Query 043282
Match_columns 119
No_of_seqs 103 out of 585
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t3ta7 d.139.1.1 (A:817-1033) 13.9 25 0.0018 23.6 0.8 15 14-28 62-76 (217)
2 d1nexa1 a.157.1.1 (A:116-185) 13.3 56 0.004 18.1 2.1 20 23-42 14-33 (70)
3 d1fs1b1 a.157.1.1 (B:86-140) C 10.9 77 0.0056 16.7 2.1 20 23-42 13-32 (55)
4 d2e74d2 f.23.12.1 (D:12-45) IS 9.4 1.1E+02 0.0083 14.5 3.3 18 85-102 6-23 (34)
5 d2z1ea2 d.139.1.1 (A:156-334) 7.4 1.3E+02 0.0095 18.2 2.6 24 14-37 60-85 (179)
6 d2npta1 d.15.2.2 (A:4-108) Mit 6.5 36 0.0026 20.8 -0.7 6 112-117 69-74 (105)
7 d2c1ia1 c.6.2.3 (A:268-463) Pe 5.7 1.5E+02 0.011 18.6 2.2 26 10-36 142-168 (196)
8 d1ivsa2 a.27.1.1 (A:579-796) V 5.6 2E+02 0.015 18.2 2.9 22 18-39 64-85 (218)
9 d2iw0a1 c.6.2.3 (A:29-248) Chi 5.4 1.5E+02 0.011 18.9 2.0 28 11-38 170-199 (220)
10 d1pjra1 c.37.1.19 (A:1-318) DE 4.8 2.3E+02 0.017 18.3 2.8 24 95-118 292-317 (318)
No 1
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=13.89 E-value=25 Score=23.64 Aligned_cols=15 Identities=47% Similarity=0.390 Sum_probs=11.6
Q ss_pred eeEEecccchhhHhH
Q 043282 14 IFLALHDASDVFMEV 28 (119)
Q Consensus 14 lVl~lHD~sDi~L~~ 28 (119)
+|...||+||=-|-+
T Consensus 62 lI~s~HDiSdGGL~~ 76 (217)
T d1t3ta7 62 KLLAWHDRSDGGLLV 76 (217)
T ss_dssp CCSEEEECCTTHHHH
T ss_pred cEEEEEecCCchHHH
Confidence 577899999976544
No 2
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.29 E-value=56 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=14.7
Q ss_pred hhhHhHHHHhhhhcCchhhH
Q 043282 23 DVFMEVAKVFKYFENELGAT 42 (119)
Q Consensus 23 Di~L~~aK~~~y~~~~~~~~ 42 (119)
|.+.++.+++||++.+.+.+
T Consensus 14 ~~L~~li~AAnyL~I~~Ll~ 33 (70)
T d1nexa1 14 EMLYEIILAANYLNIKPLLD 33 (70)
T ss_dssp HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHH
Confidence 56777888888888776543
No 3
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.85 E-value=77 Score=16.66 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=14.4
Q ss_pred hhhHhHHHHhhhhcCchhhH
Q 043282 23 DVFMEVAKVFKYFENELGAT 42 (119)
Q Consensus 23 Di~L~~aK~~~y~~~~~~~~ 42 (119)
|.+.++.+++||++-+.+.+
T Consensus 13 ~~Lf~Li~AAnyL~I~~Lld 32 (55)
T d1fs1b1 13 GTLFELILAANYLDIKGLLD 32 (55)
T ss_dssp HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHH
Confidence 45677788888888776544
No 4
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.40 E-value=1.1e+02 Score=14.51 Aligned_cols=18 Identities=0% Similarity=0.030 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043282 85 FVFQIYWWVLISSMIWRR 102 (119)
Q Consensus 85 ~~LhiyWf~lIlki~~~~ 102 (119)
|+||+.||.-+--.+...
T Consensus 6 qfmnlltfgt~tg~alg~ 23 (34)
T d2e74d2 6 QFMNLLAFGTVTGVALGA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhh
Confidence 788888988776655443
No 5
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=7.42 E-value=1.3e+02 Score=18.23 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=17.7
Q ss_pred eeEEecccch--hhHhHHHHhhhhcC
Q 043282 14 IFLALHDASD--VFMEVAKVFKYFEN 37 (119)
Q Consensus 14 lVl~lHD~sD--i~L~~aK~~~y~~~ 37 (119)
.|-.+||+|| ..-++.+++.-.+.
T Consensus 60 ~i~a~~DiSdgGL~~~L~eia~~s~~ 85 (179)
T d2z1ea2 60 NIHAMKDPTRAGLSNALNEIARKSNV 85 (179)
T ss_dssp GEEEEECCCTTHHHHHHHHHHHHHTC
T ss_pred CceEEeccccchhHHHHHHHHHhcCC
Confidence 3578999999 56667777776653
No 6
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.49 E-value=36 Score=20.79 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=3.9
Q ss_pred cCcccc
Q 043282 112 IRSALK 117 (119)
Q Consensus 112 ~Rsd~e 117 (119)
+|||+|
T Consensus 69 VRSDEE 74 (105)
T d2npta1 69 VRSDEE 74 (105)
T ss_dssp ECSHHH
T ss_pred EccHHH
Confidence 577765
No 7
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=5.72 E-value=1.5e+02 Score=18.60 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=13.7
Q ss_pred ccceeeEEecccchhhH-hHHHHhhhhc
Q 043282 10 IIGSIFLALHDASDVFM-EVAKVFKYFE 36 (119)
Q Consensus 10 riG~lVl~lHD~sDi~L-~~aK~~~y~~ 36 (119)
+=|.+|+ +||....-. .+.+++.+++
T Consensus 142 ~~g~IiL-~Hd~~~~t~~~L~~li~~lk 168 (196)
T d2c1ia1 142 ANGSIVL-MHDIHSPTVNALPRVIEYLK 168 (196)
T ss_dssp CTTEEEE-EETTSHHHHHHHHHHHHHHH
T ss_pred CCCeEEE-EeCCcHHHHHHHHHHHHHHH
Confidence 4477665 599754322 2344445544
No 8
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=5.60 E-value=2e+02 Score=18.23 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=18.7
Q ss_pred ecccchhhHhHHHHhhhhcCch
Q 043282 18 LHDASDVFMEVAKVFKYFENEL 39 (119)
Q Consensus 18 lHD~sDi~L~~aK~~~y~~~~~ 39 (119)
.+|.||..+|..|--.+.+.+.
T Consensus 64 ~~~l~d~Y~e~~k~~~~~~~~~ 85 (218)
T d1ivsa2 64 WSEFCDWYLEAAKPALKAGNAH 85 (218)
T ss_dssp HHTTTTTHHHHHHHHHHTTBHH
T ss_pred hhhhHHHHHHHHhhhccccccc
Confidence 4899999999999988877654
No 9
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=5.36 E-value=1.5e+02 Score=18.95 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=14.5
Q ss_pred cceeeEEecccchhhH-hH-HHHhhhhcCc
Q 043282 11 IGSIFLALHDASDVFM-EV-AKVFKYFENE 38 (119)
Q Consensus 11 iG~lVl~lHD~sDi~L-~~-aK~~~y~~~~ 38 (119)
-|..|+++||...--. ++ -+++.+++.+
T Consensus 170 ~~~~IvL~HD~~~~t~~~~l~~ii~~lk~~ 199 (220)
T d2iw0a1 170 ANSYIVLSHDVHEQTVVSLTQKLIDTLKSK 199 (220)
T ss_dssp GCCEEEEECTTSHHHHHTHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHHHHHHC
Confidence 3455556899754322 22 2455555543
No 10
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=4.80 E-value=2.3e+02 Score=18.34 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=14.0
Q ss_pred HHHHHHHHHh--cCCcccccCccccC
Q 043282 95 ISSMIWRRLK--SGKLREDIRSALKE 118 (119)
Q Consensus 95 Ilki~~~~~~--~g~~~~D~Rsd~e~ 118 (119)
|++.+-+.+. .++..++.++++||
T Consensus 292 I~~~an~ll~~~~~r~~k~~~~~~~~ 317 (318)
T d1pjra1 292 ILQAANEVIEHNVNRKPKRIWTENPE 317 (318)
T ss_dssp HHHHHHHHHTTCSSCCCCCCBCSSCC
T ss_pred HHHHHHHHHHcCcccCCCcccCCCCC
Confidence 4455555554 34457777776665
Done!