Query 043281
Match_columns 234
No_of_seqs 111 out of 169
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oh1a_ b.61.2.2 (A:) Staphost 35.9 11 0.0008 27.8 2.8 30 57-89 52-81 (109)
2 d1sdwa1 b.121.1.2 (A:45-198) P 31.4 16 0.0012 27.3 3.2 30 63-92 30-60 (154)
3 d3e2ba1 d.39.1.1 (A:3-89) Dyne 21.9 21 0.0015 24.5 2.0 16 129-144 39-54 (87)
4 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 20.2 19 0.0014 22.8 1.4 21 123-143 5-25 (65)
5 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 18.7 7.2 0.00052 26.3 -1.1 16 92-107 39-54 (80)
6 d2ar1a1 b.122.1.8 (A:7-163) Hy 17.0 60 0.0044 24.7 4.0 22 69-90 50-71 (157)
7 d1i11a_ a.21.1.1 (A:) Sox-5 {M 16.9 14 0.0011 23.8 0.2 15 92-106 39-53 (70)
8 d2ftxb1 d.300.1.2 (B:155-213) 15.7 16 0.0011 24.5 0.1 32 66-97 21-57 (59)
9 d1ckta_ a.21.1.1 (A:) High mob 14.9 16 0.0012 23.3 0.0 15 92-106 40-54 (71)
10 d2lefa_ a.21.1.1 (A:) Lymphoid 14.9 10 0.00074 25.6 -1.1 17 91-107 38-54 (86)
No 1
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=35.94 E-value=11 Score=27.82 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.6
Q ss_pred cccccccCcccceeEeeeCCCCCcceeeeeeee
Q 043281 57 HHFCGHQNDEMRQCLIYNSAEADARLIGLEYII 89 (234)
Q Consensus 57 HHYC~~vneD~~QCliyDs~~~~ArLIGIEYiI 89 (234)
.--|+-+|+|-+|-++|.-|.++ |=||-||
T Consensus 52 ~YiCk~INedsr~iiL~N~dN~n---IiIEiii 81 (109)
T d1oh1a_ 52 DYICKYINTEHKQLTLYNKNNSS---IVIEIFI 81 (109)
T ss_dssp CEEEEEEETTTTEEEEEETTTSC---EEEEEEC
T ss_pred hhhhhhhcccceeEEEecCCCCc---EEEEEEE
Confidence 45699999999999999988776 4577665
No 2
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.44 E-value=16 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.2
Q ss_pred cCcccceeEeeeCC-CCCcceeeeeeeechh
Q 043281 63 QNDEMRQCLIYNSA-EADARLIGLEYIISEN 92 (234)
Q Consensus 63 vneD~~QCliyDs~-~~~ArLIGIEYiISe~ 92 (234)
-+.|...|.++|-+ +.+..++|+|.+..++
T Consensus 30 ~~~d~Y~C~~~~~p~~~~~~i~~~ep~~n~~ 60 (154)
T d1sdwa1 30 KESDTYFCMSMRLPVDEEAFVIDFKPRASMD 60 (154)
T ss_dssp SSSSEEEEEEEECSCSSCEEEEEEEEECCTT
T ss_pred CCceeEEEEEecCCCCCceeEEEEEEcCCCC
Confidence 46788999999987 4588999999876543
No 3
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.89 E-value=21 Score=24.51 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=12.6
Q ss_pred HHHHHhhhhcCceEEe
Q 043281 129 LDLEKVCKTYGKTVHF 144 (234)
Q Consensus 129 ~~M~~l~~tYGKt~Ht 144 (234)
..-+.+-++||.+||-
T Consensus 39 ~IK~~~D~kyg~~Whc 54 (87)
T d3e2ba1 39 YIKKEFDKKYNPTWHC 54 (87)
T ss_dssp HHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHhhCCccEE
Confidence 3555678899999996
No 4
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.21 E-value=19 Score=22.82 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=17.3
Q ss_pred ChHhHhHHHHHhhhhcCceEE
Q 043281 123 PGPVQRLDLEKVCKTYGKTVH 143 (234)
Q Consensus 123 P~~ae~~~M~~l~~tYGKt~H 143 (234)
+...|...+.+++..||+-|.
T Consensus 5 WT~eEd~~l~~~~~~~G~~W~ 25 (65)
T d2cu7a1 5 WTIEEKELFEQGLAKFGRRWT 25 (65)
T ss_dssp CCHHHHHHHHHHHHHTCSCHH
T ss_pred CCHHHHHHHHHHHHHhcchHH
Confidence 557889999999999998543
No 5
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.65 E-value=7.2 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.6
Q ss_pred hhhcCCCCcccccCcc
Q 043281 92 NLFLTLPDEEKPLWHT 107 (234)
Q Consensus 92 ~lf~tLP~eEkklWHs 107 (234)
..|..|+++||+.|.-
T Consensus 39 ~~W~~l~~eeK~~y~~ 54 (80)
T d1gt0d_ 39 AEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred HHHCcCCHHHHHHHHH
Confidence 4599999999999864
No 6
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=17.02 E-value=60 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.1
Q ss_pred eeEeeeCCCCCcceeeeeeeec
Q 043281 69 QCLIYNSAEADARLIGLEYIIS 90 (234)
Q Consensus 69 QCliyDs~~~~ArLIGIEYiIS 90 (234)
.|++|-|+....-+.||+=|++
T Consensus 50 ~~~fYHS~~~~~~i~g~~~v~~ 71 (157)
T d2ar1a1 50 KVLFYHSNTKEPGVAGLAEVVR 71 (157)
T ss_dssp EEEEEECSSSSCEEEEEEEEEE
T ss_pred EEEEEEcCCCCCceEEEEEEec
Confidence 6999999999888999987665
No 7
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.90 E-value=14 Score=23.83 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=12.8
Q ss_pred hhhcCCCCcccccCc
Q 043281 92 NLFLTLPDEEKPLWH 106 (234)
Q Consensus 92 ~lf~tLP~eEkklWH 106 (234)
..|++|+++||+.|.
T Consensus 39 ~~Wk~ls~~eK~~y~ 53 (70)
T d1i11a_ 39 SRWKAMTNLEKQPYY 53 (70)
T ss_dssp HHHTTSCSGGGHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 469999999998774
No 8
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.67 E-value=16 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=24.7
Q ss_pred ccceeEeeeCCCCCcceeeee-----eeechhhhcCC
Q 043281 66 EMRQCLIYNSAEADARLIGLE-----YIISENLFLTL 97 (234)
Q Consensus 66 D~~QCliyDs~~~~ArLIGIE-----YiISe~lf~tL 97 (234)
|--||+|++++..+-.+.-|+ |.+|--+|++|
T Consensus 21 e~~k~iI~n~~~g~v~vv~id~k~S~fF~tnYiWd~L 57 (59)
T d2ftxb1 21 ENDQVLINRKNDGNIDILPLDNNLSDFYKTKYIWERL 57 (59)
T ss_dssp GGTEEEECSSCSSCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCcEEEEEcCCcccHHHHHHHHHHHh
Confidence 446999999999988888875 66666666655
No 9
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.88 E-value=16 Score=23.30 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.6
Q ss_pred hhhcCCCCcccccCc
Q 043281 92 NLFLTLPDEEKPLWH 106 (234)
Q Consensus 92 ~lf~tLP~eEkklWH 106 (234)
..|+.|+++||+-|.
T Consensus 40 ~~Wk~ls~~eK~~y~ 54 (71)
T d1ckta_ 40 ERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHTCCTTTSHHHH
T ss_pred HHHcCCCHHHHHHHH
Confidence 469999999998773
No 10
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.88 E-value=10 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.0
Q ss_pred hhhhcCCCCcccccCcc
Q 043281 91 ENLFLTLPDEEKPLWHT 107 (234)
Q Consensus 91 e~lf~tLP~eEkklWHs 107 (234)
-..|.+||++||.-|.-
T Consensus 38 g~~Wk~ls~~eK~~y~~ 54 (86)
T d2lefa_ 38 GRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 36799999999998753
Done!