BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043283
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
           Erythromycin Biosynthetic Pathway, In Complex With Its
           Activating Partner, Erycii
          Length = 441

 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 72  GMVPYKYLFPRCVAAIHHGG 91
           G VP   L P C A +HHGG
Sbjct: 325 GFVPMHALLPTCAATVHHGG 344


>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
          Length = 415

 Score = 30.4 bits (67), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 52  QRVITQYG---ISIFDGKLFCFS-GMVPYKYLFPRCVAAIHHGGS 92
           +RVI   G   + + D    CF+ G V ++ LF R  A IHHGG+
Sbjct: 267 RRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGA 311


>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
          Length = 459

 Score = 26.2 bits (56), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 91  GSFLIEFQEWFLDIVFNRDSFSLMLP 116
           GS ++EF EW+ DI+   + + +  P
Sbjct: 1   GSHMLEFSEWYSDILEKAEIYDVRYP 26


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,203,412
Number of Sequences: 62578
Number of extensions: 189089
Number of successful extensions: 505
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)