BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043281
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0JB00|A1OB_LOXRU Sphingomyelin phosphodiesterase D LruSicTox-alphaIC1b (Fragment)
OS=Loxosceles rufescens PE=2 SV=1
Length = 273
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 130 DLEKVCKTYGKTVHFWQVDKGDN-LPLGLPQIMMAL-TRDGQLYENLAQDVEKSYGVSFD 187
D+EK K G T H WQ D N LP GL ++ +A+ RD + + K Y + D
Sbjct: 167 DVEKAYKNAGVTGHVWQSDGITNCLPRGLSRVKLAIANRDSG-----SGIINKVYYWTVD 221
Query: 188 KERVNRAYMNGPEHGI 203
K R ++ GI
Sbjct: 222 KRSTTRNSLDAGVDGI 237
>sp|Q00828|RAPA_BACSU Response regulator aspartate phosphatase A OS=Bacillus subtilis
(strain 168) GN=rapA PE=2 SV=2
Length = 378
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 130 DLEKVCKTYGKTVHFWQVDKGDNLP---LGLPQIMMALTRDG------------------ 168
+L+K + +GK+V + +K DNLP L Q++ D
Sbjct: 237 ELQKAAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSD 296
Query: 169 QLYENLAQDVEKSYGVSFDKERVNRAYMNGPEHGIHP 205
+L+ L Q + YG + D E V+ + EH ++P
Sbjct: 297 ELFVELFQFLHALYGKNIDTESVSHTFQFLEEHMLYP 333
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 88 IISENLFLTLPDEEKPLWH---THEFEVKSGVLFMPGIPGPVQRLDLEKVCKTYGKTVHF 144
+ N FLT K +WH + EV + + +P ++R ++ V +T+G F
Sbjct: 300 VFPNNSFLTCSGVFK-VWHPIDANTTEVWTYAMVEKDMPEDLKRRLVDAVQRTFGP-AGF 357
Query: 145 WQVDKGDNLPLGLPQIMMALTRDGQLYENLA 175
W+ D DN+ +RDG L NL
Sbjct: 358 WESDDNDNMETVSQNAKKYQSRDGDLVSNLG 388
>sp|Q9CFG7|XYLA_LACLA Xylose isomerase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=xylA PE=3 SV=1
Length = 439
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 83 IGLEYIISEN---LFLTLPDEEKPLWHTHEFEVKSGVLFMPGIPGPVQRLDLEKVCKTYG 139
+ ++Y S N +FL P ++P+ H ++F+ + + F+ Q+ DL+K K
Sbjct: 215 LAIDYAKSINHLPIFLIEPKPKEPMTHQYDFDAATALAFL-------QKYDLDKYFKLNL 267
Query: 140 KTVHFWQV 147
+T H W V
Sbjct: 268 ETNHAWLV 275
>sp|A6NMZ7|CO6A6_HUMAN Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2
Length = 2263
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 143 HFWQVDKGDNLPLGLPQIMMALTRDGQLYENLAQDVE 179
H+++ D G + G PQ+++ LT DGQ + +AQ E
Sbjct: 1088 HYFRPDMGSRINTGTPQVLLVLT-DGQSQDEVAQAAE 1123
>sp|A2T375|RK2_ANGEV 50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta
GN=rpl2 PE=3 SV=1
Length = 277
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 57 HHFCGHQNDEMRQCLIYNSAEADARLIGLEYIISENLFLTLPDEE--KPLWHTHEFEVKS 114
H GH+ R N + R+ +EY + N ++ L + E + + H +K
Sbjct: 53 HRGGGHKRLYRRMDFRRNKIDVPGRIDSIEYDPNRNTYICLVNYEDGEKRYILHPRGIKI 112
Query: 115 GVLFMPGIPGPVQRLDLEKVCKT-YGKTVHFWQV--DKGDNLPLGLPQIMMALTRDGQL 170
G + + G P+ R + + K G T+H ++ KG L + + ++G+L
Sbjct: 113 GDMIVSGSEAPISRGNALPLSKMPLGTTIHNVEITPGKGGQLARAAGAVAKLIAKEGRL 171
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 117 LFMPGIPGPVQRLDLEKVCKTYGKTVHFWQVDKGDNLPLGLPQIMMALTRDGQLYEN--- 173
LF+ G+P + +LE++CK +G V P GL + YEN
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVE---------YENESQ 853
Query: 174 LAQDVEKSYGVSFDKERVNRAYMNGPEHGIHPK 206
+Q V K G++ + + A N P+ + K
Sbjct: 854 ASQAVMKMDGMTIKENIIKVAISNPPQRKVPEK 886
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 117 LFMPGIPGPVQRLDLEKVCKTYGKTVHFWQVDKGDNLPLGLPQIMMALTRDGQLYEN--- 173
LF+ G+P + +LE++CK +G V P GL + YEN
Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVE---------YENESQ 871
Query: 174 LAQDVEKSYGVSFDKERVNRAYMNGPEHGIHPK 206
+Q V K G++ + + A N P+ + K
Sbjct: 872 ASQAVMKMDGMTIKENVIKVAISNPPQRKVPEK 904
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,137,786
Number of Sequences: 539616
Number of extensions: 4057703
Number of successful extensions: 8538
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8537
Number of HSP's gapped (non-prelim): 12
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)