Query 043282
Match_columns 119
No_of_seqs 103 out of 585
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pjx_C Syntaxin-4; membrane tr 18.6 37 0.0013 16.9 0.7 9 111-119 12-20 (29)
2 2kih_A Matrix protein 2; S31N, 15.9 1.3E+02 0.0044 16.4 2.5 29 19-59 3-31 (43)
3 1ej5_A WAsp, wiskott-aldrich s 9.3 1E+02 0.0035 20.1 0.9 11 109-119 93-103 (107)
4 3txs_A Terminase DNA packaging 9.1 69 0.0024 20.7 -0.0 15 18-32 40-54 (94)
5 1zza_A Stannin, AG8_1; helix, 7.9 1.3E+02 0.0044 18.7 0.9 6 89-94 33-38 (90)
6 2hqx_A P100 CO-activator tudor 7.8 85 0.0029 22.5 0.0 11 109-119 231-241 (246)
7 4gd3_A NI/Fe-hydrogenase 1 B-t 7.3 4.8E+02 0.016 18.3 4.0 18 76-93 186-203 (235)
8 3cx5_I Cytochrome B-C1 complex 7.2 82 0.0028 18.8 -0.3 16 99-114 38-53 (65)
9 4a2n_B Isoprenylcysteine carbo 6.3 4.3E+02 0.015 18.3 3.2 24 38-61 3-26 (194)
10 2knc_A Integrin alpha-IIB; tra 5.2 5.3E+02 0.018 14.6 5.9 14 72-85 11-24 (54)
No 1
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=18.60 E-value=37 Score=16.89 Aligned_cols=9 Identities=22% Similarity=0.058 Sum_probs=4.5
Q ss_pred ccCccccCC
Q 043282 111 DIRSALKES 119 (119)
Q Consensus 111 D~Rsd~e~~ 119 (119)
|.-||+|+|
T Consensus 12 dnisddede 20 (29)
T 2pjx_C 12 DNISDDEDE 20 (29)
T ss_pred CCCCCccce
Confidence 444555553
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=15.87 E-value=1.3e+02 Score=16.43 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=18.2
Q ss_pred cccchhhHhHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHH
Q 043282 19 HDASDVFMEVAKVFKYFENELGATVIFGLFAISRVILQLIF 59 (119)
Q Consensus 19 HD~sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~ 59 (119)
.|-||++.-+|.+ .-++=.+.|+.-|+++
T Consensus 3 ~dssdplv~aa~i------------iGIlHLiLwildRlff 31 (43)
T 2kih_A 3 NDSSDPLVVAANI------------IGILHLILWILDRLFF 31 (43)
T ss_dssp ---CCHHHHHHHH------------HHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 4677777766544 4445678899999874
No 3
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=9.32 E-value=1e+02 Score=20.14 Aligned_cols=11 Identities=18% Similarity=0.136 Sum_probs=6.7
Q ss_pred ccccCccccCC
Q 043282 109 REDIRSALKES 119 (119)
Q Consensus 109 ~~D~Rsd~e~~ 119 (119)
.+=++||||||
T Consensus 93 ~~~i~s~~e~~ 103 (107)
T 1ej5_A 93 SRAIHSSDEGE 103 (107)
T ss_dssp SSCCCCCCSSC
T ss_pred hhcccCCCccc
Confidence 44567776654
No 4
>3txs_A Terminase DNA packaging enzyme small subunit; helix, small terminase, viral protein; 1.81A {Aeromonas phage 44RR2} PDB: 3txq_A
Probab=9.06 E-value=69 Score=20.68 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=11.7
Q ss_pred ecccchhhHhHHHHh
Q 043282 18 LHDASDVFMEVAKVF 32 (119)
Q Consensus 18 lHD~sDi~L~~aK~~ 32 (119)
+.|.+|+.||.||-.
T Consensus 40 l~daa~~aLE~AknS 54 (94)
T 3txs_A 40 LLDMAKIALENAKNA 54 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 467888899988864
No 5
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=7.93 E-value=1.3e+02 Score=18.75 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=3.0
Q ss_pred HHHHHH
Q 043282 89 IYWWVL 94 (119)
Q Consensus 89 iyWf~l 94 (119)
..|-++
T Consensus 33 gcwcyl 38 (90)
T 1zza_A 33 GCWCYL 38 (90)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 356554
No 6
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=7.80 E-value=85 Score=22.47 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred ccccCccccCC
Q 043282 109 REDIRSALKES 119 (119)
Q Consensus 109 ~~D~Rsd~e~~ 119 (119)
.+|+.||||+|
T Consensus 231 ~gd~~~dd~~~ 241 (246)
T 2hqx_A 231 YGDFRADDADE 241 (246)
T ss_dssp -----------
T ss_pred CCCCCcccccc
Confidence 47888887764
No 7
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=7.32 E-value=4.8e+02 Score=18.28 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043282 76 MFNTMLLMLFVFQIYWWV 93 (119)
Q Consensus 76 ~~~~lL~~L~~LhiyWf~ 93 (119)
....++.++.++|+|=..
T Consensus 186 ~~a~~l~~~v~lHv~aal 203 (235)
T 4gd3_A 186 LGMWLIGAFVIGHVYMAL 203 (235)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444567788889988543
No 8
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=7.24 E-value=82 Score=18.84 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=10.2
Q ss_pred HHHHHhcCCcccccCc
Q 043282 99 IWRRLKSGKLREDIRS 114 (119)
Q Consensus 99 ~~~~~~~g~~~~D~Rs 114 (119)
++....+|+.=+|++.
T Consensus 38 iw~~~NkGKlwkDIk~ 53 (65)
T 3cx5_I 38 WYENHNKGKLWKDVKA 53 (65)
T ss_dssp HHHHHTTTTSHHHHHH
T ss_pred HHHhccCCCCcccChh
Confidence 3455667777777664
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=6.35 E-value=4.3e+02 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 043282 38 ELGATVIFGLFAISRVILQLIFFS 61 (119)
Q Consensus 38 ~~~~~~~F~~f~~~w~~~Rl~~~p 61 (119)
+.+..+.|++-.+.|+..|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~ir~~~~~ 26 (194)
T 4a2n_B 3 ENLWKICFIVMFIIWVFVRKVYGT 26 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888899999987755
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.20 E-value=5.3e+02 Score=14.61 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHH
Q 043282 72 FIYYMFNTMLLMLF 85 (119)
Q Consensus 72 ~~~~~~~~lL~~L~ 85 (119)
|.|.+..+.+..|.
T Consensus 11 p~wiIi~svl~GLl 24 (54)
T 2knc_A 11 PIWWVLVGVLGGLL 24 (54)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 44444444444433
Done!