Query 043276
Match_columns 829
No_of_seqs 479 out of 3247
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 05:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043276.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043276hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ewka_ c.93.1.1 (A:) Metabotr 100.0 1.3E-31 9.8E-36 303.2 27.1 256 1-267 169-467 (477)
2 d1dp4a_ c.93.1.1 (A:) Hormone 99.9 5.6E-26 4.1E-30 252.4 27.2 265 1-295 126-416 (425)
3 d2a5sa1 c.94.1.1 (A:7-142,A:14 99.9 8.7E-27 6.4E-31 243.5 14.9 220 334-664 50-277 (277)
4 d1pb7a_ c.94.1.1 (A:) N-methyl 99.9 1.3E-25 9.3E-30 236.3 13.0 239 306-665 36-289 (289)
5 d1wdna_ c.94.1.1 (A:) Glutamin 99.9 2.8E-24 2E-28 216.7 18.0 219 309-660 1-221 (223)
6 d1mqia_ c.94.1.1 (A:) Glutamat 99.9 3.9E-24 2.8E-28 221.1 17.5 242 308-664 2-260 (260)
7 d1jdpa_ c.93.1.1 (A:) Hormone 99.9 4.3E-23 3.1E-27 226.7 22.9 247 1-270 132-395 (401)
8 d1ii5a_ c.94.1.1 (A:) Glutamat 99.9 3E-23 2.2E-27 209.5 18.9 223 305-658 1-226 (226)
9 d1xt8a1 c.94.1.1 (A:10-257) Pu 99.9 2.1E-22 1.5E-26 206.2 16.1 221 307-658 10-232 (248)
10 d1lsta_ c.94.1.1 (A:) Lysine-, 99.8 5.5E-21 4E-25 194.2 16.4 221 308-659 4-233 (238)
11 d2f34a1 c.94.1.1 (A:5-116,A:11 99.8 4.5E-21 3.3E-25 195.5 12.6 232 309-658 1-246 (246)
12 d1usga_ c.93.1.1 (A:) Leucine- 99.8 6.2E-18 4.5E-22 181.4 19.3 220 1-258 117-340 (346)
13 d1qo0a_ c.93.1.1 (A:) Amide re 99.7 4.6E-16 3.3E-20 168.7 23.1 229 1-262 114-348 (373)
14 d3ckma1 c.93.1.1 (A:257-573) Y 99.3 3.4E-12 2.5E-16 133.9 15.2 210 1-261 102-316 (317)
15 d2ozza1 c.94.1.1 (A:1-228) Hyp 97.9 3.6E-06 2.6E-10 82.5 5.7 118 532-658 101-221 (228)
16 d1r3jc_ f.14.1.1 (C:) Potassiu 96.7 0.004 2.9E-07 51.5 9.8 75 448-526 20-96 (103)
17 d1al3a_ c.94.1.1 (A:) Cofactor 95.8 0.052 3.8E-06 51.8 14.1 197 306-646 4-207 (237)
18 d1xl4a2 f.14.1.1 (A:23-138) In 95.5 0.032 2.3E-06 46.9 9.7 61 466-526 54-116 (116)
19 d2fyia1 c.94.1.1 (A:88-307) Ly 95.2 0.22 1.6E-05 46.3 15.8 205 307-655 5-216 (220)
20 d1p7ba2 f.14.1.1 (A:36-151) In 93.5 0.16 1.2E-05 42.3 9.3 61 464-524 53-115 (116)
21 d1utha_ c.94.1.1 (A:) LysR-typ 91.1 0.98 7.1E-05 41.3 12.7 85 305-421 9-93 (219)
22 d1xs5a_ c.94.1.1 (A:) Putative 90.6 0.36 2.6E-05 45.8 9.0 41 342-392 18-58 (240)
23 d2esna2 c.94.1.1 (A:92-303) Pr 90.3 1.9 0.00014 38.8 13.9 60 306-393 6-65 (212)
24 d1us5a_ c.94.1.1 (A:) Putative 89.1 0.81 5.9E-05 44.8 10.6 58 532-595 107-171 (298)
25 d1ixca2 c.94.1.1 (A:90-294) Ly 86.7 5.1 0.00037 35.0 14.1 46 339-394 15-60 (205)
26 d1i6aa_ c.94.1.1 (A:) Hydrogen 85.8 0.36 2.6E-05 44.0 5.2 83 307-421 4-86 (212)
27 d1vlja_ e.22.1.2 (A:) NADH-dep 85.4 0.97 7.1E-05 46.3 8.9 87 11-97 24-113 (398)
28 d1rrma_ e.22.1.2 (A:) Lactalde 82.5 0.83 6E-05 46.7 6.7 80 10-89 19-98 (385)
29 d2nzug1 c.93.1.1 (G:58-332) Gl 78.7 2.5 0.00018 40.1 8.5 109 5-113 104-216 (275)
30 d1o2da_ e.22.1.2 (A:) Alcohol 78.1 3.1 0.00023 41.6 9.3 78 11-89 19-97 (359)
31 d1lnqa2 f.14.1.1 (A:19-98) Pot 78.0 0.48 3.5E-05 36.3 2.2 52 472-523 27-80 (80)
32 d1vmea1 c.23.5.1 (A:251-398) R 72.0 21 0.0016 29.7 12.2 91 22-117 4-102 (148)
33 d1jq5a_ e.22.1.2 (A:) Glycerol 65.0 6 0.00043 39.5 7.8 76 11-89 21-96 (366)
34 d1jyea_ c.93.1.1 (A:) Lac-repr 63.0 13 0.00097 34.7 9.7 105 6-112 103-210 (271)
35 d1dbqa_ c.93.1.1 (A:) Purine r 55.8 20 0.0015 33.2 9.6 108 6-113 104-214 (282)
36 d2h8pc1 f.14.1.1 (C:22-78) Pot 53.0 14 0.001 25.6 5.4 41 442-486 14-54 (57)
37 d1y5ea1 c.57.1.1 (A:12-166) Mo 52.2 21 0.0015 30.2 8.1 64 23-88 4-71 (155)
38 d1mkza_ c.57.1.1 (A:) MoaB {Es 51.8 26 0.0019 30.1 8.8 69 18-88 5-77 (170)
39 d1byka_ c.93.1.1 (A:) Trehalos 50.4 23 0.0017 32.4 8.9 96 4-103 98-196 (255)
40 d1dbqa_ c.93.1.1 (A:) Purine r 50.1 19 0.0014 33.3 8.4 86 22-113 1-88 (282)
41 d1nh8a1 c.94.1.1 (A:1-210) ATP 49.2 25 0.0018 31.5 8.2 97 535-643 104-203 (210)
42 d2dria_ c.93.1.1 (A:) D-ribose 44.7 18 0.0013 33.3 7.1 78 23-103 3-83 (271)
43 d1jyea_ c.93.1.1 (A:) Lac-repr 42.5 26 0.0019 32.5 7.8 78 24-103 3-82 (271)
44 d1uuya_ c.57.1.1 (A:) Plant CN 42.4 38 0.0028 28.7 8.2 64 23-88 5-79 (161)
45 d1guda_ c.93.1.1 (A:) D-allose 41.3 23 0.0017 32.9 7.3 80 23-103 3-85 (288)
46 d2ftsa3 c.57.1.2 (A:499-653) G 38.5 34 0.0025 28.8 7.2 63 23-88 2-76 (155)
47 d2g2ca1 c.57.1.1 (A:1-163) Put 38.2 17 0.0013 31.1 5.1 64 23-88 4-76 (163)
48 d8abpa_ c.93.1.1 (A:) L-arabin 36.3 43 0.0031 31.2 8.5 77 23-103 3-82 (305)
49 d1h3da1 c.94.1.1 (A:5-224) ATP 34.6 92 0.0067 27.7 9.8 86 532-630 112-197 (220)
50 d1tjya_ c.93.1.1 (A:) AI-2 rec 34.2 26 0.0019 32.8 6.5 80 22-103 4-86 (316)
51 d1twya_ c.94.1.1 (A:) ABC tran 31.8 43 0.0031 30.4 7.3 50 374-423 38-87 (249)
52 d1e5da1 c.23.5.1 (A:251-402) R 31.8 1.2E+02 0.0091 24.5 11.2 74 22-103 3-84 (152)
53 d1uz5a3 c.57.1.2 (A:181-328) M 31.6 58 0.0043 27.0 7.5 64 23-89 2-77 (148)
54 d1hv8a2 c.37.1.19 (A:211-365) 30.1 61 0.0044 26.9 7.4 69 8-84 16-84 (155)
55 d1zhva2 d.58.18.8 (A:62-127) H 29.3 26 0.0019 24.9 3.8 62 20-81 1-65 (66)
56 d1jx6a_ c.93.1.1 (A:) Quorum-s 29.3 83 0.006 29.7 9.4 80 23-102 42-126 (338)
57 d2nqra3 c.57.1.2 (A:178-326) M 28.9 1.1E+02 0.0084 25.1 8.9 72 23-97 2-90 (149)
58 d2qy9a2 c.37.1.10 (A:285-495) 28.8 1.1E+02 0.0077 27.1 9.1 72 12-88 29-101 (211)
59 d1fuka_ c.37.1.19 (A:) Initiat 28.8 92 0.0067 26.0 8.5 92 3-112 9-100 (162)
60 d2fr1a1 c.2.1.2 (A:1657-1915) 28.8 1.3E+02 0.0093 27.0 10.4 46 8-54 21-66 (259)
61 d1di6a_ c.57.1.1 (A:) MogA {Es 28.3 66 0.0048 28.0 7.3 64 23-88 4-75 (190)
62 d1jlja_ c.57.1.1 (A:) Gephyrin 27.6 74 0.0054 26.8 7.7 64 23-88 4-76 (169)
63 d1xmpa_ c.23.8.1 (A:) N5-CAIR 27.2 97 0.0071 25.8 7.9 61 24-86 4-64 (155)
64 d1o4va_ c.23.8.1 (A:) N5-CAIR 26.8 1.2E+02 0.0084 25.8 8.4 64 23-88 2-65 (169)
65 d1qcza_ c.23.8.1 (A:) N5-CAIR 25.9 75 0.0055 26.9 7.0 63 23-87 3-65 (163)
66 d1ycga1 c.23.5.1 (A:251-399) N 25.0 1.6E+02 0.012 23.6 10.7 73 22-102 3-83 (149)
67 d1jx6a_ c.93.1.1 (A:) Quorum-s 23.1 1.1E+02 0.0083 28.6 9.1 97 5-103 154-255 (338)
68 d2fvya1 c.93.1.1 (A:2-306) Gal 23.1 90 0.0066 28.5 8.1 77 23-102 3-83 (305)
69 d2j0sa2 c.37.1.19 (A:244-411) 22.6 1.2E+02 0.0087 25.4 8.0 74 3-83 16-89 (168)
70 d1yx1a1 c.1.15.7 (A:3-252) Hyp 22.4 73 0.0053 28.7 7.0 75 11-86 23-101 (250)
71 d2f7wa1 c.57.1.1 (A:2-174) Mog 22.0 84 0.0061 26.6 6.9 63 23-87 4-74 (173)
72 d1byka_ c.93.1.1 (A:) Trehalos 21.3 61 0.0045 29.2 6.2 65 22-89 3-69 (255)
73 d1p99a_ c.94.1.1 (A:) Putative 21.1 38 0.0028 30.9 4.6 41 342-392 14-54 (255)
74 d1u11a_ c.23.8.1 (A:) N5-CAIR 20.7 1.3E+02 0.0092 25.2 7.4 62 23-86 4-65 (159)
75 d1a53a_ c.1.2.4 (A:) Indole-3- 20.2 1.5E+02 0.011 26.8 8.4 84 11-103 67-153 (247)
76 d1wu2a3 c.57.1.2 (A:181-324) M 20.1 1.1E+02 0.0081 25.0 6.9 63 23-88 4-80 (144)
No 1
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.98 E-value=1.3e-31 Score=303.17 Aligned_cols=256 Identities=18% Similarity=0.255 Sum_probs=210.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--C
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--Q 78 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~ 78 (829)
|+|+|..|++|+++|+++|||++|++||++|+||+.+++.|++++++.|+||++.+.++...++.++.+.+.+|+++ .
T Consensus 169 t~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~ 248 (477)
T d1ewka_ 169 VVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPK 248 (477)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTT
T ss_pred ecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhhccC
Confidence 68999999999999999999999999999999999999999999999999999999998877788899999999865 7
Q ss_pred CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHH-------
Q 043276 79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFR------- 151 (829)
Q Consensus 79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~------- 151 (829)
+||||++++...+..++++|.++||++ ++.||++++|......... ......|.+++.+..+..+++++|+
T Consensus 249 ~rVIv~~~~~~~~~~ll~~a~~~g~~g-~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 326 (477)
T d1ewka_ 249 ARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVIEG-YEVEANGGITIKLQSPEVRSFDDYFLKLRLDT 326 (477)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHHTT-CHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred ceEEEEecCHHHHHHHHHHHHHcCccC-CceEEEecccccchhhccc-cccccCcceEeeeccccchhHHHHHHhcCccc
Confidence 999999999999999999999999974 5789999998765433322 3345778899999999999888764
Q ss_pred --------HHHHHhhcccCCCCCc------------------cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCC
Q 043276 152 --------VRWKRKFLQENPSLFD------------------AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSS 205 (829)
Q Consensus 152 --------~~w~~~~~~~~~~~~~------------------~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~ 205 (829)
+.|+..|+|..+.... ...+.+++++|||||++|+|||++..+.+....
T Consensus 327 ~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~----- 401 (477)
T d1ewka_ 327 NTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHV----- 401 (477)
T ss_dssp CCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCS-----
T ss_pred CCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----
Confidence 4699999997653211 112457889999999999999998765432110
Q ss_pred CCCCCccccCCCChHHHHHHHhccceeccccc-EEEe-cCccccceEEEEEcc---CC---cEEEEEecC
Q 043276 206 NATDLEAFGISQNGPKLLQALSSIRFRGLTGD-YIFV-DGQLQSSAFEIINVN---NG---ARGVGFWSP 267 (829)
Q Consensus 206 ~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~-~~F~-~G~~~~~~y~I~n~~---~g---~~~VG~w~~ 267 (829)
..|.... ...|++|+++|++++|+|++|. +.|+ +||+. +.|+|+|++ ++ +++||.|++
T Consensus 402 --~~~~~~~-~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~-~~y~I~n~q~~~~~~~~~~~VG~w~~ 467 (477)
T d1ewka_ 402 --GLCDAMK-PIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE 467 (477)
T ss_dssp --SCCGGGS-SCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CCEEEEEEEECSSSCEEEEEEEEEET
T ss_pred --CcccCCC-cCCHHHHHHHHhcCeeECCCCCEEEECCCCCcc-ceEEEEEEEECCCCcEEEEEEEEEeC
Confidence 1122222 2358999999999999999995 8897 99985 899999998 23 799999986
No 2
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.94 E-value=5.6e-26 Score=252.37 Aligned_cols=265 Identities=16% Similarity=0.173 Sum_probs=202.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHH------HHHHHhCCceeeeEEecCCCCChhHHHHHHHHh
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSL------TDALQAIDTRVPYRSVISPLATDDQIEKELYKL 74 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l------~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l 74 (829)
|+|+|..|+.++++++++|+|++|++||.+|+||......+ .+...+.++++......+.. .+++...++.+
T Consensus 126 ~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 203 (425)
T d1dp4a_ 126 TGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGD--PDHYPKLLRAV 203 (425)
T ss_dssp CSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEEEEEECTTC--GGGHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhccCceEEEEEeccccccchhhHHHHHHHHHHHHHhcceEEeeeeecCCc--hhHHHHHHHHh
Confidence 67999999999999999999999999999999998654333 34455667888776655443 44555555554
Q ss_pred hcCCCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccC---------------CccccccccceEEEEe
Q 043276 75 FTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL---------------EPSVTDSMQGVIGVRP 139 (829)
Q Consensus 75 k~~~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~---------------~~~~~~~~~g~l~~~~ 139 (829)
+ +.+++||+.+..+.+..++++|+++||...+|+||.++.|....... ........++++++.+
T Consensus 204 ~-~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (425)
T d1dp4a_ 204 R-RKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITY 282 (425)
T ss_dssp H-HHCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEE
T ss_pred h-hcceeEEEecchhHHHHHHHHHHHhCCCCCceEEEEecccccccccccccccccceeeccchhhHHHHHHhheeeecc
Confidence 4 56789999999999999999999999999999999998765322110 0123345778899999
Q ss_pred ccCCChhHHHHHHHHHHhhcccCC-CCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCC
Q 043276 140 YVPKTKALENFRVRWKRKFLQENP-SLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQN 218 (829)
Q Consensus 140 ~~~~~~~~~~F~~~w~~~~~~~~~-~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (829)
..+.++.+.+|...+++.+...+. ......++.+++++||||+++|+|++++..+... ..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~------------------~~~ 344 (425)
T d1dp4a_ 283 KEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGT------------------VTD 344 (425)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC------------------TTC
T ss_pred CCCCChHHHHHHHHHHHHhhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCC------------------CCC
Confidence 889999999988877665433221 1122346788999999999999999998655321 234
Q ss_pred hHHHHHHHhccceecccccEEEe-cCccccceEEEEEcc--CC-cEEEEEecCCCCcccccCCCccccCCccceecCCCC
Q 043276 219 GPKLLQALSSIRFRGLTGDYIFV-DGQLQSSAFEIINVN--NG-ARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDS 294 (829)
Q Consensus 219 g~~l~~~L~~~~f~G~tG~~~F~-~G~~~~~~y~I~n~~--~g-~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~ 294 (829)
|.+|+++|++++|+|++|++.|+ ||++. +.|+|++++ +| ++.||.|++.+..... .+.++|+|||+.
T Consensus 345 ~~~l~~~l~~~~f~G~tG~v~fd~nGdr~-~~y~i~~~~~~~~~~~~vg~~~~~~~~~~~--------~~~~~i~W~~~~ 415 (425)
T d1dp4a_ 345 GENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA--------VSEHKLYWPLGY 415 (425)
T ss_dssp HHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE--------STTCCCCCTTSS
T ss_pred HHHHHHHHhCCeEecCCeeEEECCCCCcc-cceEEEEEECCCCeEEEEEEEECCCCeEEe--------cCCceeECCCCC
Confidence 78999999999999999999997 99995 899999998 33 8999999976553322 245779999986
Q ss_pred C
Q 043276 295 T 295 (829)
Q Consensus 295 ~ 295 (829)
.
T Consensus 416 ~ 416 (425)
T d1dp4a_ 416 P 416 (425)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=99.94 E-value=8.7e-27 Score=243.48 Aligned_cols=220 Identities=20% Similarity=0.312 Sum_probs=176.9
Q ss_pred CceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccccccccceeccccccccccc
Q 043276 334 ETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESG 413 (829)
Q Consensus 334 ~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~ 413 (829)
..++.|||+||+++||++|||++++.+++.+..+...+++|++++.+|.+|++|++++++++|++|.+.++||.||+.++
T Consensus 50 ~~~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~~~~ 129 (277)
T d2a5sa1 50 KKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG 129 (277)
T ss_dssp EEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEC
T ss_pred ccceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcccCCceecc
Confidence 45789999999999999999987777766544333467899999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcCccccc
Q 043276 414 VSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVI 493 (829)
Q Consensus 414 ~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 493 (829)
.+++++++.... +.+.++
T Consensus 130 ~~ilv~k~~~~~-~~~~~~------------------------------------------------------------- 147 (277)
T d2a5sa1 130 ISVMVSRQVTGL-SDKKFQ------------------------------------------------------------- 147 (277)
T ss_dssp EEEEEETCCCST-TSHHHH-------------------------------------------------------------
T ss_pred eEEEEecCcccC-ChhHhc-------------------------------------------------------------
Confidence 999999765331 111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCcc----ceee
Q 043276 494 SNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDER----KLVV 569 (829)
Q Consensus 494 s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~----~~~~ 569 (829)
+..|+. .+.++|+..++....++++. ++.. ....
T Consensus 148 ----------------------------------------~~~~~~-~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~~~~ 185 (277)
T d2a5sa1 148 ----------------------------------------RPHDYS-PPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFN 185 (277)
T ss_dssp ----------------------------------------SGGGSS-SCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGC
T ss_pred ----------------------------------------Cccccc-hheeeeccchhhHHHHHHHh-hhhhcceEEEec
Confidence 112221 24478889999888888763 2221 2235
Q ss_pred cCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC--CCceEEeC--cccccCCceeeecCCCCchhhHHHHHHhhhc
Q 043276 570 YNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH--CSKYTMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILNVTE 645 (829)
Q Consensus 570 ~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--c~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e 645 (829)
+.+.++++++|.+|+ +||++.+.+.+.|+.++. |+ +..++ ..+...+++|+++||+||++.||++|..|.+
T Consensus 186 ~~~~~~~~~~l~~G~----~Da~i~d~~~~~y~~~~~~~~~-l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~~l~~ 260 (277)
T d2a5sa1 186 QRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVG 260 (277)
T ss_dssp CSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCC----cceecccHHHHHHHHhhCCCCc-EEEecCCCCcCcceEEEEEeCChHHHHHHHHHHHHHHH
Confidence 678899999999999 999999999999988875 65 55553 4577788999999999999999999999999
Q ss_pred cChhHHHHHHHccCCCCCC
Q 043276 646 GDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 646 ~G~~~~~~~~w~~~~~~c~ 664 (829)
+|.+++|.+||| .+.|.
T Consensus 261 ~G~~~~L~~KW~--~g~~~ 277 (277)
T d2a5sa1 261 DGEMEELETLWL--TGICH 277 (277)
T ss_dssp HTHHHHHHHHHT--CCCCC
T ss_pred CCHHHHHHhhhc--CCCCC
Confidence 999999999999 56773
No 4
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.92 E-value=1.3e-25 Score=236.29 Aligned_cols=239 Identities=18% Similarity=0.291 Sum_probs=189.9
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCC------CCCCCCCChhHHHH
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQ------PDGTSSGSYNDLIY 379 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~------~~g~~ng~~~~li~ 379 (829)
.++.+++|+. +.++|+.+.+ .++++.||++||+++||++||+++++..++... ..+..+++|++++.
T Consensus 36 ~~~~~~~~~~--~~~pp~~~~~-----~~~~~~G~~vDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~~~~~~~w~~~~~ 108 (289)
T d1pb7a_ 36 VKKVICTGPN--DTSPGSPRHT-----VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMG 108 (289)
T ss_dssp CCCEEEEEEC----------CE-----EEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHH
T ss_pred cCceEEeecc--CCCCCccccC-----CCCceEEEhHHHHHHHHHHhCCcEEEEEccccccccccccccccccChhHhhh
Confidence 4678888887 5556777655 367999999999999999999866555544221 11235678999999
Q ss_pred hHhcCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhc
Q 043276 380 QVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEH 459 (829)
Q Consensus 380 ~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~ 459 (829)
+|..|++|++++++++|++|.+.++||.||+..+.++++++....
T Consensus 109 ~l~~g~~Di~~~~~s~t~eR~~~~~Fs~Py~~~~~~l~vrk~~~~----------------------------------- 153 (289)
T d1pb7a_ 109 ELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRI----------------------------------- 153 (289)
T ss_dssp HHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCC-----------------------------------
T ss_pred hhhhhheeEEeeccccCHHHHHhcccccccceeeeEEEEECCCCc-----------------------------------
Confidence 999999999999999999999999999999999999999966532
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHH
Q 043276 460 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLI 539 (829)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~ 539 (829)
...+++.
T Consensus 154 -------------------------------------------------------------------------~~~~~~~ 160 (289)
T d1pb7a_ 154 -------------------------------------------------------------------------TGINDPR 160 (289)
T ss_dssp -------------------------------------------------------------------------CSTTCHH
T ss_pred -------------------------------------------------------------------------ccccchh
Confidence 1122221
Q ss_pred h----CCCcEEEEeCchHHHHHHhcC-----CCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCce
Q 043276 540 K----RGDNVGYQKGSFVLGILKQLG-----FDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKY 610 (829)
Q Consensus 540 ~----~~~~vg~~~~s~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l 610 (829)
. .+..+|+..++....+++... ++...+..+++.++++++|..|+ +||++.+...+.++..++|+ +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----~da~i~d~~~~~~~~~~~~~-l 235 (289)
T d1pb7a_ 161 LRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCD-L 235 (289)
T ss_dssp HHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-E
T ss_pred hcCCceeEEEEEeccHHHHHHHHhhhhhhhccccceEEEcCCHHHHHHHHhCCC----eEEEEehhhHHHHHHhhCCC-E
Confidence 1 123678888888888876521 12345667899999999999999 99999999999999999995 8
Q ss_pred EEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCCC
Q 043276 611 TMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 665 (829)
Q Consensus 611 ~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~ 665 (829)
.++++.+...+++|+++||+||++.||++|..++++|.+++|.+|||+ ...|+.
T Consensus 236 ~~~~~~~~~~~~~~a~~k~~~l~~~in~al~~l~~~G~~~~l~~Kw~~-~~~c~~ 289 (289)
T d1pb7a_ 236 VTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECDS 289 (289)
T ss_dssp EECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCCC
T ss_pred EEeccccCceeEEEEEcCChHHHHHHHHHHHHHHHCCHHHHHHHhccC-CCCCCC
Confidence 999999989999999999999999999999999999999999999996 578863
No 5
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=2.8e-24 Score=216.67 Aligned_cols=219 Identities=21% Similarity=0.355 Sum_probs=191.6
Q ss_pred eEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccE
Q 043276 309 KLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDA 388 (829)
Q Consensus 309 ~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di 388 (829)
+|+||+. +.|+||.+.+ ++++.||++|+++++++++|++++ +++. +|..++..|.+|++|+
T Consensus 1 kl~v~~~--~~~pP~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~--~~~~---------~~~~~~~~l~~g~~D~ 61 (223)
T d1wdna_ 1 KLVVATD--TAFVPFEFKQ------GDLYVGFDVDLWAAIAKELKLDYE--LKPM---------DFSGIIPALQTKNVDL 61 (223)
T ss_dssp CEEEEEE--SSBTTTBEEE------TTEEESHHHHHHHHHHHHHTCCEE--EEEE---------CGGGHHHHHHTTSSSE
T ss_pred CEEEEeC--CCCCCeEEcc------CCeEEEHHHHHHHHHHHHhCCcEE--EEec---------CHHHHHhhhhhcccee
Confidence 4788885 6788998865 578999999999999999997655 4443 4899999999999999
Q ss_pred EEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 043276 389 VVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGP 468 (829)
Q Consensus 389 ~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~ 468 (829)
++++++.+++|.+.++||.||+..+.++++++....
T Consensus 62 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~-------------------------------------------- 97 (223)
T d1wdna_ 62 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANNND-------------------------------------------- 97 (223)
T ss_dssp EEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCS--------------------------------------------
T ss_pred eecccccchhhhcceEecccEEEeeeEEEEECCCCC--------------------------------------------
Confidence 999999999999999999999999999999855332
Q ss_pred ccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEEE
Q 043276 469 ARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQ 548 (829)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~~ 548 (829)
|++++|| +++++++.
T Consensus 98 ---------------------------------------------------------------i~~~~dl--~~~~v~v~ 112 (223)
T d1wdna_ 98 ---------------------------------------------------------------VKSVKDL--DGKVVAVK 112 (223)
T ss_dssp ---------------------------------------------------------------CSSSTTT--TTCEEEEE
T ss_pred ---------------------------------------------------------------CCCHHHH--CCCEEEEE
Confidence 6888999 58899999
Q ss_pred eCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC-CCceEEeCcccccCCceeeec
Q 043276 549 KGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH-CSKYTMVEPTFKTAGFGFAFP 627 (829)
Q Consensus 549 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~ 627 (829)
.|+....++++. .+..++..+.+.++++++|..|+ +|+++.+...+.+++++. +..+.++++.+...+++++++
T Consensus 113 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~----vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (223)
T d1wdna_ 113 SGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFP 187 (223)
T ss_dssp TTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEC
T ss_pred eecchhhhhhhh-ccccceeeeCCHHHHHHHHhcCC----ccccccccHHhhhhhhhcCCCcceecCCCCCcceEEEEEE
Confidence 999988888875 45667889999999999999999 999999999999888764 556888888888889999999
Q ss_pred CCCC-chhhHHHHHHhhhccChhHHHHHHHccCC
Q 043276 628 LHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKH 660 (829)
Q Consensus 628 k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~~ 660 (829)
|++| |++.||++|..+.++|.+++|.+|||+..
T Consensus 188 k~~~~l~~~in~~i~~~~~~G~~~~i~~ky~g~d 221 (223)
T d1wdna_ 188 KGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 221 (223)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCC
Confidence 9999 99999999999999999999999999743
No 6
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=99.91 E-value=3.9e-24 Score=221.12 Aligned_cols=242 Identities=17% Similarity=0.272 Sum_probs=189.6
Q ss_pred ceEEEecccccCccceEEEee--cCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCC---CCCCChhHHHHhHh
Q 043276 308 KKLRVGVPVKKGFSDFVKVTI--DPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDG---TSSGSYNDLIYQVF 382 (829)
Q Consensus 308 ~~lrv~v~~~~~~~p~~~~~~--~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g---~~ng~~~~li~~l~ 382 (829)
|+|+|++...| ||++.+. ++.+++++++||++||+++|+++||+++++..++.. ..+ ....+|++++..+.
T Consensus 2 ~t~~v~t~~~p---Pf~~~~~~~~~~~~~~k~~G~~idl~~~ia~~lg~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~l~ 77 (260)
T d1mqia_ 2 KTVVVTTILES---PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELV 77 (260)
T ss_dssp CCEEEEECCBT---TTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCBCTTTCCBCHHHHHHH
T ss_pred eEEEEEEcccC---CceEEccCccccCCCCCeEEEHHHHHHHHHHHhCCCeEEEecCCC-ccceeccccccHHHHHHhhh
Confidence 68999987554 5666543 344567899999999999999999986555444321 112 24468999999999
Q ss_pred cCcccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccC
Q 043276 383 LGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVN 462 (829)
Q Consensus 383 ~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~ 462 (829)
.|++|++++++++|++|.+.++||.||+.++.++++++...
T Consensus 78 ~G~~D~~~~~~t~T~eR~~~~~FS~Py~~~~~~~~~~~~~~--------------------------------------- 118 (260)
T d1mqia_ 78 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP--------------------------------------- 118 (260)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS---------------------------------------
T ss_pred cCcHHHHHhhhcCcHHHHhhCcCCCCeEcccceeeeccccc---------------------------------------
Confidence 99999999999999999999999999999999999996542
Q ss_pred CCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCC
Q 043276 463 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRG 542 (829)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~ 542 (829)
+++++||....
T Consensus 119 ---------------------------------------------------------------------~~~~~dl~~~~ 129 (260)
T d1mqia_ 119 ---------------------------------------------------------------------IESAEDLSKQT 129 (260)
T ss_dssp ---------------------------------------------------------------------CCSHHHHHTCS
T ss_pred ---------------------------------------------------------------------hhhhhhhcccc
Confidence 46788887543
Q ss_pred -CcEEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCce
Q 043276 543 -DNVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKY 610 (829)
Q Consensus 543 -~~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l 610 (829)
..+|...++....++....... .......+..+.+..+..+.. .++++.+.....++..+.+..+
T Consensus 130 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T d1mqia_ 130 EIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG---KYAYLLESTMNEYIEQRKPCDT 206 (260)
T ss_dssp SSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTT---SEEEEEEHHHHHHHTTSTTCCE
T ss_pred cceeeEEcchHHHHHHHhccchHHHHHHHHhhccccceeecChHHHHHHHHcCCC---CEEEEecHHHHHHHHhcCCCce
Confidence 3677777777777665432210 112334566777777777662 5677788888888877765458
Q ss_pred EEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCC
Q 043276 611 TMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 664 (829)
Q Consensus 611 ~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~ 664 (829)
..++..+...+++++++|||||++.||++|..++++|.+++|.+|||++...|.
T Consensus 207 ~~~~~~~~~~~~~~a~~k~s~l~~~in~aL~~l~~~G~~~~l~~KwF~~~~~~~ 260 (260)
T d1mqia_ 207 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 260 (260)
T ss_dssp EEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred EEecccCCcceEEEEEcCChHHHHHHHHHHHHHHHCCHHHHHHHHhCCCCCCCC
Confidence 888988989999999999999999999999999999999999999999999995
No 7
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=4.3e-23 Score=226.70 Aligned_cols=247 Identities=15% Similarity=0.185 Sum_probs=190.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhC---CceeeeEEecCCCCChhHHHHHHHHhhcC
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAI---DTRVPYRSVISPLATDDQIEKELYKLFTM 77 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~---gi~I~~~~~i~~~~~~~~~~~~l~~lk~~ 77 (829)
++|++..|+++++++++++||++|++||+|++||+.....+...++.. ++.+......+.. ..+....+ +.+..
T Consensus 132 ~~~~~~~~~~al~~~l~~~~~~~v~il~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 208 (401)
T d1jdpa_ 132 VAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK--DLDLEDIV-RNIQA 208 (401)
T ss_dssp CSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS--CCCHHHHH-HHHHH
T ss_pred eccchHHHHHHHHHHHHhcCCcEEEEEEecCcccchHHHHHHHHHHHhccceEEEEeeccccCc--hhHHHHHH-Hhhcc
Confidence 578999999999999999999999999999999998776666555554 4444433332222 22333333 34456
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCC---------ccccccccceEEEEeccCCChhHH
Q 043276 78 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE---------PSVTDSMQGVIGVRPYVPKTKALE 148 (829)
Q Consensus 78 ~arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~---------~~~~~~~~g~l~~~~~~~~~~~~~ 148 (829)
..+++|+++....+..+++++++.||...+|+||.++.+........ ........+++++....+..+.++
T Consensus 209 ~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T d1jdpa_ 209 SERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFE 288 (401)
T ss_dssp HCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHH
T ss_pred CceeEEEEechHHHHHHHHHHHHhCCCCCCeEEEeecccccccccCchhhccccchhHHHHHhhheeeccccCCCChHHH
Confidence 78899999999999999999999999999999999987653221110 112345678888888888999999
Q ss_pred HHHHHHHHhhcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhc
Q 043276 149 NFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSS 228 (829)
Q Consensus 149 ~F~~~w~~~~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~ 228 (829)
+|.+.|++.+.+... .....++.++.++||||+++|+||+++..... ...++.+|.++|++
T Consensus 289 ~f~~~~~~~~~~~~~-~~~~~~~~~a~~~yDav~l~a~Al~~~~~~~~------------------~~~~~~~l~~~l~~ 349 (401)
T d1jdpa_ 289 KFSMEVKSSVEKQGL-NMEDYVNMFVEGFHDAILLYVLALHEVLRAGY------------------SKKDGGKIIQQTWN 349 (401)
T ss_dssp HHHHHHHHHHHTTTC-CCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcCC-CccccccHHHHHHHHHHHHHHHHHHHHHhcCC------------------CCCCHHHHHHHHhC
Confidence 999999988876422 12224578899999999999999999865431 12347899999999
Q ss_pred cceecccccEEEe-cCccccceEEEEEcc---CC-cEEEEEecCCCC
Q 043276 229 IRFRGLTGDYIFV-DGQLQSSAFEIINVN---NG-ARGVGFWSPEKG 270 (829)
Q Consensus 229 ~~f~G~tG~~~F~-~G~~~~~~y~I~n~~---~g-~~~VG~w~~~~g 270 (829)
++|+|++|.+.|+ +||+. ..|++++++ +| ++.||.|+...+
T Consensus 350 ~~f~G~tG~v~fd~~Gdr~-~~~~~~~~~~~~~g~~~~Vg~~~~~~~ 395 (401)
T d1jdpa_ 350 RTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEVIGDYFGKEG 395 (401)
T ss_dssp EEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred CeEEcCceEEEECCCCCcc-CcEEEEEEEECCCCEEEEEEEEECCCc
Confidence 9999999999997 99985 899999876 45 899999998666
No 8
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}
Probab=99.90 E-value=3e-23 Score=209.54 Aligned_cols=223 Identities=22% Similarity=0.337 Sum_probs=187.3
Q ss_pred CCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
+..+.||||+...| ||.+.+.+ .++++.|+++||++++++++|+ +++++... +|..++.+|.+|
T Consensus 1 g~a~~lrVg~~~~p---P~~~~~~~---~~g~~~G~~~dl~~~ia~~~g~--~~~~v~~~--------~~~~~~~~l~~G 64 (226)
T d1ii5a_ 1 GSAMALKVGVVGNP---PFVFYGEG---KNAAFTGISLDVWRAVAESQKW--NSEYVRQN--------SISAGITAVAEG 64 (226)
T ss_dssp CCSCCEEEEECCCT---TTCEEC--------CEESHHHHHHHHHHHHHTC--CEEEEECS--------CHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCC---CCeEeecC---CCCcEEEHHHHHHHHHHHHhCC--CeEEEEcC--------CHHHHHHHHhcC
Confidence 35688999997544 56665421 2578999999999999999986 56666543 799999999999
Q ss_pred cccEEEeccccccccc--eeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccC
Q 043276 385 EFDAVVGDTTIVFNRS--NYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVN 462 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~--~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~ 462 (829)
++|++++++++|++|. ..++||.||+.+...+++++.+...
T Consensus 65 ~~D~~~~~~~~t~~r~~~~~~~fs~p~~~~~~~~~~~~~~~~~------------------------------------- 107 (226)
T d1ii5a_ 65 ELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPL------------------------------------- 107 (226)
T ss_dssp SCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTT-------------------------------------
T ss_pred CcccccccccchhhhhhhhcccccccccccCcceEEEeccccc-------------------------------------
Confidence 9999999999999986 5689999999999999998665432
Q ss_pred CCCCCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCC
Q 043276 463 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRG 542 (829)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~ 542 (829)
+++++|| .+
T Consensus 108 ---------------------------------------------------------------------~~~~~dl--~~ 116 (226)
T d1ii5a_ 108 ---------------------------------------------------------------------FRSVGDL--KN 116 (226)
T ss_dssp ---------------------------------------------------------------------CSSGGGG--TT
T ss_pred ---------------------------------------------------------------------chhhhhh--hh
Confidence 6889999 48
Q ss_pred CcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCC-ceEEeCcccccCC
Q 043276 543 DNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCS-KYTMVEPTFKTAG 621 (829)
Q Consensus 543 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~-~l~~v~~~~~~~~ 621 (829)
+++++..|+....+++.. ..+++.+++.++.+++|.+|+ +|+++.+...+.+++++... .+.+.+..+...+
T Consensus 117 ~~i~~~~g~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~g~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (226)
T d1ii5a_ 117 KEVAVVRDTTAVDWANFY---QADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEP 189 (226)
T ss_dssp CEEEEETTSHHHHHHHHT---TCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEE
T ss_pred hccccccCchhhhccccc---cceeeccchHHHHHHHHhCCC----eeeEeccchhHHHHHhhcccccccccCcCCCCce
Confidence 899999999888887754 347888999999999999999 99999999999999987642 4677777777788
Q ss_pred ceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 622 FGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 622 ~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
++++++|+++|++.||++|.+|.++|.+++|.+|||+
T Consensus 190 ~~~~~~~~~~l~~~in~~i~~l~~~g~l~~i~~kylG 226 (226)
T d1ii5a_ 190 YGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (226)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcHHHHHHHhhCc
Confidence 9999999999999999999999999999999999984
No 9
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=99.87 E-value=2.1e-22 Score=206.23 Aligned_cols=221 Identities=18% Similarity=0.171 Sum_probs=190.6
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCC-cccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPY-AVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f-~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
.++||||+. +.|+||.+.+ .++++.||++||+++++++|+. .+++++++. +|..++..|.+|+
T Consensus 10 ~g~l~v~v~--~~~pP~~~~~-----~~g~~~G~~~Dl~~~ia~~l~~~~~~i~~~~~---------~~~~~~~~l~~g~ 73 (248)
T d1xt8a1 10 NGVVRIGVF--GDKPPFGYVD-----EKGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNK 73 (248)
T ss_dssp HSSEEEEEC--SEETTTEEEC-----TTSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTS
T ss_pred CCEEEEEEc--CCCCCceEEC-----CCCCEeEHHHHHHHHHHHHhcCCCceeeeeee---------cccccccccccCc
Confidence 568999987 6788998865 4789999999999999999843 356777775 5899999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|++++++.++++|.+.++||.||..++.++++++.. .
T Consensus 74 ~d~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~--~---------------------------------------- 111 (248)
T d1xt8a1 74 VDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS--N---------------------------------------- 111 (248)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC--C----------------------------------------
T ss_pred ccccccccccchhhhcceeecccccccceeEEEecCc--c----------------------------------------
Confidence 9999999999999999999999999999999998542 1
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
+++++|| +++++
T Consensus 112 ------------------------------------------------------------------i~~~~dl--~g~~i 123 (248)
T d1xt8a1 112 ------------------------------------------------------------------ITSVEDL--KDKTL 123 (248)
T ss_dssp ------------------------------------------------------------------CCSSGGG--TTSEE
T ss_pred ------------------------------------------------------------------cchhhhh--cccee
Confidence 5788999 58899
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeCcccccCCceee
Q 043276 546 GYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFA 625 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~ 625 (829)
|+..|+....++++. ++..+++.+++.++++++|..|+ +|+++.+...+.++.+++.+....+++.+...+++++
T Consensus 124 ~v~~gs~~~~~l~~~-~~~~~i~~~~s~~~~~~~l~~g~----vD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (248)
T d1xt8a1 124 LLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPA 198 (248)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCE
T ss_pred eecCCChHHHhhhcc-ccccccccccchhhHHHhhcccc----cccccccHHHHHHHHHhCCcceEecccCCCCceEEEE
Confidence 999999999999874 67778999999999999999999 9999999988888888876533345666677788999
Q ss_pred ecCCCC-chhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 626 FPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 626 ~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
++|++| |++.+|++|.++.++|.++++.++|+.
T Consensus 199 v~k~~~~l~~~in~~l~~i~~~G~~~~i~~k~~~ 232 (248)
T d1xt8a1 199 VKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 232 (248)
T ss_dssp EETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred EECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 999999 999999999999999998877777764
No 10
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=99.84 E-value=5.5e-21 Score=194.16 Aligned_cols=221 Identities=15% Similarity=0.259 Sum_probs=183.3
Q ss_pred ceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCccc
Q 043276 308 KKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFD 387 (829)
Q Consensus 308 ~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~D 387 (829)
++||||+. +.|+||.+.+ ++++++||++||++++++++|+++ ++++. .|...+..+.+|++|
T Consensus 4 ~tl~v~~~--~~~pP~~~~d-----~~G~~~G~~~dl~~~ia~~lg~~~--~~~~~---------~~~~~~~~l~~g~~d 65 (238)
T d1lsta_ 4 QTVRIGTD--TTYAPFSSKD-----AKGEFIGFDIDLGNEMCKRMQVKC--TWVAS---------DFDALIPSLKAKKID 65 (238)
T ss_dssp SEEEEEEC--SCBTTTBEEC-----TTCCEESHHHHHHHHHHHHHTCEE--EEEEC---------CGGGHHHHHHTTSCS
T ss_pred CEEEEEEC--CCCCCeeEEC-----CCCCEEEhHHHHHHHHHHHhCCce--EEeec---------hHHHHHHHHHhcccc
Confidence 68999986 5688999875 478899999999999999999754 45553 589999999999999
Q ss_pred EEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 043276 388 AVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRG 467 (829)
Q Consensus 388 i~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~ 467 (829)
+++++++.+++|.+.++||.||......+++++....
T Consensus 66 ~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------- 102 (238)
T d1lsta_ 66 AIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI------------------------------------------- 102 (238)
T ss_dssp EECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC-------------------------------------------
T ss_pred eeecccchhhhhhhhcccCCCccccCceEEEEecCcc-------------------------------------------
Confidence 9999999999999999999999999999999866432
Q ss_pred CccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcEEE
Q 043276 468 PARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGY 547 (829)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~vg~ 547 (829)
+.+++|| ++.++|+
T Consensus 103 ----------------------------------------------------------------~~~~~dl--~~~~i~v 116 (238)
T d1lsta_ 103 ----------------------------------------------------------------QPTLESL--KGKHVGV 116 (238)
T ss_dssp ----------------------------------------------------------------CSSHHHH--TTCEEEE
T ss_pred ----------------------------------------------------------------cCCcccc--CCCEEEE
Confidence 5789999 4779999
Q ss_pred EeCchHHHHHHhcC-CCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcC-C-CceEEeC-----ccccc
Q 043276 548 QKGSFVLGILKQLG-FDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQH-C-SKYTMVE-----PTFKT 619 (829)
Q Consensus 548 ~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c-~~l~~v~-----~~~~~ 619 (829)
..|+.....+++.. .+..+.....+.+++++++..|+ +|+++.+...+.+.+.+. . .....++ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gr----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (238)
T d1lsta_ 117 LQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFG 192 (238)
T ss_dssp ETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHC
T ss_pred EecchHHHHHHHhhhccccceeeeCCHHHHHHHHhhhc----ccEEEecHHHHHHHHHhCccCCceEEEeeccccccccc
Confidence 99998887776532 23446678889999999999999 999999888877766553 2 2333332 33456
Q ss_pred CCceeeecCCCC-chhhHHHHHHhhhccChhHHHHHHHccC
Q 043276 620 AGFGFAFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 659 (829)
Q Consensus 620 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~~w~~~ 659 (829)
.+++++++|+++ |++.+|++|.+|.++|.+++|.+|||+.
T Consensus 193 ~~~~~a~~k~~~~l~~~in~~l~~~~~~G~~~~I~~kyfg~ 233 (238)
T d1lsta_ 193 DGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (238)
T ss_dssp SSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred ccEEEEEeCCCHHHHHHHHHHHHHHHHCcHHHHHHHHHCCC
Confidence 678999999988 9999999999999999999999999964
No 11
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]}
Probab=99.83 E-value=4.5e-21 Score=195.46 Aligned_cols=232 Identities=18% Similarity=0.311 Sum_probs=173.5
Q ss_pred eEEEecccccCccceEEEeec--CCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCC-CCCCCCChhHHHHhHhcCc
Q 043276 309 KLRVGVPVKKGFSDFVKVTID--PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQP-DGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 309 ~lrv~v~~~~~~~p~~~~~~~--~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~-~g~~ng~~~~li~~l~~g~ 385 (829)
+|+|++.. ++||++.+.+ +..+++++.|||+||+++++++||+++++..++.... .....++|++++..+..|+
T Consensus 1 t~~v~t~~---~~Py~~~~~~~~~~~~n~~~~G~~iDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 77 (246)
T d2f34a1 1 TLIVTTIL---EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHR 77 (246)
T ss_dssp EEEEEECC---BTTTBEECSCCSCCCGGGGEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CEEEEecc---cCCCEEEccCCCccCCCCceEEeHHHHHHHHHHHhCCCeEEEeccccccccccccCchhhhhhhhhhcc
Confidence 46777664 4567766443 5567889999999999999999998766666553321 1135678999999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|++++++++|++|.+.++||.||..+..++++++.....
T Consensus 78 ~D~~i~~~~~t~~R~~~~~fs~P~~~~~~~~~~~~~~~~~---------------------------------------- 117 (246)
T d2f34a1 78 ADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPIDSA---------------------------------------- 117 (246)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETSCCSH----------------------------------------
T ss_pred ccEEEeccccchhhhhcccccCCchhhheeeeeecccccc----------------------------------------
Confidence 9999999999999999999999999999999998664321
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCcE
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNV 545 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~v 545 (829)
.+..++ .+.++
T Consensus 118 -------------------------------------------------------------------~~~~~~--~~~~~ 128 (246)
T d2f34a1 118 -------------------------------------------------------------------DDLAKQ--TKIEY 128 (246)
T ss_dssp -------------------------------------------------------------------HHHHTC--SSSEE
T ss_pred -------------------------------------------------------------------chhhhc--cccee
Confidence 222233 34578
Q ss_pred EEEeCchHHHHHHhcCCCccc-----------eeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeC
Q 043276 546 GYQKGSFVLGILKQLGFDERK-----------LVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVE 614 (829)
Q Consensus 546 g~~~~s~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~ 614 (829)
|+..++....++......... ................. .++++.+.+.+.+..++.++ +..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~ 202 (246)
T d2f34a1 129 GAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTT-----DYALLMESTSIEYVTQRNCN-LTQIG 202 (246)
T ss_dssp ECBTTSHHHHHHHHCCCHHHHHHHHHHHHTHHHHSBSSHHHHHHHHHHS-----SEEEEEEHHHHHHHHHHCTT-EEEES
T ss_pred EEEecceeehhhhhcccchhhhhhhhcchhhHHHHhhhhhHHHHHhhcc-----ceEEEechHHHHHHHhcCCC-eEEec
Confidence 888787766666543221110 01112222222233333 46788888888888888885 88888
Q ss_pred cccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 615 PTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 615 ~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
+.+...+++++++||++|++.||++|.+|.++|.+++|.+|||+
T Consensus 203 ~~~~~~~~~~a~~k~s~l~~~~n~~l~~l~~~G~~~~i~~KwFk 246 (246)
T d2f34a1 203 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWR 246 (246)
T ss_dssp SCSSCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccCCCceEEEEEeCChHHHHHHHHHHHHHHHCCHHHHHHHhhCC
Confidence 88888999999999999999999999999999999999999984
No 12
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=6.2e-18 Score=181.44 Aligned_cols=220 Identities=19% Similarity=0.212 Sum_probs=180.1
Q ss_pred CCCChHHHHHHHHHH-HHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCC
Q 043276 1 GALNDSSQVGAITAI-IKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT 79 (829)
Q Consensus 1 t~psD~~q~~ai~~l-l~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~a 79 (829)
+.|++..+..+++++ .++++|+++++++.+++||+...+.+.+.+++.|++|.....++.. ..++..++.++++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~d~~~~~~~i~~~~~ 194 (346)
T d1usga_ 117 TAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENI 194 (346)
T ss_dssp CSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTC
T ss_pred ccccchhHHHHHHhhhhhccccceeEEecCchhhhHHHHHHHhhhhhcccceEEEEEecCcc--ccchhhHHHHhhccCC
Confidence 357888888888886 5788999999999999999999999999999999999999888766 3478899999999999
Q ss_pred eEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC-CChhHHHHHHHHHHhh
Q 043276 80 RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP-KTKALENFRVRWKRKF 158 (829)
Q Consensus 80 rViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~F~~~w~~~~ 158 (829)
++|++++.......++++++++|+. -.|+.+.+.... .. .....+..+|.++..+... ..+..+.|.+.+++.+
T Consensus 195 d~v~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~ 269 (346)
T d1usga_ 195 DFVYYGGYYPEMGQMLRQARSVGLK---TQFMGPEGVGNA-SL-SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK 269 (346)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCC---CEEEECGGGCCT-TH-HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT
T ss_pred CEEEEeccchhhhheeecccccccc---ceEEeeeeccCc-ch-hhhhhccccceeeecccCCCcCchhhHHHHHHHHHh
Confidence 9999999999999999999999973 245555443321 11 1123456788887766543 3566788999888877
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+. .++.++.++|||+++++.|++++++.+ +..|.++|+++.|+|++|++
T Consensus 270 ~~--------~~~~~a~~~Yda~~~la~Al~~ags~d-----------------------~~~l~~al~~~~~~g~~G~v 318 (346)
T d1usga_ 270 KD--------PSGPYVWITYAAVQSLATALERTGSDE-----------------------PLALVKDLKANGANTVIGPL 318 (346)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHHHCCCC-----------------------HHHHHHHHHHHCEEETTEEE
T ss_pred CC--------CCCchHHHHHHHHHHHHHHHHHHCCCC-----------------------HHHHHHHHHhCCCccceEEE
Confidence 65 356789999999999999999975332 57899999999999999999
Q ss_pred EEe-cCccccceEEEEEcc-CC
Q 043276 239 IFV-DGQLQSSAFEIINVN-NG 258 (829)
Q Consensus 239 ~F~-~G~~~~~~y~I~n~~-~g 258 (829)
.|+ +||+....|.|++|+ +|
T Consensus 319 ~fd~~Gd~~~~~~~v~q~~~dG 340 (346)
T d1usga_ 319 NWDEKGDLKGFDFGVFQWHADG 340 (346)
T ss_dssp CBCTTSSBSSCCCEEEEECTTS
T ss_pred EECCCcCcCCCCEEEEEEEcCC
Confidence 997 999877889999998 76
No 13
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.69 E-value=4.6e-16 Score=168.73 Aligned_cols=229 Identities=15% Similarity=0.122 Sum_probs=180.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.|++..++.++++.+...+|++|++|+.|+.||+...+.+.+.+++.|+.|+....++......++...+.++++.+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd 193 (373)
T d1qo0a_ 114 GGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARAD 193 (373)
T ss_dssp CSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCS
T ss_pred eccChHHHHHHHHHHHHhccCceeeeccCCccccHHHHhhhhhhhhcccCceeEEEEccCccccchhHHHHHHHHhhCCC
Confidence 46899999999999999999999999999999999999999999999999998777666555678999999999999999
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccC--CChhHHHHHHHHHHhh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVP--KTKALENFRVRWKRKF 158 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~F~~~w~~~~ 158 (829)
+|++.+.......+++++.+.|+..... .+.+..+.... ......+.+.|.++..++.+ +++..++|.++|++.+
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~ 270 (373)
T d1qo0a_ 194 VVFSTVVGTGTAELYRAIARRYGDGRRP-PIASLTTSEAE--VAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFF 270 (373)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHCSSCCC-CEEESSCCHHH--HTTSCHHHHTTCEEEESCCTTCCSHHHHHHHHHHHHHS
T ss_pred ceeeccccchHHHHHHHHHHhcCccccc-cccccccchHH--HhhhhhhhhcCceeecccccccchHHHHHHHHHHHHHc
Confidence 9999999999999999988887543333 33333333211 11123456788888776544 5678899999999988
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceecccccE
Q 043276 159 LQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238 (829)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~ 238 (829)
+... .++.++..+|||+++++.|+++++..+ +..+.++|++++|+|.+|.+
T Consensus 271 ~~~~------~~~~~~~~aY~a~~~~a~Ai~~ag~~d-----------------------~~~i~~aL~~~~~~~~~G~i 321 (373)
T d1qo0a_ 271 PENA------TITAWAEAAYWQTLLLGRAAQAAGNWR-----------------------VEDVQRHLYDIDIDAPQGPV 321 (373)
T ss_dssp CTTC------CCCHHHHHHHHHHHHHHHHHHHHTSCC-----------------------HHHHHHHHSSCCEEETTEEE
T ss_pred CCCC------CCChHHHHHHHHHHHHHHHHHHhCCCC-----------------------HHHHHHHHhcCceeCCceeE
Confidence 6531 245688899999999999999986322 67899999999999999999
Q ss_pred EEe--cCccccceEEEEEcc-CC-cEEE
Q 043276 239 IFV--DGQLQSSAFEIINVN-NG-ARGV 262 (829)
Q Consensus 239 ~F~--~G~~~~~~y~I~n~~-~g-~~~V 262 (829)
.|+ +++. .....|.+++ +| +..|
T Consensus 322 ~f~~~~~~~-~~~~~i~q~~~dg~~~vv 348 (373)
T d1qo0a_ 322 RVERQNNHS-RLSSRIAEIDARGVFQVR 348 (373)
T ss_dssp EECTTTSBE-EBCCEEEEECTTSCEEEE
T ss_pred EEcCCCCcc-cCceEEEEEccCCcEEEE
Confidence 996 4454 3455666666 55 3444
No 14
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.34 E-value=3.4e-12 Score=133.89 Aligned_cols=210 Identities=11% Similarity=0.020 Sum_probs=150.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+.+++..|+.++++++...||++|++++.|++||+...+.+.+.+++.|++|.....++.. +. .......+...+.
T Consensus 102 ~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~--~~~~~~~~~~~~d 177 (317)
T d3ckma1 102 YGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP--AD--VTYFVQENNSNTT 177 (317)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST--TH--HHHHHHHSCTTCC
T ss_pred eccCCHHHHHHHHhhhhhcccceeEEeccccccchhHHHHHHHHHHHcCCEEEEEEecccc--ch--hhhhhhhcccCcc
Confidence 3578888999999999889999999999999999999999999999999999988887654 22 2345566778899
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEec---cCCChhHHHHHHHHHHh
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPY---VPKTKALENFRVRWKRK 157 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~F~~~w~~~ 157 (829)
++++.+.+..+..+..++...|+ ..-++..+.+................|++..... .+..+....|.++++..
T Consensus 178 ~i~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (317)
T d3ckma1 178 ALYAVASPTELAEMKGYLTNIVP---NLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGE 254 (317)
T ss_dssp EEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTC
T ss_pred eEEEecChhHHHHHHHHHHHhcc---ccceeeccccccCccccchhhhhhhcCcEEecccccCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998885 3345555444322111222234556777765542 24555666666655443
Q ss_pred hcccCCCCCccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccccCCCChHHHHHHHhccceeccccc
Q 043276 158 FLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGD 237 (829)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~ 237 (829)
++ ...+.+++|||+++++++.. +. .+....|.|++|.
T Consensus 255 ~~----------~~~~~a~gyDa~~l~~~~~~-~~--------------------------------~~~~~~~~G~tG~ 291 (317)
T d3ckma1 255 YQ----------LMRLYAMGADAWLLINQFNE-LR--------------------------------QVPGYRLSGLTGI 291 (317)
T ss_dssp HH----------HHHHHHHHHHHHHHHHTHHH-HH--------------------------------HSTTCCEEETTEE
T ss_pred CC----------CCchHHHHHHHHHHHHHHHH-Hh--------------------------------ccCCCCeecCeEE
Confidence 32 22366779999888765433 21 1223369999999
Q ss_pred EEEe-cCccccceEEEEEccCC-cEE
Q 043276 238 YIFV-DGQLQSSAFEIINVNNG-ARG 261 (829)
Q Consensus 238 ~~F~-~G~~~~~~y~I~n~~~g-~~~ 261 (829)
+.|+ +|+.. ..+.+.++++| ++.
T Consensus 292 ~~fd~~G~~~-r~~~~~~~~~G~~vp 316 (317)
T d3ckma1 292 LSADTNCNVE-RDMTWYQYQDGAIVP 316 (317)
T ss_dssp EEECTTCBEE-EECEEEEEETTEEEE
T ss_pred EEECCCCCEe-ecceEEEEECCEEeE
Confidence 9997 89864 56778877754 444
No 15
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=97.93 E-value=3.6e-06 Score=82.49 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecC-ChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCce
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYN-SHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKY 610 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l 610 (829)
|++++|| +|++||+..++..+.+|.+.+.+...+..+. +..+...+|.+|+ +||++.+.+.......+.....
T Consensus 101 i~~~~dL--kGk~vgv~~~s~~~~~l~~~~~~~~~v~~v~~~~~~~~~al~~G~----vDa~v~~~~~~~~~~~~~~~~~ 174 (228)
T d2ozza1 101 CRKGESG--NVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGD----VDAVIWNVVAENELTMLGLEAT 174 (228)
T ss_dssp EETTCGG--GCCEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHHHHTTEEEE
T ss_pred cCChhhc--CCCEEEecCCChHHHHHHHcCCCccceEEEeCCHHHHHHHHHcCc----eeEEEeCcHHHHHHHhcCcccc
Confidence 6788999 5999999999999888877555544443333 5678999999999 9999888888777766653212
Q ss_pred EEeC--cccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHcc
Q 043276 611 TMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 658 (829)
Q Consensus 611 ~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~ 658 (829)
.... .........++++++.+....+.++ +.+...+.++.++++.
T Consensus 175 ~~~~~~~~~~~~~~vivir~~~~~v~~lv~a---~ie~~e~~~~qk~i~~ 221 (228)
T d2ozza1 175 PLTDDPRFLQATEAVVLTRVDDYPMQQLLRA---VVDKHALLAHQQRVVS 221 (228)
T ss_dssp ECCSCHHHHHTTCEEEEEETTCHHHHHHHHH---HCCHHHHHHHHHHHHT
T ss_pred eeecccccccceeEEEEEcCCcHHHHHHHHH---HHhHHHHHHHHHHHhc
Confidence 2222 2233455578888887654444444 4455567778888874
No 16
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.71 E-value=0.004 Score=51.51 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 043276 448 IFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTV 525 (829)
Q Consensus 448 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~ 525 (829)
++.+.++++.|+..+. ....++.+++|+++.++...| + -.|.+..+|++.++|+++++.+.+..++.+++.++.
T Consensus 20 ~~~s~~~~~~e~~~~~----~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 95 (103)
T d1r3jc_ 20 LAGSYLAVLAERGAPG----AQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG 95 (103)
T ss_dssp HHHHHHHHHHHTTSTT----CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC----cccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777765432 223457899999999999877 4 478999999999999999999999999999998865
Q ss_pred c
Q 043276 526 D 526 (829)
Q Consensus 526 ~ 526 (829)
.
T Consensus 96 ~ 96 (103)
T d1r3jc_ 96 R 96 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Probab=95.84 E-value=0.052 Score=51.84 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=125.7
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
.++.||||+. +. ....+-.+++..+.++.+ ++++++.. ++.+.+++.|.+|+
T Consensus 4 ~~G~LrIg~~--~~----------------~~~~~LP~~l~~f~~~~P-~v~v~l~~---------~~~~~l~~~l~~g~ 55 (237)
T d1al3a_ 4 DKGSLYVATT--HT----------------QARYALPGVIKGFIERYP-RVSLHMHQ---------GSPTQIAEAVSKGN 55 (237)
T ss_dssp CEEEEEEEEC--HH----------------HHHHTSHHHHHHHHHHCT-EEEEEEEE---------CCHHHHHHHHHTTC
T ss_pred CcEEEEEEeE--HH----------------HHHHHHHHHHHHHHHHCC-CcEEEEEE---------CCHHHHHHHHhccC
Confidence 3678999987 22 223455689999999988 56666654 36789999999999
Q ss_pred ccEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 043276 386 FDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDF 465 (829)
Q Consensus 386 ~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~ 465 (829)
+|++++...... ...+ ...|+....++++++......
T Consensus 56 ~D~ai~~~~~~~--~~~l-~~~~l~~~~~~~v~~~~h~la---------------------------------------- 92 (237)
T d1al3a_ 56 ADFAIATEALHL--YDDL-VMLPCYHWNRSIVVTPEHPLA---------------------------------------- 92 (237)
T ss_dssp CSEEEESSCCCT--TSCE-EEEEEEEECEEEEECTTSTTT----------------------------------------
T ss_pred CcEEEEeecccc--cccc-cccccccceEEEEEecCcccc----------------------------------------
Confidence 999996432211 1122 245777778888887443211
Q ss_pred CCCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCc-
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDN- 544 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~- 544 (829)
.....+++||. +.+
T Consensus 93 ---------------------------------------------------------------~~~~~~~~dL~--~~p~ 107 (237)
T d1al3a_ 93 ---------------------------------------------------------------TKGSVSIEELA--QYPL 107 (237)
T ss_dssp ---------------------------------------------------------------TTSCCCHHHHH--TSEE
T ss_pred ---------------------------------------------------------------ccccccchhhc--cCCc
Confidence 01135799996 444
Q ss_pred EEEEeCchH----HHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEe--Ccccc
Q 043276 545 VGYQKGSFV----LGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMV--EPTFK 618 (829)
Q Consensus 545 vg~~~~s~~----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v--~~~~~ 618 (829)
+.+..++.. ..++...+.........++.....+.+..|. ..+++... .+.... .. .+..+ .....
T Consensus 108 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~~~~~~v~~g~----Gi~~~p~~-~v~~~~--~~-~l~~~~~~~~~~ 179 (237)
T d1al3a_ 108 VTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGL----GVGVIASM-AVDPVS--DP-DLVKLDANGIFS 179 (237)
T ss_dssp EEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTS----CEEEEEGG-GCCTTT--CT-TSEEEECBTTBC
T ss_pred ccccccchHHHHHHHHHHHcCCCCcceeecCCHHHHHHHhcCCC----EEEechHH-hhhhhh--CC-CEEEEECCCCCc
Confidence 444444433 3444556666555667788999999999987 44555442 222211 12 23222 34445
Q ss_pred cCCceeeecCCCCchhhHHHHHHhhhcc
Q 043276 619 TAGFGFAFPLHSPLVHDVSKAILNVTEG 646 (829)
Q Consensus 619 ~~~~~~~~~k~spl~~~in~~il~l~e~ 646 (829)
...++++.+|+..+.......|..+.+.
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~Fie~~~~~ 207 (237)
T d1al3a_ 180 HSTTKIGFRRSTFLRSYMYDFIQRFAPH 207 (237)
T ss_dssp CEEEEEEEETTCCCCHHHHHHHHHHCTT
T ss_pred ceEEEEEEeCCCccCHHHHHHHHHHHHH
Confidence 5678999999999888888888766654
No 18
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=95.54 E-value=0.032 Score=46.90 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCCccCccchhHHHHHHHhhhcC--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 043276 466 RGPARHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVD 526 (829)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~ 526 (829)
.+....++.+++|+++.++...| ...|.+..+|++.+++.+.++++.+.-.+-+.+.++.|
T Consensus 54 ~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fsrP 116 (116)
T d1xl4a2 54 ENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 116 (116)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445578899999999999777 34789999999999999999999999888888887765
No 19
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=95.16 E-value=0.22 Score=46.28 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=127.6
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||+... .. .-+-.+++..+.++.+ ++++++.. ++...+...|.+|++
T Consensus 5 sG~l~i~~~~~--~~----------------~~~Lp~~l~~f~~~~P-~i~l~i~~---------~~~~~~~~~l~~g~~ 56 (220)
T d2fyia1 5 SGVLTIATTHT--QA----------------RYSLPEVIKAFRELFP-EVRLELIQ---------GTPQEIATLLQNGEA 56 (220)
T ss_dssp CEEEEEEECHH--HH----------------HHTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSC
T ss_pred CEEEEEEEEHH--HH----------------HHHHHHHHHHHHHHCC-CcEEEEEE---------CCcHHHHHHHHhhhh
Confidence 57899998722 11 1234578999999988 46666655 367899999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 466 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~ 466 (829)
|++++...... ...+. ..|+....++++++......
T Consensus 57 Di~i~~~~~~~--~~~~~-~~~l~~~~~~~v~~~~~~~~----------------------------------------- 92 (220)
T d2fyia1 57 DIGIASERLSN--DPQLV-AFPWFRWHHSLLVPHDHPLT----------------------------------------- 92 (220)
T ss_dssp SEEEESSSSTT--CTTEE-EEEEEEECEEEEEETTCGGG-----------------------------------------
T ss_pred hhhhhcccccc--ccccc-ccccccccceeecccccccc-----------------------------------------
Confidence 99996543322 11222 46777888888888543221
Q ss_pred CCccCccchhHHHHHHHhhhcCccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCCc-E
Q 043276 467 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDN-V 545 (829)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~~-v 545 (829)
...--+++||. +.+ +
T Consensus 93 --------------------------------------------------------------~~~~~~~~dL~--~~~~i 108 (220)
T d2fyia1 93 --------------------------------------------------------------QISPLTLESIA--KWPLI 108 (220)
T ss_dssp --------------------------------------------------------------TSSSCCHHHHT--TSCEE
T ss_pred --------------------------------------------------------------ccCcchhhhhc--ccccc
Confidence 00124688996 433 3
Q ss_pred EEEeCchHH----HHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeC--ccccc
Q 043276 546 GYQKGSFVL----GILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVE--PTFKT 619 (829)
Q Consensus 546 g~~~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~--~~~~~ 619 (829)
....++... ..+.+.+.........++.+...+.+..|. ..+++-+.....+ ..- ++..+. +....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----gi~ilp~~~~~~~---~~~-~l~~l~~~~~~~~ 180 (220)
T d2fyia1 109 TYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGL----GIGLVAEQSSGEQ---EEE-NLIRLDTRHLFDA 180 (220)
T ss_dssp EECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTS----CEEEEEGGGGSTT---CCT-TEEEECCTTTSCC
T ss_pred ccccccchHHHHHHHHhhcccCCceeEEEccHHHHHHHHhhcc----eEEeCcHHHHHHH---hcC-CEEEEeCCCCCCc
Confidence 444444433 344455555555567788888999999987 4555554322111 112 244443 23344
Q ss_pred CCceeeecCCCCchhhHHHHHHhhhccChhHHHHHH
Q 043276 620 AGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDA 655 (829)
Q Consensus 620 ~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~ 655 (829)
..++++.+|+..+...+...|..+++.=..+.+.++
T Consensus 181 ~~~~l~~~~~~~~~~~~~~Fi~~~~~~~~~~~~~~~ 216 (220)
T d2fyia1 181 NTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQ 216 (220)
T ss_dssp EEEEEEEETTCCBCHHHHHHHHHHCSSSCHHHHHHH
T ss_pred eEEEEEEECCCcCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 457888999999888888888777665444444443
No 20
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=93.54 E-value=0.16 Score=42.28 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=49.5
Q ss_pred CCCCCccCccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043276 464 DFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLT 524 (829)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt 524 (829)
+..+....++.+++|+++.++.-.| + ..|.+..+|++.+++.+.++++.+.-++-+.+.++
T Consensus 53 ~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s 115 (116)
T d1p7ba2 53 PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115 (116)
T ss_dssp CCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445678899999999999776 3 46899999999999999999999888887777654
No 21
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
Probab=91.12 E-value=0.98 Score=41.27 Aligned_cols=85 Identities=8% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcC
Q 043276 305 TNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLG 384 (829)
Q Consensus 305 ~~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g 384 (829)
...+++|||+. +.. ...+-..++..+.++.+ ++++++... +...++..|.+|
T Consensus 9 ~~~~~~rI~~~--~~~----------------~~~~lp~ll~~f~~~~P-~v~l~i~~~---------~~~~~~~~l~~g 60 (219)
T d1utha_ 9 ASTRTFNLAMT--DIG----------------EMYFMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESG 60 (219)
T ss_dssp TCCCEEEEECC--HHH----------------HHHHHHHHHHHHHHHCT-TCEEEEECT---------TSSCHHHHHHHT
T ss_pred ccCCEEEEEEc--HHH----------------HHHHHHHHHHHHHHHCC-CCEEEEEec---------cHHHHHHHHhcC
Confidence 44788999987 211 12456788999999987 467776552 457889999999
Q ss_pred cccEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 385 EFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 385 ~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
++|++++....... .+ ...+......+++++..
T Consensus 61 ~~D~~i~~~~~~~~---~~-~~~~l~~~~~~~~~~~~ 93 (219)
T d1utha_ 61 AVDLALGLLPELQT---GF-FQRRLFRHRYVCMFRKD 93 (219)
T ss_dssp SCCEEEECCTTCCT---TE-EEEEEEEECEEEEEETT
T ss_pred Cceeeeeecccccc---cc-hhhhccccccccccccc
Confidence 99999864443222 22 23445556666666643
No 22
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=90.57 E-value=0.36 Score=45.78 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEec
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGD 392 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~ 392 (829)
..+++...++.|+ +++++.+. ++..++.+|..|++|++..+
T Consensus 18 l~~~k~~~k~~Gi--~Ve~v~f~--------~g~~~~~Al~~G~iD~~~~~ 58 (240)
T d1xs5a_ 18 LEIAKEEVKKQHI--ELRIVEFT--------NYVALNEAVMRGDILMNFFQ 58 (240)
T ss_dssp HHHHHHHHHTTTE--EEEEEECS--------CHHHHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHcCC--EEEEEEeC--------ChhhHHHHHHcCCcceeccC
Confidence 4567778888885 56777775 68999999999999997643
No 23
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=90.32 E-value=1.9 Score=38.84 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=43.3
Q ss_pred CCceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCc
Q 043276 306 NEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGE 385 (829)
Q Consensus 306 ~~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~ 385 (829)
..+++|||+... -...+--.++..+.++.+ .+++++... ..+.++.+|.+|+
T Consensus 6 ~~~~~rI~~~~~------------------~~~~~lp~ll~~f~~~~P-~v~i~l~~~---------~~~~~~~~l~~g~ 57 (212)
T d2esna2 6 SQRTFVFAATDY------------------TAFALLPPLMNRLQHSAP-GVRLRLVNA---------ERKLSVEALASGR 57 (212)
T ss_dssp CCCEEEEECCHH------------------HHHHHHHHHHHHHHHHST-TCEEEEECC---------SSSCCHHHHHHTS
T ss_pred CCcEEEEEEcHH------------------HHHHHHHHHHHHHHHHCC-CcEEEEEec---------CcHHHHHHHHHhc
Confidence 467889988711 112344578899999988 577777653 3567899999999
Q ss_pred ccEEEecc
Q 043276 386 FDAVVGDT 393 (829)
Q Consensus 386 ~Di~~~~~ 393 (829)
+|++++..
T Consensus 58 ~Dl~i~~~ 65 (212)
T d2esna2 58 IDFALGYD 65 (212)
T ss_dssp SSEEEECC
T ss_pred cccccccc
Confidence 99998643
No 24
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}
Probab=89.12 E-value=0.81 Score=44.80 Aligned_cols=58 Identities=26% Similarity=0.169 Sum_probs=40.3
Q ss_pred CCCHHHHHhCCCcEEEE-eCchHH----HHHHhcCCCcc--ceeecCChHHHHHHHhcCCcCCceeEEEcc
Q 043276 532 ITDVNLLIKRGDNVGYQ-KGSFVL----GILKQLGFDER--KLVVYNSHEECDELFQKGSANGGIAAAFDE 595 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~-~~s~~~----~~l~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 595 (829)
|+|++||. |+++++- .++... ..|+..+.... ......+..+..++|.+|+ +|+++.-
T Consensus 107 i~s~~DL~--gk~v~~g~~gsg~~~~~~~~l~~~g~~~dd~~~~~~~~~~~~~~al~~g~----iDa~~~~ 171 (298)
T d1us5a_ 107 IRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYT 171 (298)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEE
T ss_pred cCchhhcc--CccccccCCCchHHHHHHHHHHHhCCCcccccceeccchhHHHHHhcCCc----eeEEEEe
Confidence 79999994 8888874 344333 44555555433 2345667889999999999 8887753
No 25
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=86.70 E-value=5.1 Score=34.96 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=36.0
Q ss_pred EeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEeccc
Q 043276 339 GYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTT 394 (829)
Q Consensus 339 G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~~~ 394 (829)
++-..++..+.++.+ .++++... ++.+.++.+|.+|++|++++...
T Consensus 15 ~~Lp~~l~~f~~~~P-~v~l~i~~---------~~~~~l~~~l~~g~~D~~~~~~~ 60 (205)
T d1ixca2 15 RSLPLLLRAFLTSTP-TATVSLTH---------MTKDEQVEGLLAGTIHVGFSRFF 60 (205)
T ss_dssp THHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEESCC
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEE---------CCCccchhhhhhhhccccccccc
Confidence 345678999999988 46776655 35789999999999999986543
No 26
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}
Probab=85.83 E-value=0.36 Score=44.03 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=55.4
Q ss_pred CceEEEecccccCccceEEEeecCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcc
Q 043276 307 EKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEF 386 (829)
Q Consensus 307 ~~~lrv~v~~~~~~~p~~~~~~~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~ 386 (829)
.++||||++ +.+. ..+-.+++..+.++.+ .+++++.. ++...++..+.+|++
T Consensus 4 ~G~lrig~~--~~~~----------------~~~lp~~l~~f~~~~P-~v~l~i~~---------~~~~~~~~~l~~~~~ 55 (212)
T d1i6aa_ 4 SGPLHIGLI--PTVG----------------PYLLPHIIPMLHQTFP-KLEMYLHE---------AQTHQLLAQLDSGKL 55 (212)
T ss_dssp CEEEEEEEC--TTTH----------------HHHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSC
T ss_pred eEEEEEEeE--HHHH----------------HHHHHHHHHHHHHHCC-CcEEEEEE---------CCCccccccccccch
Confidence 367999987 3221 2255688999999988 46666654 256889999999999
Q ss_pred cEEEeccccccccceeccccccccccceEEEEEcc
Q 043276 387 DAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIK 421 (829)
Q Consensus 387 Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~ 421 (829)
|+++....... ..+.+ .+.....+.++++..
T Consensus 56 d~~~~~~~~~~---~~~~~-~~l~~~~~~~~~~~~ 86 (212)
T d1i6aa_ 56 DAVILALVKES---EAFIE-VPLFDEPMLLAIYED 86 (212)
T ss_dssp SEEEEECCGGG---TTSEE-EEEEEEEEEEEEETT
T ss_pred hhhheeccccc---ccccc-eeccccceEEEeecC
Confidence 99986543332 22332 355566667777744
No 27
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=85.45 E-value=0.97 Score=46.33 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCcEEEEEEEeCcccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
-+.++++.+|.+++.+|+.++.+.. +..+.+.+.|++.|+.+.....+...++.+++.+.+..+++.++++||-.+...
T Consensus 24 ~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGGGs 103 (398)
T d1vlja_ 24 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 103 (398)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhcccccCceEEecCCcc
Confidence 4678899999999999997766554 467999999999999876555555566677888888888889999999998764
Q ss_pred --HHHHHHHH
Q 043276 90 --LGSRIFEK 97 (829)
Q Consensus 90 --~~~~i~~~ 97 (829)
++......
T Consensus 104 ~iD~aK~ia~ 113 (398)
T d1vlja_ 104 VVDSAKAVAA 113 (398)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 33444433
No 28
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=82.53 E-value=0.83 Score=46.65 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 10 GAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 10 ~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
+.+.++++.+|.+++-||+...-.-.+..+.+.+.|++.|+++.....+..+++.+++.+.+...++.++++||-.+...
T Consensus 19 ~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 98 (385)
T d1rrma_ 19 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGS 98 (385)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccCCCEEEecCCCc
Confidence 34678899999999999874433334567889999999999876555666677778898999999999999999988753
No 29
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=78.66 E-value=2.5 Score=40.09 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEeCcc---ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCC-e
Q 043276 5 DSSQVGAITAIIKAFGWREAVPIYVDNQY---GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT-R 80 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW~~V~iI~~dd~y---G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~a-r 80 (829)
+..-+..+++.+..-|-+.++++..+... .......+.+++++.|+.+..........+.+.-...+.++..... -
T Consensus 104 ~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (275)
T d2nzug1 104 YEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP 183 (275)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCC
T ss_pred cccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHHHHHHcCCCCCcceEEeccCCHHHHHHHHHHHHhcCCCC
Confidence 34445557778878899999999843322 2455667778888888876533333333333344455555544332 2
Q ss_pred EEEEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
-.|++++...|..++..+.+.|+..++-+.|++
T Consensus 184 ~ai~~~~d~~A~g~~~~l~~~g~~ip~di~vig 216 (275)
T d2nzug1 184 TAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIG 216 (275)
T ss_dssp SEEEESSHHHHHHHHHHHHTTTCCTTTTCEEEE
T ss_pred eEEEecChHHHHHHHHHHhhcCCCCCccceeee
Confidence 346666777888999999999987666666664
No 30
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=78.07 E-value=3.1 Score=41.60 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCcEEEEEEEeCcccc-chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGE-ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~-~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
.+.++++.+| +++.+|+.+..+.. +..+.+.+.|++.|+.+.....+..+++.+++.+.+..+++.++++||-.+...
T Consensus 19 ~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 97 (359)
T d1o2da_ 19 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 97 (359)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhhhhccccCCceEEeccccc
Confidence 4556678888 88989887666654 467999999999999876545566666777888899999999999999988753
No 31
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=77.96 E-value=0.48 Score=36.26 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=44.7
Q ss_pred ccchhHHHHHHHhhhcC-c-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 043276 472 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLL 523 (829)
Q Consensus 472 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~L 523 (829)
++.+++|+++.++.--| + -.|.+..+|++.++|.++++.+.+...+.++++|
T Consensus 27 s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~~l 80 (80)
T d1lnqa2 27 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80 (80)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC
T ss_pred CHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57889999999999876 4 4689999999999999999999888888877653
No 32
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=71.97 E-value=21 Score=29.68 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=55.3
Q ss_pred cEEEEEEEeCccc--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh------hHHHH
Q 043276 22 REAVPIYVDNQYG--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGSR 93 (829)
Q Consensus 22 ~~V~iI~~dd~yG--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~------~~~~~ 93 (829)
++|.||| .+.+| +..++.+.+.|++.|+.+.....-... ..++......+. ..+.+|+.+.. +....
T Consensus 4 ~kv~IiY-~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~--~~d~iiigspt~~~~~~~~~~~ 78 (148)
T d1vmea1 4 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE--RPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRF 78 (148)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CCCHHHHHHHST--TCSEEEEEECEETTEECHHHHH
T ss_pred CEEEEEE-ECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc--ccchhHhhhhHH--HCCEeEEEecccCCccCchHHH
Confidence 4788998 45677 678899999999999987665443222 224545555554 44555554432 35667
Q ss_pred HHHHHHHcCccccCeEEEEcCccc
Q 043276 94 IFEKANEIGLMNKGCVWIMTDGMT 117 (829)
Q Consensus 94 i~~~a~~~gm~~~~~vwI~t~~~~ 117 (829)
++....+..+......-+.+-+|.
T Consensus 79 ~l~~~~~~~~~~k~~~~fgs~g~~ 102 (148)
T d1vmea1 79 TLLEIIDKANYEKPVLVFGVHGWA 102 (148)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHhhcccCCCEEEEEEcCCCc
Confidence 777776655433334445555553
No 33
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.03 E-value=6 Score=39.47 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
.+.+.++.+| +++.+|+....+ ....+.+.+.|++.|+.+.+. .++..++.+++.+....+++.++++||-.+...
T Consensus 21 ~l~~~l~~~g-~r~lvvtd~~~~-~~~~~~l~~~L~~~~i~~~~~-~~~~~p~~~~v~~~~~~~~~~~~D~IiavGGGs 96 (366)
T d1jq5a_ 21 KIANYLEGIG-NKTVVIADEIVW-KIAGHTIVNELKKGNIAAEEV-VFSGEASRNEVERIANIARKAEAAIVIGVGGGK 96 (366)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHH-HHTHHHHHHHHHTTTCEEEEE-ECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcC-CeEEEEECCcHH-HHHHHHHHHHHHHCCCeEEEE-EeCCCCCHHHHHHHHHHhhccCCcEEEEecCCc
Confidence 4677888899 999888744333 333578889999999887644 466666677788888888889999999998653
No 34
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=62.95 E-value=13 Score=34.67 Aligned_cols=105 Identities=7% Similarity=-0.076 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeC--ccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe-EE
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDN--QYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR-VF 82 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd--~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar-Vi 82 (829)
..-+..+++.+...|-++|++|..+. .....-.+.+.+.+++.++++......+. +.......+.++.....+ -.
T Consensus 103 ~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a 180 (271)
T d1jyea_ 103 EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDW--SAMSGFQQTMQMLNEGIVPTA 180 (271)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCS--SHHHHHHHHHHHHHTTCCCSE
T ss_pred hhccccceeeeeccccccccccccccccchHHhhhHHHHHHhhhccccccceecccc--ccccccchhhhhhhcccccch
Confidence 33445566777667999999997432 23355577788889999887765543322 233333333333333322 34
Q ss_pred EEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 83 ILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 83 Iv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|++.+...+..++..+++.|+..++.+=|.
T Consensus 181 i~~~~~~~a~~~~~~l~~~g~~vp~di~Ii 210 (271)
T d1jyea_ 181 MLVANDQMALGAMRAITESGLRVGADISVV 210 (271)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred hhccchhhhhHHHHhHHHhhccCCceEEEE
Confidence 666677778889999999997554433333
No 35
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.77 E-value=20 Score=33.17 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEeCcc--ccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeE-E
Q 043276 6 SSQVGAITAIIKAFGWREAVPIYVDNQY--GEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV-F 82 (829)
Q Consensus 6 ~~q~~ai~~ll~~fgW~~V~iI~~dd~y--G~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arV-i 82 (829)
..-+..++..+...|-+++++|...... .......+.+.+++.+........+..............++.+....+ .
T Consensus 104 ~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 183 (282)
T d1dbqa_ 104 FEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA 183 (282)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSE
T ss_pred cchhhhhhhhhccccccccccccCCcchhhhhhhhhhHHHHHhhcCCCccceEEEecccchhhHHHHHHHHHhCCCCCce
Confidence 3445566677888999999999755333 345566666777777765544333333333333344455554443333 4
Q ss_pred EEEcChhHHHHHHHHHHHcCccccCeEEEEc
Q 043276 83 ILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 113 (829)
Q Consensus 83 Iv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t 113 (829)
|++.+...+..++..+.++|+..++-+-|.+
T Consensus 184 i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g 214 (282)
T d1dbqa_ 184 VFCGGDIMAMGALCAADEMGLRVPQDVSLIG 214 (282)
T ss_dssp EEESCHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEecchhhhhHHHHHHhccCCCCceEEEEe
Confidence 5556777888899999999986555555543
No 36
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=52.97 E-value=14 Score=25.58 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCccCccchhHHHHHHHhhh
Q 043276 442 TSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVF 486 (829)
Q Consensus 442 ~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 486 (829)
.+++.+++.+.++++.|+..+++ .-.++..++|+++.++..
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~~~----~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAPGA----QLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTC----CCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc----cccccchhhhhheeeeec
Confidence 33344445688889999865332 234688899999888763
No 37
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=52.24 E-value=21 Score=30.21 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEEEEEEeCcccc---chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhc-CCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYGE---ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG~---~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~arViIv~~~~ 88 (829)
+++||..+|.-|+ ..-+.|.+.|++.|.++.....++++ .+.+...+.++.. ..+++||..+..
T Consensus 4 r~~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~--~~~i~~~l~~~~~~~~~DlIvTtGGt 71 (155)
T d1y5ea1 4 RCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGT 71 (155)
T ss_dssp EEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred EEEEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeecch--HHHHHHHHHHHHhccCCCEEEEeeee
Confidence 4677775444453 44678888999999999988887765 5678888887764 578999988765
No 38
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=51.77 E-value=26 Score=30.14 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=47.3
Q ss_pred HcCCcEEEEEEEeCcccc---chHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHh-hcCCCeEEEEEcCh
Q 043276 18 AFGWREAVPIYVDNQYGE---ELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-FTMQTRVFILHMLP 88 (829)
Q Consensus 18 ~fgW~~V~iI~~dd~yG~---~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~l-k~~~arViIv~~~~ 88 (829)
.|-=-+|+||...|.-|. ..-+.|.+.+++.|.++.....++++ .+.+...+... ...+.++||..+..
T Consensus 5 ~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd--~~~~~~~l~~~~~~~~~dlIiTtGGt 77 (170)
T d1mkza_ 5 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGT 77 (170)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCC--HHHHHHHHHhhhhcccceEEEEeeee
Confidence 344457888887664443 34578889999999998887777754 45666666543 35677888886654
No 39
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.44 E-value=23 Score=32.41 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEeCc---cccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 4 NDSSQVGAITAIIKAFGWREAVPIYVDNQ---YGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 4 sD~~q~~ai~~ll~~fgW~~V~iI~~dd~---yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
++..-++-+++.+...|-+++++|..... .+....+.+.+++++.|+.... .+. +.+.++-.+.+.++.+.+..
T Consensus 98 D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~l~~~~~ 174 (255)
T d1byka_ 98 DDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--ALP-GLAMKQGYENVAKVITPETT 174 (255)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--ECC-CSCHHHHHHHSGGGCCTTCC
T ss_pred CcHHHHHHHHHHHHHhccccccccCCCcccccHHHHHhhHHHHHHHHcCCCccc--ccC-CCCHHHHHHHHHHHhCCccc
Confidence 44455667778888889999999964322 2234577888999999976432 222 22233333444555444555
Q ss_pred EEEEEcChhHHHHHHHHHHHcCc
Q 043276 81 VFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 81 ViIv~~~~~~~~~i~~~a~~~gm 103 (829)
. |++++...|..+++.+++.|+
T Consensus 175 a-ii~~~d~~A~g~~~~l~~~g~ 196 (255)
T d1byka_ 175 A-LLCATDTLALGASKYLQEQRI 196 (255)
T ss_dssp E-EEESSHHHHHHHHHHHHHTTC
T ss_pred e-eeccchhhHhhHHHHHHHhCc
Confidence 5 556777888889999999885
No 40
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.08 E-value=19 Score=33.32 Aligned_cols=86 Identities=6% Similarity=-0.077 Sum_probs=54.9
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHH
Q 043276 22 REAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 99 (829)
Q Consensus 22 ~~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~ 99 (829)
|.||+|..+ ++|....++.+.+++++.|..+... +...+.+.....+..+.+.+.+.+|+.............+.
T Consensus 1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~---~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 77 (282)
T d1dbqa_ 1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG---NAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 77 (282)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEE---ECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHhcCCCEEeeecccccchhhhhHHh
Confidence 468888744 7788888999999999999876433 22223344556778888889999888765433333333333
Q ss_pred HcCccccCeEEEEc
Q 043276 100 EIGLMNKGCVWIMT 113 (829)
Q Consensus 100 ~~gm~~~~~vwI~t 113 (829)
..++ ..|.+.+
T Consensus 78 ~~~i---PvV~~~~ 88 (282)
T d1dbqa_ 78 YRHI---PMVVMDW 88 (282)
T ss_dssp TTTS---CEEEEEC
T ss_pred hcCC---CceEEEe
Confidence 3343 3445443
No 41
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=49.23 E-value=25 Score=31.49 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceEEeC
Q 043276 535 VNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVE 614 (829)
Q Consensus 535 ~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~ 614 (829)
..|+ .+.+|+...-...+.||.+.+.+- .++...-..|.. -..|- .|++++-.....-+.++ +|.+++
T Consensus 104 ~~~l--~~~rIATkYpnit~~ff~~~gi~~-~ii~~~Ga~E~a--p~~g~----AD~IvDiv~TG~TLk~N---~L~~i~ 171 (210)
T d1nh8a1 104 TADL--AGMRIATAYPNLVRKDLATKGIEA-TVIRLDGAVEIS--VQLGV----ADAIADVVGSGRTLSQH---DLVAFG 171 (210)
T ss_dssp GGGG--TTCEEEESCHHHHHHHHHHHTCCC-EEEECSSCCTHH--HHTTS----CSEEEEEESSSHHHHHT---TEEEEE
T ss_pred hhhh--cCCEEeeehHHHHHHHHHHcCCce-eEEEEecCcccc--ccCCc----ceEEEeeeccHHHHHHC---CCEEcc
Confidence 4566 477899877778889998887753 444444333332 33455 67777665555554444 356666
Q ss_pred cccccCCceeeecCCC--C-chhhHHHHHHhh
Q 043276 615 PTFKTAGFGFAFPLHS--P-LVHDVSKAILNV 643 (829)
Q Consensus 615 ~~~~~~~~~~~~~k~s--p-l~~~in~~il~l 643 (829)
+.+......++-++.. + -.+.+++.+.++
T Consensus 172 ~~l~~S~a~ii~~~~~~~~~~~~~i~~l~~~l 203 (210)
T d1nh8a1 172 EPLCDSEAVLIERAGTDGQDQTEARDQLVARV 203 (210)
T ss_dssp EEEEEECEEEEEEC--------CHHHHHHHHH
T ss_pred hhhhheeheeEeccccCChhHHHHHHHHHHHH
Confidence 6554444444444332 1 233455555444
No 42
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=44.73 E-value=18 Score=33.27 Aligned_cols=78 Identities=8% Similarity=0.056 Sum_probs=57.0
Q ss_pred EEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHH
Q 043276 23 EAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKAN 99 (829)
Q Consensus 23 ~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~-~~~~~~i~~~a~ 99 (829)
-||+|..+ |.|.....+.+.+++++.|.++... ....+.....+.+..+...+.+++++... .......+..+.
T Consensus 3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~i~---~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~ 79 (271)
T d2dria_ 3 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL---DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 79 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE---ECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHHh
Confidence 47888755 6788899999999999999887543 22223444567778888888888888754 445567788888
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 80 ~~~i 83 (271)
T d2dria_ 80 QANI 83 (271)
T ss_dssp HTTC
T ss_pred hcce
Confidence 8774
No 43
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=42.51 E-value=26 Score=32.48 Aligned_cols=78 Identities=6% Similarity=-0.001 Sum_probs=54.2
Q ss_pred EEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHc
Q 043276 24 AVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEI 101 (829)
Q Consensus 24 V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~~~~~i~~~a~~~ 101 (829)
||++.. ++.|.......+.+++++.|..+.... ....+.+.....+.++.+.+.+-+|+.........+..++.+.
T Consensus 3 igv~~~~l~~~~~~~i~~~i~~~a~~~Gy~v~v~~--~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~ 80 (271)
T d1jyea_ 3 IGVATSSLALHAPSQIVAAILSRADQLGASVVVSM--VERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACT 80 (271)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE--CCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEE--CCCCCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhc
Confidence 677776 467778889999999999998875332 2222334566678888888899888876555555666666666
Q ss_pred Cc
Q 043276 102 GL 103 (829)
Q Consensus 102 gm 103 (829)
++
T Consensus 81 ~i 82 (271)
T d1jyea_ 81 NV 82 (271)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 44
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.44 E-value=38 Score=28.72 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=43.0
Q ss_pred EEEEEEEeCcc--c---cchHHHHHHHHHhC-----CceeeeEEecCCCCChhHHHHHHHHhhc-CCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY--G---EELIPSLTDALQAI-----DTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y--G---~~~~~~l~~~l~~~-----gi~I~~~~~i~~~~~~~~~~~~l~~lk~-~~arViIv~~~~ 88 (829)
+|+||...|.- | ...-+.+.+.|++. |..+.....+|++ .+.+.+.+.++.+ .+.++||..+..
T Consensus 5 rvaIitvsD~~~~G~~~D~~G~~l~~~l~~~~~~~~G~~v~~~~ivpDd--~~~I~~~l~~~~~~~~~D~IittGGt 79 (161)
T d1uuya_ 5 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGT 79 (161)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCCcCCCchHHHHHHHHhhccccCCcEEEEEEEECCC--HHHHHHHHHHhhhcCCceEEEEecCC
Confidence 57777755421 1 23345566666664 7888888888866 6688888888653 568999887653
No 45
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=41.32 E-value=23 Score=32.91 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=56.3
Q ss_pred EEEEEEEe--CccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh-hHHHHHHHHHH
Q 043276 23 EAVPIYVD--NQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKAN 99 (829)
Q Consensus 23 ~V~iI~~d--d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-~~~~~i~~~a~ 99 (829)
++++|..+ |+|.....+.+++++++.|..+..... +...+.....+.+.++.+.+.+.||+.... ......++++.
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~-~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~ 81 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAW 81 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHH
Confidence 57777644 679999999999999999987665322 222222334566777788899999888654 44456678888
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|.
T Consensus 82 ~~gi 85 (288)
T d1guda_ 82 KKGI 85 (288)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 8774
No 46
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.54 E-value=34 Score=28.78 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=45.5
Q ss_pred EEEEEEEeCcc---------c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQY---------G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~y---------G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|++|.+.|+- | ......|...+++.|..+.....++++ .+.+.+.+.+..+ ++++||..+..
T Consensus 2 rV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd--~~~i~~~l~~~~~-~~DliittGG~ 76 (155)
T d2ftsa3 2 VVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDN--PDDLLNALNEGIS-RADVIITSGGV 76 (155)
T ss_dssp CEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSS--HHHHHHHHHHHHH-HCSEEEEESCC
T ss_pred EEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCc--hhHHHHHHHHhhc-ccCEEEEeccc
Confidence 47777776654 2 234678889999999999888777755 5677777776543 57888887654
No 47
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=38.23 E-value=17 Score=31.11 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred EEEEEEEeCc--cc---cch----HHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQ--YG---EEL----IPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~--yG---~~~----~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+++||..+|+ .| ... .+.|.+.|++.|+.+.....++++ .+.+...+....+.++++||..+..
T Consensus 4 r~~iitigDe~~~G~~~D~~g~~~~~~L~~~l~~~G~~v~~~~iv~D~--~~~i~~~~~~a~~~~~DlVittGG~ 76 (163)
T d2g2ca1 4 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGT 76 (163)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEeCCccccCccccCchHHHHHHHHHHHHhCCeEEEEEEeecch--HHHHHHHHHhhhccCCCEEEecCCC
Confidence 4667765543 22 122 344444567779888888777754 5567777777666678999998753
No 48
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=36.29 E-value=43 Score=31.22 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=56.7
Q ss_pred EEEEEE--EeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHH
Q 043276 23 EAVPIY--VDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKAN 99 (829)
Q Consensus 23 ~V~iI~--~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~-~~~~~~i~~~a~ 99 (829)
+++++. .++.|.......+++++++.|..+.... . .+.+.-.+.+..+...+++.||+... ......+++++.
T Consensus 3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~i~~~---~-~d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~ 78 (305)
T d8abpa_ 3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---V-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 78 (305)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEE---C-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEc---C-CCHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHH
Confidence 466665 4577888889999999999998875432 1 22344556777787889999988864 455678899999
Q ss_pred HcCc
Q 043276 100 EIGL 103 (829)
Q Consensus 100 ~~gm 103 (829)
+.|+
T Consensus 79 ~~gi 82 (305)
T d8abpa_ 79 GYDM 82 (305)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 9885
No 49
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=34.60 E-value=92 Score=27.74 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=52.0
Q ss_pred CCCHHHHHhCCCcEEEEeCchHHHHHHhcCCCccceeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhcCCCceE
Q 043276 532 ITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYT 611 (829)
Q Consensus 532 I~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~ 611 (829)
++++.++ ++.+|+...-...+.||.+.+.+ ..++...-..|. +-..|- .|++++-.....-+.++ +|.
T Consensus 112 ~~~~~~~--~~~RIATkYp~it~~y~~~~gi~-~~ii~~~Ga~E~--ap~~g~----AD~IvDiv~TG~TLk~N---gLk 179 (220)
T d1h3da1 112 WDGPLSL--NGKRIATSYPHLLKRYLDQKGIS-FKSCLLNGSVEV--APRAGL----ADAICDLVSTGATLEAN---GLR 179 (220)
T ss_dssp CCCGGGG--TTCEEEESCHHHHHHHHHHHTCC-CEEEECSSCTTH--HHHTTS----CSEEEEEESSCHHHHHT---TEE
T ss_pred ccChhHc--CCCEEhhhhhHHHHHHHHhcccc-ceeeeccccccc--eecCCC----eeEEEEeccchHHHHHC---cCE
Confidence 4667777 47789987777888999888875 444444433332 234565 77777766555554444 356
Q ss_pred EeCcccccCCceeeecCCC
Q 043276 612 MVEPTFKTAGFGFAFPLHS 630 (829)
Q Consensus 612 ~v~~~~~~~~~~~~~~k~s 630 (829)
++...+. ....+...+.+
T Consensus 180 ~id~Il~-SsA~LI~n~~s 197 (220)
T d1h3da1 180 EVEVIYR-SKACLIQRDGE 197 (220)
T ss_dssp EEEEEEE-ECEEEEEESSC
T ss_pred EeeEEEE-EEEEEEEeccc
Confidence 6654443 34445455654
No 50
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=34.22 E-value=26 Score=32.76 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=56.6
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHH
Q 043276 22 REAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKA 98 (829)
Q Consensus 22 ~~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~-~~~~~~i~~~a 98 (829)
++|++|.. +++|.....+.+++++++.|+.+.+. -+...+...-.+.++.+...+.+.||+... .......+.++
T Consensus 4 ~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~--~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~a 81 (316)
T d1tjya_ 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE--ECCCCCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhhhh
Confidence 47788863 57788899999999999999876542 122223334456677777788998888764 44566778888
Q ss_pred HHcCc
Q 043276 99 NEIGL 103 (829)
Q Consensus 99 ~~~gm 103 (829)
.+.|.
T Consensus 82 ~~~gi 86 (316)
T d1tjya_ 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred hcccc
Confidence 88773
No 51
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=31.82 E-value=43 Score=30.42 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=35.9
Q ss_pred hhHHHHhHhcCcccEEEeccccccccceeccccccccccceEEEEEccCC
Q 043276 374 YNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDS 423 (829)
Q Consensus 374 ~~~li~~l~~g~~Di~~~~~~it~~R~~~vdft~p~~~~~~~~vv~~~~~ 423 (829)
-...+.+|.+|++|+++..-.++.+-...---..|+...+++++++..+.
T Consensus 38 S~~~~~~l~~g~~di~~~s~~~~~~e~~~~~~~~~ia~d~lviiv~~~np 87 (249)
T d1twya_ 38 STAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANP 87 (249)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEEEEEEEEEEEEEECTTCC
T ss_pred cHHHHHHHHcCCCeeeecccchhhhhhhcceeeEEEEeeccccccccccc
Confidence 47789999999999998776666532222223457888899999986554
No 52
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=31.78 E-value=1.2e+02 Score=24.50 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=44.4
Q ss_pred cEEEEEEEeCccc--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh------hHHHH
Q 043276 22 REAVPIYVDNQYG--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGSR 93 (829)
Q Consensus 22 ~~V~iI~~dd~yG--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~------~~~~~ 93 (829)
++|.||| .+.+| +..++.+.+.+.+.|+.+.... +.. .+.......+. ..+.+|+.+.. .....
T Consensus 3 ~Ki~IiY-~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~-~~~----~~~~~~~~~l~--~~d~vi~Gspt~~~~~~~~~~~ 74 (152)
T d1e5da1 3 NKVVIFY-DSMWHSTEKMARVLAESFRDEGCTVKLMW-CKA----CHHSQIMSEIS--DAGAVIVGSPTHNNGILPYVAG 74 (152)
T ss_dssp SEEEEEE-CCSSSHHHHHHHHHHHHHHHTTCEEEEEE-TTT----SCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHH
T ss_pred CeEEEEE-ECCCcHHHHHHHHHHHHHhhCCCEEEEee-ccc----CChhhhccchh--hCCEEEEeccccCCccCchhHH
Confidence 5789999 55677 6778888999999998765432 211 12333344443 34555554432 45566
Q ss_pred HHHHHHHcCc
Q 043276 94 IFEKANEIGL 103 (829)
Q Consensus 94 i~~~a~~~gm 103 (829)
++........
T Consensus 75 ~l~~~~~~~~ 84 (152)
T d1e5da1 75 TLQYIKGLRP 84 (152)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHhhccCC
Confidence 6666665543
No 53
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=31.56 E-value=58 Score=27.00 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.2
Q ss_pred EEEEEEEeCcc---------c---cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 23 EAVPIYVDNQY---------G---EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 23 ~V~iI~~dd~y---------G---~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
+|++|.+.|+- | ......|...+++.|..+.....++++ .+.+.+.+.+..+ ++++||+.+...
T Consensus 2 rv~iistG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~G~~v~~~~~v~Dd--~~~i~~~i~~~~~-~~DliIttGG~s 77 (148)
T d1uz5a3 2 KVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDD--KESLKALIEKAVN-VGDVVVISGGAS 77 (148)
T ss_dssp EEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSS--HHHHHHHHHHHHH-HCSEEEEECCC-
T ss_pred EEEEEeCChhhcCCCCcCCCCCEeeCChHHHHHhhhcccccceeeeeeccH--HHHHHHHHHhhhc-cccEEEECCCcc
Confidence 57777766542 3 344667888899999999888877755 5677777776653 468888887654
No 54
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=30.07 E-value=61 Score=26.91 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEE
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIL 84 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv 84 (829)
-..++.+++++-+++ +||+.+.. ...+.+.+.|++.|+.+.. +..+.+..+-...+.+.++...+++|.
T Consensus 16 K~~~L~~ll~~~~~k--~IIF~~s~---~~~~~l~~~L~~~g~~~~~---~~~~~~~~~r~~~~~~f~~~~~~ilv~ 84 (155)
T d1hv8a2 16 RFEALCRLLKNKEFY--GLVFCKTK---RDTKELASMLRDIGFKAGA---IHGDLSQSQREKVIRLFKQKKIRILIA 84 (155)
T ss_dssp HHHHHHHHHCSTTCC--EEEECSSH---HHHHHHHHHHHHTTCCEEE---ECSSSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHccCCCC--EEEEECch---HHHHHHHhhhccccccccc---ccccchhhhhhhhhhhhhcccceeeee
Confidence 456788888877776 56776644 4567788888888876543 333334445556777777666665543
No 55
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=29.31 E-value=26 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.006 Sum_probs=39.4
Q ss_pred CCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCC---ChhHHHHHHHHhhcCCCeE
Q 043276 20 GWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLA---TDDQIEKELYKLFTMQTRV 81 (829)
Q Consensus 20 gW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~---~~~~~~~~l~~lk~~~arV 81 (829)
||+-+-+-...+--..+....+...|.+.||.+-....+..+- ..++..+.+..|++.+-+|
T Consensus 1 GWr~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~ilVp~~~~~~A~~~L~~~g~~v 65 (66)
T d1zhva2 1 GWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHSL 65 (66)
T ss_dssp EEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccEEEEEHHHHHHHHHHHHHccCEe
Confidence 5766654322222335788999999999999887766654321 2346667777776666554
No 56
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=29.30 E-value=83 Score=29.67 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEEEEEEe---CccccchHHHHHHHHHhCCceeeeEEecCCCC-ChhHHHHHHHHhhcCCCeEEEEEcChhHHHH-HHHH
Q 043276 23 EAVPIYVD---NQYGEELIPSLTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSR-IFEK 97 (829)
Q Consensus 23 ~V~iI~~d---d~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~-~~~~~~~~l~~lk~~~arViIv~~~~~~~~~-i~~~ 97 (829)
.+++|+.+ ++|.......+.+++++.|........+.... +...-.+.+..+.+.+.+.||+......... +.+.
T Consensus 42 ~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i~~~ 121 (338)
T d1jx6a_ 42 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHV 121 (338)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCcccchHHHHHH
Confidence 58888754 45777888999999999997655544443322 2223345566777788888887654333444 4444
Q ss_pred HHHcC
Q 043276 98 ANEIG 102 (829)
Q Consensus 98 a~~~g 102 (829)
+.+.+
T Consensus 122 ~~~~~ 126 (338)
T d1jx6a_ 122 LDSTN 126 (338)
T ss_dssp HHHCS
T ss_pred HHhCC
Confidence 44443
No 57
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=28.92 E-value=1.1e+02 Score=25.07 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=49.0
Q ss_pred EEEEEEEeCccc------------cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh--
Q 043276 23 EAVPIYVDNQYG------------EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 88 (829)
Q Consensus 23 ~V~iI~~dd~yG------------~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~-- 88 (829)
+|+||.+.|+-- ......|...+++.|+.+.....++++ .+.+.+.+.+.. ..++++|..+..
T Consensus 2 rV~iistGdEl~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd--~~~i~~~l~~~~-~~~DivittGG~s~ 78 (149)
T d2nqra3 2 RVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDD--PHALRAAFIEAD-SQADVVISSGGVSV 78 (149)
T ss_dssp EEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHTTCEEEEEEEECSS--HHHHHHHHHHHH-HHCSEEEECSSSCS
T ss_pred EEEEEeCchhcCcCCCCCCCCcEeecchHHHHhhhhhcceEEEEccccCCh--HHHHHHHHHhcc-cccCEEEEcCCccC
Confidence 577777665542 334678888899999998888777654 557777777654 347899997753
Q ss_pred ---hHHHHHHHH
Q 043276 89 ---SLGSRIFEK 97 (829)
Q Consensus 89 ---~~~~~i~~~ 97 (829)
+....++.+
T Consensus 79 g~~D~~~~~l~~ 90 (149)
T d2nqra3 79 GEADYTKTILEE 90 (149)
T ss_dssp SSCSHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 455555544
No 58
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=28.80 E-value=1.1e+02 Score=27.09 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=44.6
Q ss_pred HHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhH-HHHHHHHhhcCCCeEEEEEcCh
Q 043276 12 ITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQ-IEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 12 i~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~-~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|..++..|. +|++|.. |.|-.+..+.|+...+..|+.+.. .....+... +.+.+.+.+..+.++|++....
T Consensus 29 LA~~~~~~g~-kV~lit~-Dt~R~gA~eQL~~~a~~l~v~~~~---~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaG 101 (211)
T d2qy9a2 29 LARQFEQQGK-SVMLAAG-DTFRAAAVEQLQVWGQRNNIPVIA---QHTGADSASVIFDAIQAAKARNIDVLIADTAG 101 (211)
T ss_dssp HHHHHHTTTC-CEEEECC-CTTCHHHHHHHHHHHHHTTCCEEC---CSTTCCHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHCCC-cEEEEec-ccccccchhhhhhhhhhcCCcccc---cccCCCHHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 3444566674 7888874 566778899999999999987531 111111111 2233334445677888888754
No 59
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.79 E-value=92 Score=25.98 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEE
Q 043276 3 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVF 82 (829)
Q Consensus 3 psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arVi 82 (829)
.++..-.+++.+|++.....++. |+.+.- ...+.+.+.|+..|+++... ..+.+..+-...++..+....+++
T Consensus 9 ~~~e~K~~~L~~ll~~~~~~k~i-IF~~s~---~~~~~l~~~L~~~~~~~~~~---~~~~~~~~r~~~l~~f~~~~~~iL 81 (162)
T d1fuka_ 9 EEEEYKYECLTDLYDSISVTQAV-IFCNTR---RKVEELTTKLRNDKFTVSAI---YSDLPQQERDTIMKEFRSGSSRIL 81 (162)
T ss_dssp ESGGGHHHHHHHHHHHTTCSCEE-EEESSH---HHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCcHHHHHHHHHHHHhCCCCcEE-EEEEEE---chHHHHHHHHhhcCceEEEe---ccCCchhhHHHHHHHHhhccccee
Confidence 35566678889999988888744 454543 56778888899999876533 333344555667777877777765
Q ss_pred EEEcChhHHHHHHHHHHHcCccccCeEEEE
Q 043276 83 ILHMLPSLGSRIFEKANEIGLMNKGCVWIM 112 (829)
Q Consensus 83 Iv~~~~~~~~~i~~~a~~~gm~~~~~vwI~ 112 (829)
|.. + +...|+..++-.++.
T Consensus 82 v~T-d----------v~~rGiDi~~v~~VI 100 (162)
T d1fuka_ 82 IST-D----------LLARGIDVQQVSLVI 100 (162)
T ss_dssp EEE-G----------GGTTTCCCCSCSEEE
T ss_pred ecc-c----------cccccccCCCceEEE
Confidence 443 2 234566555544444
No 60
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=28.78 E-value=1.3e+02 Score=27.00 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeee
Q 043276 8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPY 54 (829)
Q Consensus 8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~ 54 (829)
.+.++++-+-.-|++.|+++.- ++-.....+.+.+++++.|.++.+
T Consensus 21 IG~a~a~~la~~Ga~~vvl~~R-~~~~~~~~~~~~~~l~~~g~~v~~ 66 (259)
T d2fr1a1 21 VGGQIARWLARRGAPHLLLVSR-SGPDADGAGELVAELEALGARTTV 66 (259)
T ss_dssp HHHHHHHHHHHHTCSEEEEEES-SGGGSTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeC-CccCHHHHHHHHHHHHhccccccc
Confidence 3455555554455655544432 111223344444455555554443
No 61
>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
Probab=28.26 E-value=66 Score=28.03 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=41.2
Q ss_pred EEEEEEEeCc-----cccchHHHHHHHHHhCCcee--eeEEecCCCCChhHHHHHHHHhh-cCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQ-----YGEELIPSLTDALQAIDTRV--PYRSVISPLATDDQIEKELYKLF-TMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~-----yG~~~~~~l~~~l~~~gi~I--~~~~~i~~~~~~~~~~~~l~~lk-~~~arViIv~~~~ 88 (829)
+|+||...|. +-...-+.+.+.|++.|..+ .....+|++ .+.+.+.+.++- +.+.++||..+..
T Consensus 4 rvaVITvSD~~~~G~~~D~sGp~l~~~L~~~g~~~~~v~~~IVpDd--~~~I~~~l~~~~~~~~~DlIlTTGGT 75 (190)
T d1di6a_ 4 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE--QAIIEQTLCELVDEMSCHLVLTTGGT 75 (190)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCCCcCCCCCCCcHHHHHHHHHHcCCCceEEEEEEECCc--HHHHHHHHHHHHhccCceEEEecCCc
Confidence 5777775442 22344567888888876542 223456655 567888888864 4678999998753
No 62
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.63 E-value=74 Score=26.81 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=44.3
Q ss_pred EEEEEEEeCc--cc---cchHHHHHHHHHh---CCceeeeEEecCCCCChhHHHHHHHHh-hcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQ--YG---EELIPSLTDALQA---IDTRVPYRSVISPLATDDQIEKELYKL-FTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~--yG---~~~~~~l~~~l~~---~gi~I~~~~~i~~~~~~~~~~~~l~~l-k~~~arViIv~~~~ 88 (829)
+++||...|+ .| ....+.|.+.|++ .|..+.....++++ .+.+...+.+. .+.++++||..+..
T Consensus 4 rv~iit~gDe~~~G~~~D~ng~~L~~~l~~~~~~G~~v~~~~iV~Dd--~~~i~~al~~~~~~~~~D~ViTtGG~ 76 (169)
T d1jlja_ 4 RVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGT 76 (169)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCCcccCCcCCccHHHHHHHHHhhccCCcEEEEEEEeccc--hhhHHHHHHHHhhcccccEEEEecCc
Confidence 5788876655 33 2346677777877 58888888888765 55677777664 34678898887653
No 63
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=27.18 E-value=97 Score=25.85 Aligned_cols=61 Identities=15% Similarity=0.030 Sum_probs=36.7
Q ss_pred EEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEc
Q 043276 24 AVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 86 (829)
Q Consensus 24 V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~ 86 (829)
|+||. ..+.....++...+.|++.|+....+. .+...+.+.+.+.+++.++.+.+|||...
T Consensus 4 V~Iim-GS~SD~~~~~~a~~~L~~~gi~~~~~v-~SAHrtp~rl~~~~~~~~~~~~~viIa~A 64 (155)
T d1xmpa_ 4 VGVIM-GSTSDWETMKYACDILDELNIPYEKKV-VSAHRTPDYMFEYAETARERGLKVIIAGA 64 (155)
T ss_dssp EEEEE-SSGGGHHHHHHHHHHHHHTTCCEEEEE-CCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred EEEEE-CcHhhHHHHHHHHHHHHHcCCcEEEEE-echhcChHHHHHHHHHHHhhcceEEEeec
Confidence 45554 333334567777788888888765543 33334455566666666666666776654
No 64
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=26.83 E-value=1.2e+02 Score=25.75 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=41.8
Q ss_pred EEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|+||. ........++...+.|++.|+...... .....+.+.+.+.+.++++.+.+|||..+..
T Consensus 2 kV~Ii~-Gs~SD~~~~~~a~~~L~~~gi~~~~~v-~saHr~p~rl~~~~~~~~~~~~~viIa~AG~ 65 (169)
T d1o4va_ 2 RVGIIM-GSDSDLPVMKQAAEILEEFGIDYEITI-VSAHRTPDRMFEYAKNAEERGIEVIIAGAGG 65 (169)
T ss_dssp EEEEEE-SCGGGHHHHHHHHHHHHHTTCEEEEEE-CCTTTCHHHHHHHHHHTTTTTCCEEEEEEES
T ss_pred eEEEEE-CcHhhHHHHHHHHHHHHHcCCcEEEEE-eeeecCHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 467775 333334567777888899998765543 2333445567777777777778888877543
No 65
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=25.92 E-value=75 Score=26.85 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=38.4
Q ss_pred EEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276 23 EAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 87 (829)
Q Consensus 23 ~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~ 87 (829)
+|+||. .+......++...+.|++.|+....+ .++...+.+.+.+.+++..+.+..|||....
T Consensus 3 KV~IIm-GS~SD~~~~~~a~~~L~~~gI~~e~~-v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG 65 (163)
T d1qcza_ 3 RVAIVM-GSKSDWATMQFAAEIFEILNVPHHVE-VVSAHRTPDKLFSFAESAEENGYQVIIAGAG 65 (163)
T ss_dssp CEEEEE-SSGGGHHHHHHHHHHHHHHTCCEEEE-ECCTTTCHHHHHHHHHHTTTTTCSEEEEEEC
T ss_pred eEEEEE-CcHhhHHHHHHHHHHHHHcCCCeEEE-EeccccCHHHHHHHHHHHHHcCCeEEEEecc
Confidence 466665 33333456777777888888776554 2333334455666666666666677776654
No 66
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=24.96 E-value=1.6e+02 Score=23.60 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=43.7
Q ss_pred cEEEEEEEeCccc--cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh------hHHHH
Q 043276 22 REAVPIYVDNQYG--EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGSR 93 (829)
Q Consensus 22 ~~V~iI~~dd~yG--~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~------~~~~~ 93 (829)
.++.||| .+.|| +..++.+.+.+++.|+.+..... .. . +.......+.+ .+.||+.+.. .....
T Consensus 3 ~K~lIvY-~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~-~~-~---~~~~~~~~~~~--~d~ii~Gspt~~g~~~~~~~~ 74 (149)
T d1ycga1 3 AKAVIAY-DTMWLSTEKMAHALMDGLVAGGCEVKLFKL-SV-S---DRNDVIKEILD--ARAVLVGSPTINNDILPVVSP 74 (149)
T ss_dssp SEEEEEE-CCSSSHHHHHHHHHHHHHHHTTCEEEEEEG-GG-S---CHHHHHHHHHH--CSEEEEECCCBTTBCCGGGHH
T ss_pred cEEEEEE-ECCCcHHHHHHHHHHHHHHhcCCeeEEEEc-cc-c---chHHHhhhhhh--CCeEEEEeecccCCCCHHHHH
Confidence 5788998 55677 57888899999999987654322 11 1 22233333432 4566655442 35566
Q ss_pred HHHHHHHcC
Q 043276 94 IFEKANEIG 102 (829)
Q Consensus 94 i~~~a~~~g 102 (829)
++.......
T Consensus 75 ~l~~l~~~~ 83 (149)
T d1ycga1 75 LLDDLVGLR 83 (149)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhccc
Confidence 666665544
No 67
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=23.12 E-value=1.1e+02 Score=28.58 Aligned_cols=97 Identities=9% Similarity=0.017 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHcCC--cEEEEEEEeCccc-cchHHHHHHHHHhCC-ceeeeEEecCCCCChhHHHHHHHHhhcCCCe
Q 043276 5 DSSQVGAITAIIKAFGW--REAVPIYVDNQYG-EELIPSLTDALQAID-TRVPYRSVISPLATDDQIEKELYKLFTMQTR 80 (829)
Q Consensus 5 D~~q~~ai~~ll~~fgW--~~V~iI~~dd~yG-~~~~~~l~~~l~~~g-i~I~~~~~i~~~~~~~~~~~~l~~lk~~~ar 80 (829)
+..-+..+++.|...|. .+++++.....+. ..-...+.+++++.| +.+.. ......+.+.-...+..+.+...+
T Consensus 154 ~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 231 (338)
T d1jx6a_ 154 HAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQS--AYYTKATKQSGYDAAKASLAKHPD 231 (338)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEE--EECCCSSHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEecccccccHHHHHHHHHHHHhhcccccce--eecccchHHHHHHHHHHHhhhccc
Confidence 34445667777766664 5677776443332 233566777777765 33332 222223333333344443322222
Q ss_pred -EEEEEcChhHHHHHHHHHHHcCc
Q 043276 81 -VFILHMLPSLGSRIFEKANEIGL 103 (829)
Q Consensus 81 -ViIv~~~~~~~~~i~~~a~~~gm 103 (829)
-.|++++...+..++..+++.|.
T Consensus 232 ~~ai~~~nd~~A~g~~~al~~~G~ 255 (338)
T d1jx6a_ 232 VDFIYACSTDVALGAVDALAELGR 255 (338)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHTC
T ss_pred ccccccccchhHhhhhhhhhhhhc
Confidence 24555666677788888889884
No 68
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=23.08 E-value=90 Score=28.48 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=53.9
Q ss_pred EEEEEEE--eCccccchHHHHHHHHHhC-CceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEc-ChhHHHHHHHHH
Q 043276 23 EAVPIYV--DNQYGEELIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM-LPSLGSRIFEKA 98 (829)
Q Consensus 23 ~V~iI~~--dd~yG~~~~~~l~~~l~~~-gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~-~~~~~~~i~~~a 98 (829)
++|++.. ++.|.....+.+.+++++. |+.+.... ...+...-.+.++.+.+.+++.+|+.. ........+.++
T Consensus 3 kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~---~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~~ 79 (305)
T d2fvya1 3 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND---SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 79 (305)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc---CCCCHHHHHHHHHHHHHcCCCEEEeecccccccHHHHHHH
Confidence 6777663 5777788888898888876 67765542 122334455677777778999998875 456666778888
Q ss_pred HHcC
Q 043276 99 NEIG 102 (829)
Q Consensus 99 ~~~g 102 (829)
.+.|
T Consensus 80 ~~~~ 83 (305)
T d2fvya1 80 RGQN 83 (305)
T ss_dssp HTTT
T ss_pred HhcC
Confidence 8776
No 69
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.62 E-value=1.2e+02 Score=25.40 Aligned_cols=74 Identities=11% Similarity=0.182 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEE
Q 043276 3 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVF 82 (829)
Q Consensus 3 psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arVi 82 (829)
+++..-..++.++++...=.+ ++|+.++. ..++.+.+.+++.|..+.. +..+.+.++-...+.+.++...+++
T Consensus 16 ~~~~~K~~~L~~ll~~~~~~k-~iiF~~~~---~~~~~~~~~l~~~~~~~~~---~~~~~~~~~r~~~~~~fk~g~~~iL 88 (168)
T d2j0sa2 16 EREEWKFDTLCDLYDTLTITQ-AVIFCNTK---RKVDWLTEKMREANFTVSS---MHGDMPQKERESIMKEFRSGASRVL 88 (168)
T ss_dssp SSTTHHHHHHHHHHHHHTSSE-EEEECSSH---HHHHHHHHHHHHTTCCCEE---ECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred cChHHHHHHHHHHHHhCCCCc-eEEEeeeH---HHHHHHHHHhhhcccchhh---hhhhhhHHHHHHHHHHHhcCCccEE
Confidence 344445566777776655554 44454443 3456666777777765432 2223334444555666665555543
Q ss_pred E
Q 043276 83 I 83 (829)
Q Consensus 83 I 83 (829)
|
T Consensus 89 v 89 (168)
T d2j0sa2 89 I 89 (168)
T ss_dssp E
T ss_pred e
Confidence 3
No 70
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.40 E-value=73 Score=28.73 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecC----CCCChhHHHHHHHHhhcCCCeEEEEEc
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVIS----PLATDDQIEKELYKLFTMQTRVFILHM 86 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~----~~~~~~~~~~~l~~lk~~~arViIv~~ 86 (829)
++.++++..|..-|=+-. +-.......+.+.+.+++.|+.+....... .....+++.+.+...+..+++.+++++
T Consensus 23 ~~l~~~a~~G~dgIEi~~-~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~ 101 (250)
T d1yx1a1 23 SFLPLLAMAGAQRVELRE-ELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSL 101 (250)
T ss_dssp GGHHHHHHHTCSEEEEEG-GGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhCCCEEEEec-ccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhhHHHHHHHHHHHHHhCCCEEEEee
Confidence 456788889999887632 211223447889999999999876543221 122233566666666667777776654
No 71
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]}
Probab=21.99 E-value=84 Score=26.63 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=41.6
Q ss_pred EEEEEEEeCc--cc---cchHHHHHHHHHhCCcee--eeEEecCCCCChhHHHHHHHHhh-cCCCeEEEEEcC
Q 043276 23 EAVPIYVDNQ--YG---EELIPSLTDALQAIDTRV--PYRSVISPLATDDQIEKELYKLF-TMQTRVFILHML 87 (829)
Q Consensus 23 ~V~iI~~dd~--yG---~~~~~~l~~~l~~~gi~I--~~~~~i~~~~~~~~~~~~l~~lk-~~~arViIv~~~ 87 (829)
+|+||..+|+ .| ...-+.+.+.|.+.|..+ .....+|++ .+.+.+.+..+. +.+.++|+..+.
T Consensus 4 rv~IitvsD~~~~G~~~D~~gp~l~~~L~~~G~~~~~v~~~ivpDd--~~~I~~~l~~~~~~~~~dlIittGG 74 (173)
T d2f7wa1 4 KIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDE--QDVIETTLIKMADEQDCCLIVTTGG 74 (173)
T ss_dssp EEEEEEECHHHHHCCSCCHHHHHHHHHHHHHBCSCEEEEEEEECSC--HHHHHHHHHHHHHTSCEEEEEEESC
T ss_pred EEEEEEeCCCCcCCCccCCCHHHHHHHHHHhCCCceEEEEEEcCCc--HHHHHHHhhhhhhcccccEEEEecc
Confidence 6788886653 23 445688888899988653 334456655 557777777664 456777777654
No 72
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.28 E-value=61 Score=29.25 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=46.8
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcChh
Q 043276 22 REAVPIYV--DNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 89 (829)
Q Consensus 22 ~~V~iI~~--dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~~ 89 (829)
+-||+|.. |+.+....++.+.+++++.|..+.... ...+.+...+.++.+.+.+++.+|++....
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~---s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME---SQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhccccceeeccccc
Confidence 46888885 466667789999999999998764322 223344556678888888999999876543
No 73
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.08 E-value=38 Score=30.88 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCcccEEEEecCCCCCCCCCChhHHHHhHhcCcccEEEec
Q 043276 342 IDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGD 392 (829)
Q Consensus 342 idll~~ia~~l~f~~~~~~~~~~~~~g~~ng~~~~li~~l~~g~~Di~~~~ 392 (829)
.+.++..+++.|. +.+++.+. ++..++.+|..|++|++..+
T Consensus 14 ~~~~~~~~~k~Gl--~Ve~~~f~--------~~~~~~~Al~~G~iD~~~~~ 54 (255)
T d1p99a_ 14 WEKVKELAKKDDI--DVEIKHFS--------DYNLPNKALNDGDIDMNAFQ 54 (255)
T ss_dssp HHHHHHHHGGGTC--CEEEEECS--------STTSHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHcCC--EEEEEEcC--------CchhHHHHHHcCCCCEEccC
Confidence 5667788888986 55667775 57899999999999997643
No 74
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=20.68 E-value=1.3e+02 Score=25.21 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=35.5
Q ss_pred EEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEc
Q 043276 23 EAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 86 (829)
Q Consensus 23 ~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~ 86 (829)
+|+||. ..+.....++...+.|++.|+...... .+...+.+.+.+.+.+..+.+.+|||...
T Consensus 4 ~V~Iim-GS~SD~~v~~~a~~~L~~~gI~~e~~v-~SAHR~p~~l~~~~~~~e~~~~~viIa~A 65 (159)
T d1u11a_ 4 VVGIIM-GSQSDWETMRHADALLTELEIPHETLI-VSAHRTPDRLADYARTAAERGLNVIIAGA 65 (159)
T ss_dssp SEEEEE-SSGGGHHHHHHHHHHHHHTTCCEEEEE-CCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred eEEEEe-CCHhhHHHHHHHHHHHHHhCCceEEEE-ehHhhChHHHHHHHHHHHhcCCeEEEEEe
Confidence 366665 223234566777778888887654442 23333444555566655555666666654
No 75
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.18 E-value=1.5e+02 Score=26.75 Aligned_cols=84 Identities=8% Similarity=0.129 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC---
Q 043276 11 AITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--- 87 (829)
Q Consensus 11 ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~--- 87 (829)
.++++.+ -|-.-++|++ |..|..|..+.|.+.-+..++.|-....+- +. -++..-+..+++.|++.+.
T Consensus 67 ~~a~~~~-~gA~aiSVLT-d~~~F~Gs~~dl~~v~~~~~~PiLrKDFIi---d~----~QI~ea~~~GADaiLLI~~~L~ 137 (247)
T d1a53a_ 67 EYSKFME-RYAVGLSILT-EEKYFNGSYETLRKIASSVSIPILMKDFIV---KE----SQIDDAYNLGADTVLLIVKILT 137 (247)
T ss_dssp HHHHHHT-TTCSEEEEEC-CCTTTCCCHHHHHHHHHHCCSCEEEESCCC---SH----HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHH-hCCCeEEEec-CccccccchHHHHHHHhccccceeeccccc---Ch----HHHHHHHHhhcchhhhhhhhcc
Confidence 3455554 4778888886 777777889999888788887765443321 12 2566666689999988764
Q ss_pred hhHHHHHHHHHHHcCc
Q 043276 88 PSLGSRIFEKANEIGL 103 (829)
Q Consensus 88 ~~~~~~i~~~a~~~gm 103 (829)
.+....+...|+++||
T Consensus 138 ~~~l~~l~~~a~~lgl 153 (247)
T d1a53a_ 138 ERELESLLEYARSYGM 153 (247)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4678899999999998
No 76
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=20.05 E-value=1.1e+02 Score=25.01 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=40.6
Q ss_pred EEEEEEEeCccc--------------cchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcCh
Q 043276 23 EAVPIYVDNQYG--------------EELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 88 (829)
Q Consensus 23 ~V~iI~~dd~yG--------------~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~~ 88 (829)
+|+++.+.|+-- ......|...+++.|+.+.....++++ .+.+.+.+.+.. ..++++|..+..
T Consensus 4 rV~iistG~Elv~~~~~~~~~~g~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~-~~~DlvIttGG~ 80 (144)
T d1wu2a3 4 KVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDD--ESIIKETLEKAK-NECDIVLITGGS 80 (144)
T ss_dssp EEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSC--HHHHTTHHHHHH-HCSEEEECC---
T ss_pred EEEEEcCChhhcCCCCcCCCCCCcEeecCchHHhhhhcccCcceeEEEEecch--HHHHHHHHHHhh-hcccEEEEcccc
Confidence 577777665541 223456778888899888887777754 556777777654 356888877654
Done!