Query 043280
Match_columns 298
No_of_seqs 117 out of 227
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nsz_A Programmed cell death p 77.5 2.7 9.2E-05 33.9 4.5 46 213-264 2-47 (129)
2 2ion_A PDCD4, programmed cell 75.9 3.2 0.00011 34.7 4.7 48 212-265 3-50 (152)
3 2rg8_A Programmed cell death p 72.4 5.2 0.00018 33.7 5.2 47 213-265 5-51 (165)
4 2zu6_B Programmed cell death p 42.3 29 0.00099 32.0 4.9 49 212-266 160-208 (307)
5 3eiq_C Programmed cell death p 39.5 43 0.0015 31.7 5.8 50 210-265 209-258 (358)
6 3eiq_C Programmed cell death p 38.0 37 0.0013 32.1 5.1 46 215-266 51-96 (358)
7 1ug3_A EIF4GI, eukaryotic prot 37.3 39 0.0013 30.9 4.9 45 213-263 6-50 (339)
8 2zu6_B Programmed cell death p 30.8 41 0.0014 31.0 4.0 44 216-265 1-44 (307)
9 2xwv_A Sialic acid-binding per 21.5 57 0.0019 29.1 3.0 40 214-257 272-311 (312)
10 2jyl_A Capsid protein P24 (Ca) 21.5 80 0.0028 25.2 3.6 49 210-263 31-79 (105)
No 1
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.49 E-value=2.7 Score=33.94 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 043280 213 PYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFV 264 (298)
Q Consensus 213 Py~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~ 264 (298)
|-++|++.|..+|.+-- .-.+++|-..|.=.||.+.+|..+|.-.+
T Consensus 2 p~eel~kki~~ll~EY~------~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i 47 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL------LSGDISEAEHCLKELEVPHFHHELVYEAI 47 (129)
T ss_dssp CCCHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 77899999999999874 22388999999999998888876665443
No 2
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.95 E-value=3.2 Score=34.69 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 043280 212 SPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVD 265 (298)
Q Consensus 212 DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~D 265 (298)
.|-.+|++.|..+|.+-- .-.+++|-..|.=.||.+.+|..+|.-.+.
T Consensus 3 ~~~eel~kki~~lL~EY~------~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~ 50 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL------LSGDISEAEHCLKELEVPHFHHELVYEAIV 50 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 578899999999999874 223889999999999988888777665443
No 3
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=72.39 E-value=5.2 Score=33.74 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 043280 213 PYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVD 265 (298)
Q Consensus 213 Py~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~D 265 (298)
+-++|++.+..+|.|.- .-.+++|.+.|.=.||.+.+|..+|+..+.
T Consensus 5 s~ee~~kk~~~ii~EYf------~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYF------EHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 51 (165)
T ss_dssp SHHHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 46799999999999874 223889999999999999999988877654
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.34 E-value=29 Score=31.99 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 043280 212 SPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVDL 266 (298)
Q Consensus 212 DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~Dl 266 (298)
-|-.+|++-|..+|.|--. -.+++|-..|.=.||.+.+|..+|+..+..
T Consensus 160 ~~~eelkkki~~lL~EY~~------~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~ 208 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLL------SGDISEAEHCLKELEVPHFHHELVYEAIIM 208 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4778999999999998741 238899999999999888888777655443
No 5
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.51 E-value=43 Score=31.67 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVD 265 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~D 265 (298)
...|-.++++-|..+|.+.- ...+++|-..|.=.||.+.+|..+|+-.+.
T Consensus 209 ~~~~veelkkki~~lL~EY~------~s~D~~EA~~ci~EL~~p~fhhe~V~~av~ 258 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYL------LSGDISEAEHCLKELEVPHFHHELVYEAIV 258 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhc------cCCCHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 44689999999999999875 344899999999999998887766654443
No 6
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.02 E-value=37 Score=32.09 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 043280 215 DDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVDL 266 (298)
Q Consensus 215 ~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~Dl 266 (298)
++|++-+..+|.+-- .-.+++|.+.|.=.||.+.+|..+|+-++..
T Consensus 51 ee~~k~~~~ii~EYf------~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYF------EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHHH------HHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------cCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 799999999999874 2237899999999999999998888766543
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.34 E-value=39 Score=30.86 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 043280 213 PYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAF 263 (298)
Q Consensus 213 Py~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF 263 (298)
+-++|++.|..+|.+--. -.+++|-+.|.-.||.+.+|..+|...
T Consensus 6 s~ee~~k~~~~ll~Ey~~------~~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLH------LNDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 356899999999988641 127789999999999997776665443
No 8
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.80 E-value=41 Score=30.96 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 043280 216 DFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVD 265 (298)
Q Consensus 216 DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~D 265 (298)
||++-+..+|.+--. -.+++|.+.|.=.||.+.+|..+|+-.+.
T Consensus 1 e~~k~~~~ii~EYf~------~~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFE------HGDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHHHH------HCCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHc------CCCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 588888899988642 23889999999999999999988886544
No 9
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=21.54 E-value=57 Score=29.08 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchh
Q 043280 214 YDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYK 257 (298)
Q Consensus 214 y~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~ 257 (298)
...||+.+..+.++..- .....-++||.-|+..|+.+||.
T Consensus 272 ~~~~~~a~~~v~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVK----QTGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp SHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHhCcccccC
Confidence 46677777776654310 01124578999999999998886
No 10
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=21.47 E-value=80 Score=25.19 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAF 263 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF 263 (298)
...||+||..-..+-+++......++.| |-+-|. |=..|+.. +.|+++.
T Consensus 31 pKEPf~dyVdR~~k~l~ae~~~~~vK~~--mt~tL~-~qNANpdC--k~ilk~l 79 (105)
T 2jyl_A 31 PKEPFRDYVDRFYKTLRAEQASQEVKNA--ATETLL-VQNANPDC--KTILKAL 79 (105)
T ss_dssp SSSCHHHHHHHHHHHHHHHCCCTTTTTS--CHHHHH-HHTSCHHH--HHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhcchhhHHH--hhhhhh-HhhcCcch--hhHHHcc
Confidence 3579999999999999887644456677 344442 45555443 5566654
Done!