Query 043282
Match_columns 119
No_of_seqs 103 out of 585
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 1.9E-38 4.1E-43 252.0 10.0 118 2-119 178-305 (318)
2 COG5058 LAG1 Protein transport 100.0 3.5E-30 7.5E-35 204.7 10.1 115 2-119 249-382 (395)
3 smart00724 TLC TRAM, LAG1 and 99.8 5.3E-20 1.2E-24 136.2 6.6 102 2-103 91-204 (205)
4 PF03798 TRAM_LAG1_CLN8: TLC d 99.6 2.7E-16 5.8E-21 114.4 5.2 96 2-97 89-198 (198)
5 KOG4561 Uncharacterized conser 97.7 0.00021 4.7E-09 56.7 8.6 89 18-107 170-271 (281)
6 KOG1608 Protein transporter of 90.3 0.27 5.8E-06 39.9 2.8 61 2-64 209-269 (374)
7 PF14293 YWFCY: YWFCY protein 58.5 9.1 0.0002 23.9 2.0 13 82-94 21-33 (61)
8 KOG4474 Uncharacterized conser 53.0 59 0.0013 25.8 6.2 82 15-97 141-231 (253)
9 TIGR00847 ccoS cytochrome oxid 46.4 63 0.0014 19.3 4.8 17 97-114 20-36 (51)
10 PF07708 Tash_PEST: Tash prote 31.6 23 0.0005 17.1 0.6 9 111-119 11-19 (19)
11 PRK01637 hypothetical protein; 27.7 2.9E+02 0.0064 21.4 7.1 29 73-101 235-263 (286)
12 KOG3814 Signaling protein van 24.6 3.4E+02 0.0074 23.3 6.6 29 72-100 185-215 (531)
13 PF08627 CRT-like: CRT-like; 23.0 2.3E+02 0.0051 20.2 4.7 82 28-114 40-122 (130)
14 PF13160 DUF3995: Protein of u 21.5 69 0.0015 22.2 1.8 13 81-93 2-14 (125)
15 PF12129 Phtf-FEM1B_bdg: Male 21.4 1.8E+02 0.0038 21.5 3.9 37 54-90 76-113 (159)
16 PF10055 DUF2292: Uncharacteri 20.9 70 0.0015 18.0 1.4 15 7-21 11-25 (38)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-38 Score=251.99 Aligned_cols=118 Identities=39% Similarity=0.700 Sum_probs=113.6
Q ss_pred eeeeccCcccceeeEEecccchhhHhHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHHhhhhhhhccc----------ch
Q 043282 2 INIFLKRCIIGSIFLALHDASDVFMEVAKVFKYFENELGATVIFGLFAISRVILQLIFFSFRVIKCTR----------DM 71 (119)
Q Consensus 2 ~Sy~~n~~riG~lVl~lHD~sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~~~~----------~~ 71 (119)
+||..||+|+|++|+++||+||++||++|++||.+.+.+++.+|++|+.+|+++||+.+|+|+++++. ++
T Consensus 178 lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~~~~~~~ 257 (318)
T KOG1607|consen 178 LSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSLRQYQPK 257 (318)
T ss_pred HHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999998 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccCC
Q 043282 72 FIYYMFNTMLLMLFVFQIYWWVLISSMIWRRLKSGKLREDIRSALKES 119 (119)
Q Consensus 72 ~~~~~~~~lL~~L~~LhiyWf~lIlki~~~~~~~g~~~~D~Rsd~e~~ 119 (119)
|.++++|++|.+||+||+||+++|+||++|++++|+..||+|||+|||
T Consensus 258 ~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g~~~eD~Rsd~~s~ 305 (318)
T KOG1607|consen 258 PSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRGMQGEDIRSDSESE 305 (318)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Confidence 899999999999999999999999999999998788899999998765
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.5e-30 Score=204.71 Aligned_cols=115 Identities=22% Similarity=0.360 Sum_probs=104.4
Q ss_pred eeeeccCcccceeeEEecccchhhHhHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHHhhhhhhhccc------------
Q 043282 2 INIFLKRCIIGSIFLALHDASDVFMEVAKVFKYFENELGATVIFGLFAISRVILQLIFFSFRVIKCTR------------ 69 (119)
Q Consensus 2 ~Sy~~n~~riG~lVl~lHD~sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~~~~------------ 69 (119)
.||..||+|+|..|..+||+||++|+.+|++||++. .+++..|++|+.+|+++|+++.. .++++++
T Consensus 249 lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln~-kIlw~vlt~~r~~g~~~L~ 326 (395)
T COG5058 249 LSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLNL-KILWSVLTAFRTIGNFVLD 326 (395)
T ss_pred HHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchhhcCceeeE
Confidence 589999999999999999999999999999999999 88999999999999999999855 7887776
Q ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccCC
Q 043282 70 -------DMFIYYMFNTMLLMLFVFQIYWWVLISSMIWRRLKSGKLREDIRSALKES 119 (119)
Q Consensus 70 -------~~~~~~~~~~lL~~L~~LhiyWf~lIlki~~~~~~~g~~~~D~Rsd~e~~ 119 (119)
..|.+.++..||.+||.+|+||+.||+||++|++.+|+ .+|.|||||||
T Consensus 327 va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~~e-~~D~RSd~e~e 382 (395)
T COG5058 327 VATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWEGE-LKDERSDDESE 382 (395)
T ss_pred eechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccccccC
Confidence 13567778889999999999999999999999996665 99999998775
No 3
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.81 E-value=5.3e-20 Score=136.25 Aligned_cols=102 Identities=32% Similarity=0.591 Sum_probs=92.0
Q ss_pred eeeeccCcccceeeEEecccchhhHhHHHHhhhhcCc--hhhHHHHHHHHHHHHHHHHHHhhhhhhhccc----------
Q 043282 2 INIFLKRCIIGSIFLALHDASDVFMEVAKVFKYFENE--LGATVIFGLFAISRVILQLIFFSFRVIKCTR---------- 69 (119)
Q Consensus 2 ~Sy~~n~~riG~lVl~lHD~sDi~L~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p~~vl~~~~---------- 69 (119)
.||..|++|.|.+++++||+||+|++.+|+++++|.+ ++.+..+++|+++|+++|++.+|..+..+..
T Consensus 91 ~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~~~~~~~~~~~~~~ 170 (205)
T smart00724 91 LSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLF 170 (205)
T ss_pred HHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 4788899999999999999999999999999999984 7889999999999999999999987776665
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043282 70 DMFIYYMFNTMLLMLFVFQIYWWVLISSMIWRRL 103 (119)
Q Consensus 70 ~~~~~~~~~~lL~~L~~LhiyWf~lIlki~~~~~ 103 (119)
+++.+..+.+++.+|++||+||+++|+|++.|..
T Consensus 171 ~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 171 PPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2455778889999999999999999999999875
No 4
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.63 E-value=2.7e-16 Score=114.39 Aligned_cols=96 Identities=25% Similarity=0.515 Sum_probs=84.2
Q ss_pred eeeeccCcccceeeEEecccchhhHhHHHHhhhh-cC-chhhHHHH--HHHHHHHHHHHHHHhhhhhhhccc--------
Q 043282 2 INIFLKRCIIGSIFLALHDASDVFMEVAKVFKYF-EN-ELGATVIF--GLFAISRVILQLIFFSFRVIKCTR-------- 69 (119)
Q Consensus 2 ~Sy~~n~~riG~lVl~lHD~sDi~L~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~~~p~~vl~~~~-------- 69 (119)
.|+..|..|.|..++++||+|||||+.+|++++. +. ++.....+ ++|+++|+.+|++.+|..+.+...
T Consensus 89 ~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~~~~~~~~~~ 168 (198)
T PF03798_consen 89 FSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVYWDVWPLPLW 168 (198)
T ss_pred HhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4677899999999999999999999999999999 55 56678888 999999999999999977666655
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043282 70 --DMFIYYMFNTMLLMLFVFQIYWWVLISS 97 (119)
Q Consensus 70 --~~~~~~~~~~lL~~L~~LhiyWf~lIlk 97 (119)
+++....+.+++.+|++||+||+++|+|
T Consensus 169 ~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 169 KVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1466778889999999999999999986
No 5
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=97.74 E-value=0.00021 Score=56.75 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=61.3
Q ss_pred ecccchhhHhHHHHhhhhcCch-hh-HHHHHHHHHHHHHHHHHHhhhhhhhccc-----------chhHHHHHHHHHHHH
Q 043282 18 LHDASDVFMEVAKVFKYFENEL-GA-TVIFGLFAISRVILQLIFFSFRVIKCTR-----------DMFIYYMFNTMLLML 84 (119)
Q Consensus 18 lHD~sDi~L~~aK~~~y~~~~~-~~-~~~F~~f~~~w~~~Rl~~~p~~vl~~~~-----------~~~~~~~~~~lL~~L 84 (119)
+--.|-+|+...+.+--+|.++ .. .+==.+..++|+..|+..+|+. -+..+ |+......++.=.+|
T Consensus 170 ~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 248 (281)
T KOG4561|consen 170 MAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYM-GWHYYWRYQGLVLNQVPPFLPLFLLGLNALL 248 (281)
T ss_pred eeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhchhHhHHHHHHHHHH
Confidence 3455666777776666666654 11 1122367889999999988843 32222 334455556667789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 043282 85 FVFQIYWWVLISSMIWRRLKSGK 107 (119)
Q Consensus 85 ~~LhiyWf~lIlki~~~~~~~g~ 107 (119)
.++|+|||..|.|.+.|.+.+++
T Consensus 249 ~v~Nl~Wf~km~~ga~K~~~~~~ 271 (281)
T KOG4561|consen 249 LVLNLYWFSKMVRGALKVLKKAK 271 (281)
T ss_pred HhhHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999997665
No 6
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=0.27 Score=39.95 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=53.7
Q ss_pred eeeeccCcccceeeEEecccchhhHhHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043282 2 INIFLKRCIIGSIFLALHDASDVFMEVAKVFKYFENELGATVIFGLFAISRVILQLIFFSFRV 64 (119)
Q Consensus 2 ~Sy~~n~~riG~lVl~lHD~sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~v 64 (119)
..|..|+.|.|.+.+.+|=++..+-++++.+...+.+ .+-.|.+++.+|+..|+...-.-|
T Consensus 209 gAYllnl~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaV 269 (374)
T KOG1608|consen 209 GAYLLNLNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAV 269 (374)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999988876 467999999999999998755433
No 7
>PF14293 YWFCY: YWFCY protein
Probab=58.52 E-value=9.1 Score=23.91 Aligned_cols=13 Identities=23% Similarity=1.070 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 043282 82 LMLFVFQIYWWVL 94 (119)
Q Consensus 82 ~~L~~LhiyWf~l 94 (119)
..+.++|+||+..
T Consensus 21 I~~l~ih~Y~~CY 33 (61)
T PF14293_consen 21 ILFLVIHFYWFCY 33 (61)
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999963
No 8
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=59 Score=25.76 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=48.8
Q ss_pred eEEecccchhhHhHHHHhhhhcCch---hhHHHHHHHHHHHHHHHHHHhhhhhhhccc---ch-hHHHH--HHHHHHHHH
Q 043282 15 FLALHDASDVFMEVAKVFKYFENEL---GATVIFGLFAISRVILQLIFFSFRVIKCTR---DM-FIYYM--FNTMLLMLF 85 (119)
Q Consensus 15 Vl~lHD~sDi~L~~aK~~~y~~~~~---~~~~~F~~f~~~w~~~Rl~~~p~~vl~~~~---~~-~~~~~--~~~lL~~L~ 85 (119)
...+.-++++||+.-++++-.|.++ .-.+.-.+-.++++.+|+.- |.++.+-.. |. +.++. ..+-+..+.
T Consensus 141 ~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~-~~~l~~~~i~~~~~~~~~~~~~~~gg~~~l~ 219 (253)
T KOG4474|consen 141 AALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIP-QIYLTYFLIANAPFLHWYLKLFALGGLLCLA 219 (253)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcc-ceeEEEEEeeeCCCcceehhHHHhhhHHHHH
Confidence 3456889999999999999988654 23445556678888889874 433333222 22 22322 123344555
Q ss_pred HHHHHHHHHHHH
Q 043282 86 VFQIYWWVLISS 97 (119)
Q Consensus 86 ~LhiyWf~lIlk 97 (119)
++|.+=+.-+++
T Consensus 220 ~~n~~l~~rll~ 231 (253)
T KOG4474|consen 220 VINTVLTLRLLA 231 (253)
T ss_pred HHHHHHHHHHHH
Confidence 666655544443
No 9
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=46.37 E-value=63 Score=19.31 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCcccccCc
Q 043282 97 SMIWRRLKSGKLREDIRS 114 (119)
Q Consensus 97 ki~~~~~~~g~~~~D~Rs 114 (119)
-...-.+++|| -+|..+
T Consensus 20 ~~f~Wavk~GQ-fDDle~ 36 (51)
T TIGR00847 20 VAFLWSLKSGQ-YDDLKG 36 (51)
T ss_pred HHHHHHHccCC-CCCCcc
Confidence 34445677898 666543
No 10
>PF07708 Tash_PEST: Tash protein PEST motif; InterPro: IPR011695 The PEST motif is found in one or more copies in Tash AT-hook proteins from Theileria annulata. Tash proteins are transported to the host nucleus and are thought to be involved in pathogenesis []. The PEST motif is often found in conjunction with the (IPR007480 from INTERPRO), whose function is unknown. These repeats may be part of the PEST motif (a signal for rapid proteolytic degradation) [], though this is not proven. This motif is also found in other T. annulata proteins, which have no other known domains.
Probab=31.60 E-value=23 Score=17.07 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=6.1
Q ss_pred ccCccccCC
Q 043282 111 DIRSALKES 119 (119)
Q Consensus 111 D~Rsd~e~~ 119 (119)
++-||+|++
T Consensus 11 Ei~SDeeee 19 (19)
T PF07708_consen 11 EIGSDEEEE 19 (19)
T ss_pred EecccccCC
Confidence 566787764
No 11
>PRK01637 hypothetical protein; Reviewed
Probab=27.68 E-value=2.9e+02 Score=21.42 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043282 73 IYYMFNTMLLMLFVFQIYWWVLISSMIWR 101 (119)
Q Consensus 73 ~~~~~~~lL~~L~~LhiyWf~lIlki~~~ 101 (119)
.|-.+.+....+.-+++.|..+++-...+
T Consensus 235 ~YGslg~vi~lllWlyl~~~ilL~Gaeln 263 (286)
T PRK01637 235 IYGALAVIPILFVWVYLSWCIVLLGAEIT 263 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888888888888855443
No 12
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=24.65 E-value=3.4e+02 Score=23.32 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=19.2
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 043282 72 FIYYMFNTMLL--MLFVFQIYWWVLISSMIW 100 (119)
Q Consensus 72 ~~~~~~~~lL~--~L~~LhiyWf~lIlki~~ 100 (119)
|--+++-++|+ +..+.--||.+.|+|+..
T Consensus 185 PRvf~~RAlll~LV~~~~fayWLFYiVri~~ 215 (531)
T KOG3814|consen 185 PRVFVVRALLLVLVFLIVFAYWLFYIVRILD 215 (531)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44444444444 446677899999999864
No 13
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=23.01 E-value=2.3e+02 Score=20.20 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=46.4
Q ss_pred HHHHhhhhcCchh-hHHHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043282 28 VAKVFKYFENELG-ATVIFGLFAISRVILQLIFFSFRVIKCTRDMFIYYMFNTMLLMLFVFQIYWWVLISSMIWRRLKSG 106 (119)
Q Consensus 28 ~aK~~~y~~~~~~-~~~~F~~f~~~w~~~Rl~~~p~~vl~~~~~~~~~~~~~~lL~~L~~LhiyWf~lIlki~~~~~~~g 106 (119)
..|.-+|.+...- .++.-.+.+++-+.+|..-.-+ .-..+.+.+.|-.|.+.|...-.+-+||.....|+- .+|
T Consensus 40 ~~k~k~~~k~s~~ke~~~L~v~~vv~V~s~v~N~VL-~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y----~t~ 114 (130)
T PF08627_consen 40 SEKIKDFLKQSYSKENFKLLVYVVVYVVSGVINRVL-YKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMY----FTG 114 (130)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchHHHHHhcccceehHHHHHHHHHHH----HcC
Confidence 3455556553211 2333444555556566554221 122223556777777888877788889987655543 356
Q ss_pred CcccccCc
Q 043282 107 KLREDIRS 114 (119)
Q Consensus 107 ~~~~D~Rs 114 (119)
...+|.|+
T Consensus 115 ~It~Emr~ 122 (130)
T PF08627_consen 115 DITKEMRA 122 (130)
T ss_pred CCCHHHHh
Confidence 66777775
No 14
>PF13160 DUF3995: Protein of unknown function (DUF3995)
Probab=21.53 E-value=69 Score=22.21 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 043282 81 LLMLFVFQIYWWV 93 (119)
Q Consensus 81 L~~L~~LhiyWf~ 93 (119)
+..+-.+|.||..
T Consensus 2 l~~~a~~H~YWA~ 14 (125)
T PF13160_consen 2 LALLALLHVYWAF 14 (125)
T ss_pred hHHHHHHHHHHHc
Confidence 4567789999974
No 15
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=21.35 E-value=1.8e+02 Score=21.52 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhhccc-chhHHHHHHHHHHHHHHHHHH
Q 043282 54 ILQLIFFSFRVIKCTR-DMFIYYMFNTMLLMLFVFQIY 90 (119)
Q Consensus 54 ~~Rl~~~p~~vl~~~~-~~~~~~~~~~lL~~L~~Lhiy 90 (119)
..|.+++|++.-+=.- ..+.-+.+..+|-+||+.++.
T Consensus 76 l~R~lf~P~~~~WW~Q~ts~~if~~ll~LY~lQv~~v~ 113 (159)
T PF12129_consen 76 LVRVLFFPFFSQWWIQQTSPWIFMFLLLLYLLQVIAVV 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4588888854321111 334444444444455555543
No 16
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.86 E-value=70 Score=18.00 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.3
Q ss_pred cCcccceeeEEeccc
Q 043282 7 KRCIIGSIFLALHDA 21 (119)
Q Consensus 7 n~~riG~lVl~lHD~ 21 (119)
+-.|.|++.+.+||-
T Consensus 11 ~~i~yGsV~iiiqdG 25 (38)
T PF10055_consen 11 KSIRYGSVTIIIQDG 25 (38)
T ss_pred hcCCcceEEEEEECC
Confidence 446899999999993
Done!