (829)
|+ +|+.. -...+..+++|
T Consensus 294 ~~~~g~~~-R~l~~~~~~~G 312 (325)
T 2h4a_A 294 ADTNCNVE-RDMTWYQYQDG 312 (325)
T ss_dssp ECTTCBEE-EECEEEEEETT
T ss_pred ECCCCeEE-EeechhhccCC
Confidence 97 89874 56777777644
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.79 E-value=4e-08 Score=104.49 Aligned_cols=215 Identities=11% Similarity=0.031 Sum_probs=144.3
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+. |.+.|+.... ...+|++.+++++|.+ ++++... +|++++..|..|++
T Consensus 3 ~~~l~iG~~--p~~~p~~~~~------------~~~~l~~~l~k~lG~~--ve~~~~~--------~~~~~i~al~~G~v 58 (310)
T 3n5l_A 3 QPVINFGII--STESSQNLKS------------IWEPFLKDMSQQTGYQ--VKAFFAP--------DYAGIIQGMRFDKV 58 (310)
T ss_dssp CCEEEEEEC--CSSCHHHHHH------------HHHHHHHHHHHHHSSE--EEEECCS--------SHHHHHHHHHTTSC
T ss_pred CcEEEEEEe--cCCCHHHHHH------------HHHHHHHHHHHHhCCC--EEEEeCC--------CHHHHHHHHHcCCC
Confidence 578999998 5555655321 1248999999999974 5555433 79999999999999
Q ss_pred cEEEec-cccccc--cceeccccccccc-----cceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhh
Q 043276 387 DAVVGD-TTIVFN--RSNYVDFTLPYTE-----SGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLE 458 (829)
Q Consensus 387 Di~~~~-~~it~~--R~~~vdft~p~~~-----~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~ 458 (829)
|+++.+ ...... |.....|..++.. ....++|++..
T Consensus 59 Di~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds------------------------------------ 102 (310)
T 3n5l_A 59 DIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS------------------------------------ 102 (310)
T ss_dssp SEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC------------------------------------
T ss_pred CEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC------------------------------------
Confidence 999754 333322 3333444433210 12356666332
Q ss_pred cccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHH
Q 043276 459 HRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLL 538 (829)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL 538 (829)
+|++++||
T Consensus 103 ------------------------------------------------------------------------~i~sl~DL 110 (310)
T 3n5l_A 103 ------------------------------------------------------------------------KIDSLEDM 110 (310)
T ss_dssp ------------------------------------------------------------------------SCCSHHHH
T ss_pred ------------------------------------------------------------------------CCCCHHHH
Confidence 27999999
Q ss_pred Hh--CCCcEEEE-eCch----HHHH-H-HhcCCCc---cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 539 IK--RGDNVGYQ-KGSF----VLGI-L-KQLGFDE---RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 539 ~~--~~~~vg~~-~~s~----~~~~-l-~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
++ .++++++. .++. ...+ | ++.+.+. .+.+...+..+.+..|..|+ +|+.+.+...+..+.++.
T Consensus 111 ~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 186 (310)
T 3n5l_A 111 LANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQ----VDVATFNTEGMERLELTQ 186 (310)
T ss_dssp HHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHC
T ss_pred hhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCC----ccEEEecchhHHHHHHhC
Confidence 54 46688863 3332 2222 2 4444432 22333456778999999999 999999988888877764
Q ss_pred C---CceEEeCcccccCCceeeecCCCC--chhhHHHHHHhhhccChhHHHHHHHc
Q 043276 607 C---SKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 607 c---~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
. ..+.++........++++++++-| +++.|+++|..+.++|...++.+++-
T Consensus 187 ~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 187 PEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp HHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred ccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 1 246666544333457899999954 99999999999999999888877763
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.73 E-value=1.7e-08 Score=100.39 Aligned_cols=182 Identities=9% Similarity=0.004 Sum_probs=134.0
Q ss_pred CceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccc------cceeccccc
Q 043276 334 ETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFN------RSNYVDFTL 407 (829)
Q Consensus 334 ~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~------R~~~vdft~ 407 (829)
..++.|+.--|.+.+. |+ ++++.... .+++.+..|.+|++|+++.+.+.+++ |...+||+.
T Consensus 27 s~~yeGlatgl~~~f~---gi--~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~ 93 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GI--PFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGP 93 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TS--CEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCT
T ss_pred hhhhhHHHHHHHHHhc---CC--cEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCC
Confidence 4578888888887773 65 44554432 58999999999999999999999999 999999999
Q ss_pred cccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhc
Q 043276 408 PYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFS 487 (829)
Q Consensus 408 p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (829)
||+.+...++++.+....
T Consensus 94 ~yYv~~h~li~~~~~~~~-------------------------------------------------------------- 111 (231)
T 2ozz_A 94 HTYVGEHQLICRKGESGN-------------------------------------------------------------- 111 (231)
T ss_dssp TSSSCCEEEEEETTCGGG--------------------------------------------------------------
T ss_pred CccccCeEEEEeCCCccc--------------------------------------------------------------
Confidence 999888888888664221
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccce
Q 043276 488 QRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKL 567 (829)
Q Consensus 488 ~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~ 567 (829)
| ++||+..||..+..+.+..+....+
T Consensus 112 --------------------------------------------i----------krVGvd~gS~dq~~lt~~~~~g~~V 137 (231)
T 2ozz_A 112 --------------------------------------------V----------KRVGLDSRSADQKIMTDVFFGDSDV 137 (231)
T ss_dssp --------------------------------------------C----------CEEEECTTCHHHHHHHHHHHTTSCC
T ss_pred --------------------------------------------c----------EEEEecCCChhHHHHHhhhcCCCeE
Confidence 2 5899999999888887643444456
Q ss_pred eec-CChHHHHHHHhcCCcCCceeEEEc--chhHHHHHHhcCCCceEE--eCc---ccccCCceeeecCCCC-chhhHHH
Q 043276 568 VVY-NSHEECDELFQKGSANGGIAAAFD--EIPYAKLLIGQHCSKYTM--VEP---TFKTAGFGFAFPLHSP-LVHDVSK 638 (829)
Q Consensus 568 ~~~-~~~~~~~~~l~~g~~~~g~~a~~~--~~~~~~~~~~~~c~~l~~--v~~---~~~~~~~~~~~~k~sp-l~~~in~ 638 (829)
..+ .+..++++.|.+|+ +||++. +.+... +..+ +.. +.. ........++++||.+ +++.+|+
T Consensus 138 e~ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~ 208 (231)
T 2ozz_A 138 ERVDLSYHESLQRIVKGD----VDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRA 208 (231)
T ss_dssp EEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHcCC----ccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHH
Confidence 677 78889999999999 999999 666554 1221 222 222 2344566789999975 8888887
Q ss_pred HHHhhhccChhHHHHHHHc
Q 043276 639 AILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 639 ~il~l~e~G~~~~~~~~w~ 657 (829)
+|. ...+..+.++-.
T Consensus 209 ~I~----~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 209 VVD----KHALLAHQQRVV 223 (231)
T ss_dssp HCC----HHHHHHHHHHHH
T ss_pred HhH----HHHHHHHHHHHH
Confidence 663 335555666665
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.68 E-value=1e-07 Score=101.70 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=143.2
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
+.++|++|+. |.+.|... ...--+|++.|++++|.+ ++++... +|++++..|..|+
T Consensus 12 ~~~~l~~Gv~--p~~~~~~~------------~~~~~~l~~~L~k~lG~~--ve~~~~~--------~~~~~i~aL~~G~ 67 (321)
T 3p7i_A 12 QEKALNFGII--STESQQNL------------KPQWTPFLQDMEKKLGVK--VNAFFAP--------DYAGIIQGMRFNK 67 (321)
T ss_dssp --CCEEEEEC--CSSCHHHH------------HHHHHHHHHHHHHHHTSC--EEEECCS--------SHHHHHHHHHTTS
T ss_pred cCCcEEEEEe--cCCCHHHH------------HHHHHHHHHHHHHHHCCC--EEEEecC--------CHHHHHHHHHcCC
Confidence 3578999998 44444332 122247999999999975 4555433 7999999999999
Q ss_pred ccEEEe-ccccccc--cceecccccccc-----ccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhh
Q 043276 386 FDAVVG-DTTIVFN--RSNYVDFTLPYT-----ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVL 457 (829)
Q Consensus 386 ~Di~~~-~~~it~~--R~~~vdft~p~~-----~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~ 457 (829)
+|+++. +.+.+.. |.....|..|+. .....++|++..
T Consensus 68 vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds----------------------------------- 112 (321)
T 3p7i_A 68 VDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS----------------------------------- 112 (321)
T ss_dssp CSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC-----------------------------------
T ss_pred CcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC-----------------------------------
Confidence 999974 3454443 333334443321 012356666332
Q ss_pred hcccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHH
Q 043276 458 EHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNL 537 (829)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~d 537 (829)
+|++++|
T Consensus 113 -------------------------------------------------------------------------~i~sl~D 119 (321)
T 3p7i_A 113 -------------------------------------------------------------------------PINNLND 119 (321)
T ss_dssp -------------------------------------------------------------------------SCCSHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 2799999
Q ss_pred HHh--CCCcEEE-EeCch----HHHH--HHhcCCCccc--eeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 538 LIK--RGDNVGY-QKGSF----VLGI--LKQLGFDERK--LVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 538 L~~--~~~~vg~-~~~s~----~~~~--l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
|++ .++++++ ..+++ .... +++.+.+... .+.+.+..+.+.+|..|+ +|+.+.+...+..+.++.
T Consensus 120 L~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~ 195 (321)
T 3p7i_A 120 LLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQ----VDVATNNTENLDKLKTSA 195 (321)
T ss_dssp HHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHC
T ss_pred HHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCC----ceEEEechHHHHHHHHhC
Confidence 943 3557885 33332 2222 2445554332 234566788999999999 999999988888777653
Q ss_pred ---CCceEEeCcccccCCceeeecCCCC--chhhHHHHHHhhhccChhHHHHHHHc
Q 043276 607 ---CSKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 607 ---c~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
...+.++........++++++|+-| +++.|+.+|..+.++|...++.+++-
T Consensus 196 p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 196 PEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp HHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred cchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 2247777654444567899999944 99999999999999998888777653
No 77
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.84 E-value=0.00018 Score=76.54 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCCHHHHHhCCCcEEEEeCchHH----HHHHhcCCCccceeecC-ChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVL----GILKQLGFDERKLVVYN-SHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
|++++|| .|++|++..|+... .+|++.+++...+..+. +..+...+|..|+ +||++...++......+.
T Consensus 123 I~s~~DL--kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~ 196 (324)
T 3ksx_A 123 LRTVADL--KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLDG 196 (324)
T ss_dssp CCSGGGG--TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHTT
T ss_pred CCCHHHh--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhcC
Confidence 7999999 49999998877543 34555666544333222 6788999999999 999888888777666553
Q ss_pred CCceEEeCcccccCCceeeecCC
Q 043276 607 CSKYTMVEPTFKTAGFGFAFPLH 629 (829)
Q Consensus 607 c~~l~~v~~~~~~~~~~~~~~k~ 629 (829)
..++......+......+++++.
T Consensus 197 ~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 197 SARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp SEEEEEESTTSCCCCEEEEEEHH
T ss_pred CcEEEecccccCCCccEEEECHH
Confidence 21222223333333344555443
No 78
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.80 E-value=0.00011 Score=79.04 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCCHHHHHhCCCcEEEEeCchHH----HHHHhcCCCccceeecC-ChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVL----GILKQLGFDERKLVVYN-SHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
|++++|| .|++||+..|+... .+|++.+++...+..+. +..+...+|..|+ +||++...+..... .+.
T Consensus 111 i~s~~DL--kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~~~-~~g 183 (348)
T 3uif_A 111 AKSIKDL--KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYILE-DRG 183 (348)
T ss_dssp CCSGGGG--TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHHHH-HTT
T ss_pred CCCHHHc--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHHHH-hcC
Confidence 7999999 59999998787653 44555666544443333 5678899999999 99988877765432 222
Q ss_pred CCceEEeCccc---ccCCceeeecCC----CC-chhhHHHHHHhh
Q 043276 607 CSKYTMVEPTF---KTAGFGFAFPLH----SP-LVHDVSKAILNV 643 (829)
Q Consensus 607 c~~l~~v~~~~---~~~~~~~~~~k~----sp-l~~~in~~il~l 643 (829)
..........+ .....+++++++ .| +...|.+++.+.
T Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 184 VGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp SEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 21121111111 123346666665 44 555555555443
No 79
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.75 E-value=0.00027 Score=74.55 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=73.0
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHH----HHHhcCCCcccee-ecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLG----ILKQLGFDERKLV-VYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~----~l~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
|++++||. |+++++..|+.... ++++.+.....+. .+.+..+...+|..|+ +||++...++..+...+.
T Consensus 97 i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 170 (308)
T 2x26_A 97 IKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG 170 (308)
T ss_dssp CCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS
T ss_pred CCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC
Confidence 68899994 88999987776544 3455566543332 3456788999999999 999988888877766553
Q ss_pred CCceEEeCc--ccccCCceeeec----CCCC-chhhHHHHHHhh----hccC-hhHHHHHHHc
Q 043276 607 CSKYTMVEP--TFKTAGFGFAFP----LHSP-LVHDVSKAILNV----TEGD-KMKEIEDAWF 657 (829)
Q Consensus 607 c~~l~~v~~--~~~~~~~~~~~~----k~sp-l~~~in~~il~l----~e~G-~~~~~~~~w~ 657 (829)
.+.++.. .+......+++. +..| +...|.+++.+. .+++ ...++..+|+
T Consensus 171 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~ 231 (308)
T 2x26_A 171 --GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTM 231 (308)
T ss_dssp --SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred --CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 2444422 221222223332 3344 777888777763 3343 3445556665
No 80
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.66 E-value=0.00013 Score=78.27 Aligned_cols=121 Identities=15% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCCHHHHHhCCCcEEEEeCchHH-----HHHHhcCCCcc--ceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHh
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVL-----GILKQLGFDER--KLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIG 604 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~-----~~l~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 604 (829)
|++++||. .|++||+..++... .+|++.+.+.. +++.+ +..+...+|..|+ +||++...++......
T Consensus 145 I~s~~DL~-kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~ 218 (341)
T 3un6_A 145 LNEFNNNG-DDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEK 218 (341)
T ss_dssp GGGCCSSS-SCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHH
T ss_pred CCCHHHhC-CCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHh
Confidence 67888982 38899998754333 24555666543 33444 4678889999999 9999988888777666
Q ss_pred cCCCceEEeCccc-ccC-CceeeecCC----CC-----chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 605 QHCSKYTMVEPTF-KTA-GFGFAFPLH----SP-----LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 605 ~~c~~l~~v~~~~-~~~-~~~~~~~k~----sp-----l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+...+.......+ ... ..+++++++ .| +...+++++..+.+++.-.++..+|++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 219 LGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp SSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred cCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 5432222222222 222 245666554 44 566667777777777643366667763
No 81
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.46 E-value=0.0014 Score=69.99 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=97.9
Q ss_pred HHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccc----cccceeccccccccccceEEEEEccCCC
Q 043276 349 IEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIV----FNRSNYVDFTLPYTESGVSMIVPIKDSK 424 (829)
Q Consensus 349 a~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it----~~R~~~vdft~p~~~~~~~~vv~~~~~~ 424 (829)
.++.|+ +++++.+. ++..++..|..|++|+++++.... .++.....+..++...+..+++++....
T Consensus 59 ~~~~g~--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (346)
T 3qsl_A 59 FKDEGL--DVSIADFA--------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP 128 (346)
T ss_dssp HHHTTC--EEEEEECS--------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT
T ss_pred hHhhCC--eEEEEecC--------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc
Confidence 356776 45555543 689999999999999998776544 4556667777777777788888754311
Q ss_pred CCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHH
Q 043276 425 KRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVW 504 (829)
Q Consensus 425 ~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w 504 (829)
T Consensus 129 -------------------------------------------------------------------------------- 128 (346)
T 3qsl_A 129 -------------------------------------------------------------------------------- 128 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEEE-eCchHH----HHHHhcCCCc--cceeecCChHHHH
Q 043276 505 CFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQ-KGSFVL----GILKQLGFDE--RKLVVYNSHEECD 577 (829)
Q Consensus 505 ~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~~-~~s~~~----~~l~~~~~~~--~~~~~~~~~~~~~ 577 (829)
+|++++|| .|+++++. .|+... .++++.+.+. .+++.+....+..
T Consensus 129 --------------------------~i~s~~DL--~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~ 180 (346)
T 3qsl_A 129 --------------------------GYKGPADL--KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAV 180 (346)
T ss_dssp --------------------------TCCSGGGG--TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHH
T ss_pred --------------------------CCCChHHc--CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHH
Confidence 27999999 58899998 576443 4445566643 3456666777899
Q ss_pred HHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 578 ELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 578 ~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
.+|..|+ +|+++...++......+.
T Consensus 181 ~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 181 TALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHcCC----ccEEEecchhHHHHHhCC
Confidence 9999999 999998888776655544
No 82
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.39 E-value=0.00053 Score=72.01 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=54.1
Q ss_pred CceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEec-ccccccc---ceeccccccc
Q 043276 334 ETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGD-TTIVFNR---SNYVDFTLPY 409 (829)
Q Consensus 334 ~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~-~~it~~R---~~~vdft~p~ 409 (829)
+..+.|+.+.+-+-+.++.|++ ++++... ....++..|..|++|+++++ ......| ...+.+..++
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFPT--------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVV 83 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECCS--------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEE
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecCC--------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEe
Confidence 3445678888888888889864 4555433 34689999999999999887 2333333 3456666677
Q ss_pred cccceEEEEEcc
Q 043276 410 TESGVSMIVPIK 421 (829)
Q Consensus 410 ~~~~~~~vv~~~ 421 (829)
...+..+++++.
T Consensus 84 ~~~~~~l~~~~~ 95 (302)
T 3ix1_A 84 RSPLNHVMFLAE 95 (302)
T ss_dssp CSCCEEEEEEGG
T ss_pred ccCCEEEEEECC
Confidence 677788888754
No 83
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.37 E-value=0.0031 Score=66.29 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCCHHHHHh------CCCcEEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 532 ITDVNLLIK------RGDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 532 I~s~~dL~~------~~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
++|++||+. ....+|.. .|+..+ .+++..+.+ ...+.|....+.+..|..|+ +|+++.....+.
T Consensus 123 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~~ 197 (312)
T 2f5x_A 123 PNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNTT 197 (312)
T ss_dssp CCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTS----SCEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCC----ccEEEechHHHH
Confidence 799999974 22366665 355433 233445553 23578999999999999999 999998877665
Q ss_pred HHHhcCCCceEEe---C--------c--ccc---------cCCceeeecCCCC--chhhHHHHHHhhhccChhHHHHHHH
Q 043276 601 LLIGQHCSKYTMV---E--------P--TFK---------TAGFGFAFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAW 656 (829)
Q Consensus 601 ~~~~~~c~~l~~v---~--------~--~~~---------~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~~w 656 (829)
.+++.. + ++.+ + + .+. ...++++.|+|-| +++.+++++.++.+++.+++..+++
T Consensus 198 ~~i~~g-~-lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 198 QQITSG-K-VKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHTT-S-SEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHcC-C-eEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 555442 1 3222 1 1 111 1135789999966 9999999999999998877665554
No 84
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.13 E-value=0.0063 Score=63.98 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=80.0
Q ss_pred CCCHHHHHhC------CCcEEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 532 ITDVNLLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 532 I~s~~dL~~~------~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
++|++||+.. ...+|.. .|+..+ .+++..+.+ ...+.|....+.+..|..|+ +|+++.....+.
T Consensus 127 ~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~ 201 (314)
T 2dvz_A 127 AKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVGGQ----IELIFDNLPSSM 201 (314)
T ss_dssp CSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHHTS----SSEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHcCC----ceEEEEcHHHHH
Confidence 7899999752 2356665 355333 233445553 23578999899999999999 999998877665
Q ss_pred HHHhcC-CCceEEeCc----------ccc---------cCCceeeecCCCC--chhhHHHHHHhhhccChhHHHHHHH
Q 043276 601 LLIGQH-CSKYTMVEP----------TFK---------TAGFGFAFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAW 656 (829)
Q Consensus 601 ~~~~~~-c~~l~~v~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~~w 656 (829)
.+++.. .+-+.+.++ .+. ...++++.|+|-| +++.+++++.++.+++.+.+..+++
T Consensus 202 ~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 202 PQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 555442 211222110 011 1235788999966 9999999999999998887766665
No 85
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.12 E-value=0.0066 Score=63.50 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=80.1
Q ss_pred CCCHHHHHhC------CCcEEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 532 ITDVNLLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 532 I~s~~dL~~~------~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
++|++||+.. ...+|.. .|+..+ .+++..+.+ ...+.|....+.+..|..|+ +|+++.....+.
T Consensus 114 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~ 188 (301)
T 2qpq_A 114 YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQ----IGLAVVTASSAI 188 (301)
T ss_dssp CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTS----SSCEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCC----ccEEEEcHHHHH
Confidence 7999999852 2356665 245433 223345553 23578999999999999999 999998876665
Q ss_pred HHHhcCCCceEEe---Cc----------ccc---------cCCceeeecCCCC--chhhHHHHHHhhhccChhHHHHHHH
Q 043276 601 LLIGQHCSKYTMV---EP----------TFK---------TAGFGFAFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAW 656 (829)
Q Consensus 601 ~~~~~~c~~l~~v---~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~~w 656 (829)
.+.+. . +++.+ ++ .+. ...++++.|+|-| +++.+++++.++.+++.+++..+++
T Consensus 189 ~~i~~-g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 189 PFIKA-G-KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHT-T-SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc-C-CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 55543 2 23332 10 011 1235788999966 9999999999999999888776665
No 86
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.66 E-value=0.0031 Score=54.34 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043276 447 FIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLT 524 (829)
Q Consensus 447 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt 524 (829)
+++.+.+++.+|+..+ +....++.+++||++.++...| + ..|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 19 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred HHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667778887643 2334578999999999999777 3 46899999999999999999999999999999886
Q ss_pred cc
Q 043276 525 VD 526 (829)
Q Consensus 525 ~~ 526 (829)
..
T Consensus 95 ~~ 96 (103)
T 2k1e_A 95 RR 96 (103)
T ss_dssp GH
T ss_pred HH
Confidence 54
No 87
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.60 E-value=0.01 Score=52.80 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 448 IFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 448 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
++.+.+++.+|+..+ ++...++.+++|+++.++...| + ..|.+..+|++.++|+++++.+.+..++.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777786532 2334578999999999999777 3 468999999999999999999999999999999865
Q ss_pred c
Q 043276 526 D 526 (829)
Q Consensus 526 ~ 526 (829)
.
T Consensus 117 ~ 117 (122)
T 2ih3_C 117 R 117 (122)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.35 E-value=0.011 Score=62.76 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=42.5
Q ss_pred CCCHHHHHhCCCcEEEE-eCchH----HHHHHhcCCCccc--eeecCChHHHHHHHhcCCcCCceeEEEcc
Q 043276 532 ITDVNLLIKRGDNVGYQ-KGSFV----LGILKQLGFDERK--LVVYNSHEECDELFQKGSANGGIAAAFDE 595 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~-~~s~~----~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 595 (829)
|++++||. ++++++. .|+.. +.+++..+.+... .+.|.+..+.+.+|..|+ +|+++..
T Consensus 138 i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~ 202 (327)
T 4ddd_A 138 ISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDV 202 (327)
T ss_dssp CCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEE
T ss_pred CCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEc
Confidence 78999995 7788884 55543 3345556665433 467889999999999999 8888764
No 89
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.24 E-value=0.023 Score=52.72 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=61.2
Q ss_pred HHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 043276 449 FIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVD 526 (829)
Q Consensus 449 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~ 526 (829)
+.+.+++.+|+..+ +....++.+++||++.++...| + ..|.+..+|++.++|+++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777776542 2333478899999999999877 3 4689999999999999999999999999999999875
Q ss_pred cC
Q 043276 527 QL 528 (829)
Q Consensus 527 ~~ 528 (829)
..
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 90
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.23 E-value=0.019 Score=60.57 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCHHHHHhCCCcEEEEe-CchHHH---HH-HhcCCCc-cceeecCChHHHHHHHhcC----CcCCceeEEEcchhHHHH
Q 043276 532 ITDVNLLIKRGDNVGYQK-GSFVLG---IL-KQLGFDE-RKLVVYNSHEECDELFQKG----SANGGIAAAFDEIPYAKL 601 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~-~s~~~~---~l-~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~~g~~a~~~~~~~~~~ 601 (829)
|++++|| ++||+.. |+.... .+ ++.+++. .+++.+.+..+...+|..| + +||++.+......
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~ 183 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKK 183 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchh
Confidence 7899999 6899976 654332 22 3455543 4566777788899999999 8 9998766444333
Q ss_pred HHhcCCCceEEeCcccccC-CceeeecCC----CC-----chhhHHHHHHhhhcc
Q 043276 602 LIGQHCSKYTMVEPTFKTA-GFGFAFPLH----SP-----LVHDVSKAILNVTEG 646 (829)
Q Consensus 602 ~~~~~c~~l~~v~~~~~~~-~~~~~~~k~----sp-----l~~~in~~il~l~e~ 646 (829)
... .. .+..+.+..... ..++++++. .| +...+.+++..+.++
T Consensus 184 ~~~-~g-~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 184 YYD-NH-EIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHH-TT-SEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcc-CC-ceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 332 22 244444332222 236666654 34 344445555555443
No 91
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=96.06 E-value=0.047 Score=53.26 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++||||+. +.+. ..+-.+++..+.++.+ .+++++.. ++...++.+|.+|+
T Consensus 6 ~~g~l~Ig~~--~~~~----------------~~~l~~~l~~f~~~~P-~i~i~i~~---------~~~~~~~~~l~~g~ 57 (222)
T 4ab5_A 6 EAGELRIAVE--CHTC----------------FDWLMPAMGEFRPMWP-QVELDIVS---------GFQADPVGLLLQHR 57 (222)
T ss_dssp TTEEEEEECC--CTTT----------------HHHHHHHHHHHHHHST-TEEEEEEC---------CCCSCTHHHHHTTS
T ss_pred ccceEEEEEe--hHHH----------------HHHHHHHHHHHHHHCC-CcEEEEec---------CCHHHHHHHHHcCC
Confidence 4678999987 2221 2345678888888887 45666654 24578899999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKD 422 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~ 422 (829)
+|+++........ .+. ..++....++++++...
T Consensus 58 ~Di~i~~~~~~~~---~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 58 ADLAIVSEAEKQN---GIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CSEEEESCCCCCT---TEE-EEEEEEEEEEEEECTTS
T ss_pred cCEEEecCCCCcC---CeE-EEEeecCcEEEEecCCC
Confidence 9999875432222 222 46778888888888543
No 92
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.93 E-value=0.023 Score=51.76 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043276 449 FIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLT 524 (829)
Q Consensus 449 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt 524 (829)
+.+.+++.+|+.. .+....++.+++||++.++...| ...|.+..+|++.++|+++++.+.+...+.+++.+.
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666643 22334578899999999998776 347899999999999999999999999999998873
No 93
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.82 E-value=0.031 Score=61.45 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=62.6
Q ss_pred HHHHhCCCcEEEE-eCchHHH----HHHhcCCCc---cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCC
Q 043276 536 NLLIKRGDNVGYQ-KGSFVLG----ILKQLGFDE---RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHC 607 (829)
Q Consensus 536 ~dL~~~~~~vg~~-~~s~~~~----~l~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c 607 (829)
+|| .|++||+. .++.... +|++.+++. .+++.+ ...+...+|..|+ +|+++...++......+..
T Consensus 151 ~dL--kGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKV--TDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTS--SSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTS
T ss_pred Hhc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCC
Confidence 677 48899997 4665433 345556653 345555 4578899999999 9999988877766655543
Q ss_pred CceEEe-CcccccCC-ceeeecCC----CC-----chhhHHHHHHhhhc
Q 043276 608 SKYTMV-EPTFKTAG-FGFAFPLH----SP-----LVHDVSKAILNVTE 645 (829)
Q Consensus 608 ~~l~~v-~~~~~~~~-~~~~~~k~----sp-----l~~~in~~il~l~e 645 (829)
...... .+.....+ .++++++. .| +...+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 222222 23222223 46777654 34 44456666666665
No 94
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.66 E-value=0.049 Score=49.37 Aligned_cols=57 Identities=11% Similarity=0.271 Sum_probs=50.0
Q ss_pred CccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQ 527 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~ 527 (829)
.++.+++|+++.++...| + -.|.+..+|++.++|+++++.+.+...+.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999777 3 47899999999999999999999999999999886543
No 95
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.65 E-value=0.039 Score=54.39 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=58.2
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..++++||+. +.+ ...+-.+++..+.++.+ .+++++.. ++...++.+|.+|+
T Consensus 9 ~~g~l~Ig~~--~~~----------------~~~~l~~~l~~~~~~~P-~v~i~~~~---------~~~~~~~~~l~~g~ 60 (232)
T 3ho7_A 9 LTGRLNIAVL--PTI----------------APYLLPRVFPIWKKELA-GLEIHVSE---------MQTSRCLASLLSGE 60 (232)
T ss_dssp -CEEEEEEEC--TTT----------------HHHHHHHHHHHHHHHST-TEEEEEEE---------CCHHHHHHHHHHTS
T ss_pred cceeEEEEec--ccc----------------chhhhHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCC
Confidence 3567899887 221 12355778888988887 46666654 35789999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
+|+++....... ..+. +.++....++++++..
T Consensus 61 ~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 92 (232)
T 3ho7_A 61 IDMAIIASKAET---EGLE-DDLLYYEEFLGYVSRC 92 (232)
T ss_dssp CSEEEESSCCCC---TTEE-EEEEEEEEEEEEECTT
T ss_pred CCEEEEcCCCCC---CCeE-EEEecccCEEEEEcCC
Confidence 999996544332 2222 4677888888888854
No 96
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.47 E-value=0.23 Score=49.10 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
...+.||||+. +.+ ...+-..++..+.++.+ ++++++... +...++.+|.+|
T Consensus 16 ~~~g~l~Ig~~--~~~----------------~~~~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g 67 (241)
T 3oxn_A 16 QCDQTFTIATT--DYA----------------MQTILPFALPRIYQEAP-NVSFNFLPL---------QHDRLSDQLTYE 67 (241)
T ss_dssp SCCCEEEEEEC--SHH----------------HHHTHHHHHHHHHHHCT-TCEEEEEEC---------CGGGHHHHHHTS
T ss_pred cCCceEEEEec--hHH----------------HHHHHHHHHHHHHHHCC-CCEEEEEEC---------CcccHHHHHHcC
Confidence 34678999987 221 12355688899998887 466666652 568999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEccC
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKD 422 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~ 422 (829)
++|++++..... ...+. ..++....++++++...
T Consensus 68 ~~Dl~i~~~~~~---~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 68 GADLAICRPTGP---VEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CCSEEEECCSSC---CTTEE-EEEEECCCEEEEEETTS
T ss_pred CCCEEEecCCCC---Cccce-eEEeecccEEEEEeCCC
Confidence 999998743322 22232 46788889999998553
No 97
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=94.97 E-value=0.15 Score=41.52 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 043276 472 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLL 523 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~L 523 (829)
++.+++|+++.++...| + ..|.+..+|++.+.|.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999877 3 4689999999999999999999999999998876
No 98
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.97 E-value=0.077 Score=54.54 Aligned_cols=99 Identities=10% Similarity=-0.088 Sum_probs=56.5
Q ss_pred HHHHhCCCcEEEE-eCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcc-hhHHHHHHhcCCCceEEe
Q 043276 536 NLLIKRGDNVGYQ-KGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDE-IPYAKLLIGQHCSKYTMV 613 (829)
Q Consensus 536 ~dL~~~~~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~-~~~~~~~~~~~c~~l~~v 613 (829)
+|| .|++||+. .++....+++.. ....+++ +.+..+...+|.+|+ +||++.. .+... +.+.. +..+
T Consensus 99 ~DL--kGK~Iav~~~~s~~~~ll~~~-l~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~g---~~~~ 166 (280)
T 1zbm_A 99 ISL--DGKRIAVPGRYTTANLLLKLA-VEDFEPV-EMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADYG---LKCV 166 (280)
T ss_dssp CCC--TTCEEEESCTTSHHHHHHHHH-CSSCEEE-ECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGGT---CEEE
T ss_pred hhc--CCCEEEecCCCcHHHHHHHHH-hccCceE-ecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhcC---CeEe
Confidence 567 58899996 445444335442 2333443 346678899999999 9988743 34433 22221 2222
Q ss_pred Cc---c----c--ccCCceeeecCC-CC-chhhHHHHHHhhhcc
Q 043276 614 EP---T----F--KTAGFGFAFPLH-SP-LVHDVSKAILNVTEG 646 (829)
Q Consensus 614 ~~---~----~--~~~~~~~~~~k~-sp-l~~~in~~il~l~e~ 646 (829)
.. . . .....+++++++ .| +...|.+++.+..+.
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 11 0 0 011236778888 56 777877777766544
No 99
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=94.57 E-value=0.44 Score=46.42 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=49.7
Q ss_pred EeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEE
Q 043276 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418 (829)
Q Consensus 339 G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv 418 (829)
.+-..++..+.++.+ .+++++.. ++...++.+|.+|++|++++..... ...+.+ .|+....+++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~---------~~~~~l~~~L~~g~iDl~i~~~~~~---~~~l~~-~~l~~~~~~~v~ 86 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLR---------PNAGNLKEDMESGAVDLALGLLPEL---QTGFFQ-RRLFRHRYVCMF 86 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC---------CCTTTHHHHHHHTSSCEEEECCTTC---CTTEEE-EEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEe---------CCcccHHHHHhCCCceEEEecCCCC---CcceeE-EEeeeccEEEEE
Confidence 355678888888887 46676654 2568899999999999998643221 122333 578888999999
Q ss_pred EccC
Q 043276 419 PIKD 422 (829)
Q Consensus 419 ~~~~ 422 (829)
+...
T Consensus 87 ~~~h 90 (218)
T 2y7p_A 87 RKDH 90 (218)
T ss_dssp ETTC
T ss_pred cCCC
Confidence 8553
No 100
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=94.38 E-value=0.55 Score=48.49 Aligned_cols=83 Identities=7% Similarity=0.054 Sum_probs=54.9
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.+|||++ +.+ ...+-.+++..+.++.+ .+++++... +..+++..|.+|++
T Consensus 100 ~~~l~Ig~~--~~~----------------~~~~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~ 151 (310)
T 2esn_A 100 QRTFVFAAT--DYT----------------AFALLPPLMNRLQHSAP-GVRLRLVNA---------ERKLSVEALASGRI 151 (310)
T ss_dssp CCEEEEECC--HHH----------------HHHHHHHHHHHHHHHST-TCEEEEECC---------SSSCCHHHHHHTSS
T ss_pred CceEEEEeC--hHH----------------HHHHHHHHHHHHHHHCC-CeEEEEEeC---------CcccHHHHHHcCCC
Confidence 568999987 221 12345678888888887 466666542 34567889999999
Q ss_pred cEEEec---cccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGD---TTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~---~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|+++.. ..... ..+. ..|+....++++++..
T Consensus 152 Dl~i~~~~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 185 (310)
T 2esn_A 152 DFALGYDEEHERLP---EGIQ-AHDWFADRYVVVARRD 185 (310)
T ss_dssp SEEEECCSTTCCCC---TTEE-EEEEEEECEEEEEESS
T ss_pred CEEEecCcccccCC---cCcc-eeeeeccceEEEEeCC
Confidence 999864 22211 1222 3577788888888844
No 101
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=94.32 E-value=0.17 Score=42.72 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=50.6
Q ss_pred CccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQL 528 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~ 528 (829)
.++.+++||++.++...| + ..|.+..+|++.++|.++++.+.+...+.+++.++.+..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 368899999999999877 3 468999999999999999999999999999998876543
No 102
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=94.31 E-value=0.21 Score=48.21 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=48.8
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-.+++..+.++.+ ++++++... +...++.+|.+|++|+++........ .+. ..++....++++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~~---~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEEN---------YTHTLTESLKRGDVDAIIVAEPFQEP---GIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEEE---------CHHHHHHHHHHTSSSEEEEESSCCCT---TEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcHHHHHHHHcCCCCEEEEcCCCCCC---Cee-EEEeeeceEEEEEe
Confidence 45678888888876 466766553 56889999999999999865433222 222 46777888888888
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 84 ~~ 85 (219)
T 3jv9_A 84 KG 85 (219)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 103
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.17 E-value=0.42 Score=51.15 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHH
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYA 599 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 599 (829)
.+|++++|| +|+++.+. +......++..+... +.+ ...|...+|.+|. +|+.....+..
T Consensus 164 ~pI~s~~DL--kG~kirv~-~~~~~~~~~~lGa~p---v~~-~~~e~~~ALq~G~----VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDF--KGVKLRVP-GGMIAEVFAAAGAST---VLL-PGGEVYPALERGV----IDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGG--TTCEEECC-SHHHHHHHHHTTCEE---ECC-CGGGHHHHHHTTS----CSEEECSCHHH
T ss_pred CCcCChHHh--CCCEEeec-CHHHHHHHHHcCCee---eec-ChHHHHHHHHcCC----cceeecCCcch
Confidence 469999999 59999887 555667778776532 233 5678899999999 99998766655
No 104
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.13 E-value=0.22 Score=43.42 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=48.3
Q ss_pred ccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 043276 472 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVD 526 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~ 526 (829)
++.+++|+++.++...| ...|.+..+|++.++|.++++.+.+...+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999777 34688999999999999999999999999999988554
No 105
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.10 E-value=0.18 Score=52.56 Aligned_cols=58 Identities=28% Similarity=0.221 Sum_probs=40.7
Q ss_pred CCCHHHHHhCCCcEEE-EeCchHH----HHHHhcCCCccce--eecCChHHHHHHHhcCCcCCceeEEEcc
Q 043276 532 ITDVNLLIKRGDNVGY-QKGSFVL----GILKQLGFDERKL--VVYNSHEECDELFQKGSANGGIAAAFDE 595 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~-~~~s~~~----~~l~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 595 (829)
+++++||. ++++++ ..|+..+ .+++..+.+...+ ..+.+..+.+.+|..|+ +|+.+..
T Consensus 123 i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~ 187 (314)
T 1us5_A 123 IRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYT 187 (314)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEE
T ss_pred CCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEc
Confidence 68899996 678887 4566433 3455566654433 35667888999999999 8888754
No 106
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.03 E-value=0.5 Score=48.60 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.++||++ +.+ ...+-.+++..+.++.+ .+++++... +...++..|.+|++
T Consensus 94 ~g~l~i~~~--~~~----------------~~~~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~ 145 (306)
T 3fzv_A 94 AGQIDIGCF--ETV----------------APLYLPGLIAGFRQAYP-GVEIRIRDG---------EQQELVQGLTSGRF 145 (306)
T ss_dssp CEEEEEEEE--GGG----------------HHHHHHHHHHHHHHHCT-TEEEEEEEE---------CHHHHHHHHHHTSC
T ss_pred CceEEEEec--hhh----------------hHHHHHHHHHHHHHHCC-CeEEEEEeC---------CHHHHHHHHHCCCc
Confidence 578999987 221 12345678888988887 466666552 57889999999999
Q ss_pred cEEEeccccccccceecccccccc-ccceEEEEEccC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYT-ESGVSMIVPIKD 422 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~-~~~~~~vv~~~~ 422 (829)
|+++........ .+. ..|+. ....+++++...
T Consensus 146 Dl~i~~~~~~~~---~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 146 DLAFLYEHDLDS---TIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SEEEECSSSCCT---TEE-EEESSCCBCCEEEEETTC
T ss_pred cEEEEecccccc---ccc-eeeeeeccccEEEecCCC
Confidence 999864322222 222 34565 677777877543
No 107
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=93.81 E-value=0.69 Score=45.20 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=56.7
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+++|||++ +.+ ...+-.+++..+.++.+ .+++++.. ++...++..|.+|++
T Consensus 13 ~g~lrIg~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~ 64 (228)
T 2fyi_A 13 SGVLTIATT--HTQ----------------ARYSLPEVIKAFRELFP-EVRLELIQ---------GTPQEIATLLQNGEA 64 (228)
T ss_dssp CEEEEEEEC--HHH----------------HHHTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSC
T ss_pred cceEEEeec--cch----------------HHHHHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCc
Confidence 577999987 211 12345678889999887 46776655 357899999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|++++...... ...+. ..++....++++++..
T Consensus 65 Dl~i~~~~~~~--~~~l~-~~~l~~~~~~~v~~~~ 96 (228)
T 2fyi_A 65 DIGIASERLSN--DPQLV-AFPWFRWHHSLLVPHD 96 (228)
T ss_dssp SEEEESSSSTT--CTTEE-EEEEEEECEEEEEETT
T ss_pred cEEEEecccCC--CCCce-EEEeeecceEEEecCC
Confidence 99986422111 11222 3577888888888844
No 108
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=93.78 E-value=0.21 Score=52.29 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=53.2
Q ss_pred CccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 043276 468 PARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQ 529 (829)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~ 529 (829)
....++..++||++.++...| + ..|.+..+|++.+++.++++++.+.-++.+.+.++.+...
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578899999999999776 3 4688999999999999999999999999999999877643
No 109
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=93.68 E-value=0.31 Score=50.45 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred CccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 043276 468 PARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQ 527 (829)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~ 527 (829)
....++..++||++.++...| + -.|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345678899999999999776 3 46899999999999999999999999999999997654
No 110
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=93.66 E-value=0.61 Score=44.68 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=56.4
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..+++|||++ +.+. ..+-.+++..+.++.+ .+++++.. ++...++.+|.+|+
T Consensus 3 ~~g~l~Ig~~--~~~~----------------~~~l~~~l~~f~~~~P-~i~i~l~~---------~~~~~l~~~l~~g~ 54 (209)
T 2ql3_A 3 VAGPIAVGCY--PALG----------------PTILPSMLYAFTAEYP-RASVEFRE---------DTQNRLRTQLEGGE 54 (209)
T ss_dssp CCEEEEEEEC--GGGT----------------TTTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHTTS
T ss_pred cceeEEEeec--hhhh----------------hhhHHHHHHHHHHHCC-CceEEEEE---------CcHHHHHHHHHcCC
Confidence 3567999987 2211 1345678889999887 46666655 25788999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
+|+++....... ..+. +.++....++++++..
T Consensus 55 ~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 86 (209)
T 2ql3_A 55 LDVAIVYDLDLS---PEWQ-TVPLMTREPMVVLGAE 86 (209)
T ss_dssp CSEEEEESSSCC---TTEE-EEEEEEECCEEEEETT
T ss_pred ccEEEEecCCCC---CCce-EEEeecCceEEEEeCC
Confidence 999985432111 1222 3577788888888843
No 111
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=93.52 E-value=0.76 Score=45.11 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=48.1
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-..++..+.++.+ .+++++... +...++.+|.+|++|+++...... ...+. +.++....++++++
T Consensus 44 ~l~~~l~~f~~~~P-~v~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~ 109 (238)
T 2hxr_A 44 FIGPLMADFYARYP-SITLQLQEM---------SQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESLALVVA 109 (238)
T ss_dssp THHHHHHHHHHHCT-TSCEEEEEC---------CHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CcEEEEEEC---------CHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcEEEEEc
Confidence 45678888888887 467776652 568899999999999998643221 12222 35778888888888
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 110 ~~ 111 (238)
T 2hxr_A 110 QH 111 (238)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 112
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=93.28 E-value=0.4 Score=50.81 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=43.2
Q ss_pred CCCHHHHHhCCCcEEEEeCc---hHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHH
Q 043276 532 ITDVNLLIKRGDNVGYQKGS---FVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKL 601 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s---~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~ 601 (829)
+++++|| .|+++|+..+. ....+|++.+.+...+..+....+...++..|+ +||.+.-.++...
T Consensus 103 ~~~~~dL--kGK~ig~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~~ 169 (342)
T 4esw_A 103 TSDFQSL--KGKRIGYVGEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQV 169 (342)
T ss_dssp CSSGGGG--TTCEEEESSSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHHH
T ss_pred cCCHHHh--CCCEEEecCCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchHH
Confidence 5789999 59999985332 223445667777666555554456678899999 9988876655444
No 113
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.12 E-value=1 Score=46.63 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceecc-ccccccc
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVD-FTLPYTE 411 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vd-ft~p~~~ 411 (829)
-.+.+.+.++.|-+++++..+.+.- |+-..++++|..|.+|++..+......+...+. |+.||..
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~L-----g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~ 86 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTL-----LKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLA 86 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSS-----SCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTS
T ss_pred HHHHHHHHHHcCCeEEEEEccchhh-----CChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCccc
Confidence 3567788888888777776554321 466899999999999999876655544433222 4566654
No 114
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=93.05 E-value=0.85 Score=48.79 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccc--ccccc
Q 043276 343 DVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDF--TLPYT 410 (829)
Q Consensus 343 dll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdf--t~p~~ 410 (829)
.+.+.+.++.|-+++++..+.+. -|+..++++.|..|.+|++..+......+...+.+ ..||.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~-----Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~~~lPf~ 117 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGE-----LVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFS 117 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTT-----SSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTTC
T ss_pred HHHHHHHHhcCCeEEEEEecCCc-----ccCHHHHHHHHHcCccceeecchhhhcccChhHhhhhcCCCC
Confidence 46677888888777777665432 25789999999999999998766555544433332 35654
No 115
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=92.98 E-value=0.5 Score=51.86 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHHH-HhCCC--cEEEE-eCchHH----HHHHhcCCCc---cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHH
Q 043276 535 VNLL-IKRGD--NVGYQ-KGSFVL----GILKQLGFDE---RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLI 603 (829)
Q Consensus 535 ~~dL-~~~~~--~vg~~-~~s~~~----~~l~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 603 (829)
++|| ...|+ ++|+. .++... .+|++.+++. .+++.+ ...+...+|..|+ +||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHH
Confidence 6888 64577 89997 566543 3455566654 344444 5678899999999 999998888776655
Q ss_pred hcCCCceEE-eCccccc-CCceeeecCC----CC-----chhhHHHHHHhhhc
Q 043276 604 GQHCSKYTM-VEPTFKT-AGFGFAFPLH----SP-----LVHDVSKAILNVTE 645 (829)
Q Consensus 604 ~~~c~~l~~-v~~~~~~-~~~~~~~~k~----sp-----l~~~in~~il~l~e 645 (829)
.+....... .++.... ....+++++. .| ++..+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 554321211 1222222 2345666644 34 44445555555554
No 116
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=92.71 E-value=1.1 Score=46.50 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcch
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEI 596 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~ 596 (829)
.+|++++|| +|+++.+. ++.....++.++.. .+.. ...|...+|.+|. +|+.....
T Consensus 128 ~pI~s~~Dl--kG~KiR~~-~~~~~~~~~~lGa~---pv~~-~~~E~y~ALq~G~----vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDM--KGLKWRAY-SPVTAKIAELVGAQ---PVTV-QQAELAQAMATGV----IDSYMSSG 183 (301)
T ss_dssp SCCSSGGGG--TTCEEEES-SHHHHHHHHHHTCE---EEEC-CGGGHHHHHHTTS----CSEEEECH
T ss_pred CCCCChHHh--cCCEEecC-ChhHHHHHHHcCCc---ceec-CHHHHHHHHhcCe----eeEEecCc
Confidence 469999999 59999886 66666778877753 2332 5678999999999 99985443
No 117
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=92.54 E-value=0.49 Score=46.69 Aligned_cols=73 Identities=8% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 449 FIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 449 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
+.+.+++.+|+..+ ++...++.+++|+++.++...| + ..|.+..+|++.++++++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665321 2233578899999999999776 3 468999999999999999999999999999998864
No 118
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.47 E-value=0.52 Score=53.84 Aligned_cols=121 Identities=7% Similarity=0.072 Sum_probs=69.7
Q ss_pred CccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHH-HHHHhhc----ccCCCC-CCCH-HHHHhC
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTAS-LTSLLTV----DQLQPT-ITDV-NLLIKR 541 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~-L~s~Lt~----~~~~~~-I~s~-~dL~~~ 541 (829)
.++.+++||++.++...| + ..|.+..+|++.++|.++++.+.+...+. ++++++. ...... .... +.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 126 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--- 126 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Confidence 368899999999999777 3 35788999999999999999888877776 4444432 221111 1111 122
Q ss_pred CCcEEEEe-CchHHHHHHhcCCCccceeecCChHHHHHHHhcC-CcCCceeEEEcchhH
Q 043276 542 GDNVGYQK-GSFVLGILKQLGFDERKLVVYNSHEECDELFQKG-SANGGIAAAFDEIPY 598 (829)
Q Consensus 542 ~~~vg~~~-~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~g~~a~~~~~~~ 598 (829)
...+.+.. |.......+.+......++.++..++..+.+... . +.++..+...
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~----~~~i~Gd~~~ 181 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEG----FKVVYGSPTD 181 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCS----SEEEESCTTC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC----CeEEEeCCCC
Confidence 12343332 3333333333322233455566555666655544 3 5555555433
No 119
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=92.45 E-value=0.78 Score=44.28 Aligned_cols=104 Identities=11% Similarity=-0.009 Sum_probs=59.5
Q ss_pred CCHHHHHhCCCcEEEEeCchHHHHHHhcCCCc----cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCC
Q 043276 533 TDVNLLIKRGDNVGYQKGSFVLGILKQLGFDE----RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCS 608 (829)
Q Consensus 533 ~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~ 608 (829)
-+++||.+.. -+....+.....++.+.+... .....+++.+...+++..|. .-+++-+.....+......
T Consensus 96 ~~~~~L~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~~~~~~l- 169 (219)
T 3kos_A 96 QTPADILKFP-LLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTHLLSSERI- 169 (219)
T ss_dssp SSGGGGGGSC-EEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHHHHHTTSS-
T ss_pred CCHHHHhcCc-eeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHHHHHcCCe-
Confidence 4578886332 344445566666666543322 23356788899999999998 5566655444433322222
Q ss_pred ceEEeCcccccCCceeeecCCCCchhhHHHHHHhh
Q 043276 609 KYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNV 643 (829)
Q Consensus 609 ~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l 643 (829)
.....+......++++.+++.+....+...+..+
T Consensus 170 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 170 -VQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp -BCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred -eccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 1122223334567888888877666665555444
No 120
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=92.12 E-value=1.6 Score=45.40 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=120.8
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.+|||++ +.+ ...+-..++..+.++.+ .+++++.. ++.+.++..|.+|++
T Consensus 92 ~g~l~I~~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~ 143 (324)
T 1al3_A 92 KGSLYVATT--HTQ----------------ARYALPGVIKGFIERYP-RVSLHMHQ---------GSPTQIAEAVSKGNA 143 (324)
T ss_dssp EEEEEEEEC--HHH----------------HHHTSHHHHHHHHHHCT-EEEEEEEE---------CCHHHHHHHHHTTCC
T ss_pred CCeEEEEec--hhh----------------hhhHHHHHHHHHHHHCC-CCEEEEEE---------CCHHHHHHHHHCCCc
Confidence 567999987 221 12345678888988887 45666654 256889999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|+++...... ....+. +.|+....++++++......
T Consensus 144 Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~~~~~pl~----------------------------------------- 179 (324)
T 1al3_A 144 DFAIATEALH--LYDDLV-MLPCYHWNRSIVVTPEHPLA----------------------------------------- 179 (324)
T ss_dssp SEEEESSCCC--TTSCEE-EEEEEEECEEEEECTTSTTT-----------------------------------------
T ss_pred eEEEEecCCC--CCCCee-EEEecCCceEEEEcCCCccc-----------------------------------------
Confidence 9998642221 111222 35677778888887443211
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEE
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVG 546 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg 546 (829)
....-+++||. +.++.
T Consensus 180 --------------------------------------------------------------~~~~~~~~dL~--~~~~i 195 (324)
T 1al3_A 180 --------------------------------------------------------------TKGSVSIEELA--QYPLV 195 (324)
T ss_dssp --------------------------------------------------------------TTSCCCHHHHH--TSEEE
T ss_pred --------------------------------------------------------------cCCCCCHHHHh--CCCeE
Confidence 00134689996 44443
Q ss_pred -EEeCch----HHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeC--ccccc
Q 043276 547 -YQKGSF----VLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVE--PTFKT 619 (829)
Q Consensus 547 -~~~~s~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~--~~~~~ 619 (829)
+..++. ...++...+.........++.+...+++..|. .-+++..... .... .. .+..++ .....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~G~----Giailp~~~~-~~~~--~~-~L~~~~~~~~~~~ 267 (324)
T 1al3_A 196 TYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGL----GVGVIASMAV-DPVS--DP-DLVKLDANGIFSH 267 (324)
T ss_dssp EECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTS----CEEEEEGGGC-CTTT--CT-TSEEEECBTTBCC
T ss_pred EecCCCcHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHhCC----CeEEechhhh-hhhc--cC-CeEEEECCCCCcc
Confidence 333332 23445555565444556788888899999987 4555544321 1111 12 244442 22334
Q ss_pred CCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHc
Q 043276 620 AGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF 657 (829)
Q Consensus 620 ~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~ 657 (829)
..++++.+++.++...+...+..+.+. .-..+.++++
T Consensus 268 ~~~~l~~~~~~~~~~~~~~fi~~l~~~-~~~~~~~~~~ 304 (324)
T 1al3_A 268 STTKIGFRRSTFLRSYMYDFIQRFAPH-LTRDVVDTAV 304 (324)
T ss_dssp EEEEEEEETTCCCCHHHHHHHHHHCTT-CCHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHH-hccchhhhhh
Confidence 567888888877777776666666554 2344555554
No 121
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=92.04 E-value=0.53 Score=43.11 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=45.9
Q ss_pred CccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLL 523 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~L 523 (829)
.++.+++||++.++...| + ..|.+..+|++.++|.++++.+.+...+++++.+
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999877 3 4688999999999999999999998888887654
No 122
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=91.76 E-value=0.85 Score=44.38 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc-ccEEEecccccccc---ceecc--ccccccccceE
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE-FDAVVGDTTIVFNR---SNYVD--FTLPYTESGVS 415 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~-~Di~~~~~~it~~R---~~~vd--ft~p~~~~~~~ 415 (829)
-++++.+.++-|.+ +++.. ++-..++.+|.+|+ +|+++..-....++ ...+. -..|+....++
T Consensus 15 ~~~~~~F~~~p~i~--v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 15 EQLAGQFAKQTGHA--VVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHCCC--EEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHhccCCe--EEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 45777777775554 44433 24578999999998 99987632211111 11111 24678888888
Q ss_pred EEEEcc
Q 043276 416 MIVPIK 421 (829)
Q Consensus 416 ~vv~~~ 421 (829)
++++..
T Consensus 84 lv~~~~ 89 (231)
T 1atg_A 84 LWSAKP 89 (231)
T ss_dssp EEESST
T ss_pred EEEcCC
Confidence 888854
No 123
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.55 E-value=2 Score=44.00 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-..++..+.++.+ .+++++... ..++++..|.+|++|+++........ ...+ -..|+....++++++
T Consensus 106 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~~-~~~l-~~~~L~~~~~~~v~~ 173 (305)
T 3fxq_A 106 ALPLALASFAREFP-DVTVNVRDG---------MYPAVSPQLRDGTLDFALTAAHKHDI-DTDL-EAQPLYVSDVVIVGQ 173 (305)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEEC---------CTTTTHHHHHHTSSSEEEEECCGGGS-CTTE-EEEEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEEC---------CHHHHHHHHHcCCCCEEEecCCCCCC-ccCe-eEEEeecCcEEEEEc
Confidence 45678888988887 467776652 45778999999999999864332210 1112 246788888899988
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 174 ~~ 175 (305)
T 3fxq_A 174 RQ 175 (305)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 124
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=91.25 E-value=1.3 Score=45.85 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=46.2
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-..++..+.++.+ .+++++... +..+++..|.+|++|+++....... ..+. ..|+....++++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLPELQ---TGFF-QRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECT---------TSSCHHHHHHHTSCCEEEECCTTCC---TTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcccHHHHHHCCCCCEEEecCCCCC---CCce-EEEeeccceEEEEe
Confidence 44577888888887 466665542 4578899999999999986433211 1222 35777888888887
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 185 ~~ 186 (315)
T 1uth_A 185 KD 186 (315)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 125
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=90.99 E-value=0.23 Score=48.41 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=57.0
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||++ +.+ ...+-.+++..+.++.+ .+++++.. ++...++.+|.+|++
T Consensus 4 ~g~lrIg~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~ 55 (219)
T 1i6a_A 4 SGPLHIGLI--PTV----------------GPYLLPHIIPMLHQTFP-KLEMYLHE---------AQTHQLLAQLDSGKL 55 (219)
T ss_dssp CEEEEEEEC--TTT----------------HHHHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSC
T ss_pred ceEEEEEec--cch----------------hhhhhhHHHHHHHHHCC-CeEEEEEE---------CChHHHHHHHHcCCe
Confidence 567899987 221 12355678888999887 46666654 357899999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|+++...... ...+. +.|+....++++++..
T Consensus 56 Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 86 (219)
T 1i6a_A 56 DAVILALVKE---SEAFI-EVPLFDEPMLLAIYED 86 (219)
T ss_dssp SEEEEECCGG---GTTSE-EEEEEEEEEEEEEETT
T ss_pred eEEEecCCCC---CCCcc-eeeeecccEEEEEcCC
Confidence 9998643221 12222 3578888888888854
No 126
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=90.44 E-value=3.6 Score=41.22 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc-ccEEEecccccccc---ceecc--ccccccccceE
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE-FDAVVGDTTIVFNR---SNYVD--FTLPYTESGVS 415 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~-~Di~~~~~~it~~R---~~~vd--ft~p~~~~~~~ 415 (829)
-+|++.+.++.|.++++.+- .-..++.++.+|. +|+.++.-.-..++ ...++ -..+|....++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~-----------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lv 106 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA-----------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLV 106 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE-----------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEE
T ss_pred HHHHHHHHHHhCCeEEEEEC-----------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEE
Confidence 45777777777766555432 3467888898887 99998743211111 12221 23567778899
Q ss_pred EEEEccC
Q 043276 416 MIVPIKD 422 (829)
Q Consensus 416 ~vv~~~~ 422 (829)
+++++..
T Consensus 107 l~~~~~~ 113 (253)
T 3gzg_A 107 LVAPASS 113 (253)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9998654
No 127
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=90.23 E-value=0.013 Score=55.25 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=55.7
Q ss_pred HHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 451 GFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 451 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
++++|.++... .++...++.+++||++.++...| ...|.+..+|++.++|+++++++.+...+.+++.++.
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 23344578899999999998777 3478999999999999999999999999999998864
No 128
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=90.15 E-value=0.58 Score=49.87 Aligned_cols=74 Identities=9% Similarity=0.158 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 448 IFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 448 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
++.+++.+.+++..+++ ...++.+++|+++.++...| + -.|.+..+|++.++++++++++.+...+.+++.+..
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777643221 12367899999999999776 3 468899999999999999999999999999988754
No 129
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=90.12 E-value=2.2 Score=43.37 Aligned_cols=83 Identities=7% Similarity=0.025 Sum_probs=56.4
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.+|||++ +.+. ..+-.+++..+.++.+ .+++++... +...++.+|.+|++
T Consensus 90 ~g~l~Ig~~--~~~~----------------~~~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g~~ 141 (294)
T 1ixc_A 90 VGELSVAYF--GTPI----------------YRSLPLLLRAFLTSTP-TATVSLTHM---------TKDEQVEGLLAGTI 141 (294)
T ss_dssp CEEEEEEEC--SGGG----------------GTHHHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTSC
T ss_pred CceEEEEEc--cchh----------------HHHHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHCCCc
Confidence 567999987 2211 2345678888888887 466666552 46789999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|+++....... ..+. ..|+....++++++..
T Consensus 142 Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 172 (294)
T 1ixc_A 142 HVGFSRFFPRH---PGIE-IVNIAQEDLYLAVHRS 172 (294)
T ss_dssp SEEEESCCCCC---TTEE-EEEEEEEEEEEEEEGG
T ss_pred cEEEEecCCCC---CCce-EEEEeeccEEEEEeCC
Confidence 99986443221 2222 3577788888888844
No 130
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=90.12 E-value=1.5 Score=45.77 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=50.9
Q ss_pred ccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 043276 472 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQL 528 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~ 528 (829)
++.+++||++.++...| ...|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999776 3468999999999999999999999999999999987654
No 131
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=89.43 E-value=10 Score=37.35 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=61.5
Q ss_pred CCCHHHHHhCCCcEEEEeC------chHHHHHHhcCCC---ccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHH
Q 043276 532 ITDVNLLIKRGDNVGYQKG------SFVLGILKQLGFD---ERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLL 602 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~------s~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 602 (829)
++++.||.+ +.++++... .+....|++.++- ..+++...+..+....+..|+ +++.+.....+.
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge----~d~gi~~~s~a~-- 179 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNE----APLGIVYGSDAV-- 179 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHH--
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCC----CCEEEEEecccc--
Confidence 356777764 457777543 2345566655431 224556677888899999999 777766543322
Q ss_pred HhcCCCceEE---eCccc-ccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHH
Q 043276 603 IGQHCSKYTM---VEPTF-KTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAW 656 (829)
Q Consensus 603 ~~~~c~~l~~---v~~~~-~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w 656 (829)
.. +++.+ +++.. ....+.+++.|+++- +.-.+.+ .+..+..-+++..++
T Consensus 180 -~~--~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi-~fl~S~eaq~i~~~~ 232 (237)
T 3r26_A 180 -AS--KGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFY-DYLKGPQAAEIFKRY 232 (237)
T ss_dssp -HC--SSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHH-HHHTSHHHHHHHHHT
T ss_pred -cC--CCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHH-HHHcCHHHHHHHHHc
Confidence 11 12433 33322 233457788888864 3333333 333333444554443
No 132
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=88.62 E-value=2.4 Score=42.64 Aligned_cols=108 Identities=9% Similarity=-0.052 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CC
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~a 79 (829)
++..-+..+++.+...|.+++++|..+.+ ....-.+.+.+++++.|+.+.....+....+.++-.+.+.++.+. ..
T Consensus 103 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (275)
T 3d8u_A 103 DHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSL 182 (275)
T ss_dssp CHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTC
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCC
Confidence 34444566777776779999999986533 345567788899999997654332222222333334445554433 34
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.+ |++.+...+..+++.+++.|+..++.+-|.
T Consensus 183 ~a-i~~~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 183 NA-LVCSHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp CE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CE-EEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 44 445667778889999999997655544444
No 133
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=88.59 E-value=6.7 Score=40.20 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++........ .+. +.|+....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l~-~~~L~~~~~~~v~~ 169 (312)
T 2h9b_A 104 LLPRIIHLYRQAHP-NLRIELYE---------MGTKAQTEALKEGRIDAGFGRLKISDP---AIK-HSLLRNERLMVAVH 169 (312)
T ss_dssp THHHHHHHHHHTCT-TCEEEEEE---------CCHHHHHHHHHTTSCSEEEESSCCCCT---TEE-EEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEeCCCCCC---Cce-EEEeecceEEEEEc
Confidence 45678888888876 46666655 257889999999999999864332211 122 35777888888888
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 170 ~~ 171 (312)
T 2h9b_A 170 AS 171 (312)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 134
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=88.32 E-value=1.4 Score=45.06 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeC--ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCe
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDN--QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTR 80 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~ar 80 (829)
+...+..+++.+...|.+++++|..+. ..+..-.+.+.+++++.|+.+.....+....+.+.-...+.++.+. ..+
T Consensus 123 ~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (296)
T 3brq_A 123 HKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFS 202 (296)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCS
T ss_pred hHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCC
Confidence 334456677777677999999998553 2445567788899999997654322222222333334445555433 345
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
+|+ +.+...+..+++++++.|+..++.+-|+
T Consensus 203 ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 233 (296)
T 3brq_A 203 ALV-ASNDDMAIGAMKALHERGVAVPEQVSVI 233 (296)
T ss_dssp EEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred EEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 444 5567778889999999998655444443
No 135
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=88.29 E-value=0.43 Score=45.78 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=42.1
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-.+++..+.++.+ .+++++... +. +.+|.+|++|+++....... ..+. +.++....++++++
T Consensus 21 ~l~~~l~~f~~~~P-~v~l~i~~~-----------~~-~~~l~~g~~D~~i~~~~~~~---~~~~-~~~l~~~~~~~v~~ 83 (213)
T 3hhf_B 21 LLAPLAAKFNERYP-HIRLSLVSS-----------EG-YINLIERKVDIALRAGELDD---SGLR-ARHLFDSRFRVIAS 83 (213)
T ss_dssp THHHHHHHHHHHCT-TEEEEEECC-----------ST-THHHHTTSSSEEEECC--CC---SSEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC-----------Cc-HHHHHhCCccEEEEEecCCC---ccce-EEeeecceEEEEeC
Confidence 55688899999887 466666521 11 34588999999986543222 2222 46788888888887
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 84 ~~ 85 (213)
T 3hhf_B 84 PE 85 (213)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 136
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=88.08 E-value=1.7 Score=43.77 Aligned_cols=108 Identities=10% Similarity=0.028 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeC-c-----ccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDN-Q-----YGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT 76 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd-~-----yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~ 76 (829)
++...+..+++.+...|-+++++|.... . ... .-.+.+.+++++.|+.+.....+....+.++-...+.++.+
T Consensus 97 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (276)
T 2h0a_A 97 DNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLE 176 (276)
T ss_dssp CSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHh
Confidence 3445566677877777999999998654 3 344 56778889999999765321111111223333444555544
Q ss_pred CC--CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 77 MQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 77 ~~--arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. ...|+ +++...+..+++.+++.|+..++.+-|.
T Consensus 177 ~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 177 KASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp TCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred CCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 33 44444 6677788899999999998655555554
No 137
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=87.90 E-value=9.7 Score=39.12 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++....... ..+. ..|+....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 104 LLPEIIYLFRQQNP-EIHIELIE---------CGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIH 169 (313)
T ss_dssp THHHHHHHHHHHCT-TSEEEEEE---------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEe---------CChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEc
Confidence 45678888888887 46666655 25788999999999999986433221 1122 35777888888888
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 170 ~~ 171 (313)
T 2h98_A 170 KH 171 (313)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 138
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=87.60 E-value=0.36 Score=51.05 Aligned_cols=125 Identities=11% Similarity=0.029 Sum_probs=73.3
Q ss_pred ccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEEEe
Q 043276 472 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQK 549 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~~~ 549 (829)
++.+++||++.++...| + ..|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ...+.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67889999999999776 3 468899999999999999999999999999999887665432221 11111 22344433
Q ss_pred C-chHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHh
Q 043276 550 G-SFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIG 604 (829)
Q Consensus 550 ~-s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 604 (829)
. ..-....+.+..... +...+..++..+ +.... +.++..+......+.+
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~----~~~i~gd~~~~~~L~~ 172 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSG----ANFVHGDPTRVSDLEK 172 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTT----CEEEESCTTSHHHHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCC----cEEEEeCCCCHHHHHh
Confidence 3 333333333222223 555666566666 55432 6777777655554443
No 139
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=86.97 E-value=2.1 Score=43.47 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CC
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~a 79 (829)
++...+..+++.+...|.+++++|..+ ......-.+.+.+++++.|+.+.....+....+.++....+.++.+. ..
T Consensus 109 d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (289)
T 1dbq_A 109 NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP 188 (289)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCC
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCC
Confidence 344456667777777799999999754 23455667889999999997653221222222233334445554433 34
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.+| ++.+...+..+++.+++.|+..++-+-|.
T Consensus 189 ~ai-~~~~d~~a~g~~~al~~~G~~vP~di~vv 220 (289)
T 1dbq_A 189 TAV-FCGGDIMAMGALCAADEMGLRVPQDVSLI 220 (289)
T ss_dssp SEE-EESCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CEE-EECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 544 45567788889999999998655544443
No 140
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=86.85 E-value=3.3 Score=42.06 Aligned_cols=109 Identities=9% Similarity=0.029 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
++..-+..+++.+...|-+++++|....+ ....-.+.+.+++++.|+.+.....+....+.+...+.+.++.+...++
T Consensus 110 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (288)
T 3gv0_A 110 DNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRP 189 (288)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCC
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCC
Confidence 34455667777887789999999975533 2445678888999999987654322333333344445566655443332
Q ss_pred -EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 -FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|++++...+..+++.+++.|+..++-+-|+
T Consensus 190 ~ai~~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 190 DGIVSISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp SEEEESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 3456677788889999999998655544444
No 141
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=85.69 E-value=2.1 Score=43.32 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~arV 81 (829)
++..-+..+++.+...|-+++++|.........-.+.+.+++++.|+.+.... +....+.+.-.+.+.++.+. ...+
T Consensus 101 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~a 179 (280)
T 3gyb_A 101 DDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTA 179 (280)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCE
T ss_pred chHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCE
Confidence 34455567777787789999999986655555667788889999998765332 32233333333444444332 3444
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|++++...+..+++.+++.|+..++.+-|+
T Consensus 180 -i~~~~d~~a~g~~~al~~~g~~vP~di~vv 209 (280)
T 3gyb_A 180 -IFSSNDITAIGALGAARELGLRVPEDLSII 209 (280)
T ss_dssp -EEESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred -EEECChHHHHHHHHHHHHcCCCCCCeeEEE
Confidence 455677788899999999998655544443
No 142
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=85.63 E-value=2.3 Score=43.31 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
++..-+..+++.|...|-+++++|....+ ....-.+.+.+++++.|+.+.....+....+.+...+.+.++.+...++
T Consensus 114 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 193 (292)
T 3k4h_A 114 DNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPP 193 (292)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCC
T ss_pred CcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCC
Confidence 34445566777787789999999985533 2345577888999999976543222222223334445555554443332
Q ss_pred -EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 -FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|++++...+..+++.+++.|+..++-+-|+
T Consensus 194 ~ai~~~~d~~a~g~~~al~~~g~~vP~di~vi 225 (292)
T 3k4h_A 194 TAIMATDDLIGLGVLSALSKKGFVVPKDVSIV 225 (292)
T ss_dssp SEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cEEEEcChHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3446677788899999999998655544443
No 143
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=84.65 E-value=2.6 Score=42.78 Aligned_cols=110 Identities=7% Similarity=0.047 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
++..-+..+++.|...|-+++++|..+.+ ....-.+.+.+++++.|+.+.....+....+.+...+.+.++.+...++
T Consensus 110 D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (289)
T 3g85_A 110 DNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTP 189 (289)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCC
Confidence 34455566777787789999999985533 3355678888999999976542222222223344445555554433322
Q ss_pred -EEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 82 -FILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
.|++++...+..+++.+++.|+..++.+-|++
T Consensus 190 ~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 190 KALFCNSDSIALGVISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp SEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 34466777888999999999986655555443
No 144
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=84.54 E-value=3.7 Score=41.82 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeC-c--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--C
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDN-Q--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--Q 78 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd-~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~ 78 (829)
++..-+..+++.|...|.+++++|.... + ....-.+.+.+++++.|+.+.....+....+.++-.+.+.++.+. .
T Consensus 116 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (289)
T 2fep_A 116 DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK 195 (289)
T ss_dssp CHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSC
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCC
Confidence 3444556677777777999999998553 2 345667888999999997654221122222333334455555443 3
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
... |++.+...+..+++.+++.|+..++-+-|+
T Consensus 196 ~~a-i~~~~d~~A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 196 PTA-ILSATDEMALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp CSE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCE-EEECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 344 445667778899999999997655544443
No 145
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=84.44 E-value=11 Score=36.61 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=56.9
Q ss_pred CCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
+..+.||||++ +.+. ..+-.+++..+.++.+ .+++++.. ++..+++..|.+|
T Consensus 24 ~~~g~l~Ig~~--~~~~----------------~~~l~~~l~~f~~~~P-~i~l~i~~---------~~~~~~~~~L~~g 75 (238)
T 3onm_A 24 NMEGSLIIGAS--DDTA----------------DTLLPFLLNRVATLYP-RLAIDVRV---------KRSPFIADMLSSG 75 (238)
T ss_dssp ---CCEEEEEC--HHHH----------------TTHHHHHHHHHHHHCT-TCCEEEEE---------CCHHHHHHHHHHT
T ss_pred CCceeEEEecc--chhh----------------HHHHHHHHHHHHHHCC-CcEEEEEE---------CCHHHHHHHHHCC
Confidence 34678999987 2211 2345678888988887 46776665 3578999999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
++|+++..... ..+ -+.++....++++++..
T Consensus 76 ~~Dl~i~~~~~-----~~~-~~~~l~~~~~~~v~~~~ 106 (238)
T 3onm_A 76 EVDLAITTAKV-----DSH-PHVILRTSPTLWYCSVD 106 (238)
T ss_dssp SCSEEEECSCC------CC-CEEEEEEECEEEEEETT
T ss_pred CccEEEEecCC-----CCc-ceEEeecCCEEEEEcCC
Confidence 99999864331 112 35678888899998854
No 146
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=84.37 E-value=3 Score=46.67 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=47.1
Q ss_pred CccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 471 HQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
.++.+++|+++.++...| .-.|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998776 3467888999999999999999999999988876544
No 147
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=83.74 E-value=3.4 Score=42.06 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc-CCCe
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTR 80 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~ar 80 (829)
++..-+..+++.+...|-+++++|... ......-.+.+.+++++.|+.+.....+....+.++-.+.+.++.+ ....
T Consensus 108 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (290)
T 3clk_A 108 DDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLT 187 (290)
T ss_dssp CHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCS
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCc
Confidence 344555667777777799999999754 2344556788889999999765321122222223333344555443 3344
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
. |++.+...+..+++.+++.|+..++.+-|+
T Consensus 188 a-i~~~~d~~a~g~~~al~~~g~~vP~di~vv 218 (290)
T 3clk_A 188 G-IIAASDMTAIGILNQASSFGIEVPKDLSIV 218 (290)
T ss_dssp E-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred E-EEECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 4 445667778889999999997655444443
No 148
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=83.58 E-value=2.8 Score=42.75 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCC
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~a 79 (829)
++..-+..+++.|...|-+++++|....+ ....-.+.+.+++++.|+.+.....+....+.++-...+.++.+ ...
T Consensus 111 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (290)
T 2rgy_A 111 DHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPF 190 (290)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCC
Confidence 34444566677777779999999985532 33455777888999998765322112222223333333444332 344
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
..|+ +++...+..+++.+++.|+..++-+-|.
T Consensus 191 ~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 191 TGLF-CANDTMAVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp SEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 5544 5677788899999999998655544443
No 149
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=83.13 E-value=8.3 Score=39.91 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=44.3
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHH
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYA 599 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 599 (829)
.+|++++|| +|+++.+.........++.++... +. -...|...+|++|. +|+.....+.+
T Consensus 133 ~pI~s~~Dl--kGlKiRv~~~~~~~~~~~alGa~p---v~-m~~~Evy~ALq~G~----vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADM--KGLKLRVPNAATNLAYAKYVGASP---TP-MAFSEVYLALQTNA----VDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGG--TTCEEEECSCHHHHHHHHHHTCEE---EE-CCGGGHHHHHHTTS----SSEEEEEHHHH
T ss_pred CCcCCHHHh--CCCEEEeCCCHHHHHHHHHcCCee---ee-cCHHHHHHHHHcCC----cceEeccHHHH
Confidence 479999999 599988765444456788877532 22 24578999999999 99988776655
No 150
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=82.54 E-value=3.6 Score=42.96 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeC--ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
++..-+..+++.+...|.+++++|.... .....-.+.+.+++++.|+.+.....+....+.+.-...+.++.+...++
T Consensus 164 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (338)
T 3dbi_A 164 DHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKF 243 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCC
T ss_pred ChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 3444455666777778999999997542 23345577888999999976543222222333333334444444333332
Q ss_pred -EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 -FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|++.+...+..+++.+++.|+..++-+-|.
T Consensus 244 ~ai~~~nd~~A~g~~~al~~~G~~vP~di~vv 275 (338)
T 3dbi_A 244 SALVASNDDMAIGAMKALHERGVAVPEQVSVI 275 (338)
T ss_dssp SEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred eEEEECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 3445677788899999999998665554444
No 151
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=82.49 E-value=7 Score=39.26 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCe-
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTR- 80 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~ar- 80 (829)
+..-+..+++.|...|-+++++|..+.. ....-.+.+.+++++.|+.+. .+....+.++-...+.++.+. ..+
T Consensus 102 ~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (277)
T 3cs3_A 102 NRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEP 178 (277)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSS
T ss_pred cHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCC
Confidence 3344555667776679999999985532 234557778889999998765 122222333444455555444 222
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
-.|++.+...+..+++.+++.|+..++.+.|++
T Consensus 179 ~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 179 VDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp EEEEESSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred cEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 234556777788899999999976556566553
No 152
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=82.24 E-value=7.6 Score=40.53 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=44.2
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHH
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYA 599 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 599 (829)
.+|++++|| +|+++.+..+......++.++... +. -...|...+|++|. +|+.....+.+
T Consensus 148 ~pI~s~~DL--kG~KiRv~~~~~~~~~~~alGa~p---v~-m~~~Evy~ALq~G~----VDg~~~p~~~~ 207 (327)
T 2hpg_A 148 KPIRKPEDL--NGLRIRTPGAPAWQESIRSLGAIP---VA-VNFGEIYTAVQTRA----VDGAELTYANV 207 (327)
T ss_dssp SCCSSGGGG--TTCEEECCSSHHHHHHHHHHTSEE---EC-CCGGGHHHHHHTTS----CSEEEECHHHH
T ss_pred CCCCCHHHH--CCCEEEeCCCHHHHHHHHHcCCEe---ee-cCHHHHHHHHHcCC----eeEEECCHHHH
Confidence 469999999 599888764445567888877532 22 25678999999999 99998765443
No 153
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=82.23 E-value=4.2 Score=41.23 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc-C---C
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-M---Q 78 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~---~ 78 (829)
+..-+..+++.|...|-+++++|....+ ....-.+.+.+++++.|+.+.....+....+.++-.+.+.++.+ . .
T Consensus 109 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (287)
T 3bbl_A 109 GTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERR 188 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTS
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3444566667776669999999985432 34455777888999999765321111222223333344555544 3 3
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
... |++.+...+..+++.+++.|+..++-+-|+
T Consensus 189 ~~a-i~~~~d~~a~g~~~al~~~G~~vP~di~vi 221 (287)
T 3bbl_A 189 PTA-IMTLNDTMAIGAMAAARERGLTIGTDLAII 221 (287)
T ss_dssp CSE-EEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred CcE-EEECCcHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 444 445667788889999999998655444433
No 154
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=82.16 E-value=2.4 Score=43.98 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEe
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVG 391 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~ 391 (829)
..+++.+.+.+|+++++. .+ .+-.-+...|.+|++|+.+.
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~--~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKP--SE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCC--EE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEe--ec--------CchHHHHHHHhcCCceEEec
Confidence 356667777889876653 21 13467788999999999874
No 155
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=82.13 E-value=3.4 Score=41.97 Aligned_cols=108 Identities=10% Similarity=-0.061 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeC--ccccchHHHHHHHHHhCCceeeeEEec--CCCC----ChhHHHHHHHHhh
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEELIPSLTDALQAIDTRVPYRSVI--SPLA----TDDQIEKELYKLF 75 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~gi~I~~~~~i--~~~~----~~~~~~~~l~~lk 75 (829)
++...+..+++.+...|-+++++|.... .....-.+.+.+++++.|+.+.....+ .... +.++-...+.++.
T Consensus 105 d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 184 (288)
T 2qu7_A 105 DNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLL 184 (288)
T ss_dssp CHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHH
Confidence 3445566777877778999999998543 234556778888999999765422122 2221 1222223344433
Q ss_pred cCCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 76 TMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 76 ~~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
+....+|+ +.+...+..+++.+++.|+..++.+-|+
T Consensus 185 ~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 220 (288)
T 2qu7_A 185 SKGIKGIV-ATNHLLLLGALQAIKESEKEIKKDVIIV 220 (288)
T ss_dssp HTTCCEEE-ECSHHHHHHHHHHHHHSSCCBTTTBEEE
T ss_pred hcCCCEEE-ECCcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 33555544 5566778889999999997655544444
No 156
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=81.04 E-value=8.3 Score=38.23 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCC-------CChhHHHHHHHH-h-hcCCC
Q 043276 9 VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYK-L-FTMQT 79 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~-------~~~~~~~~~l~~-l-k~~~a 79 (829)
+.|+++-++..|-++|+++.. |.....+.+.+.+++.|+.|......... .+.+.+.+.+.+ + ...++
T Consensus 105 ~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 567888889999999999974 77777888899999999987654443211 122345555555 5 55566
Q ss_pred eEEEEEcC
Q 043276 80 RVFILHML 87 (829)
Q Consensus 80 rViIv~~~ 87 (829)
+.||+-|.
T Consensus 182 daivL~CT 189 (240)
T 3ixl_A 182 DGILLSSG 189 (240)
T ss_dssp SEEEEECT
T ss_pred CEEEEeCC
Confidence 66666554
No 157
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=80.99 E-value=5.8 Score=40.40 Aligned_cols=108 Identities=8% Similarity=0.076 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE-
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV- 81 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV- 81 (829)
+..-+..+++.|...|-+++++|....+. ...-.+.+.+++++.|+.+.....+....+.+.-...+.++.+...++
T Consensus 110 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (294)
T 3qk7_A 110 NHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPT 189 (294)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCS
T ss_pred hHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCc
Confidence 44455566777777899999999865432 345578888999999976432111111222333334444444332222
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|++++...|..+++.+++.|+..++-+-|+
T Consensus 190 ai~~~nd~~A~g~~~al~~~G~~vP~di~vi 220 (294)
T 3qk7_A 190 AIITDCNMLGDGVASALDKAGLLGGEGISLI 220 (294)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCSSTTSCEEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 3456677888899999999998665544444
No 158
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=80.93 E-value=5 Score=41.94 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCeE
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRV 81 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~arV 81 (829)
..-+..+++.|...|.+++++|....+ ....-.+.+.+++++.|+.+.....+....+.+.-...+.++.+. ....
T Consensus 162 ~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 241 (340)
T 1qpz_A 162 FEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA 241 (340)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcE
Confidence 334456667676669999999975432 345557788899999997653221222222333333445554443 3444
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|++.+...+..+++.+++.|+..++-+-|+
T Consensus 242 -i~~~nd~~A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 242 -VFCGGDIMAMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp -EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred -EEECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 445667788889999999998655544444
No 159
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=80.14 E-value=2.3 Score=43.09 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=49.7
Q ss_pred CccchhHHHHHHHhhhcC-c-cccccc-------hhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHH
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ERVISN-------LARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVN 536 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~~~s~-------~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~ 536 (829)
..+.+++|+++.++...| + ..|.+. ..|++.++|+++++.+.+...+.+++++...+....+..-+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~ 274 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKK 274 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC---
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 357899999999998776 3 345444 36999999999999999999999999887766554444333
No 160
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=80.09 E-value=3.7 Score=42.80 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeC-c--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCe
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDN-Q--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTR 80 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd-~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~ar 80 (829)
..-+..+++.|...|.+++++|.... + ....-.+.+.+++++.|+.+.....+....+.+.-...+.++.+. ...
T Consensus 162 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 241 (332)
T 2hsg_A 162 EQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPT 241 (332)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCe
Confidence 33445666777677999999998553 2 345667889999999997653211111122233333444444433 344
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|+ +.+...+..++..+++.|+..++-+-|.
T Consensus 242 ai~-~~nd~~A~g~~~al~~~G~~vP~disvv 272 (332)
T 2hsg_A 242 AIF-VGTDEMALGVIHGAQDRGLNVPNDLEII 272 (332)
T ss_dssp EEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEE
T ss_pred EEE-ECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 444 5677788889999999997544444443
No 161
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=80.08 E-value=5 Score=40.61 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHH--hhcC--C
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYK--LFTM--Q 78 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~--lk~~--~ 78 (829)
+..-+..+++.+...|-+++++|..... ....-.+.+.+++++.|+.+. ... ...+.++-...+.+ +.+. .
T Consensus 108 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~ 184 (285)
T 3c3k_A 108 DVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RIS--YAENLDYMAGKLATFSLLKSAVK 184 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEE--ECSSSSHHHHHHHHHHHHSSSSC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-Eee--cCCChHHHHHHHHHHHHHcCCCC
Confidence 3344566667776679999999986533 344556778888999887654 111 11112233344455 4433 3
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
... |++.+...+..+++.+++.|+..++-+-|.
T Consensus 185 ~~a-i~~~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 185 PDA-IFAISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp CSE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CeE-EEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 444 445667788889999999998655555544
No 162
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=79.76 E-value=8.8 Score=38.88 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc-ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE-E
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY-GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV-F 82 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y-G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV-i 82 (829)
+..-+..+++.|...|-+++++|.....+ ...-.+.+.+++++.|+.+... .+....+.+.-.+.+.++.+...++ .
T Consensus 110 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a 188 (289)
T 3k9c_A 110 DVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTA 188 (289)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSE
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCE
Confidence 34445566777777899999999855433 3445777888999999875432 2333333344444555554433332 3
Q ss_pred EEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 83 ILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 83 Iv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|++++...+..++..+++.|+..++-+-|+
T Consensus 189 i~~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 189 VVAFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 456677788899999999998655555444
No 163
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=79.34 E-value=28 Score=34.29 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEE
Q 043276 345 FKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVV 390 (829)
Q Consensus 345 l~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~ 390 (829)
++...++.|+ +++++.+. +|.....+|..|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f~--------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEFT--------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEECS--------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEcC--------ChHHHHHHHHcCCCCEec
Confidence 3445566675 66777776 799999999999999974
No 164
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=79.27 E-value=11 Score=38.21 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc-----CC
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-----MQ 78 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-----~~ 78 (829)
..-+..+++.|...|-+++++|....+. ...-.+.+.+++++.|+.+... ....+.+.....+.++.+ ..
T Consensus 116 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (295)
T 3hcw_A 116 ILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQII---ETSNEREVILNYMQNLHTRLKDPNI 192 (295)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEE---EECSCHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEE---eccCCHHHHHHHHHHHHhhcccCCC
Confidence 3445566666766799999999865433 3456788889999999876522 112223333333333322 13
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
..+ |++++...|..+++.+++.|+..++-+-|+
T Consensus 193 ~~a-i~~~~d~~A~g~~~al~~~g~~vP~di~vi 225 (295)
T 3hcw_A 193 KQA-IISLDAMLHLAILSVLYELNIEIPKDVMTA 225 (295)
T ss_dssp CEE-EEESSHHHHHHHHHHHHHTTCCTTTTEEEE
T ss_pred CcE-EEECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 444 446677778899999999998666555444
No 165
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=79.23 E-value=5.2 Score=40.60 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=55.8
Q ss_pred CCCHHHHHhCCC--cEEEEeCch-----HHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHh
Q 043276 532 ITDVNLLIKRGD--NVGYQKGSF-----VLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIG 604 (829)
Q Consensus 532 I~s~~dL~~~~~--~vg~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 604 (829)
|+|++||..... ++|...+.. ...+++..+++...+... +..+...++.+|+ ++++..-.+.....
T Consensus 125 i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~~-- 197 (275)
T 1sw5_A 125 VEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRVD-- 197 (275)
T ss_dssp CCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHHH--
T ss_pred CCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcchh--
Confidence 799999963321 445432211 112555566654445454 5667899999999 99988877765532
Q ss_pred cCCCceEEeCcc---cccCCceeeecCCCCchhhHHHHHHhhh
Q 043276 605 QHCSKYTMVEPT---FKTAGFGFAFPLHSPLVHDVSKAILNVT 644 (829)
Q Consensus 605 ~~c~~l~~v~~~---~~~~~~~~~~~k~spl~~~in~~il~l~ 644 (829)
++ .+.++... +.......+++++..=.+.+-++|.++.
T Consensus 198 ~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 198 LF--NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp HT--TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred cC--CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 22 25555432 2222334455554210033444554443
No 166
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=79.19 E-value=12 Score=38.36 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHc--CCcEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--
Q 043276 4 NDSSQVGAITAIIKAF--GWREAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-- 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~f--gW~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-- 77 (829)
++...+..+++.+... |-++|++|... ........+.+.+++++.|+.+..... ...+.++..+.+.++.+.
T Consensus 104 d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 181 (313)
T 2h3h_A 104 DNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILN--DEEDGARAVSLAEAALNAHP 181 (313)
T ss_dssp CHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE--CSSCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeec--CCCCHHHHHHHHHHHHHHCc
Confidence 4445566777777665 99999999854 334456678888999999988754322 222333444445554433
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCc
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm 103 (829)
...+|+ +.+...+..+++.+++.|.
T Consensus 182 ~~~ai~-~~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 182 DLDAFF-GVYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp TCCEEE-ECSTTHHHHHHHHHHHTTC
T ss_pred CceEEE-EcCCCccHHHHHHHHHcCC
Confidence 334444 4556678889999999983
No 167
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=78.87 E-value=10 Score=38.53 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHHc--CCcEEEEEEEeCc-cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 4 NDSSQVGAITAIIKAF--GWREAVPIYVDNQ-YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 4 sD~~q~~ai~~ll~~f--gW~~V~iI~~dd~-yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
++..-+..+++.+... |-+++++|...+. ....-.+.+.+++++.|..+.....+....+.+.....+.++.+...+
T Consensus 108 d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (305)
T 3g1w_A 108 NNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPN 187 (305)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 4455566777777666 9999999984432 223456678888888776554433332233333444444444333333
Q ss_pred E-EEEEcChhHHHHHHHHHHHcCccccCeEEEEcC
Q 043276 81 V-FILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 114 (829)
Q Consensus 81 V-iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~ 114 (829)
+ .|++++...+..+++.+++.|+. .+...+.-|
T Consensus 188 ~~ai~~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 188 LAGIFATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred ceEEEECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 3 35556677888999999999975 333444433
No 168
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=78.55 E-value=5.7 Score=41.35 Aligned_cols=106 Identities=10% Similarity=-0.017 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEE
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFI 83 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViI 83 (829)
..-+..+++.|...|.+++++|..+.+ ....-.+.+.+++++.|+.+.....+....+.++-...+.++.+.....|+
T Consensus 165 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~ 244 (332)
T 2o20_A 165 HLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAV 244 (332)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEE
Confidence 334556667777779999999985532 334557788899999997654221222222233323334433322555544
Q ss_pred EEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 84 LHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 84 v~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
+++...+..+++.+++.|+..++-+-|.
T Consensus 245 -~~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 245 -VSHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp -ESCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred -ECChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 4677788889999999998655555444
No 169
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=78.22 E-value=6.1 Score=40.28 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=61.9
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCcccee-ecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCce
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLV-VYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKY 610 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l 610 (829)
+++++|| .+++|++..-...+.||++.+.+ .+++ .+.+.|-. -..|- .|++++-.....-+.++ .|
T Consensus 121 ~~~~~~l--~~~RIATkYp~l~r~yf~~~gi~-~~Ii~l~GsvE~a---P~~Gl----ADaIvDiVsTG~TLraN---gL 187 (304)
T 1nh8_A 121 NWTTADL--AGMRIATAYPNLVRKDLATKGIE-ATVIRLDGAVEIS---VQLGV----ADAIADVVGSGRTLSQH---DL 187 (304)
T ss_dssp CCCGGGG--TTCEEEESCHHHHHHHHHHHTCC-CEEEECSSCCTHH---HHTTS----CSEEEEEESSSHHHHHT---TE
T ss_pred cCChHHh--CCCEEEeCcHHHHHHHHHHCCCe-EEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHC---cC
Confidence 5678888 47899988778889999887776 3444 44455422 34566 77777766555444444 36
Q ss_pred EEeCcccccCCceeeecCCCC-c--hhhHHHHHHhhh
Q 043276 611 TMVEPTFKTAGFGFAFPLHSP-L--VHDVSKAILNVT 644 (829)
Q Consensus 611 ~~v~~~~~~~~~~~~~~k~sp-l--~~~in~~il~l~ 644 (829)
..+++.+....-.+..+|.+. . .+.++..+.++.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 677555555666677777762 2 235666666664
No 170
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=78.14 E-value=8.4 Score=39.05 Aligned_cols=106 Identities=7% Similarity=-0.028 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC--C
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--T 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~--a 79 (829)
++...+..+++.|...|.+++++|....+ ....-.+.+.+++++.|+..... +....+.+.-...+.++.+.. .
T Consensus 121 d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ 198 (293)
T 2iks_A 121 ADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMP 198 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCC
Confidence 34445556677776779999999986533 33455777888999998743322 222223333344555554433 3
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. |++.+...+..+++.+++.|+..++.+-|+
T Consensus 199 ~a-i~~~~d~~a~g~~~al~~~g~~vP~di~vv 230 (293)
T 2iks_A 199 QA-LFTTSFALLQGVMDVTLRRDGKLPSDLAIA 230 (293)
T ss_dssp SE-EEESSHHHHHHHHHHHHHHHSSCCSSCEEE
T ss_pred CE-EEECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 44 445667778889999999997655544444
No 171
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=78.08 E-value=6 Score=42.47 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCcEEEEEEEeCcccc--chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGE--ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~--~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
.+.++++.+|.+++.||+...-+.. +..+.+.+.|++.|+++.....+..+.+.+.+.+.+..+++.++++||-.+..
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3567788889999999986655555 58999999999999886443344555566778888888888999999988654
Q ss_pred --hHHHHHHHHH
Q 043276 89 --SLGSRIFEKA 98 (829)
Q Consensus 89 --~~~~~i~~~a 98 (829)
-++..+....
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 3444554443
No 172
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=78.06 E-value=7.4 Score=38.85 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHHc----CCcEEEEEEEeC--ccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhc
Q 043276 4 NDSSQVGAITAIIKAF----GWREAVPIYVDN--QYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFT 76 (829)
Q Consensus 4 sD~~q~~ai~~ll~~f----gW~~V~iI~~dd--~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~ 76 (829)
++..-+..+++.+... |-+++++|..+. .....-.+.+.+++++. |+.+.. .+....+.+...+.+.++.+
T Consensus 106 d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 183 (276)
T 3ksm_A 106 DNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA--APYAGDDRGAARSEMLRLLK 183 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE--CCBCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE--EecCCCcHHHHHHHHHHHHH
Confidence 4555666777777666 899999997442 33456678888999888 877652 22222233344444554443
Q ss_pred CCCeE-EEEEcChhHHHHHHHHHHHcCc
Q 043276 77 MQTRV-FILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 77 ~~arV-iIv~~~~~~~~~i~~~a~~~gm 103 (829)
...++ .|++.+...+..+++.+++.|+
T Consensus 184 ~~~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 184 ETPTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HCSCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred hCCCceEEEECCchhhhHHHHHHHHcCC
Confidence 33332 3445566778889999999996
No 173
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=77.84 E-value=3.6 Score=44.11 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 10 ~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
..+.++++.+|.+++.||+...-...+..+.+.+.|++.|+.+.....+..+.+.+.+.+.+..+++.++++||-.+...
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 34566788899999999986654444578999999999998875445566666777888888888888899999887653
Q ss_pred --HHHHHHHHHH
Q 043276 90 --LGSRIFEKAN 99 (829)
Q Consensus 90 --~~~~i~~~a~ 99 (829)
++..+.....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4455544443
No 174
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=77.47 E-value=7 Score=39.95 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHh-----hcC
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-----FTM 77 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l-----k~~ 77 (829)
+..-+..+++.|...|-+++++|....+ ....-.+.+.+++++.|+.+..........+.+.-...+.++ .+.
T Consensus 115 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 194 (303)
T 3kke_A 115 DQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGK 194 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTS
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcC
Confidence 3444556667777789999999985433 334567788899999997654211122222333444445555 433
Q ss_pred CCeE-EEEEcChhHHHHHHHHHHHcCccccCeEEE
Q 043276 78 QTRV-FILHMLPSLGSRIFEKANEIGLMNKGCVWI 111 (829)
Q Consensus 78 ~arV-iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI 111 (829)
..++ .|++++...+..+++.+++.|+..++-+-|
T Consensus 195 ~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~v 229 (303)
T 3kke_A 195 PDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSI 229 (303)
T ss_dssp TTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred CCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 3332 345567778889999999999865544433
No 175
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=77.24 E-value=13 Score=38.35 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhH
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPY 598 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~ 598 (829)
.+|++++|| +|+++.+..+......++.++... +. -...|...+|.+|. +|+.....+.
T Consensus 130 ~pI~s~~Dl--kG~KiR~~~~~~~~~~~~~lGa~p---v~-m~~~Evy~ALq~G~----VDg~~~~~~~ 188 (316)
T 2vpn_A 130 EPITSPEDF--DNKKIRTMTNPLLAETYKAFGATP---TP-LPWGEVYGGLQTGI----IDGQENPIFW 188 (316)
T ss_dssp SCCCSGGGG--TTCEEEECSCHHHHHHHHHHTCEE---EE-CCGGGHHHHHHHTS----CSEEEEEHHH
T ss_pred CCCCChHHh--CCCEEEeCCCHHHHHHHHHcCCee---ee-cCHHHHHHHHHcCC----cceeeCCHHH
Confidence 469999999 599998876666677888877532 22 25578999999999 9998765443
No 176
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=76.60 E-value=5.8 Score=41.51 Aligned_cols=107 Identities=9% Similarity=-0.013 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeC---ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCC
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDN---QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQT 79 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd---~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~a 79 (829)
+..-+..+++.|...|-+++++|.... .....-.+.+.+++++.|+.+.....+....+.+.-.+.+.++.+ ...
T Consensus 169 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 248 (344)
T 3kjx_A 169 HRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDL 248 (344)
T ss_dssp HHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 344455666777667999999998553 233455678889999999876544333333333333333443332 234
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. |++++...+..++..+++.|+..++-+-|+
T Consensus 249 ~a-i~~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 249 DF-LYYSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp CE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CE-EEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 44 446677888899999999998666655555
No 177
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=76.55 E-value=3.7 Score=42.80 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCeEE
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVF 82 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~arVi 82 (829)
..-+..+++.|...|.+++++|....+ ....-.+.+.+++++.|+.+. ...+....+.+.-...+.++.+. ....
T Consensus 157 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~a- 234 (330)
T 3ctp_A 157 YNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDG- 234 (330)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSE-
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcE-
Confidence 334456677776779999999986533 345567788899999998765 33332222222111222233222 3444
Q ss_pred EEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 83 ILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 83 Iv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|++++...+..++..+++.|+..++-+-|.
T Consensus 235 i~~~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 235 IFVFNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 445666778889999999998655555444
No 178
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=75.87 E-value=3.9 Score=41.52 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCC
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~a 79 (829)
++..-+..+++.+...|-+++++|....+ ....-.+.+.+++++.|+.+..........+.+...+.+.++.+ ...
T Consensus 108 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (291)
T 3egc_A 108 ENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRP 187 (291)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCC
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCC
Confidence 34455566777777789999999975532 34556778888999998764322111111111122233333332 234
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. |++++...+..+++.+++.|+..++-+-|+
T Consensus 188 ~a-i~~~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 188 TA-LLTSSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp SE-EEESSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred cE-EEECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 44 446777788899999999998655544444
No 179
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=75.61 E-value=11 Score=39.22 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc-cccchHHHHHHHHHhCCceee-eEEecCCCCChhHHHHHHHHhhcC--CC
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ-YGEELIPSLTDALQAIDTRVP-YRSVISPLATDDQIEKELYKLFTM--QT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~-yG~~~~~~l~~~l~~~gi~I~-~~~~i~~~~~~~~~~~~l~~lk~~--~a 79 (829)
++..-+..+++.|...|-+++++|....+ ....-.+.+.+++++.|+... .........+.+.-.+.+.++.+. ..
T Consensus 161 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 240 (339)
T 3h5o_A 161 SQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDC 240 (339)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCC
Confidence 34445556667777779999999986532 234456778889999987321 111222222333333344444322 34
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. |++++...+..++..+++.|+..++-+-|+
T Consensus 241 ~a-i~~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 241 DA-LFCCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp CE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cE-EEECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 44 456777888899999999998666555554
No 180
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=75.55 E-value=14 Score=38.71 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc---ccchHHHHHHHHHhCCceeeeEEecCC-CCChhHHHHHHHHhhc--CC
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY---GEELIPSLTDALQAIDTRVPYRSVISP-LATDDQIEKELYKLFT--MQ 78 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y---G~~~~~~l~~~l~~~gi~I~~~~~i~~-~~~~~~~~~~l~~lk~--~~ 78 (829)
+..-+..+++.|...|-+++++|...... ...-.+.+.+++++.|+.+.....+.. ..+.+.-...+.++.+ ..
T Consensus 171 ~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 250 (355)
T 3e3m_A 171 NERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPD 250 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 34445566677777899999999865432 345678889999999987542222221 2222333333443332 23
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
... |++++...+..++..+++.|+..++-+-|++
T Consensus 251 ~~a-i~~~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 251 TDC-IFCVSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp CCE-EEESSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred CcE-EEECChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 444 5567778888999999999986665555543
No 181
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=74.53 E-value=3 Score=42.22 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=49.8
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.++||++ +.+ ...+-..++..+.++.+ .+++++...+ . +.++.+|++
T Consensus 87 ~~~l~I~~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~i~~~~~~--------~----~~~l~~~~~ 135 (300)
T 3mz1_A 87 KGRLRVETA--SAF----------------ANLVIIPALPEFHKKYP-DIQIDLGVSD--------R----TIDYLAENV 135 (300)
T ss_dssp CEEEEEEEC--HHH----------------HHHTHHHHHHHHHHHCT-TEEEEEEECC--------C----C--CCCTTC
T ss_pred CceEEEEec--HHH----------------HHHHHHHHHHHHHHHCC-CcEEEEEeCC--------C----cccccccCC
Confidence 567999987 221 12345678888888887 4666665421 1 125788999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|+++........ .+. +.++....++++++..
T Consensus 136 Dl~i~~~~~~~~---~l~-~~~l~~~~~~~v~~~~ 166 (300)
T 3mz1_A 136 DCAIRAGTLTDQ---SLI-ARRITEMKFVACASRD 166 (300)
T ss_dssp CEEEEESSCSCT---TSE-EEEEEEECEEEEEEHH
T ss_pred cEEEEeccCCCC---CeE-EEEeecceeEEEECHH
Confidence 999965433222 222 3577778888888743
No 182
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=74.09 E-value=15 Score=36.52 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--C-C
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--M-Q 78 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~-~ 78 (829)
++..-+..+++.+...|-++++++....+ ....-.+.+.+++++.|+.+..... ...+.+...+.+.++.+ . .
T Consensus 103 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 180 (272)
T 3o74_A 103 DDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQG--EAFSRECGQRLMQQLIDDLGGL 180 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEE--SSSSHHHHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeec--CCCCHHHHHHHHHHHHhcCCCC
Confidence 34445566777787789999999986543 3455678888999999987644322 22233333344444332 2 3
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
...| ++.+...+..+++.+++.|+ .++-+-|.
T Consensus 181 ~~ai-~~~~d~~a~g~~~al~~~g~-vp~di~vv 212 (272)
T 3o74_A 181 PDAL-VTTSYVLLQGVFDTLQARPV-DSRQLQLG 212 (272)
T ss_dssp CSEE-EESSHHHHHHHHHHHHTSCG-GGCCCEEE
T ss_pred CcEE-EEeCchHHHHHHHHHHHcCC-CccceEEE
Confidence 4544 45677788899999999997 55544443
No 183
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=73.20 E-value=71 Score=33.46 Aligned_cols=70 Identities=9% Similarity=0.146 Sum_probs=42.6
Q ss_pred HHHHHHHHHC-CCcccEEEEecCCCCCCCCCChhHHHHhHh-cC-cccEEEeccccccccc---eeccccccccccceEE
Q 043276 343 DVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLIYQVF-LG-EFDAVVGDTTIVFNRS---NYVDFTLPYTESGVSM 416 (829)
Q Consensus 343 dll~~ia~~l-~f~~~~~~~~~~~~~g~~ng~~~~li~~l~-~g-~~Di~~~~~~it~~R~---~~vdft~p~~~~~~~~ 416 (829)
+|.+.+.++. |.++++.+- .-..++.++. .| .+|+.++.-.-..++. ...+...+|....+++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g-----------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVl 127 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA-----------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 127 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE-----------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC-----------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEE
Confidence 5677777777 765555432 2356778885 34 7999886432211221 1234456788889999
Q ss_pred EEEccCC
Q 043276 417 IVPIKDS 423 (829)
Q Consensus 417 vv~~~~~ 423 (829)
++++.+.
T Consensus 128 iv~~~~p 134 (354)
T 3k6v_A 128 AYTNESK 134 (354)
T ss_dssp EECTTST
T ss_pred EEECCCc
Confidence 9986543
No 184
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=73.19 E-value=18 Score=37.26 Aligned_cols=99 Identities=10% Similarity=-0.062 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHH--cCCcEEEEEEEeC--ccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhcC-
Q 043276 4 NDSSQVGAITAIIKA--FGWREAVPIYVDN--QYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM- 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~--fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~~- 77 (829)
++...+..+++.|.. -|-++|++|.... .....-.+.+.+++++. |+.+... +....+.++-.+.+.++.+.
T Consensus 117 D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~--~~~~~~~~~~~~~~~~ll~~~ 194 (332)
T 2rjo_A 117 DGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF--QVADWNSQKAFPIMQAWMTRF 194 (332)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee--ccCCCCHHHHHHHHHHHHHhc
Confidence 344455666676655 6999999998543 23455677888999998 9876542 22222333333444444333
Q ss_pred CCeE-EEEEcChhHHHHHHHHHHHcCcc
Q 043276 78 QTRV-FILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 78 ~arV-iIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
..++ .|++.+...+..+++.+++.|+.
T Consensus 195 ~~~~~aI~~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 195 NSKIKGVWAANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp GGGEEEEEESSHHHHHHHHHHHHHTTCB
T ss_pred CCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 2233 34456677788899999999964
No 185
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=72.99 E-value=5.7 Score=40.87 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=48.1
Q ss_pred CccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043276 471 HQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLT 524 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt 524 (829)
.++.+++||++.++...| ...|.+..+|++.++|.++++.+.....+.+...|.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999777 447899999999999999999999999999988874
No 186
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=72.72 E-value=5.7 Score=40.42 Aligned_cols=107 Identities=12% Similarity=-0.061 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHHHcCC--cEEEEEEEe------CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhh
Q 043276 4 NDSSQVGAITAIIKAFGW--REAVPIYVD------NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF 75 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW--~~V~iI~~d------d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk 75 (829)
++..-+..+++.+...|- +++++|..+ ......-.+.+.+++++.|..+..........+.+.-.+.+.++.
T Consensus 116 D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 195 (304)
T 3gbv_A 116 NSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFF 195 (304)
T ss_dssp CHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHH
Confidence 445556677788877788 999999843 223455677888899998765433222111111112223333332
Q ss_pred c--CCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcC
Q 043276 76 T--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 114 (829)
Q Consensus 76 ~--~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~ 114 (829)
+ ....+|++.. .. +..+++.+++.|+ .+...+.-|
T Consensus 196 ~~~~~~~ai~~~~-d~-a~g~~~al~~~g~--~di~vig~d 232 (304)
T 3gbv_A 196 REHPDVKHGITFN-SK-VYIIGEYLQQRRK--SDFSLIGYD 232 (304)
T ss_dssp HHCTTCCEEEESS-SC-THHHHHHHHHTTC--CSCEEEEES
T ss_pred HhCCCeEEEEEcC-cc-hHHHHHHHHHcCC--CCcEEEEeC
Confidence 2 2455555444 44 7889999999996 344444433
No 187
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=72.43 E-value=2.2 Score=43.07 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=50.8
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.++||++ +.+ ...+-.+++..+.++.+ .+++++...+ .+.+|.+|++
T Consensus 90 ~~~l~Ig~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~i~~~~~~------------~~~~l~~~~~ 138 (291)
T 3szp_A 90 SGRIRISAP--SNL----------------TKRMMMPMFNAFMEKYP-DIHIELMMSN------------QADDLDPTEW 138 (291)
T ss_dssp CEEEEEEEE--TTT----------------HHHHTHHHHHHHHHHCT-TEEEEEEEEC------------SCSCCCGGGC
T ss_pred ceEEEEecc--HHH----------------HHHHHHHHHHHHHHHCC-CeEEEEEEec------------CccCccccCc
Confidence 567999987 221 12345688899988887 4666665321 1347889999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPI 420 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~ 420 (829)
|+++....... ..+. ..|+....++++++.
T Consensus 139 Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~ 168 (291)
T 3szp_A 139 DVIFRVGPQRD---SSLI-ARKIGEVKDILVASP 168 (291)
T ss_dssp SEEEEESCCCC---TTCE-EEEEEEECEEEEECH
T ss_pred eEEEEecCCCC---CCee-EEEecccceEEEECH
Confidence 99986543222 2222 457777888888873
No 188
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=72.18 E-value=52 Score=30.31 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=40.8
Q ss_pred EeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEE
Q 043276 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIV 418 (829)
Q Consensus 339 G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv 418 (829)
.+-.+++..+.++.+ +++++... +..+++..+.+|..|+++..-.... ..+. +.++....+++++
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~~---------~~~~~~~~l~~g~d~~~i~~~~~~~---~~l~-~~~l~~~~~~~v~ 79 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAVD---------DQDHTVEWLRGGRVLAAVTAHDKPV---QGCR-VTPLGVLRYHATA 79 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEEC---------CSSCHHHHHHTTSCSEEEESCCSCC---TTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcC--eEEEEEeC---------CcHhHHHHHhcCcceEEEecCCCCC---CCce-EEEccceEEEEEE
Confidence 355678888888874 56666553 3467889999995555543212111 1222 4567777777777
Q ss_pred E
Q 043276 419 P 419 (829)
Q Consensus 419 ~ 419 (829)
+
T Consensus 80 ~ 80 (208)
T 3fd3_A 80 S 80 (208)
T ss_dssp C
T ss_pred C
Confidence 6
No 189
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=72.06 E-value=61 Score=31.95 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=46.6
Q ss_pred eHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccc-eeccccccccccceEEEEE
Q 043276 341 SIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRS-NYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 341 ~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~-~~vdft~p~~~~~~~~vv~ 419 (829)
-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++........+. ..+. ..|+....++++++
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~---------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG---------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE---------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhCC-CceEEEEe---------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 4567888888875 35666554 25788999999999999986543322110 1222 35778888888887
Q ss_pred cc
Q 043276 420 IK 421 (829)
Q Consensus 420 ~~ 421 (829)
..
T Consensus 111 ~~ 112 (290)
T 1twy_A 111 QA 112 (290)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 190
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=72.00 E-value=13 Score=37.67 Aligned_cols=105 Identities=8% Similarity=-0.039 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHcC--CcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--
Q 043276 4 NDSSQVGAITAIIKAFG--WREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-- 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fg--W~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-- 77 (829)
++...+..+++.+...| -+++++|..+.+ ....-.+.+.+++++.|+.+.... . ....+.....+.++.+.
T Consensus 111 D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~ 187 (297)
T 3rot_A 111 DNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHP 187 (297)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCC
Confidence 44555667777777777 999999975433 334567888999999999886543 2 22233444445543322
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccC-eEEEE
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKG-CVWIM 112 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~-~vwI~ 112 (829)
... .|++.+...+..+++.+++.|+..++ .+-|+
T Consensus 188 ~~~-ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vi 222 (297)
T 3rot_A 188 ETN-IIFCLTSQALDPLGQMLLHPDRYDFNYQPQVY 222 (297)
T ss_dssp TCC-EEEESSHHHHHHHHHHHHSHHHHTCCCCCEEE
T ss_pred CCC-EEEEcCCcchHHHHHHHHhcCCccCCCceEEE
Confidence 334 34556777888899999998875443 44443
No 191
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=71.62 E-value=19 Score=36.12 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHH-cC-CcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCC
Q 043276 4 NDSSQVGAITAIIKA-FG-WREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT 79 (829)
Q Consensus 4 sD~~q~~ai~~ll~~-fg-W~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~a 79 (829)
++...+..+++.+.. .| -+++++|....+ ....-.+.+.+++++.|..+... +....+.++....+.++.+...
T Consensus 112 D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 189 (289)
T 3brs_A 112 DNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYP 189 (289)
T ss_dssp CHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCC
Confidence 344455666676655 57 999999985432 34556778888999988764322 2222233344444554443333
Q ss_pred eE-EEEEcChhHHHHHHHHHHHcCcc
Q 043276 80 RV-FILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 80 rV-iIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
++ .|++.+...+..+++.+++.|+.
T Consensus 190 ~~~ai~~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 190 DISVMVGLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred CceEEEECCCcchHHHHHHHHhcCCC
Confidence 33 34456667788899999999974
No 192
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=71.35 E-value=12 Score=37.37 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=37.7
Q ss_pred HHHHHhCCCcEEEEeCchHHHHH-HhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcc-hhHHH
Q 043276 535 VNLLIKRGDNVGYQKGSFVLGIL-KQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDE-IPYAK 600 (829)
Q Consensus 535 ~~dL~~~~~~vg~~~~s~~~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~-~~~~~ 600 (829)
++|| .|++||+..++....++ +.. ....+++. -...+...++.+|+ +||.+.- .+++.
T Consensus 91 ~~dL--kGk~Ia~~~~~~~~~~ll~~l-l~~~~~~~-~~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQAL--EGLRVAVPGRHTTAYFLLSLY-AQGFVPVE-VRYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp CSCC--TTCEEEESCTTSHHHHHHHHH-CSSCEEEE-CCGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred hHHh--CCCEEEeCCCCchHHHHHHHH-hccCceee-cChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 5678 58999998665554443 332 22223333 34558899999999 9998874 55555
No 193
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=70.51 E-value=11 Score=40.52 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCcEEEEEEEeCcccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP- 88 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~- 88 (829)
.+.++++.+|.+++.||+.+..... +..+.+.+.|++.|+.+.....+..+.+.+.+.+.+..+++.++++||-.+..
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3566788889999999985444433 46888999999999876533333445566778888888888999999988664
Q ss_pred -hHHHHHHHH
Q 043276 89 -SLGSRIFEK 97 (829)
Q Consensus 89 -~~~~~i~~~ 97 (829)
-++..+...
T Consensus 113 viD~AK~iA~ 122 (407)
T 1vlj_A 113 VVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 344444443
No 194
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=69.72 E-value=5.5 Score=42.34 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCCCCHHHHHhCCCcEEEEe-------Cch-----------------------HHHHHHhcCCCcc--ceeecCChH--
Q 043276 529 QPTITDVNLLIKRGDNVGYQK-------GSF-----------------------VLGILKQLGFDER--KLVVYNSHE-- 574 (829)
Q Consensus 529 ~~~I~s~~dL~~~~~~vg~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~-- 574 (829)
.+.|++++|| .|++||+.. |+. ...+|++.+.+.. +++.+....
T Consensus 108 ds~I~s~~DL--kGk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 108 DSPITAAADL--AGRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp TCSCCSGGGG--TTCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCCHHHh--CCCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcCCCHHHeEEEECCCcccc
Confidence 4579999999 499999976 431 4456776666533 444554421
Q ss_pred -----------------------HHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcc----cccCCceeeec
Q 043276 575 -----------------------ECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPT----FKTAGFGFAFP 627 (829)
Q Consensus 575 -----------------------~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~----~~~~~~~~~~~ 627 (829)
+...+|.+|+ +||++...++......+ ..+++... .......++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~ 258 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVS 258 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEE
T ss_pred ccccccccccccccccccccchhhHHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEc
Confidence 2688999999 99999887776654442 24444322 11112355555
Q ss_pred C----CCC-chhh----HHHHHHhhhccC-hhHHHHHHHc
Q 043276 628 L----HSP-LVHD----VSKAILNVTEGD-KMKEIEDAWF 657 (829)
Q Consensus 628 k----~sp-l~~~----in~~il~l~e~G-~~~~~~~~w~ 657 (829)
+ ..| +... +.++...+.++. ...++..+++
T Consensus 259 ~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~ 298 (365)
T 2de3_A 259 SGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANL 298 (365)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 2 244 4444 445555555542 3444555554
No 195
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=69.61 E-value=21 Score=36.02 Aligned_cols=100 Identities=7% Similarity=-0.071 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHH-cCCc-EEEEEEEeC--ccccchHHHHHHHHHhCC--ceeeeEEecCCCCChhHHHHHHHHhhcC
Q 043276 4 NDSSQVGAITAIIKA-FGWR-EAVPIYVDN--QYGEELIPSLTDALQAID--TRVPYRSVISPLATDDQIEKELYKLFTM 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~-fgW~-~V~iI~~dd--~yG~~~~~~l~~~l~~~g--i~I~~~~~i~~~~~~~~~~~~l~~lk~~ 77 (829)
++...+..+++.+.. .|-+ +++++.... .......+.+.+++++.+ +.+... .+....+.++..+.+.++.+.
T Consensus 108 d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 186 (303)
T 3d02_A 108 DNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKT 186 (303)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHh
Confidence 444556667777655 8997 999887432 233455677888888754 443221 112122333444555555443
Q ss_pred CCeE-EEEEcChhHHHHHHHHHHHcCcc
Q 043276 78 QTRV-FILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 78 ~arV-iIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
..++ .|++.+...+..+++.+++.|+.
T Consensus 187 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 187 YPDLKAVVSFGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp CTTEEEEEESSTTHHHHHHHHHHHTTCT
T ss_pred CCCCCEEEEeCCcchhHHHHHHHhcCCC
Confidence 3333 34455667788899999999964
No 196
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=69.47 E-value=16 Score=34.02 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=50.0
Q ss_pred cEEEEEEEeCcccc---chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCeEEEEEcCh
Q 043276 22 REAVPIYVDNQYGE---ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHMLP 88 (829)
Q Consensus 22 ~~V~iI~~dd~yG~---~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~arViIv~~~~ 88 (829)
-+|+||...|+-|+ .....|.+.|++.|..+.....++++ .+.+.+.+.+..+. ++++||..+..
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 47899998888773 34578889999999998887777755 56788888876654 68999888653
No 197
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=69.30 E-value=13 Score=38.11 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=42.8
Q ss_pred ccchhHHHHHHHhhhcC--ccccccchhH------HHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 472 QVGTSFWFSFSTMVFSQ--RERVISNLAR------FVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R------~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
++.+++||++.++...| ...|.+..+| ++.++|+++++.+.++-.+.+.+.+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998776 3356666665 699999999999999888887777654
No 198
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=69.25 E-value=6.8 Score=42.01 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 88 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-- 88 (829)
.+.++++.+|.+++.||+...-+..+..+.+.+.|++.|+.+.....+..+.+.+.+.+.+..+++.++++||-.+..
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 356677778989999888554444457889999999999876544445556666778888888888889999987654
Q ss_pred hHHHHHHHHHH
Q 043276 89 SLGSRIFEKAN 99 (829)
Q Consensus 89 ~~~~~i~~~a~ 99 (829)
-++..+.....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 199
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=69.12 E-value=21 Score=35.82 Aligned_cols=95 Identities=7% Similarity=-0.059 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHc------CCcE--EEEEEEeC--ccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHh
Q 043276 6 SSQVGAITAIIKAF------GWRE--AVPIYVDN--QYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKL 74 (829)
Q Consensus 6 ~~q~~ai~~ll~~f------gW~~--V~iI~~dd--~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~l 74 (829)
...+..+++.+... |.++ +++|.... .....-.+.+.+++++. |+.+... +....+.+.-.+.+.++
T Consensus 108 ~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~l 185 (290)
T 2fn9_A 108 YYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQ--QSAEFDRDTAYKVTEQI 185 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEE--EECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEe--ccCCCCHHHHHHHHHHH
Confidence 34456666766555 8999 66665432 23455677788899998 8776432 21222233333444444
Q ss_pred hc--CCCeEEEEEcChhHHHHHHHHHHHcCc
Q 043276 75 FT--MQTRVFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 75 k~--~~arViIv~~~~~~~~~i~~~a~~~gm 103 (829)
.+ ...++|+ +.+...+..+++.+++.|+
T Consensus 186 l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 186 LQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 32 2345444 5667778889999999996
No 200
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=68.88 E-value=16 Score=38.07 Aligned_cols=103 Identities=11% Similarity=0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEE
Q 043276 7 SQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIL 84 (829)
Q Consensus 7 ~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv 84 (829)
.-+..+++.|...|.+++++|....+ ....-.+.+.+++++.|+.... .+....+.+.-...+.++.+...- .|+
T Consensus 170 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--v~~~~~~~~~~~~~~~~ll~~~~~-ai~ 246 (348)
T 3bil_A 170 PGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQL--VFLGGYEQSVGFEGATKLLDQGAK-TLF 246 (348)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCE--EECCCSSHHHHHHHHHHHHHTTCS-EEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccE--EEcCCCCHHHHHHHHHHHHcCCCC-EEE
Confidence 33456667776679999999975432 3345577788899999873222 122222233333344444332222 566
Q ss_pred EcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 85 HMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 85 ~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
+++...+..++..+++.|+..++-+-|+
T Consensus 247 ~~nD~~A~g~~~al~~~G~~vP~disvv 274 (348)
T 3bil_A 247 AGDSMMTIGVIEACHKAGLVIGKDVSVI 274 (348)
T ss_dssp ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred EcChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 6777788899999999998655544444
No 201
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=68.58 E-value=31 Score=33.70 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEe--C-ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVD--N-QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~d--d-~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
+..-+..+++.+...|.+++++|... + .....-.+.+.+++++.|+.+.. +....+.+.-.+.+.++.+.....
T Consensus 99 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~a 175 (255)
T 1byk_A 99 DEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTA 175 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCE
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce---eecCCccchHHHHHHHHhcCCCCE
Confidence 34445566777767799999999854 2 23345577888999999976432 222223333334444444434444
Q ss_pred EEEEcChhHHHHHHHHHHHcCc
Q 043276 82 FILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm 103 (829)
|++++...+..+++.+++.|+
T Consensus 176 -i~~~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 176 -LLCATDTLALGASKYLQEQRI 196 (255)
T ss_dssp -EEESSHHHHHHHHHHHHHTTC
T ss_pred -EEEeChHHHHHHHHHHHHcCC
Confidence 455677788899999999996
No 202
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=68.54 E-value=17 Score=36.97 Aligned_cols=104 Identities=8% Similarity=-0.068 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcC---CcEEEEEEEeCc--cccchHHHHHHHHHhCCc-eeeeEEecCCCCChhHHHHHHHHhhc---
Q 043276 6 SSQVGAITAIIKAFG---WREAVPIYVDNQ--YGEELIPSLTDALQAIDT-RVPYRSVISPLATDDQIEKELYKLFT--- 76 (829)
Q Consensus 6 ~~q~~ai~~ll~~fg---W~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi-~I~~~~~i~~~~~~~~~~~~l~~lk~--- 76 (829)
..-+..+++.|...| -+++++|....+ ....-.+.+.+++++.|. .+.. .+....+.+.-.+.+.++.+
T Consensus 110 ~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~ 187 (306)
T 2vk2_A 110 ILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIR--SQSGDFTRSKGKEVMESFIKAEN 187 (306)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCCeEEEE--eccCCCcHHHHHHHHHHHHHhCC
Confidence 334455666665555 789999985432 334556778889998886 3222 11222223333333444332
Q ss_pred --CCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 77 --MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 77 --~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
....+ |++.+...+..+++.+++.|+..++-+-|+
T Consensus 188 ~~~~~~a-i~~~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 188 NGKNICM-VYAHNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp TTTTCCE-EEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred CCCCeeE-EEECCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 23444 445667778889999999998655444443
No 203
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.15 E-value=26 Score=36.35 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHHcC------C-cEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHh
Q 043276 4 NDSSQVGAITAIIKAFG------W-REAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL 74 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fg------W-~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l 74 (829)
++...+..+++.|...| - +++++|..... ....-.+.+.+++++.|. +.....+....+.+.-.+.+.++
T Consensus 121 D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (350)
T 3h75_A 121 DDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQL 199 (350)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHH
Confidence 34445566677765555 4 78999874422 334557788899999886 32222232333333444444444
Q ss_pred hcCCCeE-EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 75 FTMQTRV-FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 75 k~~~arV-iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.+...++ .|++++...+..+++.+++.|+..++.+-|.
T Consensus 200 L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vv 238 (350)
T 3h75_A 200 LKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFS 238 (350)
T ss_dssp HHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 3333333 3455677788899999999997655544444
No 204
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=68.07 E-value=27 Score=35.20 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCC-------CChhHHHHHHHHhhcCCCeE
Q 043276 9 VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~-------~~~~~~~~~l~~lk~~~arV 81 (829)
+.++++.++..|-++|+|+. .|.....+.+.+.+++.|+.+......... .+.+.+.+.+.++...++++
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 46666777778889999996 566666678889999999987654443221 12234555556665566777
Q ss_pred EEEE-cCh
Q 043276 82 FILH-MLP 88 (829)
Q Consensus 82 iIv~-~~~ 88 (829)
||+- |..
T Consensus 211 IvLg~CT~ 218 (273)
T 2xed_A 211 LVISCAVQ 218 (273)
T ss_dssp EEEESSSS
T ss_pred EEEcCCCC
Confidence 7776 643
No 205
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=67.79 E-value=13 Score=37.39 Aligned_cols=101 Identities=8% Similarity=-0.039 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCe
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTR 80 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~ar 80 (829)
+..-+..+++.|. .|-+++++|....+ ....-.+.+.+++++.|+.+... ..... . + .+.+.++.+. ...
T Consensus 107 ~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~-~--~-~~~~~~~l~~~~~~~ 180 (277)
T 3hs3_A 107 NTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPEN-N--P-YISAQSALNKSNQFD 180 (277)
T ss_dssp HHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSS-C--H-HHHHHHHHHTGGGCS
T ss_pred hHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCC-c--h-HHHHHHHHcCCCCCC
Confidence 3344555666666 89999999985432 33456778889999999887654 33222 1 1 3334443332 333
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
. |++.+...+..+++.+++.|+..++-+-|+
T Consensus 181 a-i~~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 181 A-IITVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp E-EECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred E-EEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 3 455677788899999999998656555554
No 206
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=65.64 E-value=23 Score=35.79 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEecc
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDT 393 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~ 393 (829)
..++..+.+.+|+++++ ... +-.-+...|.+|++|+.+...
T Consensus 32 ~~i~~~~Le~~G~~Ve~--~~~---------~~~~~~~AL~~G~iD~~~e~w 72 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEI--FSV---------TTSIMYQYLASGKIDGTVSSW 72 (280)
T ss_dssp HHHHHHHHHHTTEEEEE--EEC---------CHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHCCCceEE--EEC---------CcHHHHHHHHCCCCcEEEecc
Confidence 45677777788976655 332 236678999999999987543
No 207
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=65.57 E-value=5.9 Score=40.43 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCC---CCChhH-H-HHHHHHhhc
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISP---LATDDQ-I-EKELYKLFT 76 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~---~~~~~~-~-~~~l~~lk~ 76 (829)
++..-+..+++.|...|-+++++|...... ...-.+.+.+++++.|+.+.....+.. ..+.+. . .+.+.++.+
T Consensus 114 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 193 (301)
T 3miz_A 114 DDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLK 193 (301)
T ss_dssp CHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHc
Confidence 344455666777877899999999855433 345577788899998876532222211 111111 1 133333333
Q ss_pred C--CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 77 M--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 77 ~--~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
. .... |++++...+..++..+++.|+..++-+-|+
T Consensus 194 ~~~~~~a-i~~~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 194 QDDRPTA-IMSGNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp STTCCSE-EEESSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred CCCCCcE-EEECCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 3 3343 456677788899999999997655544444
No 208
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=65.39 E-value=19 Score=38.13 Aligned_cols=87 Identities=9% Similarity=-0.017 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCcEEEEEEEeCcccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP- 88 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~- 88 (829)
.+.++++.+| +++.||+..+.+.. +..+.+.+.|++.|+++.....+..+.+.+.+.+.+..+++.+.++||-.+..
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 109 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 109 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 3455667788 99999986645443 46889999999999876544455566667788888888888899999988664
Q ss_pred -hHHHHHHHHH
Q 043276 89 -SLGSRIFEKA 98 (829)
Q Consensus 89 -~~~~~i~~~a 98 (829)
-++..+....
T Consensus 110 v~D~AK~iA~~ 120 (371)
T 1o2d_A 110 PMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3444444443
No 209
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=64.99 E-value=33 Score=35.62 Aligned_cols=102 Identities=7% Similarity=-0.055 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCeEEE
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFI 83 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~arViI 83 (829)
-+..+++.|...|.+++++|...... ...-.+.+.+++++.|+.+.... ....+.+.-...+.++.+. .... |
T Consensus 166 ~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~a-i 242 (349)
T 1jye_A 166 GTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTA-M 242 (349)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSE-E
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccccc--cCCCChHHHHHHHHHHHhCCCCCCE-E
Confidence 34445566656699999999854332 34456778889999997643321 1122222222333333332 2343 4
Q ss_pred EEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 84 LHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 84 v~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
++++...+..++..+++.|+..++-+-|+
T Consensus 243 ~~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 243 LVANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp EESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred EECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 55667788899999999998666555554
No 210
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=64.45 E-value=30 Score=35.71 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC-CeE
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRV 81 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~-arV 81 (829)
+..-+..+++.|...|-+++++|....+. ...-.+.+.+++++.|+. ..... ...+.+.-.+.+.++.+.. ..
T Consensus 158 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~--~~~~~-~~~~~~~~~~~~~~ll~~~~~~- 233 (333)
T 3jvd_A 158 DEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE--VTFHF-GHYSVESGEEMAQVVFNNGLPD- 233 (333)
T ss_dssp HHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE--EEEEE-CCSSHHHHHHHHHHHHHTCCCS-
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC--EEEec-CCCCHHHHHHHHHHHhcCCCCc-
Confidence 34455666777777899999999865332 345678888999999987 11111 2223333344444443332 34
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.|++++...+..++..+++.|+..++-+-|+
T Consensus 234 ai~~~nd~~A~g~~~al~~~G~~vP~disvi 264 (333)
T 3jvd_A 234 ALIVASPRLMAGVMRAFTRLNVRVPHDVVIG 264 (333)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 3556777788899999999998655544444
No 211
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=64.31 E-value=13 Score=37.15 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEecc
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDT 393 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~ 393 (829)
+...|+..+.+.+|+++++ .+. +-.-+...|.+|++|+.+...
T Consensus 16 i~~~i~~~~Le~~G~~Ve~--~~~---------~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKT--TAL---------DNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EEC---------CHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EEC---------ChHHHHHHHHCCCCeEEEccc
Confidence 3457788888888876655 332 346788999999999987543
No 212
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=64.24 E-value=28 Score=36.26 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=50.0
Q ss_pred CccchhHHHHHHHhhhcC-cc-ccc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 043276 471 HQVGTSFWFSFSTMVFSQ-RE-RVI--SNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQ 529 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~~-~~~--s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~ 529 (829)
.++..+|||++.++...| +. .|. +..+|+++.+-.+.++++.+.-++-+.+-++.+...
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 468899999999999777 32 453 678999999999999999999999999999887754
No 213
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=63.83 E-value=38 Score=34.42 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=61.8
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceE
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYT 611 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~ 611 (829)
+.++++| .+++|++..-...+.||++.+.+-.-+....+.|-. -..|- .|++++-.....-+.++ .|.
T Consensus 116 ~~~~~~l--~g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~Gl----ADaIvDivsTG~TLraN---gL~ 183 (299)
T 1h3d_A 116 WDGPLSL--NGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGL----ADAICDLVSTGATLEAN---GLR 183 (299)
T ss_dssp CCCGGGG--TTCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTS----CSEEEEEESSCHHHHHT---TEE
T ss_pred CCChHHh--CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----cceEEecccCHHHHHHC---CCE
Confidence 3567777 478999887788899998877764444444455422 34466 67777665544444443 366
Q ss_pred EeCcccccCCceeeecCCC--Cc-hhhHHHHHHhhh
Q 043276 612 MVEPTFKTAGFGFAFPLHS--PL-VHDVSKAILNVT 644 (829)
Q Consensus 612 ~v~~~~~~~~~~~~~~k~s--pl-~~~in~~il~l~ 644 (829)
.++..+. ..-.+..+|.+ +. .+.++..+.++.
T Consensus 184 ~ie~I~~-SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 184 EVEVIYR-SKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEEEEE-ECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EeEEEEe-eEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 6654444 44556667776 22 245666776664
No 214
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=62.71 E-value=28 Score=33.69 Aligned_cols=77 Identities=6% Similarity=-0.036 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCC-------CChhHHHHHHHHhhcC--CC
Q 043276 9 VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTM--QT 79 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~-------~~~~~~~~~l~~lk~~--~a 79 (829)
..++++-++..|=++|+++. .|+....+.+.+.+++.|+.+......... .+.+.+.+.+.++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 56777777778889999996 566666678888999999887554333221 1123344555555545 66
Q ss_pred eEEEEEcCh
Q 043276 80 RVFILHMLP 88 (829)
Q Consensus 80 rViIv~~~~ 88 (829)
++||+-|..
T Consensus 173 daIvLgCT~ 181 (223)
T 2dgd_A 173 DAVYIACTA 181 (223)
T ss_dssp SEEEECCTT
T ss_pred CEEEEeCCc
Confidence 777666543
No 215
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=62.67 E-value=25 Score=35.54 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=42.4
Q ss_pred CCCcEEEE-eCchHHH----HHHhcCCCccceeecC-ChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC
Q 043276 541 RGDNVGYQ-KGSFVLG----ILKQLGFDERKLVVYN-SHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH 606 (829)
Q Consensus 541 ~~~~vg~~-~~s~~~~----~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 606 (829)
.|++|++. .|+..+. +|++.++ ..+++... +..+...++.+|+ +||.+...+++.....+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhhC
Confidence 58899975 5555443 3445566 44555444 6889999999999 999888778877655443
No 216
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=62.46 E-value=18 Score=36.72 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHh-hcC--CC
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-FTM--QT 79 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l-k~~--~a 79 (829)
+..-+..+++.|...|-+++++|....+. ...-.+.+.+++++.|+.+.. .+... .+.-.+.+.++ .+. ..
T Consensus 128 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~--~~~~~~~~~~~~l~~~~~~ 203 (305)
T 3huu_A 128 NIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS--MNDLRDFIKQYCIDASHMP 203 (305)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS--HHHHHHHC--------CCC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC--cHHHHHHHHHhhhcCCCCC
Confidence 34445566677777799999999865443 345577888999999987654 22111 11122334444 332 33
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
.. |++++...+..+++.+++.|+..++-+-|+
T Consensus 204 ~a-i~~~nd~~A~g~~~al~~~g~~vP~di~vi 235 (305)
T 3huu_A 204 SV-IITSDVMLNMQLLNVLYEYQLRIPEDIQTA 235 (305)
T ss_dssp SE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CE-EEECChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 33 456777888899999999998655544333
No 217
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=62.15 E-value=45 Score=33.20 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHH-HHcC-CcEEEEEEEeCcc--ccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 7 SQVGAITAII-KAFG-WREAVPIYVDNQY--GEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 7 ~q~~ai~~ll-~~fg-W~~V~iI~~dd~y--G~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
.-+..+++.| +.+| -+++++|...... ...-.+.+.+++++. |+.+.... ....+.+.-.+.+.++.+...++
T Consensus 107 ~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~ 184 (283)
T 2ioy_A 107 KGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQ--AADFDRSKGLSVMENILQAQPKI 184 (283)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeec--cCCCCHHHHHHHHHHHHHhCCCc
Confidence 3355566666 4446 9999999854322 244567788889888 87664322 22222333334444443322222
Q ss_pred -EEEEcChhHHHHHHHHHHHcCc
Q 043276 82 -FILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm 103 (829)
.|++++...|..+++.+++.|+
T Consensus 185 ~ai~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 185 DAVFAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTC
T ss_pred cEEEECCchHHHHHHHHHHHCCC
Confidence 4566677788899999999996
No 218
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=61.91 E-value=10 Score=40.52 Aligned_cols=74 Identities=8% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 12 ITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 12 i~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
+.++++.+| +++.||++..-+. ...+.+.+.|++ |+.+.+ ..+....+.+.+.+.+..+++.++++||-.+...
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 117 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGK 117 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred HHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH
Confidence 456788899 9999988555544 367788888998 988744 4556666677788888888888899999998753
No 219
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=61.69 E-value=29 Score=34.48 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc-c--ccchHHHHHHHHHhCCceeeeEEecCCC--CChhHHHHHHHHhhc-C
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ-Y--GEELIPSLTDALQAIDTRVPYRSVISPL--ATDDQIEKELYKLFT-M 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~-y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~--~~~~~~~~~l~~lk~-~ 77 (829)
++..-+..+++.|...|-+++++|..... + ...-.+.+.+++++.+. + .+... ...+........|.. .
T Consensus 106 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~ 180 (276)
T 3jy6_A 106 DNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-L----EVSESSYNHSEVHQRLTQLITQND 180 (276)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-E----EECSSSCCHHHHHHHHHHHHHSSS
T ss_pred ChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-E----EEeccccCCcHHHHHHHHHHhcCC
Confidence 44555667777887789999999986654 2 23455667777777653 1 12211 112233333444433 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
... .|++++...+..+++.+++.|+..++-+-|++
T Consensus 181 ~~~-ai~~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 181 QKT-VAFALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp SCE-EEEESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred CCc-EEEEeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 333 34556777888999999999987666555553
No 220
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=61.41 E-value=7.5 Score=41.71 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHhCCCcEEEEeCchHHHHHHh-------cCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 528 LQPTITDVNLLIKRGDNVGYQKGSFVLGILKQ-------LGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 528 ~~~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
-...|++++||. | +|++.++....+.+. .+. ..+++.|++..+++.+|.+|+ ++|++.+..+..
T Consensus 24 kds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~----vDAiv~~~~~~~ 94 (398)
T 2xxp_A 24 ADSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGE----TKAIVLNSVFEN 94 (398)
T ss_dssp TTCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTS----CSCEEEEHHHHH
T ss_pred CCCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCC----CCEEEEchHHHH
Confidence 446899999994 5 999988766654432 122 246789999999999999999 999999988877
Q ss_pred HHHhc
Q 043276 601 LLIGQ 605 (829)
Q Consensus 601 ~~~~~ 605 (829)
.+...
T Consensus 95 ~le~~ 99 (398)
T 2xxp_A 95 IIELE 99 (398)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76543
No 221
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=61.19 E-value=32 Score=34.39 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHH-c-CCc-----EEEEEEEeC--ccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHh
Q 043276 5 DSSQVGAITAIIKA-F-GWR-----EAVPIYVDN--QYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKL 74 (829)
Q Consensus 5 D~~q~~ai~~ll~~-f-gW~-----~V~iI~~dd--~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~l 74 (829)
+...+..+++.+.. . |-+ ++++|.... .....-.+.+.+++++. |+.+.... ....+.+.-.+.+.++
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ 189 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSV--SGNYDPVTSERVMRQV 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeec--cCCCCHHHHHHHHHHH
Confidence 44455556666644 5 656 999997433 23345677888999998 88775432 2222333444445554
Q ss_pred hcCCCeE-EEEEcChhHHHHHHHHHHHcCcc
Q 043276 75 FTMQTRV-FILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 75 k~~~arV-iIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
.+...++ .|++++...+..+++.+++.|+.
T Consensus 190 l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 190 IDSGIPFDAVYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 4333332 34556777888999999999963
No 222
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=61.17 E-value=15 Score=36.70 Aligned_cols=105 Identities=9% Similarity=0.004 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
++..-+..+++.+...|-+++++|....+ ....-.+.+.+++++.|+.+.. .. ....+.+.-.+.+.+ ......
T Consensus 105 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~-~~~~~~~~~~~~l~~--~~~~~a 180 (277)
T 3e61_A 105 NHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LE-ATLLDNDKKFIDLIK--ELSIDS 180 (277)
T ss_dssp -HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EE-GGGGGSHHHHHHHHH--HHTCCE
T ss_pred chHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-ee-cCCCCHHHHHHHhhc--CCCCCE
Confidence 44455566777777789999999985432 3345577888999999987654 22 211111222222222 123444
Q ss_pred EEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 82 FILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
|++.+...+..++..+++.|+..++-+-|++
T Consensus 181 -i~~~~d~~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 181 -IICSNDLLAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp -EEESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred -EEECCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 4556777888999999999986665555553
No 223
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=60.87 E-value=40 Score=34.62 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=63.1
Q ss_pred hHHHHHHH----HHHHHHcCC-cEEEEEEEeC-ccccchHHHHHHHHHhCCceeeeEEecCCCC-ChhHHHHHHHHhhcC
Q 043276 5 DSSQVGAI----TAIIKAFGW-REAVPIYVDN-QYGEELIPSLTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTM 77 (829)
Q Consensus 5 D~~q~~ai----~~ll~~fgW-~~V~iI~~dd-~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~-~~~~~~~~l~~lk~~ 77 (829)
|..++..+ +..+..-|- ++|++|.... .........+.+.+++.|..+.....+.... +.+.-......+.+.
T Consensus 108 d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~ 187 (318)
T 2fqx_A 108 GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDS 187 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHC
Confidence 34444444 456666687 8999997432 2234456778888888886544333332221 222222334444445
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
++++| ++.....+.-+++.+++.|+. ++-+|+++
T Consensus 188 ~~daI-~~~~d~~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 188 GVNVI-FQVAGGTGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp TCCEE-EEECGGGHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CCcEE-EECCCCCchHHHHHHHhhhhc-cCCcEEEE
Confidence 67664 455566788889999998876 55566653
No 224
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=60.85 E-value=26 Score=36.04 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHc--CCcEEEEEEEeCc--cccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhc--C
Q 043276 5 DSSQVGAITAIIKAF--GWREAVPIYVDNQ--YGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFT--M 77 (829)
Q Consensus 5 D~~q~~ai~~ll~~f--gW~~V~iI~~dd~--yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~ 77 (829)
+...+..+++.+... |-+++++|..+.+ ....-.+.+.+++++. |+.+... +....+.+.-...+.++.+ .
T Consensus 110 ~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~--~~~~~~~~~~~~~~~~ll~~~~ 187 (325)
T 2x7x_A 110 NYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK--ADAAWERGPAEIEMDSMLRRHP 187 (325)
T ss_dssp HHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE--EECTTSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee--ecCCCCHHHHHHHHHHHHHhCC
Confidence 444555666666543 9999999985432 3445577888899998 8776432 2222223333334444432 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCc
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm 103 (829)
....| ++.+...+..++..+++.|+
T Consensus 188 ~~~aI-~~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 188 KIDAV-YAHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp CCCEE-EESSTTHHHHHHHHHHHTTC
T ss_pred CCCEE-EECCCchHHHHHHHHHHcCC
Confidence 34544 45666678888999999995
No 225
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=60.60 E-value=41 Score=33.87 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=58.7
Q ss_pred HHHHHHHHHHc--CCcEEEEEEEeCcc-ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEE
Q 043276 9 VGAITAIIKAF--GWREAVPIYVDNQY-GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILH 85 (829)
Q Consensus 9 ~~ai~~ll~~f--gW~~V~iI~~dd~y-G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~ 85 (829)
+...++++... |-+++++|+...+. +....+.+.+++++.|+.+....... .++..+.+.++.. +..+|++
T Consensus 119 ~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~----~~~~~~~~~~l~~-~~dai~~- 192 (295)
T 3lft_A 119 AQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS----TNEIASTVTVMTS-KVDAIWV- 192 (295)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS----GGGHHHHHHHHTT-TCSEEEE-
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC----HHHHHHHHHHHHh-cCCEEEE-
Confidence 34455667666 99999999976543 45567888999999999876543321 3356666777753 5565555
Q ss_pred cChhHHHHHHHHHHHcCc
Q 043276 86 MLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 86 ~~~~~~~~i~~~a~~~gm 103 (829)
.+...+...+..+.+.+.
T Consensus 193 ~~D~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 193 PIDNTIASGFPTVVSSNQ 210 (295)
T ss_dssp CSCHHHHHTHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHH
Confidence 444556566677777663
No 226
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.29 E-value=9.1 Score=38.71 Aligned_cols=109 Identities=9% Similarity=0.118 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc-cccchHHHHHHHHHhCCceeeeEEecCCCCCh--hHHHHHHHHhhcCC--
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ-YGEELIPSLTDALQAIDTRVPYRSVISPLATD--DQIEKELYKLFTMQ-- 78 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~-yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~--~~~~~~l~~lk~~~-- 78 (829)
++..-+..+++.|...|-+++++|..... ....-.+.+.+++++.|+.+.....+...... ....+.+.++.+..
T Consensus 120 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 199 (298)
T 3tb6_A 120 DDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSK 199 (298)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCC
Confidence 34445566777787789999999985443 23455777888999998765322111111101 01123333333222
Q ss_pred --CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 79 --TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 79 --arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
... |++.+...+..++..+++.|+..++-+-|++
T Consensus 200 ~~~~a-i~~~~d~~a~g~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 200 HMPTA-ILCYNDEIALKVIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp SCCSE-EECSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred CCCeE-EEEeCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 344 4456777888999999999986665555553
No 227
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=59.49 E-value=53 Score=32.99 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHH------------cCCcEEEEEEEeC--ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHH
Q 043276 5 DSSQVGAITAIIKA------------FGWREAVPIYVDN--QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKE 70 (829)
Q Consensus 5 D~~q~~ai~~ll~~------------fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~ 70 (829)
+...+..+++.+.. .|-++|++|.... .....-.+.+.+++++.|+.+.....+....+.+.-...
T Consensus 112 ~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (309)
T 2fvy_A 112 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDK 191 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHH
Confidence 34445556666644 6888999998542 334556777889999999765433222222233333344
Q ss_pred HHHhhcC----CCeEEEEEcChhHHHHHHHHHHHcC
Q 043276 71 LYKLFTM----QTRVFILHMLPSLGSRIFEKANEIG 102 (829)
Q Consensus 71 l~~lk~~----~arViIv~~~~~~~~~i~~~a~~~g 102 (829)
+.++.+. ..++ |++++...+..+++.+++.|
T Consensus 192 ~~~~l~~~~~~~~~a-i~~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 192 MDAWLSGPNANKIEV-VIANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHTSTTGGGCCE-EEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCccE-EEECCchhHHHHHHHHHHcC
Confidence 5554433 3444 44566777888999999987
No 228
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=59.30 E-value=21 Score=37.43 Aligned_cols=107 Identities=7% Similarity=0.081 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEe-------------------CccccchHHHHHHHHHhCCceeeeEEec-CCCCCh
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVD-------------------NQYGEELIPSLTDALQAIDTRVPYRSVI-SPLATD 64 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~d-------------------d~yG~~~~~~l~~~l~~~gi~I~~~~~i-~~~~~~ 64 (829)
+..-+..+++.|...|-+++++|... ......-.+.+.+++++.|+.+.....+ ....+.
T Consensus 173 ~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~ 252 (366)
T 3h5t_A 173 NRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNR 252 (366)
T ss_dssp HHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCH
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCH
Confidence 34445566677777899999999832 1223445677888999998764321111 111223
Q ss_pred hHHHHHHHHhhcC--CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 65 DQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 65 ~~~~~~l~~lk~~--~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
+.-...+.++.+. .... |++++...|..++..+++.|+..++-+-|+
T Consensus 253 ~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~~vP~disvi 301 (366)
T 3h5t_A 253 QHNFEVAKELLETHPDLTA-VLCTVDALAFGVLEYLKSVGKSAPADLSLT 301 (366)
T ss_dssp HHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCCCCcE-EEECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 2333334443322 3343 455677788899999999998655544443
No 229
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=59.10 E-value=24 Score=35.33 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHH--cCCcEEEEEEEeCcc--ccchHHHHHHHHHhC-CceeeeEEecCCCC-ChhHHHHHHHHhhcC
Q 043276 4 NDSSQVGAITAIIKA--FGWREAVPIYVDNQY--GEELIPSLTDALQAI-DTRVPYRSVISPLA-TDDQIEKELYKLFTM 77 (829)
Q Consensus 4 sD~~q~~ai~~ll~~--fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~-gi~I~~~~~i~~~~-~~~~~~~~l~~lk~~ 77 (829)
++...+..+++.+.. -|-+++++|....+. ...-.+.+.+++++. |+++.....+.... +.+.....+.++.+.
T Consensus 106 D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (291)
T 3l49_A 106 NNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTK 185 (291)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHh
Confidence 344456667777766 899999999744332 234567788899988 67654332222221 122333344444332
Q ss_pred -----CCeEEEEEcChhHHHHHHHHHHHcCcc
Q 043276 78 -----QTRVFILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 78 -----~arViIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
...+| ++.+...+..+++.+++.|+.
T Consensus 186 ~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 186 YPNEGDVGAI-WACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp CCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCcCEE-EECCCchHHHHHHHHHHcCCC
Confidence 34444 566777888899999999964
No 230
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=59.06 E-value=54 Score=35.20 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=58.6
Q ss_pred cEEEEEEEeCccc--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh------hHHHH
Q 043276 22 REAVPIYVDNQYG--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGSR 93 (829)
Q Consensus 22 ~~V~iI~~dd~yG--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~------~~~~~ 93 (829)
++|+|+| ++.|| +..++.+.+.+.+.|+.+......... ..++...+..+. +++.+|+-+.. +....
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~--~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE--RPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC--CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHH
Confidence 4799998 78888 567899999999999987654443333 224555566654 45566665443 34555
Q ss_pred HHHHHHHcCccccCeEEEEcCcccc
Q 043276 94 IFEKANEIGLMNKGCVWIMTDGMTN 118 (829)
Q Consensus 94 i~~~a~~~gm~~~~~vwI~t~~~~~ 118 (829)
++............-..+.+-+|.+
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHhcccCCCEEEEEECCCCCc
Confidence 6666666554333345566778874
No 231
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=58.30 E-value=17 Score=36.81 Aligned_cols=56 Identities=9% Similarity=0.229 Sum_probs=48.1
Q ss_pred cCccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 470 RHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
..++.+++||++.++...| .-.|.+..+|++.+++.++++.+...+.+++...+..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999877 3478999999999999999999999999988876644
No 232
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.02 E-value=56 Score=33.27 Aligned_cols=97 Identities=3% Similarity=-0.058 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHH---cCCcEEEEEEEe--CccccchHHHHHHHHHhC--CceeeeEEecCCCCChhHHHHHHHHhhc
Q 043276 4 NDSSQVGAITAIIKA---FGWREAVPIYVD--NQYGEELIPSLTDALQAI--DTRVPYRSVISPLATDDQIEKELYKLFT 76 (829)
Q Consensus 4 sD~~q~~ai~~ll~~---fgW~~V~iI~~d--d~yG~~~~~~l~~~l~~~--gi~I~~~~~i~~~~~~~~~~~~l~~lk~ 76 (829)
++...+..+++.|.. .|-+++++|... +.......+.+.++|++. ++.+..... . ..+.+.-.+.+.++.+
T Consensus 108 D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ll~ 185 (316)
T 1tjy_A 108 TPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF-G-YNDATKSLQTAEGIIK 185 (316)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE-C-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc-C-CCCHHHHHHHHHHHHH
Confidence 334455666666644 478999999743 233455567777888765 555543221 1 2223333444444443
Q ss_pred CCCeE-EEEEcChhHHHHHHHHHHHcC
Q 043276 77 MQTRV-FILHMLPSLGSRIFEKANEIG 102 (829)
Q Consensus 77 ~~arV-iIv~~~~~~~~~i~~~a~~~g 102 (829)
...++ .|++.+...+.-+++.+++.|
T Consensus 186 ~~~~~~aI~~~nD~~A~g~~~al~~~G 212 (316)
T 1tjy_A 186 AYPDLDAIIAPDANALPAAAQAAENLK 212 (316)
T ss_dssp HCSSCCEEEECSTTHHHHHHHHHHHTT
T ss_pred hCCCCCEEEECCCccHHHHHHHHHHcC
Confidence 32333 344556677888888889988
No 233
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.82 E-value=27 Score=35.46 Aligned_cols=87 Identities=8% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHHHHHHHc--CCcEEEEEEEeCc-cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEc
Q 043276 10 GAITAIIKAF--GWREAVPIYVDNQ-YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 86 (829)
Q Consensus 10 ~ai~~ll~~f--gW~~V~iI~~dd~-yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~ 86 (829)
...++++... |.+++++|+...+ .+....+.+.+++++.|+.+...... +.++..+.+.++.. ...+|++ .
T Consensus 127 ~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~-~ 200 (302)
T 2qh8_A 127 EQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYA-L 200 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEE-C
T ss_pred HHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEE-C
Confidence 4455677665 9999999996543 35566788899999999987654332 13456666777653 4555554 3
Q ss_pred ChhHHHHHHHHHHHcC
Q 043276 87 LPSLGSRIFEKANEIG 102 (829)
Q Consensus 87 ~~~~~~~i~~~a~~~g 102 (829)
+...+...+..+.+.+
T Consensus 201 ~D~~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 201 IDNTVASAIEGMIVAA 216 (302)
T ss_dssp SCHHHHTTHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHH
Confidence 4444444444444444
No 234
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=57.07 E-value=57 Score=33.90 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=50.4
Q ss_pred CccchhHHHHHHHhhhcC-cc-c--cccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 043276 471 HQVGTSFWFSFSTMVFSQ-RE-R--VISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQ 529 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~~-~--~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~ 529 (829)
.++..+|||++.++...| +. . +.+..+++++.+-.+.++++.+.-++-+.+-++.+...
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 467889999999999777 32 2 35788999999999999999999999999999888765
No 235
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=57.07 E-value=96 Score=29.64 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEecccccccc--ce---ecc--ccccccccce
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNR--SN---YVD--FTLPYTESGV 414 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R--~~---~vd--ft~p~~~~~~ 414 (829)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-....++ .+ .++ -..++....+
T Consensus 16 ~~~~~~F~~~~gi~V~~~~-----------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF-----------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA 83 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE-----------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe-----------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCce
Confidence 3577777777776554422 24567888888 8999998765211111 11 222 1245666667
Q ss_pred EEEEEcc
Q 043276 415 SMIVPIK 421 (829)
Q Consensus 415 ~~vv~~~ 421 (829)
+++++..
T Consensus 84 ~l~~~~~ 90 (237)
T 2hxw_A 84 IILTQKG 90 (237)
T ss_dssp EEEESTT
T ss_pred EEEEeCC
Confidence 7777644
No 236
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=56.94 E-value=92 Score=30.64 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEE
Q 043276 344 VFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVV 390 (829)
Q Consensus 344 ll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~ 390 (829)
.++.++++-|+ +++++.|. .|.....+|.+|++|+..
T Consensus 21 ~v~~~l~k~Gi--~veiv~F~--------dy~~pN~AL~~G~iD~n~ 57 (246)
T 4ef1_A 21 HVKPLLEKEGV--KLEVTTYT--------DYVLPNKALESGDIDANY 57 (246)
T ss_dssp HHHHHHHHTTE--EEEEEECS--------SSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHHhcCC--EEEEEEeC--------CchhHHHHHHCCCCCEEe
Confidence 34556666775 66777776 578888899999999875
No 237
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=56.78 E-value=17 Score=37.15 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCCHHHHHhC-----CCcEEEEeCchHHH----HHH--hcCCCccceeecCChH-----HHHHHHhcCCcCCceeEEEcc
Q 043276 532 ITDVNLLIKR-----GDNVGYQKGSFVLG----ILK--QLGFDERKLVVYNSHE-----ECDELFQKGSANGGIAAAFDE 595 (829)
Q Consensus 532 I~s~~dL~~~-----~~~vg~~~~s~~~~----~l~--~~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~g~~a~~~~ 595 (829)
|+|++||.+. |+.+|+..|+.... .|+ ..+++. +..+.... +...++.+|+ ++++..-
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d--~~~v~~~~~~~~a~~~~A~~~g~----~~v~~~w 178 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKG--FEVVESSEQGMLAQVARAEKSGD----PIVFLGW 178 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTT--CEEECCCHHHHHHHHHHHHHTTC----CCEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCC--ceeccCCHHHHHHHHHHHHHCCC----CEEEEEe
Confidence 7888898522 66788877776543 244 455542 23333322 3357788888 8877776
Q ss_pred hhH
Q 043276 596 IPY 598 (829)
Q Consensus 596 ~~~ 598 (829)
.+.
T Consensus 179 ~p~ 181 (298)
T 2rin_A 179 EPH 181 (298)
T ss_dssp ESS
T ss_pred ccC
Confidence 655
No 238
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=54.49 E-value=21 Score=37.83 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=63.8
Q ss_pred HHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--h
Q 043276 12 ITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--S 89 (829)
Q Consensus 12 i~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~--~ 89 (829)
+.++++.+| +++.||+....+. ...+.+.+.|++.|+.+.+ ..+....+.+.+.+.+..+++.++++||-.+.. -
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 556777788 9999988554433 5678888999999988754 344444445567777777888889999988764 3
Q ss_pred HHHHHHHHHHHcCccccCeEEEEcC
Q 043276 90 LGSRIFEKANEIGLMNKGCVWIMTD 114 (829)
Q Consensus 90 ~~~~i~~~a~~~gm~~~~~vwI~t~ 114 (829)
++..+... ..| -.++-|-|.
T Consensus 100 D~aK~iA~--~~~---~p~i~IPTT 119 (370)
T 1jq5_A 100 DTAKAVAD--ELD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHH--HHT---CEEEEEESS
T ss_pred HHHHHHHH--hcC---CCEEEeccc
Confidence 44444442 234 346666665
No 239
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=54.31 E-value=29 Score=36.39 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=65.1
Q ss_pred HHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--h
Q 043276 12 ITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--S 89 (829)
Q Consensus 12 i~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~--~ 89 (829)
+.++++.+|.+++.+|+...-+. ...+.+.+.|++.|+.+...... +..+.+.+.+. ..+++.+.++||-.+.. -
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~ 101 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKIPAEVDALIGIGGGKAI 101 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTSCTTCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhhhcCCCEEEEECChHHH
Confidence 56778888999999998555443 56788888899999876543323 33455677777 77888889999988764 3
Q ss_pred HHHHHHHHHHHcCccccCeEEEEcCccc
Q 043276 90 LGSRIFEKANEIGLMNKGCVWIMTDGMT 117 (829)
Q Consensus 90 ~~~~i~~~a~~~gm~~~~~vwI~t~~~~ 117 (829)
++..+.. ...| -.++-|-|..-+
T Consensus 102 D~aK~vA--~~~~---~p~i~IPTT~~t 124 (354)
T 3ce9_A 102 DAVKYMA--FLRK---LPFISVPTSTSN 124 (354)
T ss_dssp HHHHHHH--HHHT---CCEEEEESCCSS
T ss_pred HHHHHHH--hhcC---CCEEEecCcccC
Confidence 4444444 2233 346666665543
No 240
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.04 E-value=82 Score=26.04 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCCeE
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRV 81 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~arV 81 (829)
||....+-|+.-++.-|- .|+++|+|.+--+. .+.| +++++.|+.+-.. .+.++++..+..|-. .+-+|
T Consensus 10 sdpeilkeivreikrqgv-rvvllysdqdekrr-rerl-eefekqgvdvrtv------edkedfrenireiwerypqldv 80 (162)
T 2l82_A 10 SDPEILKEIVREIKRQGV-RVVLLYSDQDEKRR-RERL-EEFEKQGVDVRTV------EDKEDFRENIREIWERYPQLDV 80 (162)
T ss_dssp SCHHHHHHHHHHHHHTTC-EEEEEECCSCHHHH-HHHH-HHHHTTTCEEEEC------CSHHHHHHHHHHHHHHCTTCCE
T ss_pred CCHHHHHHHHHHHHhCCe-EEEEEecCchHHHH-HHHH-HHHHHcCCceeee------ccHHHHHHHHHHHHHhCCCCcE
Confidence 566666777777787776 47788988764322 3333 4578889776432 124566666655432 33344
Q ss_pred EEE--EcChhHHHHHHHHHHHcCc
Q 043276 82 FIL--HMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 82 iIv--~~~~~~~~~i~~~a~~~gm 103 (829)
+++ .-.-+-...++.+|++.|.
T Consensus 81 vvivttddkewikdfieeakergv 104 (162)
T 2l82_A 81 VVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCcHHHHHHHHHHHHhcCc
Confidence 433 3344677889999999984
No 241
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=53.50 E-value=40 Score=31.08 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=50.0
Q ss_pred cCCcEEEEEEEeCcccc---chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc-CCCeEEEEEcCh
Q 043276 19 FGWREAVPIYVDNQYGE---ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP 88 (829)
Q Consensus 19 fgW~~V~iI~~dd~yG~---~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~arViIv~~~~ 88 (829)
|.=-+|+||...|+-|+ .....|.+.|++.|..+.....++++ .+.+.+.+.+..+ .++++||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 33347899988877652 34577888899999998887777755 5678888877654 378999998754
No 242
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=53.39 E-value=80 Score=31.40 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=56.3
Q ss_pred HHHHHHHHHHH-cC--CcEEEEEEEeCcc--ccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhcCCCeE
Q 043276 8 QVGAITAIIKA-FG--WREAVPIYVDNQY--GEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 8 q~~ai~~ll~~-fg--W~~V~iI~~dd~y--G~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV 81 (829)
-+..+++.|.. .| -+++++|...... ...-.+.+.+++++. |+.+... .....+.+.-.+.+.++.+...++
T Consensus 117 ~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~ 194 (288)
T 1gud_A 117 VGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVAS--QPADWDRIKALDVATNVLQRNPNI 194 (288)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEe--ecCCccHHHHHHHHHHHHHhCCCc
Confidence 34455666644 48 8999999854332 234466788889887 8765432 222222333333444433222222
Q ss_pred -EEEEcChhHHHHHHHHHHHcCc
Q 043276 82 -FILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 82 -iIv~~~~~~~~~i~~~a~~~gm 103 (829)
.|+|.+...|.-+++.+++.|+
T Consensus 195 ~ai~~~nD~~A~g~~~al~~~G~ 217 (288)
T 1gud_A 195 KAIYCANDTMAMGVAQAVANAGK 217 (288)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCchHHHHHHHHHhcCC
Confidence 4566677788899999999996
No 243
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=53.00 E-value=6.2 Score=40.12 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=50.1
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.++||++ +.+ ...+-..++..+.++.+ .+++++.. .+.+..|.+|++
T Consensus 92 ~g~l~I~~~--~~~----------------~~~~l~~~l~~f~~~~P-~v~i~l~~------------~~~~~~l~~~~~ 140 (306)
T 3hhg_A 92 QGVLSVDSA--MPM----------------VLHLLAPLAAKFNERYP-HIRLSLVS------------SEGYINLIERKV 140 (306)
T ss_dssp CEEEEEEBC--HHH----------------HHHTHHHHHHHHHHHCT-TEEEEEEC------------CSSSHHHHTTSS
T ss_pred CCcEEEEcc--HHH----------------HHHHHHHHHHHHHHHCC-CeEEEEEe------------ccchhhHhhcCc
Confidence 578999987 221 12355678889988887 46666652 122346788999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPI 420 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~ 420 (829)
|+++....... ..+. ..|+....++++++.
T Consensus 141 Dl~i~~~~~~~---~~l~-~~~L~~~~~~~v~~~ 170 (306)
T 3hhg_A 141 DIALRAGELDD---SGLR-ARHLFDSRFRVIASP 170 (306)
T ss_dssp SCEEESCCCCC---SSCE-EEEEEEEEEEEEECH
T ss_pred cEEEEeCCCCC---CCeE-EEEeeeeEEEEEECH
Confidence 99986433222 2222 456777777887763
No 244
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=52.94 E-value=54 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEE
Q 043276 345 FKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVV 390 (829)
Q Consensus 345 l~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~ 390 (829)
++...++.|+ +++++.+. ++..+..+|..|++|+..
T Consensus 56 ~~~~~~~~G~--~Ve~~~f~--------~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDI--DVEIKHFS--------DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTC--CEEEEECS--------STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEeC--------ChHHHHHHHHcCCCCEEc
Confidence 3445555686 45667765 578899999999999975
No 245
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=52.69 E-value=42 Score=34.54 Aligned_cols=97 Identities=8% Similarity=0.033 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHH-cC-CcEEEEEEEeCc-cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCC
Q 043276 5 DSSQVGAITAIIKA-FG-WREAVPIYVDNQ-YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQT 79 (829)
Q Consensus 5 D~~q~~ai~~ll~~-fg-W~~V~iI~~dd~-yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~a 79 (829)
+..-+..+++.+.. .| -+++++|..... ....-.+.+.+++++.|+ +.....+....+.+.-.+.+.++.+ ...
T Consensus 157 ~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (342)
T 1jx6_A 157 HAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYYTKATKQSGYDAAKASLAKHPDV 235 (342)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEECCCSSHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEecCCCCHHHHHHHHHHHHHhCCCc
Confidence 33445556666644 57 999999975433 233456778888888876 3222222222233333334444433 234
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCc
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm 103 (829)
.. |++++...+..++..+++.|+
T Consensus 236 ~a-i~~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 236 DF-IYACSTDVALGAVDALAELGR 258 (342)
T ss_dssp SE-EEESSHHHHHHHHHHHHHHTC
T ss_pred cE-EEECCChhHHHHHHHHHHcCC
Confidence 44 445667778889999999986
No 246
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=52.30 E-value=70 Score=34.07 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc----ccchHHHHHHHHHhCCceeeeEEecCCCC-ChhHHHHHHHHhh-c-C
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY----GEELIPSLTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLF-T-M 77 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y----G~~~~~~l~~~l~~~gi~I~~~~~i~~~~-~~~~~~~~l~~lk-~-~ 77 (829)
+..-+..+++.+...|-+++++|...... ...-.+.+.+++++.|+............ +.+.....+.++. . .
T Consensus 123 ~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (412)
T 4fe7_A 123 NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLP 202 (412)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCC
Confidence 34455566777877899999999855443 44567788899999987643221111111 1222233333332 2 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
... .|++++...+..++..+++.|+..++-+-|+
T Consensus 203 ~~~-aI~~~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 203 PQT-GIIAVTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp TTE-EEEESSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred CCe-EEEEEecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 333 4556777888899999999998655544444
No 247
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=52.08 E-value=34 Score=31.40 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=47.5
Q ss_pred EEEEEEEeCc--cc---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCeEEEEEcCh
Q 043276 23 EAVPIYVDNQ--YG---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~--yG---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~arViIv~~~~ 88 (829)
+|+||...|+ .| ......|...|++.|..+.....++++ .+.+.+.+.+..+. ++++||..+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5778877665 22 344678889999999998888777755 56788888876654 78999998654
No 248
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=51.93 E-value=25 Score=24.37 Aligned_cols=12 Identities=0% Similarity=-0.053 Sum_probs=5.1
Q ss_pred HHHHHHHHhhcc
Q 043276 698 FLAVFVHEHWNV 709 (829)
Q Consensus 698 f~~E~~~~~~~~ 709 (829)
+++.+++++|++
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 333344444444
No 249
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=50.58 E-value=40 Score=31.71 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=47.6
Q ss_pred EEEEEEEeCcc--c--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY--G--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y--G--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|+||...|+- | ......|...+++.|..+.....++++ .+.+.+.+.+....++++||..+..
T Consensus 32 rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 32 RALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp EEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 58888876543 2 345678888999999999888787755 5678888877654678999988643
No 250
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=50.39 E-value=49 Score=30.85 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=48.8
Q ss_pred cCCcEEEEEEEeCc------c-c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCeEEEEEcC
Q 043276 19 FGWREAVPIYVDNQ------Y-G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 87 (829)
Q Consensus 19 fgW~~V~iI~~dd~------y-G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~arViIv~~~ 87 (829)
|.=-+|+||...|+ . | ......|...|++.|..+.....++++ .+.+.+.+.+..+. ++++||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 33447888887653 1 3 345677888999999998888777755 56788888776543 5899998864
Q ss_pred h
Q 043276 88 P 88 (829)
Q Consensus 88 ~ 88 (829)
.
T Consensus 91 ~ 91 (178)
T 2pjk_A 91 T 91 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 251
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=49.44 E-value=2.2e+02 Score=28.73 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=51.6
Q ss_pred ecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEe-Cc-ccccCCceeeecCCCCchhhHHHHHHhhhcc
Q 043276 569 VYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMV-EP-TFKTAGFGFAFPLHSPLVHDVSKAILNVTEG 646 (829)
Q Consensus 569 ~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v-~~-~~~~~~~~~~~~k~spl~~~in~~il~l~e~ 646 (829)
.+.+..+..+.+.+|+ +++.+.....+..+....-+ +.++ +. .......+++++++++-.+.--+.|..+...
T Consensus 215 ~~~~~~~~~~~f~~G~----~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 289 (351)
T 4edp_A 215 TYSKSSDLANMFSNGE----IVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK 289 (351)
T ss_dssp EECCHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH
T ss_pred ccCChHHHHHHHHcCC----EEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH
Confidence 3456778889999999 88888776666655554432 4433 21 1112345789999999777777777777655
Q ss_pred ChhHHHHH
Q 043276 647 DKMKEIED 654 (829)
Q Consensus 647 G~~~~~~~ 654 (829)
.....+.+
T Consensus 290 e~q~~~~~ 297 (351)
T 4edp_A 290 EVQEKTAK 297 (351)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43444443
No 252
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=49.10 E-value=1.2e+02 Score=31.72 Aligned_cols=101 Identities=10% Similarity=0.132 Sum_probs=63.9
Q ss_pred ChHHHHH-HHHHHHHHcCCcEEEEEEEeCccc----cchHHHHHHHHHhCCceeeeEEecCCCCChhHHH---HHHHH--
Q 043276 4 NDSSQVG-AITAIIKAFGWREAVPIYVDNQYG----EELIPSLTDALQAIDTRVPYRSVISPLATDDQIE---KELYK-- 73 (829)
Q Consensus 4 sD~~q~~-ai~~ll~~fgW~~V~iI~~dd~yG----~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~---~~l~~-- 73 (829)
+|..++. .+++.|...|-++++.|....+.. ..-.+.+.++|++.|+.+.... .+....+..+. +.|..
T Consensus 138 ~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~-~~d~t~e~G~~~a~~lL~~~~ 216 (371)
T 3qi7_A 138 VSAEERGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVN-TPNINTEEDKNKVKQFLNEDI 216 (371)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEE-ECCCSSTHHHHHHHHHHHHHH
T ss_pred eChHHHHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeec-CCCCchHHHHHHHHHHHhccc
Confidence 3444444 455888899999999998654322 2246678899999999775542 33222222222 22221
Q ss_pred ---hhcCCCeEEEEEcChhHHHHHHHHHHHcCccc
Q 043276 74 ---LFTMQTRVFILHMLPSLGSRIFEKANEIGLMN 105 (829)
Q Consensus 74 ---lk~~~arViIv~~~~~~~~~i~~~a~~~gm~~ 105 (829)
+++.+.---|++++...|.-+++++.+.|...
T Consensus 217 ~~~~~~~~~~TAIFatND~mAiG~ikal~e~Gi~V 251 (371)
T 3qi7_A 217 EKQVKKYGKDINVFGVNEYMDEVILTKALELKYIV 251 (371)
T ss_dssp HHHHHHHCSCCEEEESSHHHHHHHHHHHHHHCCBB
T ss_pred cchhhccCCCcEEEECCHHHHHHHHHHHHHcCCcc
Confidence 22222224688889999999999999999643
No 253
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=48.47 E-value=92 Score=30.56 Aligned_cols=93 Identities=9% Similarity=-0.078 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHc--CCcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--CCeE
Q 043276 8 QVGAITAIIKAF--GWREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRV 81 (829)
Q Consensus 8 q~~ai~~ll~~f--gW~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~arV 81 (829)
-+..+++.|... |-+++++|..... ....-.+.+.+++++.|+.+... .....+.+.-.+.+.++.+. ...
T Consensus 108 ~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~- 184 (271)
T 2dri_A 108 GGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QPADFDRIKGLNVMQNLLTAHPDVQ- 184 (271)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EECTTCHHHHHHHHHHHHHHCTTCC-
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cCCCCCHHHHHHHHHHHHHhCCCcc-
Confidence 344455555443 6789999974432 22445677888899989876432 11222233323333333322 233
Q ss_pred EEEEcChhHHHHHHHHHHHcCc
Q 043276 82 FILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 82 iIv~~~~~~~~~i~~~a~~~gm 103 (829)
.|++.+...|..+++.+++.|+
T Consensus 185 ai~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 185 AVFAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp EEEESSHHHHHHHHHHHHHHTC
T ss_pred EEEECCCcHHHHHHHHHHHcCC
Confidence 4666777788999999999996
No 254
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=48.30 E-value=74 Score=31.23 Aligned_cols=93 Identities=6% Similarity=-0.044 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEEEEeC------------ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC
Q 043276 10 GAITAIIKAFGWREAVPIYVDN------------QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM 77 (829)
Q Consensus 10 ~ai~~ll~~fgW~~V~iI~~dd------------~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~ 77 (829)
...++.++..|.+.|=+..... .......+.+.+.+++.|+.+........ ...+.+.+.+...+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 4556778889999998864221 11233578899999999998876554332 2345677888888888
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCc
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm 103 (829)
+++.++++...+....+...|.+.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999998777767777777777774
No 255
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=48.22 E-value=2.2e+02 Score=28.32 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=42.4
Q ss_pred HHHHHHHHH-CCCcccEEEEecCCCCCCCCCChhHHHHhHhc-Cc-ccEEEecccccc---ccceeccccccccccceEE
Q 043276 343 DVFKAVIEE-LPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL-GE-FDAVVGDTTIVF---NRSNYVDFTLPYTESGVSM 416 (829)
Q Consensus 343 dll~~ia~~-l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~-g~-~Di~~~~~~it~---~R~~~vdft~p~~~~~~~~ 416 (829)
++++.+.++ -|.++ ++.. ++-..++.++.. |. +|+.++.-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V--~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 21 EYEKMFEKEHPNVDV--EREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHCTTEEE--EEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHCCCceE--EEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 566777666 36544 4332 245678888888 75 999876421111 1122345567888888999
Q ss_pred EEEccC
Q 043276 417 IVPIKD 422 (829)
Q Consensus 417 vv~~~~ 422 (829)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 988543
No 256
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=46.30 E-value=57 Score=32.06 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCcEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 10 GAITAIIKAFGWREAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 10 ~ai~~ll~~fgW~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
...++.++..|.+.|-+.... .+......+.+.+.+++.|+.+........ ...+.+.+.+...+..+++.++++..
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 445667788888888776421 112234467888888999988764433211 23456667777777778888888766
Q ss_pred hhHHHHHHHHHHHcCc
Q 043276 88 PSLGSRIFEKANEIGL 103 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm 103 (829)
.+....+...|.+.|+
T Consensus 112 ~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667777777777764
No 257
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=45.00 E-value=35 Score=34.34 Aligned_cols=97 Identities=3% Similarity=-0.172 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHHcC-----CcEEEEEEEeCc--cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHh-h
Q 043276 4 NDSSQVGAITAIIKAFG-----WREAVPIYVDNQ--YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-F 75 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fg-----W~~V~iI~~dd~--yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l-k 75 (829)
++..-+..+++.|...| -+++++|..... ....-.+.+.+++++.|+.+.... ....+.+.-.+.+.++ +
T Consensus 114 D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 191 (304)
T 3o1i_D 114 DWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVID 191 (304)
T ss_dssp CHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHc
Confidence 44455566777887778 889999974432 334557888899999998765432 2222333333333332 2
Q ss_pred cCCCeEEEEEcChhHHHHHHHHHHHcCcc
Q 043276 76 TMQTRVFILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 76 ~~~arViIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
.....+ | +++...+..+++.+++.|+.
T Consensus 192 ~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 192 MGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred CCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 345566 4 56778888899999999963
No 258
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=44.32 E-value=1.5e+02 Score=27.63 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=44.0
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.+.||||++ +.+. ..+-..++..+.++.+ .+++++.... .. + ++.+|++
T Consensus 18 ~G~lrI~~~--~~~~----------------~~~L~~~l~~f~~~~P-~i~l~l~~~~---------~~--~-~l~~~~~ 66 (218)
T 2qsx_A 18 QELLVVDVT--PSFA----------------SLWLVPNINDFHQRHP-NIRVKILTGD---------GA--V-KNIHGES 66 (218)
T ss_dssp -CEEEEEEC--HHHH----------------HHTHHHHHHHHHHHCT-TCEEEEEECC---------SC--C------CC
T ss_pred CCcEEEecC--HHHH----------------HHHHHHHHHHHHHHCC-CeEEEEEecC---------Cc--c-cccCCCC
Confidence 467999987 2221 2345678888889887 4677665532 11 3 7889999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEE
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~ 419 (829)
|+++..-.. ..... -+.++....++++++
T Consensus 67 Dlai~~~~~-~~~~~---~~~~l~~~~~~~v~s 95 (218)
T 2qsx_A 67 DLHVRCLPL-STHYE---YSQLLCEETLLLIGN 95 (218)
T ss_dssp SEEEEEEEC-CSCCS---SEEEEEEEEEEEEEE
T ss_pred CEEEEcCCC-CCCCc---cceeccCCCEEEEEC
Confidence 999842100 11111 456777778777776
No 259
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=43.95 E-value=28 Score=35.23 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=60.0
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceE
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYT 611 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~ 611 (829)
+++++||. .+++|++..-...+.||++.+.+-.-+..+.+.|-. -..|- .|++++-.....-+.++ .|.
T Consensus 106 ~~~~~~l~-~~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~Gl----ADaIvDivsTG~TLraN---gL~ 174 (289)
T 2vd3_A 106 IRGPEDIP-RGAVIATEFPGITENYLREHGIDAEVVELTGSTEIA---PFIGV----ADLITDLSSTGTTLRMN---HLR 174 (289)
T ss_dssp CCSGGGCC-TTCEEEESCHHHHHHHHHHTTCCCEEEECSSCGGGT---TTTTS----CSEEEEEESSTHHHHHT---TEE
T ss_pred CCCHHHhc-CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHC---CCE
Confidence 46777872 367899877788899998877754333344455422 34455 77777766555554444 366
Q ss_pred EeCcccccCCceeeecCCC-Cc-hhhHHHHHHhhh
Q 043276 612 MVEPTFKTAGFGFAFPLHS-PL-VHDVSKAILNVT 644 (829)
Q Consensus 612 ~v~~~~~~~~~~~~~~k~s-pl-~~~in~~il~l~ 644 (829)
.++..+. ..-.+..+|.+ +. .+.++..+.++.
T Consensus 175 ~ie~I~~-ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 175 VIDTILE-SSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEE-ECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EeEEEEe-eEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 6654444 44456666665 22 234555555553
No 260
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.54 E-value=73 Score=32.15 Aligned_cols=99 Identities=6% Similarity=-0.077 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHH-HcCCcEEEEEEEeCcc--ccchHHHHHHHHHhC----CceeeeEEecCCCCChhHHHHHHHHhhc
Q 043276 4 NDSSQVGAITAIIK-AFGWREAVPIYVDNQY--GEELIPSLTDALQAI----DTRVPYRSVISPLATDDQIEKELYKLFT 76 (829)
Q Consensus 4 sD~~q~~ai~~ll~-~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~----gi~I~~~~~i~~~~~~~~~~~~l~~lk~ 76 (829)
++..-+..+++.|. ..|-+++++|...... ...-.+.+.+++++. ++.+..... ....+.+...+.+.++.+
T Consensus 105 D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 183 (313)
T 3m9w_A 105 DNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALT 183 (313)
T ss_dssp CHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHH
Confidence 34445666677665 8999999999744332 334467777788776 566543322 212223333334444332
Q ss_pred -C--CCeEEEEEcChhHHHHHHHHHHHcCcc
Q 043276 77 -M--QTRVFILHMLPSLGSRIFEKANEIGLM 104 (829)
Q Consensus 77 -~--~arViIv~~~~~~~~~i~~~a~~~gm~ 104 (829)
. .... |++++...+..+++.+++.|+.
T Consensus 184 ~~~~~~~a-i~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 184 ANNNKIDA-VVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HTTTCCCE-EEESSHHHHHHHHHHHHTTTCT
T ss_pred hCCCCeeE-EEECCCchHHHHHHHHHHcCCC
Confidence 2 3343 4556677888899999999964
No 261
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.42 E-value=64 Score=32.57 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=56.2
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhH-HHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~-~~~i~~~a 98 (829)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.....+.+..+.+.+.+.||+...... ....+.++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 468888754 778888999999999999988765422 223334456677777788999988875433 35677778
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 77774
No 262
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=42.21 E-value=41 Score=30.91 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=43.6
Q ss_pred EEEEEEEeCccc-----cchHHHHHHH----HHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYG-----EELIPSLTDA----LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG-----~~~~~~l~~~----l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|+||...|+-. ......|.+. |++.|+.+.....++++ .+.+.+.+.+..+.++++||..+..
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 677877665542 2345778888 89999988877777755 5678888887665458999988653
No 263
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=41.73 E-value=72 Score=29.49 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=44.5
Q ss_pred EEEEEEEeCcc-------c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhh-cCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY-------G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y-------G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk-~~~arViIv~~~~ 88 (829)
+|+||...|.- | ...-+.|.+.|++.|+.+.....++++ .+.+.+.+.... ...+++||..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 57888755421 1 123467889999999999988888765 556777776654 3568899988753
No 264
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=41.48 E-value=1.1e+02 Score=30.32 Aligned_cols=45 Identities=9% Similarity=-0.116 Sum_probs=30.7
Q ss_pred ChhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 373 SYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 373 ~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
+...++..|.+|++|+++....... ..+. ..|+....++++++..
T Consensus 128 ~~~~~~~~l~~g~~D~~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 128 DQDHSARLLREGVAMGAVTTERNPV---PGCR-VHPLGEMRYLPVASRP 172 (303)
T ss_dssp CHHHHHHHHHTTSCSEEEESCCSCC---TTEE-EEEEEEEEEEEEECHH
T ss_pred ChHHHHHHHHcCcceEEEecCCCCC---CCeE-EEEccceeEEEEecch
Confidence 5678999999999999986432221 1222 4677777888888743
No 265
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.39 E-value=35 Score=23.65 Aligned_cols=12 Identities=17% Similarity=-0.128 Sum_probs=4.6
Q ss_pred HHHHHHHHhhcc
Q 043276 698 FLAVFVHEHWNV 709 (829)
Q Consensus 698 f~~E~~~~~~~~ 709 (829)
.++.+++.|||+
T Consensus 27 ~~~~~~~~RRRr 38 (44)
T 2l2t_A 27 GLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHhhhhh
Confidence 333334433333
No 266
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=40.75 E-value=51 Score=22.81 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 043276 688 GIAAILALIIFLAVFVHEHWNV 709 (829)
Q Consensus 688 ~vg~~lallvf~~E~~~~~~~~ 709 (829)
.+|+++.+++.+.-++|.|||+
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 3444444444455555555554
No 267
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=40.72 E-value=1.8e+02 Score=28.99 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC-
Q 043276 9 VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML- 87 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~- 87 (829)
...+|+-....|-..+.++. |..|..+..+.|...-+..++.|-....+. +.. ++...+..+++.|++.+.
T Consensus 81 p~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~~----qi~ea~~~GAD~VlLi~a~ 152 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF---DPY----QVYEARSWGADCILIIMAS 152 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC---STH----HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC---CHH----HHHHHHHcCCCEEEEcccc
Confidence 45677777888999999988 556655778888776666777765332221 111 466677899999988864
Q ss_pred --hhHHHHHHHHHHHcCc
Q 043276 88 --PSLGSRIFEKANEIGL 103 (829)
Q Consensus 88 --~~~~~~i~~~a~~~gm 103 (829)
.+....+...++++||
T Consensus 153 L~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 153 VDDDLAKELEDTAFALGM 170 (272)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 4567788999999997
No 268
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.74 E-value=1.2e+02 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchH
Q 043276 3 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELI 38 (829)
Q Consensus 3 psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~ 38 (829)
-|....-..|-++++.|+-+-|+++..|.+|.+..+
T Consensus 33 rspqelkdsieelvkkynativvvvvddkewaekai 68 (134)
T 2l69_A 33 RSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAI 68 (134)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHH
Confidence 344455667788888888888888876666655443
No 269
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=38.73 E-value=78 Score=31.58 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=55.6
Q ss_pred cEEEEEEEe---CccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-HHHHHHH
Q 043276 22 REAVPIYVD---NQYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFE 96 (829)
Q Consensus 22 ~~V~iI~~d---d~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~-~~~~i~~ 96 (829)
+.|++|..+ +.|.......+.+++++. |..+..........+.....+.+..+...+.+.||+..... .....+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 88 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTD 88 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHH
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 467777644 567788889999999988 76665543322222344555677788888999999887544 3456677
Q ss_pred HHHHcCc
Q 043276 97 KANEIGL 103 (829)
Q Consensus 97 ~a~~~gm 103 (829)
.+.+.|+
T Consensus 89 ~~~~~~i 95 (304)
T 3gbv_A 89 ALNELGI 95 (304)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777774
No 270
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=38.15 E-value=55 Score=35.58 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 88 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-- 88 (829)
.+.++++.+|-+++.||+...-+. ...+.+.+.|++.|+.+.+ ..+....+.+.+.+....+++ +.++||-.+..
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 355677778866888888554433 5688889999999988754 334444455566666767777 88999988764
Q ss_pred hHHHHHHHHHHHcCccccCeEEEEcCc
Q 043276 89 SLGSRIFEKANEIGLMNKGCVWIMTDG 115 (829)
Q Consensus 89 ~~~~~i~~~a~~~gm~~~~~vwI~t~~ 115 (829)
-++..+.. ...| -.++-|-|..
T Consensus 158 iD~AK~iA--~~~g---iP~I~IPTTA 179 (450)
T 1ta9_A 158 MDSAKYIA--HSMN---LPSIICPTTA 179 (450)
T ss_dssp HHHHHHHH--HHTT---CCEEEEESSC
T ss_pred HHHHHHHH--HhcC---CCEEEEeCCC
Confidence 34444443 2234 3566676653
No 271
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=38.08 E-value=22 Score=35.01 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=51.0
Q ss_pred EEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccc---eeccccccccccce
Q 043276 338 VGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRS---NYVDFTLPYTESGV 414 (829)
Q Consensus 338 ~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~---~~vdft~p~~~~~~ 414 (829)
.|+--+|+..+.++.|.++++.+. .-..++.++.+|.+|+.+..-....+.. ....-..|+....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~-----------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~l 86 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV-----------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDF 86 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE-----------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc-----------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcE
Confidence 466677888888887765444432 3467899999999999986544333221 11112468889999
Q ss_pred EEEEEccCCC
Q 043276 415 SMIVPIKDSK 424 (829)
Q Consensus 415 ~~vv~~~~~~ 424 (829)
++++|..++.
T Consensus 87 VlV~P~~~P~ 96 (236)
T 3lr1_A 87 VIVGPKNDPA 96 (236)
T ss_dssp EEEECTTCTT
T ss_pred EEEEECCChh
Confidence 9999976543
No 272
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=37.71 E-value=66 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.035 Sum_probs=40.7
Q ss_pred EEEEEEEeCcc--c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 23 EAVPIYVDNQY--G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 23 ~V~iI~~dd~y--G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
+|+||...|+- | ......|.+.|++.|+.+.....++++ .+.+.+.+.+..+ .+++||..+.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~-~~DlVittGG 71 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD--LDEIGWAFRVALE-VSDLVVSSGG 71 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHH-HCSEEEEESC
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHh-cCCEEEEcCC
Confidence 57777766542 3 244677888888889888877777654 4567666665543 2677777653
No 273
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=37.36 E-value=64 Score=33.75 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS- 89 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~- 89 (829)
.+.++++.+|.+++.||++.... +..+.+.+.|++.++.+ +. .+.++.+.+.+.+.+..+++.++++||-.+...
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 46678889999999999865543 35778888888766433 22 333444556777888888888999999988653
Q ss_pred -HHHHHHHHHHHcCccccCeEEEEcCc
Q 043276 90 -LGSRIFEKANEIGLMNKGCVWIMTDG 115 (829)
Q Consensus 90 -~~~~i~~~a~~~gm~~~~~vwI~t~~ 115 (829)
++..+... ..+ -.++-|-|..
T Consensus 100 iD~aK~iA~--~~~---~p~i~IPTTa 121 (353)
T 3hl0_A 100 TGLGKAIAL--RTD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHH--HHC---CEEEEEECSS
T ss_pred HHHHHHHHh--ccC---CCEEEEeCCc
Confidence 33343332 233 2466666665
No 274
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.67 E-value=49 Score=24.88 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043276 686 IAGIAAILALIIFLAVF 702 (829)
Q Consensus 686 il~vg~~lallvf~~E~ 702 (829)
++|.+.++.+++-++-+
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 44444444333333344
No 275
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=36.24 E-value=54 Score=34.42 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS- 89 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~- 89 (829)
.+.++++.+|.+++.||+....+| ..+.+.+.|++.++.+ +. .+.++.+.+.+.+.+..+++.++++||-.+...
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 101 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGGST 101 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHH
Confidence 456788899999999998655443 4677888888765432 32 333344556777778888888899999988753
Q ss_pred -HHHHHHHHHHHcCccccCeEEEEcCc
Q 043276 90 -LGSRIFEKANEIGLMNKGCVWIMTDG 115 (829)
Q Consensus 90 -~~~~i~~~a~~~gm~~~~~vwI~t~~ 115 (829)
++..+... ..+ -.++-|-|..
T Consensus 102 iD~aK~iA~--~~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 102 TGLGKAIAL--ETG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHH--HHC---CCEEEEECSS
T ss_pred HHHHHHHHh--ccC---CCEEEEeCCc
Confidence 33444332 233 3466777764
No 276
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=36.04 E-value=1.5e+02 Score=26.83 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHcCCcEEE
Q 043276 7 SQVGAITAIIKAFGWREAV 25 (829)
Q Consensus 7 ~q~~ai~~ll~~fgW~~V~ 25 (829)
.|.+++-++....||.-+.
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~ 44 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVG 44 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 3444555555555555443
No 277
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=35.88 E-value=61 Score=32.59 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=40.2
Q ss_pred CccchhHHHHHHHhhhcC-c-cc--ccc----chhHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 043276 471 HQVGTSFWFSFSTMVFSQ-R-ER--VIS----NLARFVVIVWCFVVLILIQSYTASLTSLLTVDQ 527 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~-~-~~--~~s----~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~ 527 (829)
.++.+++|..+.++...+ + .. |.. ...+++..+.++.++++.+.++|-+.+.+....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999998776 3 21 322 234667777777889999999999999876543
No 278
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.84 E-value=85 Score=31.08 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=55.8
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHH
Q 043276 22 REAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a 98 (829)
+.|++|.. ++.|.......+.+++++.|..+..... ..+.+...+.+..+.+.+.+.||+.... ......+.++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 46888875 4667778889999999999988765422 2233344566777777788999887654 4556678888
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 279
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=34.35 E-value=78 Score=31.69 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=51.3
Q ss_pred EEEEEE-EeC--ccccchHHHHHHHHHhCCce---eeeEEecCCCCChhHHHHHHHHhhcC--CCeE-EEEEcChhHHHH
Q 043276 23 EAVPIY-VDN--QYGEELIPSLTDALQAIDTR---VPYRSVISPLATDDQIEKELYKLFTM--QTRV-FILHMLPSLGSR 93 (829)
Q Consensus 23 ~V~iI~-~dd--~yG~~~~~~l~~~l~~~gi~---I~~~~~i~~~~~~~~~~~~l~~lk~~--~arV-iIv~~~~~~~~~ 93 (829)
+++++. ... .....-.+.+.+++++.|.. +... .....+.+.-...+.++.+. .... +|++++...+.-
T Consensus 134 ~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g 211 (306)
T 8abp_A 134 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV--PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 211 (306)
T ss_dssp GEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEE--ECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHH
T ss_pred ceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEee--ccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHH
Confidence 888886 332 23345567788888887742 3221 12222333444445554443 3444 466777788889
Q ss_pred HHHHHHHcCccccCeEEEE
Q 043276 94 IFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 94 i~~~a~~~gm~~~~~vwI~ 112 (829)
+++.+++.|+.. +.+-|.
T Consensus 212 ~~~al~~~g~~v-~di~vv 229 (306)
T 8abp_A 212 GVRATEGQGFKA-ADIIGI 229 (306)
T ss_dssp HHHHHHHTTCCG-GGEEEE
T ss_pred HHHHHHHcCCCC-CceEEE
Confidence 999999999754 444433
No 280
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=33.82 E-value=1e+02 Score=28.99 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=47.6
Q ss_pred HcCCcEEEEEEEeCcc--c---cchHHHHHHHHHh---CCceeeeEEecCCCCChhHHHHHHHHhhc-CCCeEEEEEcCh
Q 043276 18 AFGWREAVPIYVDNQY--G---EELIPSLTDALQA---IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP 88 (829)
Q Consensus 18 ~fgW~~V~iI~~dd~y--G---~~~~~~l~~~l~~---~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~arViIv~~~~ 88 (829)
.+.=-+|+||...|+- | ......|...|++ .|..+.....++++ .+.+.+.+.+..+ .++++||..+..
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGt 88 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGT 88 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCC
Confidence 3444578888877652 2 2335678888888 79888887777755 5678888877654 478999998754
No 281
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=33.80 E-value=3.6e+02 Score=26.68 Aligned_cols=69 Identities=7% Similarity=0.105 Sum_probs=42.9
Q ss_pred HHHHHHHHHC-CCcccEEEEecCCCCCCCCCChhHHHHhHhc-Cc-ccEEEecccccc---ccceeccccccccccceEE
Q 043276 343 DVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL-GE-FDAVVGDTTIVF---NRSNYVDFTLPYTESGVSM 416 (829)
Q Consensus 343 dll~~ia~~l-~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~-g~-~Di~~~~~~it~---~R~~~vdft~p~~~~~~~~ 416 (829)
++++.+.++. |.++++ .. ++-..++.++.. |. +|+.+..-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V~~--~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i 89 (296)
T 3cfx_A 21 ELEAEFEAQHPGVDVQR--EA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 89 (296)
T ss_dssp HHHHHHHHHSTTCEEEE--EE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHCCCceEEE--Ee---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEE
Confidence 5677777773 654444 33 245678888888 64 999876422111 1223345567888888999
Q ss_pred EEEccC
Q 043276 417 IVPIKD 422 (829)
Q Consensus 417 vv~~~~ 422 (829)
+++...
T Consensus 90 ~~~~~~ 95 (296)
T 3cfx_A 90 AYTNES 95 (296)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 988543
No 282
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.54 E-value=62 Score=29.65 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=45.6
Q ss_pred EEEEEEEeCcc--c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY--G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y--G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|+||...|+- | ......|...|++.|..+.....++++ +.+.+.+.+..+.++++||..+..
T Consensus 9 rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd---~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 9 SARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG---SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp EEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS---HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH---HHHHHHHHHHHhCCCCEEEECCCC
Confidence 68888776553 2 345678888999999998877777643 467777777655578999998643
No 283
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.12 E-value=95 Score=30.52 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=55.0
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 99 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~ 99 (829)
+.|++|..+ +.|.......+.+++++.|..+.... ...+.+.-.+.+..+.+.+.+.||+..... ...+..+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~ 82 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFD---ANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEIL 82 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEE---CTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHH
Confidence 468888754 56778889999999999998876532 122233445667777788899999987665 56677777
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 83 ~~~i 86 (276)
T 3jy6_A 83 HQQM 86 (276)
T ss_dssp TTSS
T ss_pred HCCC
Confidence 7664
No 284
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=32.38 E-value=37 Score=33.33 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=49.5
Q ss_pred EEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccc---eeccccccccccce
Q 043276 338 VGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRS---NYVDFTLPYTESGV 414 (829)
Q Consensus 338 ~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~---~~vdft~p~~~~~~ 414 (829)
.|+.-+|+..+.++.|.++++.+. .-..++.++.+|.+|+.+..-....+.. ....-..||....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~-----------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~l 86 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA-----------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDF 86 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE-----------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc-----------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCE
Confidence 355667888888887765444432 3467889999999999886544332221 01112468888899
Q ss_pred EEEEEccCC
Q 043276 415 SMIVPIKDS 423 (829)
Q Consensus 415 ~~vv~~~~~ 423 (829)
++++|...+
T Consensus 87 VlV~P~~~P 95 (237)
T 3muq_A 87 VIVGPKADP 95 (237)
T ss_dssp EEEECTTCT
T ss_pred EEEEeCCCh
Confidence 999996654
No 285
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=32.23 E-value=54 Score=35.13 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=52.9
Q ss_pred HHHHHHHcCCcEEEEEEEeCcccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--
Q 043276 12 ITAIIKAFGWREAVPIYVDNQYGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 88 (829)
Q Consensus 12 i~~ll~~fgW~~V~iI~~dd~yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-- 88 (829)
+.++++ +| +++.||+.+..... +..+.+.+.|+ |+++.....+.++.+.+.+.+.+..+++.++++||-.+..
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 445566 78 89988885443333 46777888786 7765433333344556677788888888889999988764
Q ss_pred hHHHHHHHH
Q 043276 89 SLGSRIFEK 97 (829)
Q Consensus 89 ~~~~~i~~~ 97 (829)
-++..+...
T Consensus 119 iD~AK~iA~ 127 (408)
T 1oj7_A 119 LDGTKFIAA 127 (408)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 286
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=32.09 E-value=1.1e+02 Score=31.01 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=55.1
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-HHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~-~~~~i~~~a 98 (829)
+.|++|..+ +.|.......+.+++++.|..+.... . ..+.+.-.+.+..+.+.+.+.||+..... .....+.++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--A-DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--C-TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--C-CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 467888754 67778889999999999998876543 1 22233344566666667889998876543 446677788
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 287
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=31.76 E-value=3e+02 Score=27.47 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCCHHHHHhCC--CcEEEEe------CchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHH
Q 043276 532 ITDVNLLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYA 599 (829)
Q Consensus 532 I~s~~dL~~~~--~~vg~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 599 (829)
|+|++||.+.. .++|+.. |.-...+.+.++++-..+... +.....+++.+|+ .+++..-.+..
T Consensus 131 l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~~~YGl~~~~~~~~-~~g~~~~A~~~~~----~~v~~~wsp~~ 201 (284)
T 3r6u_A 131 LETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPM-QIGLVYDAVKSGK----MDIVLAYSTDG 201 (284)
T ss_dssp CCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHHHHHCCCCSEEEEC-CGGGHHHHHHHTS----CSEEEEETTCH
T ss_pred CCCHHHHHhhhhceeeccCcccccCchhHHHHHHHHcCCCccccccc-CHHHHHHHHHcCC----CeEEEEeCCCc
Confidence 78999998653 3567653 233334555566643333333 3334678899998 77776665543
No 288
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=31.06 E-value=58 Score=32.91 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHH---C--CCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccc--eeccc-cc-ccc
Q 043276 340 YSIDVFKAVIEE---L--PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRS--NYVDF-TL-PYT 410 (829)
Q Consensus 340 ~~idll~~ia~~---l--~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~--~~vdf-t~-p~~ 410 (829)
+.-+++..+.++ . + .+++++.. ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 34 ~lp~ll~~F~~~~~~~~~P-~v~v~l~~---------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 34 LVKELADAFIKSKVDSGSA-PFKVAWYK---------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp HHHHHHHHHHHHHHSCC----CEEEEEE---------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHhhhcccCCC-CeEEEEEe---------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 456788888888 7 3 35555554 35789999999999999986432221110 11122 24 888
Q ss_pred ccceEEEEEccCC
Q 043276 411 ESGVSMIVPIKDS 423 (829)
Q Consensus 411 ~~~~~~vv~~~~~ 423 (829)
...++++++...+
T Consensus 104 ~d~lvlv~~~~hp 116 (294)
T 3cvg_A 104 RDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEECTTCT
T ss_pred eccEEEEecCCCh
Confidence 8899999985543
No 289
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=30.86 E-value=4e+02 Score=26.29 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=43.0
Q ss_pred HHHHHHHHHC-CCcccEEEEecCCCCCCCCCChhHHHHhHhc-Cc-ccEEEecccc--cc-ccceeccccccccccceEE
Q 043276 343 DVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLIYQVFL-GE-FDAVVGDTTI--VF-NRSNYVDFTLPYTESGVSM 416 (829)
Q Consensus 343 dll~~ia~~l-~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~-g~-~Di~~~~~~i--t~-~R~~~vdft~p~~~~~~~~ 416 (829)
++++.+.++. |.++++.+ ++...++.++.. |. +|+.++.-.. .. .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 21 AFKRAFEEKHPNVEVQTEA-----------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHCTTCEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHCCCceEEEEe-----------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 5666776774 66554433 245678888888 75 9998864221 11 1122344567888888999
Q ss_pred EEEccC
Q 043276 417 IVPIKD 422 (829)
Q Consensus 417 vv~~~~ 422 (829)
++++..
T Consensus 90 ~~~~~~ 95 (295)
T 3cij_A 90 AYRNDS 95 (295)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 998553
No 290
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=30.64 E-value=71 Score=29.28 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=43.9
Q ss_pred EEEEEEEeCcccc-----chHHHHHHHHHhC-----CceeeeEEecCCCCChhHHHHHHHHhhc-CCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYGE-----ELIPSLTDALQAI-----DTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG~-----~~~~~l~~~l~~~-----gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~arViIv~~~~ 88 (829)
+|+||...|+--. .....+.+.++++ |..+.....++++ .+.+.+.+.+..+ .++++||..+..
T Consensus 7 rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 7 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 6788876654311 1135667777777 8888877777755 5678888877654 578999998754
No 291
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.42 E-value=89 Score=32.15 Aligned_cols=79 Identities=9% Similarity=0.077 Sum_probs=54.6
Q ss_pred cEEEEEEEe---CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc--CCCeEEEEEcChhHHHHHHH
Q 043276 22 REAVPIYVD---NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFE 96 (829)
Q Consensus 22 ~~V~iI~~d---d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~--~~arViIv~~~~~~~~~i~~ 96 (829)
..|++|..+ +.|.......+.+++++.|..+.... ...+.....+.+..+.+ .+++.||+.........++.
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~---~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~ 80 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY---AERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILR 80 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE---CCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHH
Confidence 578888854 36788889999999999998876542 12223333455666655 58899998765555667777
Q ss_pred HHHHcCc
Q 043276 97 KANEIGL 103 (829)
Q Consensus 97 ~a~~~gm 103 (829)
.+.+.|+
T Consensus 81 ~~~~~gi 87 (350)
T 3h75_A 81 LSQGSGI 87 (350)
T ss_dssp HHTTSCC
T ss_pred HHHhCCC
Confidence 8877774
No 292
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.19 E-value=91 Score=31.15 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=54.6
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a 98 (829)
+++++|..+ +.|.......+.+++++.|..+.... ....+.....+.+..+.+.+.+.+|+.... +.....+.++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 467777643 56778888999999999998876532 222233445566777777788988887644 3345677788
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88774
No 293
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.02 E-value=1.2e+02 Score=29.89 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=55.9
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh----HHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS----LGSRIF 95 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~----~~~~i~ 95 (829)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.+.-.+.+..+.+.+.+.+|+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999854 567788899999999999988765422 22233445667777778899999876432 344567
Q ss_pred HHHHHcCc
Q 043276 96 EKANEIGL 103 (829)
Q Consensus 96 ~~a~~~gm 103 (829)
.++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77777774
No 294
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=28.90 E-value=18 Score=21.91 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=13.9
Q ss_pred CccchhHHHHHHHhhhcC
Q 043276 471 HQVGTSFWFSFSTMVFSQ 488 (829)
Q Consensus 471 ~~~~~~~~~~~~~l~~~~ 488 (829)
..++.++||+|++++-.+
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 357789999999988543
No 295
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.85 E-value=1e+02 Score=30.50 Aligned_cols=79 Identities=10% Similarity=0.159 Sum_probs=54.8
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a 98 (829)
+.|++|..+ +.|.......+.+++++.|..+..... ..+.+...+.+..+.+.+.+.||+.... +.....+.++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 468888743 667788889999999999988765422 2233345566777777888988887654 3334667777
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 86 ~~~~i 90 (293)
T 3l6u_A 86 KKAGI 90 (293)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 77774
No 296
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.62 E-value=48 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 043276 692 ILALIIFLAVFVHE 705 (829)
Q Consensus 692 ~lallvf~~E~~~~ 705 (829)
++++++.++-++|+
T Consensus 23 gv~li~~l~~~~~r 36 (38)
T 2k1k_A 23 GAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHee
Confidence 34444444444444
No 297
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=27.25 E-value=1.1e+02 Score=28.45 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=43.3
Q ss_pred EEEEEEEeCcc--c---cchHHHHHHHHH---hCCceeeeEEecCCCCChhHHHHHHHHhhcC-CCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY--G---EELIPSLTDALQ---AIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y--G---~~~~~~l~~~l~---~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~-~arViIv~~~~ 88 (829)
+|+||...|+- | ......|...++ +.|..+ ....++++ .+.+.+.+.+..+. ++++||..+..
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 67888876652 2 223466777676 899988 55566654 56788888876653 78999998753
No 298
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.97 E-value=66 Score=31.49 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=53.3
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 99 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~ 99 (829)
+.|+++..+ +.|.....+.+.+++++.|..+..... ..+.+...+.+..+.+.+.+.+|+..........+..+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 457788754 567788899999999999988765421 222334456677777788899888765422345566677
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7664
No 299
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=26.93 E-value=1.2e+02 Score=30.10 Aligned_cols=72 Identities=11% Similarity=-0.069 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEecccccccc---ceeccccccccccceEE
Q 043276 340 YSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNR---SNYVDFTLPYTESGVSM 416 (829)
Q Consensus 340 ~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R---~~~vdft~p~~~~~~~~ 416 (829)
+.-++++.+.++.+ .+++.+... +-...+.+|.+|++|+++.+..+...- ...+ ...|+..+.+++
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~~---------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvv 85 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQGG---------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITP 85 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEE---------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CceEEEEeC---------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEE
Confidence 33567777777775 355555442 457889999999999998765554320 1112 257888999999
Q ss_pred EEEccC
Q 043276 417 IVPIKD 422 (829)
Q Consensus 417 vv~~~~ 422 (829)
+++...
T Consensus 86 vv~~~~ 91 (264)
T 4ecf_A 86 IVNKKV 91 (264)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 998543
No 300
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=26.93 E-value=1.2e+02 Score=30.00 Aligned_cols=78 Identities=8% Similarity=0.059 Sum_probs=51.7
Q ss_pred EEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHHH
Q 043276 23 EAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKAN 99 (829)
Q Consensus 23 ~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a~ 99 (829)
.|+++.. ++.|.......+.+++++.|..+.... ...+.+...+.+..+...+.+.+|+.... +.....+.++.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 4 KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFD---SQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeC---CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 6788875 367888889999999999998775432 12223334455667667788888887643 32334566676
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 81 ~~~i 84 (290)
T 2fn9_A 81 EAGI 84 (290)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6663
No 301
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=26.86 E-value=1.4e+02 Score=28.10 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred EEEEEEEeCccc-----cchHHHHHHHHHhCCce--eeeEEecCCCCChhHHHHHHHHhhcC-CCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYG-----EELIPSLTDALQAIDTR--VPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG-----~~~~~~l~~~l~~~gi~--I~~~~~i~~~~~~~~~~~~l~~lk~~-~arViIv~~~~ 88 (829)
+|+||...|+-- ......|.+.|++.|.. +.....++++ .+.+.+.|.++.+. ++++||..+..
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd--~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE--QAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 678887666543 23457788889988876 4555566644 55777888776553 68999998654
No 302
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=26.39 E-value=1.3e+02 Score=29.83 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=52.3
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-HHHHHHHHH
Q 043276 22 REAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~-~~~~i~~~a 98 (829)
..|+++.. ++.|.......+.+++++.|+.+.+. .+...+.+...+.+..+...+.+.+|+..... .....+..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQV--GPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEE--CCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 35777763 46778888899999999999876532 11222333444566777677889888876543 334566777
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77663
No 303
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.33 E-value=1.9e+02 Score=29.37 Aligned_cols=80 Identities=6% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CCcEEEEEEEe----CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHH
Q 043276 20 GWREAVPIYVD----NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 95 (829)
Q Consensus 20 gW~~V~iI~~d----d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~ 95 (829)
.=+.|++|..+ +.|.......+.+++++.|..+.... ...+.+.-.+.+..+.+.+.+.+|+.........+.
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE---CTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 34578888755 56777888999999999998876543 122233344566777778899999876543444455
Q ss_pred HHHHHcC
Q 043276 96 EKANEIG 102 (829)
Q Consensus 96 ~~a~~~g 102 (829)
..+.+.|
T Consensus 137 ~~~~~~~ 143 (338)
T 3dbi_A 137 DIIDAHS 143 (338)
T ss_dssp HHHHHCS
T ss_pred HHHHcCC
Confidence 5666655
No 304
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=25.95 E-value=85 Score=31.82 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=52.9
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh-HHHHHHHHH
Q 043276 22 REAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~-~~~~i~~~a 98 (829)
+.|+++.. ++.|.....+.+++++++.|..+... .+...+...-.+.+..+...+.+.+|+..... .....+.++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 46788763 46677888888999999999776432 12222333344566777777899988875433 335677788
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88774
No 305
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.76 E-value=1.1e+02 Score=30.39 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=51.5
Q ss_pred cEEEEEEEe-------CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHH
Q 043276 22 REAVPIYVD-------NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 94 (829)
Q Consensus 22 ~~V~iI~~d-------d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i 94 (829)
+.|++|..+ +.|.......+.+++++.|..+... ....+.+.....+..+.+.+.+.||+...... ...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~~ 84 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DRI 84 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CHH
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHH
Confidence 467888755 5677788899999999999876532 22222233445666777788999988654422 245
Q ss_pred HHHHHHcCc
Q 043276 95 FEKANEIGL 103 (829)
Q Consensus 95 ~~~a~~~gm 103 (829)
+..+.+.|+
T Consensus 85 ~~~l~~~~i 93 (292)
T 3k4h_A 85 IQYLHEQNF 93 (292)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 666777674
No 306
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=25.45 E-value=1.6e+02 Score=29.86 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=50.5
Q ss_pred EEEEEEEe---CccccchHHHHHHHHHhCCceeeeEEecCC-CCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHH
Q 043276 23 EAVPIYVD---NQYGEELIPSLTDALQAIDTRVPYRSVISP-LATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 98 (829)
Q Consensus 23 ~V~iI~~d---d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~-~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a 98 (829)
.|++|..+ +.|.......+.+++++.|..+.....-.. ..+.+.-.+.+..+.+.+.+.||+..........+.++
T Consensus 45 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 124 (342)
T 1jx6_A 45 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHV 124 (342)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHH
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHH
Confidence 68888754 577778889999999999976654321111 01233344566677677889998854433334456666
Q ss_pred HHcC
Q 043276 99 NEIG 102 (829)
Q Consensus 99 ~~~g 102 (829)
.+.|
T Consensus 125 ~~~~ 128 (342)
T 1jx6_A 125 LDST 128 (342)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 6656
No 307
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=25.22 E-value=3e+02 Score=27.01 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
....||+-.... -.-+.+++ |..|..+..+.|...-+..++.|-....+ .+ .+ ++...+..++++|.+.+.
T Consensus 62 ~~~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi---~~--~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 62 SLEDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY---ID--TV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp CHHHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC---CS--TH--HHHHHHHTTCSEEEEEGG
T ss_pred CHHHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC---CC--HH--HHHHHHHcCCCEEEEecc
Confidence 344555555444 56666665 77888888888887766677776533322 11 22 456677899999999876
Q ss_pred h---hHHHHHHHHHHHcCc
Q 043276 88 P---SLGSRIFEKANEIGL 103 (829)
Q Consensus 88 ~---~~~~~i~~~a~~~gm 103 (829)
. .....++..|+++||
T Consensus 133 ~l~~~~l~~l~~~a~~lGl 151 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGM 151 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 5 577889999999997
No 308
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.24 E-value=3.9e+02 Score=23.98 Aligned_cols=97 Identities=11% Similarity=-0.033 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEec--CC----CCChhHHHHHHHHhhcCCCeEEEE
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVI--SP----LATDDQIEKELYKLFTMQTRVFIL 84 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i--~~----~~~~~~~~~~l~~lk~~~arViIv 84 (829)
.+.+.+..+|--..+..| .+..+......+.++|...|+.+...... +. +..+-.+.-.+-.+. ...+.+|+
T Consensus 37 ~l~~~~~~~g~l~~~~~Y-~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~vL 114 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAY-AIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVIL 114 (165)
T ss_dssp HHHHHHTTTEEEEEEEEE-ECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEEE
T ss_pred HHHHHHhcCCEEEEEEEE-EccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEEE
Confidence 444445444433344445 33333345677889999999887543211 11 122222221111222 45678888
Q ss_pred EcChhHHHHHHHHHHHc-CccccCeEEEEc
Q 043276 85 HMLPSLGSRIFEKANEI-GLMNKGCVWIMT 113 (829)
Q Consensus 85 ~~~~~~~~~i~~~a~~~-gm~~~~~vwI~t 113 (829)
.+...+...+++.+++. | ..|.+.+
T Consensus 115 vSgD~DF~plv~~lr~~~G----~~V~v~g 140 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYN----KKVTVYG 140 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHC----CEEEEEE
T ss_pred EECChhHHHHHHHHHHHcC----cEEEEEe
Confidence 88778888999999995 8 3555554
No 309
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=24.21 E-value=3.7e+02 Score=26.81 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCCHHHHHhCC--CcEEEEe------CchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHH
Q 043276 532 ITDVNLLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAK 600 (829)
Q Consensus 532 I~s~~dL~~~~--~~vg~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 600 (829)
|+|++||.+.. .++|+.. |.-...+.+.++++-..+... +.....+++.+|+ ++++..-.+...
T Consensus 130 l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l~~~Ygl~~~~~~~~-d~g~~~~A~~~~~----~~v~~~wsp~~~ 201 (282)
T 3o66_A 130 LETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPM-QIGLVYDALNTEK----LDVALGYSTDGR 201 (282)
T ss_dssp CSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEE-CGGGHHHHHHTTS----CSEEEEETTCHH
T ss_pred CCCHHHHHhcccceEEecCcccccCchhHHHHHHHHcCCCCcccccc-CHHHHHHHHHcCC----CeEEEEeCCCch
Confidence 79999997643 2677754 233344555566643333333 3336778999998 777766665433
No 310
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.09 E-value=1.4e+02 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEE
Q 043276 6 SSQVGAITAIIKAFGWREAVP 26 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~i 26 (829)
..|.+++-++.+..||.-+.+
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~ 44 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDT 44 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE
Confidence 456666777776667765544
No 311
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=23.92 E-value=92 Score=32.05 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=61.0
Q ss_pred CCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHH-HhcCCC
Q 043276 530 PTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLL-IGQHCS 608 (829)
Q Consensus 530 ~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~-~~~~c~ 608 (829)
.+|++++|| +|.++-+..+......++.++... +. -...|...+|++|. +|+.......+... +..-++
T Consensus 144 kpI~s~~Dl--kGlKiR~~~~~~~~~~~~alGa~p---v~-m~~~Evy~ALq~Gv----vDg~e~~~~~~~~~~~~Ev~k 213 (326)
T 3fxb_A 144 TPVTTCSDL--DEVKFRVMTNPLLVESYKAFGATP---TP-LPWGEVYGGLQTNV----IQGQENPTFFLYSTKIYEVTD 213 (326)
T ss_dssp SCCSSGGGS--TTCEEEECSCHHHHHHHHHHTSEE---EE-CCGGGHHHHHHTTS----CCEEEEEHHHHHHTTGGGSCS
T ss_pred CCCCChHHh--CCCEEEecCCHHHHHHHHHcCCee---ee-cCHHHHHHHHHcCC----cceEecCHHHHHhccHhhhcc
Confidence 579999999 599988876667778888877633 22 24568999999999 99887655433211 112254
Q ss_pred ceEEeCcccccCCceeeecCCCC--chhhHHHHHHh
Q 043276 609 KYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILN 642 (829)
Q Consensus 609 ~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~il~ 642 (829)
+...... ......+++.+..- |-+....+|..
T Consensus 214 -y~~~~~~-~~~~~~~~~n~~~w~~L~~e~q~~i~~ 247 (326)
T 3fxb_A 214 -YITYAGH-NNFTTAVMANKDFYDGLSAEDQQLVQN 247 (326)
T ss_dssp -EEEECCC-CEEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred -eeEEcCc-cccceEEEEeHHHHhcCCHHHHHHHHH
Confidence 3333222 12244566666522 44444444444
No 312
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=23.92 E-value=2.5e+02 Score=27.71 Aligned_cols=84 Identities=8% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC---
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--- 87 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~--- 87 (829)
.+++..+ -|-.-++|++ |..|..+..+.|...-+..++.|--...| . +. -++..-+..+++.|.+.+.
T Consensus 68 ~iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-i--d~----yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-V--KE----SQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-C--SH----HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-c--cH----HHHHHHHHcCCCeeehHHhhcC
Confidence 3455554 3777778776 77888899999988766677766433222 1 12 2456666689999988754
Q ss_pred hhHHHHHHHHHHHcCc
Q 043276 88 PSLGSRIFEKANEIGL 103 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm 103 (829)
.+....+...|.++||
T Consensus 139 ~~~l~~l~~~A~~lGl 154 (258)
T 4a29_A 139 ERELESLLEYARSYGM 154 (258)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4678899999999998
No 313
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.87 E-value=2e+02 Score=28.49 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=54.4
Q ss_pred EEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHHH
Q 043276 23 EAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKAN 99 (829)
Q Consensus 23 ~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a~ 99 (829)
.|++|..+ +.|.....+.+.+++++.|..+..... . +.+...+.+..+.+.+.+.||+.... +.....+.++.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 57777644 677788899999999999987754322 2 34445566777777889999888653 44556677888
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 80 ~~~i 83 (306)
T 8abp_A 80 GYDM 83 (306)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 8774
No 314
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=23.10 E-value=4.7e+02 Score=25.84 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=47.6
Q ss_pred CCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCC-ChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHH
Q 043276 20 GWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 98 (829)
Q Consensus 20 gW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~-~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a 98 (829)
+-++|++|....... ....+.+.+++.|.. .....+.... +...-......+.+.++++| ++.....+.-+++.+
T Consensus 125 ~~~~Ig~i~g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI-~~~~D~~a~Gv~~a~ 200 (296)
T 2hqb_A 125 ETHKVGVIAAFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVF-YPAGDGYHVPVVEAI 200 (296)
T ss_dssp SSSEEEEEESCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEE-ECCCTTTHHHHHHHH
T ss_pred cCCeEEEEcCcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEE-EECCCCCCHHHHHHH
Confidence 558999998543322 677888899998874 3222222221 22222333444444556654 455666778889999
Q ss_pred HHcC
Q 043276 99 NEIG 102 (829)
Q Consensus 99 ~~~g 102 (829)
++.|
T Consensus 201 ~e~G 204 (296)
T 2hqb_A 201 KDQG 204 (296)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9987
No 315
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.92 E-value=1.1e+02 Score=30.75 Aligned_cols=89 Identities=11% Similarity=0.011 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCcEEEEEEEe-------CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEE
Q 043276 11 AITAIIKAFGWREAVPIYVD-------NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFI 83 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~d-------d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViI 83 (829)
..++-++.-.=+.|++|..+ +.|.......+.+++++.|..+... ....+.+.....+..+.+.+.+.+|
T Consensus 12 ~~Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 12 QAARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp ---------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEE
Confidence 33444444455678888765 5677788899999999999876542 2222222334566777778899999
Q ss_pred EEcChhHHHHHHHHHHHcCc
Q 043276 84 LHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 84 v~~~~~~~~~i~~~a~~~gm 103 (829)
+....... ..+..+.+.|+
T Consensus 89 i~~~~~~~-~~~~~l~~~~i 107 (305)
T 3huu_A 89 LLYSLKDD-PIEHLLNEFKV 107 (305)
T ss_dssp ESSCBTTC-HHHHHHHHTTC
T ss_pred EeCCcCCc-HHHHHHHHcCC
Confidence 87644322 45666667664
No 316
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=22.60 E-value=2.8e+02 Score=27.60 Aligned_cols=87 Identities=8% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEc--
Q 043276 9 VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM-- 86 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~-- 86 (829)
...+++-...-|-..+.+++ |+.|..+..+.+...-+..++.|.....+ .++ + ++...+..+++.|++..
T Consensus 74 p~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdfi---id~--~--qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDFV---VQP--Y--QIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESCC---CSH--H--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECccc---cCH--H--HHHHHHHcCCCEEEEeccc
Confidence 34567767778999999886 66776677777777666677766533211 122 1 35555568999998853
Q ss_pred -ChhHHHHHHHHHHHcCc
Q 043276 87 -LPSLGSRIFEKANEIGL 103 (829)
Q Consensus 87 -~~~~~~~i~~~a~~~gm 103 (829)
..+....+...+++.||
T Consensus 146 l~~~~l~~l~~~a~~lGl 163 (272)
T 3qja_A 146 LEQSVLVSMLDRTESLGM 163 (272)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 45677888999999997
No 317
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.47 E-value=2.6e+02 Score=27.30 Aligned_cols=79 Identities=5% Similarity=-0.020 Sum_probs=49.7
Q ss_pred CcEEEEEEEe----CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHH
Q 043276 21 WREAVPIYVD----NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFE 96 (829)
Q Consensus 21 W~~V~iI~~d----d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~ 96 (829)
=..|+++..+ +.|.....+.+.+++++.|..+... ....+.+...+.+..+.+.+.+.+|+....... ..+.
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~ 94 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA---DGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEID 94 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE---CCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE---eCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHHH
Confidence 3578888744 5677788899999999999876543 222223334456667767788888887653222 3445
Q ss_pred HHHH-cCc
Q 043276 97 KANE-IGL 103 (829)
Q Consensus 97 ~a~~-~gm 103 (829)
.+.+ .|+
T Consensus 95 ~l~~~~~i 102 (296)
T 3brq_A 95 DIIDAHSQ 102 (296)
T ss_dssp HHHHTCSS
T ss_pred HHHhcCCC
Confidence 5666 563
No 318
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=22.47 E-value=4.5e+02 Score=25.53 Aligned_cols=86 Identities=6% Similarity=0.006 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCcEEEEEE---------------EeCccccchHHHHHHHHHhCC--ceeeeEEecCCCCChhHHHHHH
Q 043276 9 VGAITAIIKAFGWREAVPIY---------------VDNQYGEELIPSLTDALQAID--TRVPYRSVISPLATDDQIEKEL 71 (829)
Q Consensus 9 ~~ai~~ll~~fgW~~V~iI~---------------~dd~yG~~~~~~l~~~l~~~g--i~I~~~~~i~~~~~~~~~~~~l 71 (829)
+..+++.|...|...+.++- ..++-|..-.+.+.+.+++.+ +.|.. ++...+.++..+.+
T Consensus 40 G~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~---~~~~~~~~~~~~~~ 116 (251)
T 1zud_1 40 GTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA---LQQRLTGEALKDAV 116 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE---ECSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE---EeccCCHHHHHHHH
Confidence 45677778888999999873 334557777888888888754 44432 23233333443333
Q ss_pred HHhhcCCCeEEEEEcChhHHHHHHHH-HHHcC
Q 043276 72 YKLFTMQTRVFILHMLPSLGSRIFEK-ANEIG 102 (829)
Q Consensus 72 ~~lk~~~arViIv~~~~~~~~~i~~~-a~~~g 102 (829)
. +.++||.+.+...++..+.+ +.+.+
T Consensus 117 ~-----~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 117 A-----RADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp H-----HCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred h-----cCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 3 46788887776566555544 44444
No 319
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.06 E-value=1.2e+02 Score=29.61 Aligned_cols=80 Identities=10% Similarity=-0.017 Sum_probs=52.6
Q ss_pred EEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC-CeEEEEEcC-hhHHHHHHHHH
Q 043276 23 EAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHML-PSLGSRIFEKA 98 (829)
Q Consensus 23 ~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~-arViIv~~~-~~~~~~i~~~a 98 (829)
+|++|.. ++.|.......+.+++++.|..+..... ....+.+...+.+..+.+.+ .+.||+... .......+..+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST-KDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 4677763 4667788889999999999987754321 11222333445666666667 899988774 34455677778
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 320
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.04 E-value=1.8e+02 Score=28.69 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=50.8
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 99 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~ 99 (829)
+.|++|..+ +.|.......+.+++++.|..+.... ...+.+...+.+..+.+.+.+.+|+...... ...+..+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 468888754 66778888999999999998775432 2222333445667777788998888764222 23455555
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 6663
No 321
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=21.24 E-value=1.4e+02 Score=31.48 Aligned_cols=75 Identities=8% Similarity=-0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHcCC---cEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCC---CeEEEE
Q 043276 11 AITAIIKAFGW---REAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ---TRVFIL 84 (829)
Q Consensus 11 ai~~ll~~fgW---~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~---arViIv 84 (829)
.+.++++.++. +++.+|+...-... .+.+.|++.|+.+.....+..+.+.+.+.+.+..+++.+ +++||-
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIa 115 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVG 115 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 35677887764 77777774433222 356777777877654445556666677777777777666 899998
Q ss_pred EcChh
Q 043276 85 HMLPS 89 (829)
Q Consensus 85 ~~~~~ 89 (829)
.+...
T Consensus 116 vGGGS 120 (375)
T 3rf7_A 116 LGGGS 120 (375)
T ss_dssp EESHH
T ss_pred eCCcH
Confidence 87653
No 322
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.97 E-value=1.4e+02 Score=29.73 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=54.5
Q ss_pred EEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCC-CChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHH
Q 043276 23 EAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPL-ATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 98 (829)
Q Consensus 23 ~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~-~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a 98 (829)
.|++|..+ +.|.......+.+++++.|..+.+.. +.. .+.+...+.+..+.+.+.+.||+.... +.....+.++
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILA--PPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEEC--CCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57777644 67888889999999999998876542 121 133445566777777889988886543 3345667778
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 77774
No 323
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=20.63 E-value=6.2e+02 Score=25.01 Aligned_cols=76 Identities=12% Similarity=-0.022 Sum_probs=44.6
Q ss_pred ceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhc
Q 043276 566 KLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTE 645 (829)
Q Consensus 566 ~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e 645 (829)
.+..+.+..+..+.+.+|+ +++.+.-...........- .+.++-+.-.....+++++|+++-.+.--+.|.-|..
T Consensus 175 ~~~~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAE----APFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCC----EEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 3456667778889999999 7766655444433333322 2333322111223478899999976666666666554
Q ss_pred c
Q 043276 646 G 646 (829)
Q Consensus 646 ~ 646 (829)
.
T Consensus 250 ~ 250 (320)
T 4euo_A 250 A 250 (320)
T ss_dssp H
T ss_pred H
Confidence 3
No 324
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=20.56 E-value=2.7e+02 Score=28.15 Aligned_cols=62 Identities=8% Similarity=0.076 Sum_probs=43.8
Q ss_pred cEEEEEEE----eC-ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 22 REAVPIYV----DN-QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 22 ~~V~iI~~----dd-~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
..|++|+. +| .|.....+.+.+++++.|+.+.+... .. +.+....+..+.+.+.+.||+.+.
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~--~~--~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTA--ST--DAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEEC--CS--GGGHHHHHHHHHHTTCSEEEEEST
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeC--CC--HHHHHHHHHHHHHcCCCEEEECCh
Confidence 47889885 23 46667778888889999988765443 12 234456677787788999998764
No 325
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.41 E-value=4.2e+02 Score=23.51 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=41.7
Q ss_pred cEEEEEEEeCccc--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhH----HHHHH
Q 043276 22 REAVPIYVDNQYG--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL----GSRIF 95 (829)
Q Consensus 22 ~~V~iI~~dd~yG--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~----~~~i~ 95 (829)
++|.||| .+.|| +..++.+.+.+++.|+.+.... +.. . .+....+..+. ..+.+|+.+..-. ...++
T Consensus 5 ~kv~IvY-~S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~~-~--~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l 77 (159)
T 3fni_A 5 TSIGVFY-VSEYGYSDRLAQAIINGITKTGVGVDVVD-LGA-A--VDLQELRELVG--RCTGLVIGMSPAASAASIQGAL 77 (159)
T ss_dssp CEEEEEE-CTTSTTHHHHHHHHHHHHHHTTCEEEEEE-SSS-C--CCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHH
T ss_pred CEEEEEE-ECCChHHHHHHHHHHHHHHHCCCeEEEEE-CcC-c--CCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHH
Confidence 4788888 55677 5778888888988888754332 221 1 02333344443 3566666554321 13455
Q ss_pred HHHHHcCc
Q 043276 96 EKANEIGL 103 (829)
Q Consensus 96 ~~a~~~gm 103 (829)
.......+
T Consensus 78 ~~l~~~~~ 85 (159)
T 3fni_A 78 STILGSVN 85 (159)
T ss_dssp HHHHHHCC
T ss_pred HHHHhhcc
Confidence 55544443
No 326
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.33 E-value=4.2e+02 Score=22.93 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=54.2
Q ss_pred EEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh----HHHHHHHHH
Q 043276 23 EAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS----LGSRIFEKA 98 (829)
Q Consensus 23 ~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~----~~~~i~~~a 98 (829)
+|.+-....|.-.-+...+...|+..|..|.+.-.. .+.+ +.+...++.++++|.+.+... .+..+..+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~---~p~e---~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL---SPQE---LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE---ECHH---HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC---CCHH---HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 455555566655566778888899999998865431 1122 345555567899998887543 345566777
Q ss_pred HHcCccccCeEEEEcCc
Q 043276 99 NEIGLMNKGCVWIMTDG 115 (829)
Q Consensus 99 ~~~gm~~~~~vwI~t~~ 115 (829)
++.|.. .-.+|++...
T Consensus 79 ~~~g~~-~i~v~vGG~~ 94 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGNI 94 (137)
T ss_dssp HHTTCT-TCEEEEEESC
T ss_pred HhcCCC-CCEEEEECCC
Confidence 777742 2346666543
Done!