Query 043281
Match_columns 234
No_of_seqs 111 out of 169
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oh1_A Staphostatin A; cystein 36.7 22 0.00077 27.9 2.8 30 57-89 52-81 (109)
2 2ipq_X Hypothetical protein ST 32.7 30 0.001 27.8 3.0 38 61-100 84-127 (135)
3 4h61_A Mediator of RNA polymer 28.6 12 0.00041 31.4 -0.0 33 81-120 67-99 (175)
4 2fqp_A Hypothetical protein BP 26.5 20 0.00069 25.2 0.9 24 96-119 24-52 (97)
5 3u65_B TP33 protein; tetratric 23.7 21 0.00073 31.3 0.7 21 84-104 227-247 (328)
6 2y38_A Laminin subunit alpha-5 19.6 31 0.001 32.3 0.9 64 68-147 67-153 (403)
7 2i3e_A G-rich; rich protein, C 19.3 18 0.00063 31.7 -0.7 92 15-111 18-132 (222)
8 3cqb_A Probable protease HTPX 18.3 31 0.0011 25.7 0.5 35 68-102 44-83 (107)
9 2eqr_A N-COR1, N-COR, nuclear 17.7 45 0.0015 22.6 1.2 24 120-143 12-35 (61)
10 4ds1_A Dynein light chain 1, c 17.1 61 0.0021 24.3 1.9 15 130-144 50-64 (97)
No 1
>1oh1_A Staphostatin A; cysteine proteinase inhibitor, cysteine protease inhibitor, staphopain inhibitor, NOT similar to cystatins; NMR {Staphylococcus aureus} SCOP: b.61.2.2
Probab=36.66 E-value=22 Score=27.87 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.7
Q ss_pred cccccccCcccceeEeeeCCCCCcceeeeeeee
Q 043281 57 HHFCGHQNDEMRQCLIYNSAEADARLIGLEYII 89 (234)
Q Consensus 57 HHYC~~vneD~~QCliyDs~~~~ArLIGIEYiI 89 (234)
.--|+-+|+|-+|-++|.-|.+| |=||-||
T Consensus 52 ~YiCk~INedsr~iiL~N~dN~n---IiIEiii 81 (109)
T 1oh1_A 52 DYICKYINTEHKQLTLYNKNNSS---IVIEIFI 81 (109)
T ss_dssp CEEEEEEETTTTEEEEEETTTSC---EEEEEEC
T ss_pred hhhhhhhcccceEEEEecCCCCc---EEEEEEE
Confidence 45699999999999999988776 4577665
No 2
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=32.69 E-value=30 Score=27.84 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=27.0
Q ss_pred cccCcccceeEeeeCCCCC---cceeeeeeeechhh--h-cCCCCc
Q 043281 61 GHQNDEMRQCLIYNSAEAD---ARLIGLEYIISENL--F-LTLPDE 100 (234)
Q Consensus 61 ~~vneD~~QCliyDs~~~~---ArLIGIEYiISe~l--f-~tLP~e 100 (234)
..=+..+..|-+|+++... .||-| |+|.... | ..+|++
T Consensus 84 ~~~g~ni~~~~vy~gprk~g~~~~L~G--YLi~~~~~~~~~~~P~d 127 (135)
T 2ipq_X 84 VSDSRRFWQCCLYEEPGGRGRYKKLTG--YLIKMSEIYANGNFPDD 127 (135)
T ss_dssp CBTTBCCEEEEEEEETTTEEEEEEEEE--EEEEHHHHC-CCCCCCC
T ss_pred cCCCccEEEEEEeeCCCcCCCcceEEE--EEEcCchhhcCCCCCCC
Confidence 4456789999999999955 78887 8886553 4 446543
No 3
>4h61_A Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 2.70A {Schizosaccharomyces pombe} PDB: 4h63_F
Probab=28.60 E-value=12 Score=31.37 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred ceeeeeeeechhhhcCCCCcccccCccccceecceeeeCC
Q 043281 81 RLIGLEYIISENLFLTLPDEEKPLWHTHEFEVKSGVLFMP 120 (234)
Q Consensus 81 rLIGIEYiISe~lf~tLP~eEkklWHsH~yEVkSG~L~~p 120 (234)
++.||||+|... .|--||+.++.+-.|+.=+.|
T Consensus 67 ~m~GiEy~l~~~-------~~p~lfvI~Kq~R~~~~~~~~ 99 (175)
T 4h61_A 67 RLTGIQFVIIHE-------RPPFLWVIQKQNRLNENEVKP 99 (175)
T ss_dssp TCCEEEEEEEEE-------ETTTEEEEEEEEECSSSCEEE
T ss_pred cCCCceEEEeec-------CCCceEEEEEEEEcCCCcceE
Confidence 568999999753 345699999988877754443
No 4
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=26.54 E-value=20 Score=25.17 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=17.2
Q ss_pred CCCCcccccCccccce-----ecceeeeC
Q 043281 96 TLPDEEKPLWHTHEFE-----VKSGVLFM 119 (234)
Q Consensus 96 tLP~eEkklWHsH~yE-----VkSG~L~~ 119 (234)
+|++.+.--||+|..+ |.+|.+..
T Consensus 24 ~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~ 52 (97)
T 2fqp_A 24 RFPPGGETGWHRHSMDYVVVPMTTGPLLL 52 (97)
T ss_dssp EECTTCBCCSEECCSCEEEEESSCEEEEE
T ss_pred EECCCCCCCCEECCCCcEEEEEeecEEEE
Confidence 3556555559999983 68898764
No 5
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=23.66 E-value=21 Score=31.32 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.5
Q ss_pred eeeeeechhhhcCCCCccccc
Q 043281 84 GLEYIISENLFLTLPDEEKPL 104 (234)
Q Consensus 84 GIEYiISe~lf~tLP~eEkkl 104 (234)
..-.+||.+.|++||+++|+.
T Consensus 227 ~~~~~~n~~~w~~L~~e~q~~ 247 (328)
T 3u65_B 227 VIGMLISDGSWARIPSRYHDA 247 (328)
T ss_dssp EEEEEEEHHHHTTSCGGGHHH
T ss_pred ceEEEEcHHHHhcCCHHHHHH
Confidence 456899999999999999875
No 6
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=19.59 E-value=31 Score=32.28 Aligned_cols=64 Identities=20% Similarity=0.425 Sum_probs=31.4
Q ss_pred ceeEeeeCCCCCcceeeeeeeechhhhcCCCCcccccCcccc-------------------ceecceeeeCC--CCChH-
Q 043281 68 RQCLIYNSAEADARLIGLEYIISENLFLTLPDEEKPLWHTHE-------------------FEVKSGVLFMP--GIPGP- 125 (234)
Q Consensus 68 ~QCliyDs~~~~ArLIGIEYiISe~lf~tLP~eEkklWHsH~-------------------yEVkSG~L~~p--~vP~~- 125 (234)
.+|-+=|+..++ +---+||||. .+...|-|-. |||-.=.|..- .-|++
T Consensus 67 ~~C~~Cda~~p~-~~Hp~~~~~D---------~~~twWQS~~~~~g~~~~~V~itLdL~~~f~~t~v~l~F~~spRP~~m 136 (403)
T 2y38_A 67 QYCDICTAANSN-KAHPVSNAID---------GTERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPRPDLW 136 (403)
T ss_dssp ---------------CCGGGTTS---------SSSCCEECCCSTTCSSTTCCEEEEEEEEEEEEEEEEEEECSSCCCSEE
T ss_pred CccCccCCCCcc-ccCcHHHhcc---------CCceeeccCCccCCCccccceeEEeCCCcEEEEEEEEEecCCCCCCeE
Confidence 457777776653 3456788884 2356887763 55544444442 34532
Q ss_pred -hHhHHHHHhhhhcCceEEeecc
Q 043281 126 -VQRLDLEKVCKTYGKTVHFWQV 147 (234)
Q Consensus 126 -ae~~~M~~l~~tYGKt~HtWq~ 147 (234)
.|| ..-|||||.-||.
T Consensus 137 ~ier------S~D~G~tW~p~qy 153 (403)
T 2y38_A 137 VLER------STDFGHTYQPWQF 153 (403)
T ss_dssp EEEE------ESSSSSSEEEEEE
T ss_pred EEEe------ccCCCCCccceec
Confidence 344 5678999999995
No 7
>2i3e_A G-rich; rich protein, CNP, 2',3'-cyclic-nucleotide 3'- phosphodiesterase, nerve regeneration, hydrolase; NMR {Carassius auratus}
Probab=19.27 E-value=18 Score=31.75 Aligned_cols=92 Identities=13% Similarity=0.250 Sum_probs=71.0
Q ss_pred chhhhHHHHHhhhcCCCchHHHHhhhhhcccccCCCCCceeecccccccCcccceeEe-e-------------------e
Q 043281 15 TGTAFLETSTAAIQGFVPTNKIHQHLCAFHFYGDDMTRQVEAHHFCGHQNDEMRQCLI-Y-------------------N 74 (234)
Q Consensus 15 ~~t~~Le~gA~~lQ~~~Pv~~i~~hL~aFH~ya~d~~rqvEAHHYC~~vneD~~QCli-y-------------------D 74 (234)
...+++.+|-++++...-+++|..||-.| ..++...+.--||-. ++.+.-|.- | +
T Consensus 18 ~s~~l~~~~~~fl~tL~~l~aFkk~~~~f---~~e~~~~~dL~~yf~--~pg~lHCTtkfcdyGka~GAeeYa~~~vVk~ 92 (222)
T 2i3e_A 18 EEERIKCATMDFLKTLDTLEAFKEHISEF---TGEAEKEVDLEQYFQ--NPLQLHCTTKFCDYGKAEGAKEYAELQVVKE 92 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHTHHHH---HTTCSSSSTHHHHSB--CCSSCEEEEEECCSSSCHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc---ccccchhhhHHHhcC--CCCCceeeeeecccCCCcchHHHHHHHHHHH
Confidence 34678899999999999999999999988 778888988888855 677888863 2 2
Q ss_pred CCCCCcceeeeeeeechhhhc---CCCCcccccCccccce
Q 043281 75 SAEADARLIGLEYIISENLFL---TLPDEEKPLWHTHEFE 111 (234)
Q Consensus 75 s~~~~ArLIGIEYiISe~lf~---tLP~eEkklWHsH~yE 111 (234)
|-..--.|-=+.++|++|.|- .|+++|..||-.-+++
T Consensus 93 sygk~ftL~i~~l~vTprT~GARV~Lte~Ql~LWp~d~dk 132 (222)
T 2i3e_A 93 SLTKSYELSVTALIVTPRTFGARVALTEAQVKLWPEGADK 132 (222)
T ss_dssp GGGCEEEEEEEEEEECSSEEEEEEECCHHHHHTSCTGGGG
T ss_pred hhcceeEEEEEEEEecccccceEEEccHhhhhhCCCCccc
Confidence 222333455567888888885 5888888888887766
No 8
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=18.32 E-value=31 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=27.4
Q ss_pred ceeEeeeCCCCCcceeeee----e-eechhhhcCCCCccc
Q 043281 68 RQCLIYNSAEADARLIGLE----Y-IISENLFLTLPDEEK 102 (234)
Q Consensus 68 ~QCliyDs~~~~ArLIGIE----Y-iISe~lf~tLP~eEk 102 (234)
..-.+.|++.+||=.+|.- | +|+..|.+.|+++|-
T Consensus 44 ~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l~~~El 83 (107)
T 3cqb_A 44 PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNMTRDEA 83 (107)
T ss_dssp CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHSCHHHH
T ss_pred CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhCCHHHH
Confidence 3456788899999999964 2 578889999988874
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.75 E-value=45 Score=22.64 Aligned_cols=24 Identities=4% Similarity=-0.166 Sum_probs=20.6
Q ss_pred CCCChHhHhHHHHHhhhhcCceEE
Q 043281 120 PGIPGPVQRLDLEKVCKTYGKTVH 143 (234)
Q Consensus 120 p~vP~~ae~~~M~~l~~tYGKt~H 143 (234)
.+.+...|++.+++....|||-|+
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~ 35 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFG 35 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHH
Confidence 356788999999999999999764
No 10
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=17.15 E-value=61 Score=24.30 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHhhhhcCceEEe
Q 043281 130 DLEKVCKTYGKTVHF 144 (234)
Q Consensus 130 ~M~~l~~tYGKt~Ht 144 (234)
.-+.+-++||.+||-
T Consensus 50 IK~~fDkkyG~~Whc 64 (97)
T 4ds1_A 50 VKKQLDVKYGNTWHV 64 (97)
T ss_dssp HHHHHHHHHCSCEEE
T ss_pred HHHHHhCccCCCCEE
Confidence 334566799999985
Done!