Query 043280
Match_columns 298
No_of_seqs 117 out of 227
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 05:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043280.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043280hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 77.1 1.3 9.5E-05 34.0 4.5 48 213-266 2-49 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 53.8 7.8 0.00057 31.0 4.9 46 215-266 7-52 (193)
3 d2eiaa1 a.28.3.1 (A:148-222) E 37.0 9.5 0.00069 27.0 2.5 42 210-254 10-51 (75)
4 d1v29a_ d.149.1.1 (A:) Cobalt- 23.2 35 0.0026 28.5 4.1 53 212-265 10-63 (203)
5 d1d1da1 a.28.3.1 (A:151-230) R 19.2 45 0.0033 23.7 3.4 48 210-262 10-57 (80)
6 d1s7za_ a.159.3.1 (A:) B-form 19.2 57 0.0041 24.6 4.1 51 214-264 3-53 (106)
7 d1qrjb1 a.28.3.1 (B:131-214) H 17.8 48 0.0035 23.7 3.3 49 210-263 10-58 (84)
8 d1kxpd3 a.126.1.1 (D:405-473) 15.6 1E+02 0.0074 21.7 4.5 35 209-246 6-40 (69)
9 d1ugpa_ d.149.1.1 (A:) Cobalt- 14.9 54 0.004 27.3 3.4 43 220-266 22-65 (203)
10 d2qdya1 d.149.1.1 (A:10-206) I 12.1 88 0.0064 25.9 3.9 52 210-265 6-58 (197)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.06 E-value=1.3 Score=33.98 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 043280 213 PYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVDL 266 (298)
Q Consensus 213 Py~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~Dl 266 (298)
|-..+++.|..||.|--. -.+++|.+.|.-.||.+.+|..+|+..+.+
T Consensus 2 pv~~l~kk~~~ll~EY~~------~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ 49 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYLL------SGDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 455789999999998752 237899999999999998887766555443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.75 E-value=7.8 Score=30.97 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 043280 215 DDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFVDL 266 (298)
Q Consensus 215 ~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~Dl 266 (298)
+||++-+..+|.+--. -.++.|.+.|.=.||.+.+|..+|...+..
T Consensus 7 ee~~kk~~~il~Ey~~------~~D~~Ea~~~l~el~~p~~~~~~V~~~i~~ 52 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLH------LNDMKEAVQCVQELASPSLLFIFVRHGVES 52 (193)
T ss_dssp HHHHHHHHHHHHHHHH------HCCHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------CCCHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 6899999999988641 227799999999999988887776655443
No 3
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=36.96 E-value=9.5 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCC
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKK 254 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~ 254 (298)
..+||+||...+.+-++.......+..| ..+.| +|=..|+..
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~-~~~~L--~~qNANpdC 51 (75)
T d2eiaa1 10 AKEPYPEFVDRLLSQIKSEGHPQEISKF-LTDTL--TIQNANEEC 51 (75)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCHHHHHH-HHHHH--HHHTSCTTT
T ss_pred CCCCHHHHHHHHHHHHHhhcCcHhHHHH-HHHHH--hHhcCCHHH
Confidence 5789999999999999876422223344 33333 466666654
No 4
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=23.16 E-value=35 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHh-cCCCCchhHHHHHHHH
Q 043280 212 SPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLN-LNEKKSYKFILSAFVD 265 (298)
Q Consensus 212 DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLs-LN~~~~H~~Iv~AF~D 265 (298)
.|..|| +-|++-+++-...-|+.+.+++.+++..|-. +.+..-=++|-+|.+|
T Consensus 10 ~~~s~~-e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFW-EARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466775 2344433333333358999999999999997 5888778888888765
No 5
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=19.23 E-value=45 Score=23.73 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSA 262 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~A 262 (298)
..+||.||..-..+-++....+...+.| -++.|| .=|+..-=+.|++|
T Consensus 10 pkEpf~dfVdRl~~al~~~~~~~~~k~~-~~~~L~----~qNANpdCk~iLra 57 (80)
T d1d1da1 10 PSESFVDFANRLIKAVEGSDLPPSARAP-VIIDCF----RQKSQPDIQQLIRA 57 (80)
T ss_dssp SSSCHHHHHHHHHHHHHTSSCCTTTTTH-HHHHHH----TTSSCHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH----HHhcCHHHHHHHHh
Confidence 5789999999999999886544445555 445554 33666656666654
No 6
>d1s7za_ a.159.3.1 (A:) B-form DNA mimic Ocr {Bacteriophage T7 [TaxId: 10760]}
Probab=19.21 E-value=57 Score=24.64 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 043280 214 YDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAFV 264 (298)
Q Consensus 214 y~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF~ 264 (298)
|.+.-.+-.||..++-..+.+.+-+++++-|.--..-|-+.+..-|..+|+
T Consensus 3 y~~l~a~a~e~l~e~Ir~d~i~~~DD~~D~iHe~ad~~VP~yy~diFsVmA 53 (106)
T d1s7za_ 3 YNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMA 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGCHHHHHHHHHHHSCCSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHHHHHhccCCcchhhhHhhhhh
Confidence 677888889999988666668888888888877777777877776666654
No 7
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=17.77 E-value=48 Score=23.73 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNLNEKKSYKFILSAF 263 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsLN~~~~H~~Iv~AF 263 (298)
...||.||..-..+-|+.......+..| -++.| +-=|+..-=+.|+++.
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~-l~~~L----~~qNANpdCk~~lr~l 58 (84)
T d1qrjb1 10 LEEPYHAFVERLNIALDNGLPEGTPKDP-ILRSL----AYSNANKECQKLLQAR 58 (84)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCTTSCCHH-HHHHH----HTTTBCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCHHHHHH-HHHHH----HHHcccHHHHHHHHhc
Confidence 5689999999999999876433334444 33333 3446555555666544
No 8
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.57 E-value=1e+02 Score=21.68 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=29.4
Q ss_pred eCCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 043280 209 YSPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFC 246 (298)
Q Consensus 209 ~S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~C 246 (298)
+|..+|.+|++-..|-+..+. ......+|+||..-
T Consensus 6 Yse~tFte~kkkL~e~lr~k~---P~as~~~l~~mVek 40 (69)
T d1kxpd3 6 YSENTFTEYKKKLAERLKAKL---PDATPKELAKLVNK 40 (69)
T ss_dssp TTTSCHHHHHHHHHHHHHHHC---TTSCHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHhhC---CCCCHHHHHHHHHH
Confidence 688999999999999998874 25688999999863
No 9
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=14.88 E-value=54 Score=27.33 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHh-cCCCCchhHHHHHHHHH
Q 043280 220 SMQEMVEARVQHNAKVDWDFMEELLFCYLN-LNEKKSYKFILSAFVDL 266 (298)
Q Consensus 220 SM~EMI~~~~~~~~i~dw~dLEELL~CYLs-LN~~~~H~~Iv~AF~Dl 266 (298)
.+++...++ |+.+.+++.+++..|-. +.+..--++|-+|.+|-
T Consensus 22 Ale~lLieK----Gli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp 65 (203)
T d1ugpa_ 22 ALESMLIEQ----GILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHT----TSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHc----CCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCH
Confidence 344444444 58899999999999997 67777778888988763
No 10
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=12.11 E-value=88 Score=25.85 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhc-CCCCchhHHHHHHHH
Q 043280 210 SPSPYDDFRRSMQEMVEARVQHNAKVDWDFMEELLFCYLNL-NEKKSYKFILSAFVD 265 (298)
Q Consensus 210 S~DPy~DFR~SM~EMI~~~~~~~~i~dw~dLEELL~CYLsL-N~~~~H~~Iv~AF~D 265 (298)
..+|..+=-+.|++++.++| +.+.+++..++..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKG----li~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKG----LVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTT----CSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 45788888889999999887 78999999999999765 455556778888776
Done!