BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043284
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 180 KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239
KVVPN T + KDD E A ++ +M + G+ P L ++ L G+ +GD + A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 240 KRV 242
V
Sbjct: 160 YEV 162
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 180 KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239
KVVPN T + KDD E A + + + G+ P L ++ L G+ +GD + A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 240 KRV 242
V
Sbjct: 160 YEV 162
>pdb|3GSD|A Chain A, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|B Chain B, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|C Chain C, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|D Chain D, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|E Chain E, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|F Chain F, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|G Chain G, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|H Chain H, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|I Chain I, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|J Chain J, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|K Chain K, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|L Chain L, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
Length = 122
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVE 342
D +PN V+Y I C A+NL +L K L L EGK+E
Sbjct: 8 DAXTDPNAVSYSNAIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLE 67
Query: 343 DACELWKRLLRKNCMPDNAISSTI 366
E+ + L + N A+ + I
Sbjct: 68 QEYEV-QLLFKSNTDHQQALLTYI 90
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV 425
+FD E+ P+ + +I G E+ +L AG W+ V G+
Sbjct: 140 VFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGL 183
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV 425
+FD E+ P+ + +I G E+ +L AG W+ V G+
Sbjct: 64 VFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,784,956
Number of Sequences: 62578
Number of extensions: 660469
Number of successful extensions: 1645
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1629
Number of HSP's gapped (non-prelim): 15
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)