BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043281
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
           Cell Carcinoma Antigen Recognized By T Cells 3
          Length = 100

 Score = 31.2 bits (69), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 117 LFMPGIPGPVQRLDLEKVCKTYGKTVHFWQVDKGDNLPLGLPQIMMALTRDGQLYEN--- 173
           LF+ G+P    + +LE++CK +G       V      P GL  +          YEN   
Sbjct: 20  LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVE---------YENESQ 70

Query: 174 LAQDVEKSYGVSFDKERVNRAYMN-GPEHG 202
            +Q V K  G++  +  +  A  N GP  G
Sbjct: 71  ASQAVMKMDGMTIKENIIKVAISNSGPSSG 100


>pdb|3C2H|A Chain A, Crystal Structure Of Sys-1 At 2.6a Resolution
 pdb|3C2H|B Chain B, Crystal Structure Of Sys-1 At 2.6a Resolution
          Length = 619

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 123 PGPVQRLDLEKVCKTYGKTVHFWQVDKGDNLPLGLPQIM 161
           P P+QRL + K  +T+ +   F QVD+  N+P  + QI+
Sbjct: 18  PDPMQRLHMAKTIRTWIRQDKFAQVDQA-NMPNCVQQIL 55


>pdb|3I3F|A Chain A, Hypothetical Protein From Giardia Lamblia Gl50803_14299
 pdb|3I3F|B Chain B, Hypothetical Protein From Giardia Lamblia Gl50803_14299
 pdb|3I3F|C Chain C, Hypothetical Protein From Giardia Lamblia Gl50803_14299
          Length = 141

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 9/50 (18%)

Query: 65  DEMRQCLIYNSAEADARLIGLEYIISENLFL--TLPDEEKPLWHTHEFEV 112
           D +R+CL Y ++       GL+YI+S N+FL  +L D E+  ++    EV
Sbjct: 66  DNIRKCLEYANS-------GLDYIVSLNIFLSTSLSDSEEARFNELYREV 108


>pdb|3DWC|A Chain A, Trypanosoma Cruzi Metallocarboxypeptidase 1
 pdb|3DWC|C Chain C, Trypanosoma Cruzi Metallocarboxypeptidase 1
 pdb|3DWC|D Chain D, Trypanosoma Cruzi Metallocarboxypeptidase 1
 pdb|3DWC|B Chain B, Trypanosoma Cruzi Metallocarboxypeptidase 1
          Length = 505

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 1   MPSAHPEVPGDPTQTGTAFLETSTAAIQGFVPTNKIHQHLCAF-----HFYGDDMTRQVE 55
           +P    EV       G   LE      +G  P +K  + LC F      F  D     V 
Sbjct: 182 LPELLKEVQEKQKALGETVLEP-----KGPFPVSK-QEALCRFFMDVWKFDFDGGRLDVS 235

Query: 56  AHHFCGHQNDEMRQCLIYNSAEADARLIGL 85
           AH FCG+  +++R    Y   E    L+G+
Sbjct: 236 AHPFCGNSKEDVRITTKYTETEFVTSLLGV 265


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,767,029
Number of Sequences: 62578
Number of extensions: 323959
Number of successful extensions: 705
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)