Query 043284
Match_columns 527
No_of_seqs 684 out of 2979
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 03:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.9E-63 8.5E-68 501.6 62.8 477 37-520 366-871 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.7E-63 1.5E-67 499.9 61.1 480 39-526 404-910 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-61 2.2E-66 501.1 52.3 468 36-526 217-687 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.4E-59 7.3E-64 471.2 53.2 466 43-526 89-558 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.9E-59 4E-64 473.1 49.3 437 76-526 85-524 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 5.8E-59 1.2E-63 480.7 49.8 465 39-523 119-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-31 2.7E-36 284.2 60.4 465 43-524 433-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-31 6.3E-36 281.4 59.7 446 42-503 364-809 (899)
9 PRK11447 cellulose synthase su 100.0 9.4E-24 2E-28 224.3 58.9 478 40-525 61-700 (1157)
10 PRK11447 cellulose synthase su 100.0 9.4E-24 2E-28 224.3 58.0 471 44-525 31-666 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 5E-25 1.1E-29 199.2 37.5 451 36-506 43-498 (966)
12 PRK09782 bacteriophage N4 rece 99.9 8.9E-22 1.9E-26 200.0 54.4 457 47-526 50-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 7.5E-24 1.6E-28 191.7 34.2 431 80-526 50-486 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 7.8E-22 1.7E-26 197.0 52.2 432 44-496 130-574 (615)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.8E-25 188.3 50.6 427 80-525 129-571 (615)
16 PRK15174 Vi polysaccharide exp 99.9 1.4E-20 3E-25 187.3 49.7 361 53-423 17-381 (656)
17 KOG2002 TPR-containing nuclear 99.9 1E-20 2.3E-25 180.3 42.8 456 38-502 267-754 (1018)
18 PRK10049 pgaA outer membrane p 99.9 5.5E-20 1.2E-24 187.0 49.8 419 39-474 13-470 (765)
19 PRK15174 Vi polysaccharide exp 99.9 3.3E-20 7.2E-25 184.6 47.0 404 88-503 15-431 (656)
20 PRK11788 tetratricopeptide rep 99.9 1.1E-21 2.4E-26 186.4 34.1 308 45-361 39-354 (389)
21 PRK10049 pgaA outer membrane p 99.9 9.5E-20 2.1E-24 185.3 49.8 412 75-500 12-463 (765)
22 PRK09782 bacteriophage N4 rece 99.9 1.1E-18 2.4E-23 177.7 55.0 459 41-525 78-740 (987)
23 PRK11788 tetratricopeptide rep 99.9 3.7E-21 8.1E-26 182.8 35.1 306 123-465 44-354 (389)
24 PRK14574 hmsH outer membrane p 99.9 8.2E-19 1.8E-23 174.9 51.4 447 40-500 33-520 (822)
25 PRK14574 hmsH outer membrane p 99.9 4.8E-18 1E-22 169.5 53.6 439 77-525 33-513 (822)
26 KOG2002 TPR-containing nuclear 99.9 8.1E-19 1.7E-23 167.6 44.0 478 38-525 161-709 (1018)
27 KOG0495 HAT repeat protein [RN 99.9 2.7E-17 5.8E-22 150.6 47.0 460 48-524 413-879 (913)
28 KOG1915 Cell cycle control pro 99.9 3E-16 6.5E-21 138.5 43.5 437 76-526 71-537 (677)
29 KOG2003 TPR repeat-containing 99.8 9.7E-18 2.1E-22 147.0 29.5 453 45-507 205-703 (840)
30 KOG1915 Cell cycle control pro 99.8 4.1E-15 8.8E-20 131.5 45.2 455 53-524 85-584 (677)
31 KOG2076 RNA polymerase III tra 99.8 5.9E-15 1.3E-19 140.6 46.4 368 45-420 143-552 (895)
32 KOG4422 Uncharacterized conser 99.8 9.5E-15 2.1E-19 127.6 38.6 335 184-524 206-589 (625)
33 KOG0495 HAT repeat protein [RN 99.8 2E-13 4.3E-18 125.7 47.9 453 40-509 439-896 (913)
34 KOG4422 Uncharacterized conser 99.8 5.6E-14 1.2E-18 122.8 41.8 431 40-497 115-594 (625)
35 KOG2003 TPR repeat-containing 99.8 1E-15 2.3E-20 134.5 29.6 438 79-524 202-688 (840)
36 KOG0547 Translocase of outer m 99.8 4.2E-15 9.2E-20 131.9 32.3 427 44-494 118-567 (606)
37 KOG2076 RNA polymerase III tra 99.8 1.7E-13 3.7E-18 130.9 44.7 370 81-456 142-553 (895)
38 KOG1155 Anaphase-promoting com 99.8 5.8E-13 1.3E-17 117.8 44.2 333 145-492 160-494 (559)
39 KOG0547 Translocase of outer m 99.7 7.3E-14 1.6E-18 124.2 36.0 425 81-525 118-566 (606)
40 KOG1155 Anaphase-promoting com 99.7 6.4E-13 1.4E-17 117.5 38.2 440 43-507 80-549 (559)
41 PRK10747 putative protoheme IX 99.7 7.4E-14 1.6E-18 131.4 33.7 146 339-491 243-388 (398)
42 TIGR00540 hemY_coli hemY prote 99.7 1E-13 2.3E-18 131.2 34.1 290 197-491 96-397 (409)
43 PRK10747 putative protoheme IX 99.7 1.4E-13 3E-18 129.5 34.7 283 162-457 97-389 (398)
44 TIGR00540 hemY_coli hemY prote 99.7 1E-13 2.3E-18 131.1 34.0 292 161-457 96-398 (409)
45 PF13429 TPR_15: Tetratricopep 99.7 6.3E-17 1.4E-21 145.5 11.4 263 46-318 13-276 (280)
46 KOG1173 Anaphase-promoting com 99.7 6.9E-13 1.5E-17 120.4 36.0 455 34-506 9-530 (611)
47 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 3.9E-21 142.6 12.8 261 225-491 13-275 (280)
48 KOG1173 Anaphase-promoting com 99.7 1.1E-12 2.4E-17 119.1 35.4 423 39-474 47-532 (611)
49 KOG2047 mRNA splicing factor [ 99.7 3.2E-11 6.9E-16 111.2 44.7 468 41-524 102-650 (835)
50 COG2956 Predicted N-acetylgluc 99.7 3.2E-13 6.9E-18 114.0 29.4 290 54-352 48-345 (389)
51 COG3071 HemY Uncharacterized e 99.6 3.1E-12 6.8E-17 111.5 32.3 286 162-457 97-389 (400)
52 COG2956 Predicted N-acetylgluc 99.6 1.6E-12 3.4E-17 109.9 29.3 226 226-456 113-345 (389)
53 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.4E-18 128.1 24.3 202 289-495 420-622 (638)
54 KOG3785 Uncharacterized conser 99.6 4.3E-11 9.4E-16 102.5 37.7 436 48-510 29-506 (557)
55 KOG1156 N-terminal acetyltrans 99.6 1E-10 2.2E-15 108.3 41.5 433 44-495 11-470 (700)
56 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.2E-18 125.8 24.3 283 164-459 334-621 (638)
57 KOG2047 mRNA splicing factor [ 99.6 5.9E-10 1.3E-14 103.1 43.9 432 79-522 103-612 (835)
58 KOG1156 N-terminal acetyltrans 99.6 2.8E-10 6.1E-15 105.4 40.6 437 38-490 38-508 (700)
59 KOG4162 Predicted calmodulin-b 99.6 2.8E-11 6.1E-16 114.1 34.2 444 42-495 285-785 (799)
60 COG3071 HemY Uncharacterized e 99.6 6.1E-11 1.3E-15 103.6 33.0 288 197-493 96-390 (400)
61 KOG3785 Uncharacterized conser 99.6 4.1E-11 8.8E-16 102.7 30.9 435 47-523 63-550 (557)
62 KOG2376 Signal recognition par 99.6 5.3E-10 1.1E-14 102.5 39.0 451 46-522 17-517 (652)
63 PF12569 NARP1: NMDA receptor- 99.5 1.3E-09 2.9E-14 103.6 40.2 293 48-353 11-333 (517)
64 KOG1174 Anaphase-promoting com 99.5 3.5E-09 7.5E-14 93.0 39.1 300 198-505 209-512 (564)
65 PRK12370 invasion protein regu 99.5 8.8E-12 1.9E-16 122.7 26.5 216 93-318 276-501 (553)
66 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.4E-16 109.0 24.5 200 41-248 31-231 (234)
67 TIGR02521 type_IV_pilW type IV 99.5 1.6E-11 3.4E-16 108.0 25.2 200 78-282 31-230 (234)
68 PRK12370 invasion protein regu 99.5 4.5E-11 9.8E-16 117.7 29.0 245 270-524 276-534 (553)
69 KOG1174 Anaphase-promoting com 99.5 5.9E-09 1.3E-13 91.6 37.5 402 42-464 98-504 (564)
70 KOG1129 TPR repeat-containing 99.5 1.2E-11 2.5E-16 104.8 20.0 233 258-495 226-460 (478)
71 KOG1129 TPR repeat-containing 99.5 1.2E-11 2.7E-16 104.7 18.9 227 224-457 227-457 (478)
72 KOG4162 Predicted calmodulin-b 99.5 7.3E-09 1.6E-13 98.2 38.5 406 112-526 321-784 (799)
73 KOG0548 Molecular co-chaperone 99.4 5.2E-09 1.1E-13 95.3 34.4 401 45-468 6-463 (539)
74 KOG2376 Signal recognition par 99.4 1.4E-08 3.1E-13 93.3 36.7 422 78-526 12-488 (652)
75 KOG4318 Bicoid mRNA stability 99.4 2.3E-09 5E-14 102.9 32.5 243 38-305 22-286 (1088)
76 PF12569 NARP1: NMDA receptor- 99.4 1.8E-09 4E-14 102.7 31.6 260 116-386 6-288 (517)
77 PRK11189 lipoprotein NlpI; Pro 99.4 7E-10 1.5E-14 100.0 26.3 220 55-285 40-266 (296)
78 COG3063 PilF Tfp pilus assembl 99.4 8.2E-10 1.8E-14 89.4 23.5 196 45-248 39-235 (250)
79 KOG1840 Kinesin light chain [C 99.4 7.8E-10 1.7E-14 103.9 26.1 129 363-491 328-477 (508)
80 COG3063 PilF Tfp pilus assembl 99.4 7.7E-10 1.7E-14 89.6 22.4 209 80-295 37-245 (250)
81 PRK11189 lipoprotein NlpI; Pro 99.3 6.4E-10 1.4E-14 100.3 23.9 198 42-252 65-268 (296)
82 KOG1840 Kinesin light chain [C 99.3 1E-10 2.2E-15 109.7 18.6 97 221-317 368-477 (508)
83 KOG1127 TPR repeat-containing 99.3 6.8E-09 1.5E-13 101.0 30.9 163 43-212 494-657 (1238)
84 KOG4318 Bicoid mRNA stability 99.3 2.3E-10 5.1E-15 109.5 19.8 274 135-444 11-286 (1088)
85 cd05804 StaR_like StaR_like; a 99.3 2.1E-08 4.6E-13 94.1 32.6 199 44-248 9-214 (355)
86 KOG4340 Uncharacterized conser 99.3 1.3E-08 2.7E-13 85.7 26.5 195 44-252 13-210 (459)
87 KOG0548 Molecular co-chaperone 99.3 8.1E-08 1.8E-12 87.7 33.5 402 85-506 9-468 (539)
88 KOG1125 TPR repeat-containing 99.3 1.3E-09 2.8E-14 99.9 21.2 230 42-282 286-525 (579)
89 KOG4340 Uncharacterized conser 99.3 3.5E-08 7.5E-13 83.1 27.8 402 80-502 12-451 (459)
90 KOG0624 dsRNA-activated protei 99.3 1.7E-07 3.6E-12 80.7 32.1 317 77-423 37-370 (504)
91 KOG1127 TPR repeat-containing 99.3 9.7E-08 2.1E-12 93.3 33.7 457 54-524 471-995 (1238)
92 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6.1E-16 76.0 6.6 49 392-440 1-49 (50)
93 PF13041 PPR_2: PPR repeat fam 99.2 2E-11 4.3E-16 76.7 5.5 49 183-231 1-49 (50)
94 KOG0624 dsRNA-activated protei 99.2 8.2E-08 1.8E-12 82.5 28.6 199 42-249 39-252 (504)
95 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.9E-12 87.9 34.7 66 78-143 6-72 (355)
96 PRK04841 transcriptional regul 99.2 3.8E-07 8.3E-12 97.0 39.6 376 80-458 343-760 (903)
97 KOG3616 Selective LIM binding 99.1 8.2E-07 1.8E-11 84.2 33.2 219 229-489 715-933 (1636)
98 PF04733 Coatomer_E: Coatomer 99.1 5.2E-09 1.1E-13 92.8 17.8 151 334-494 111-266 (290)
99 KOG3617 WD40 and TPR repeat-co 99.1 8.8E-07 1.9E-11 85.0 31.8 317 52-421 739-1107(1416)
100 PRK04841 transcriptional regul 99.1 1.8E-06 3.9E-11 92.0 38.8 339 157-496 382-763 (903)
101 KOG3616 Selective LIM binding 99.1 1.2E-06 2.6E-11 83.1 31.3 389 45-497 619-1028(1636)
102 KOG1125 TPR repeat-containing 99.1 5E-08 1.1E-12 89.8 21.4 252 229-485 294-563 (579)
103 TIGR03302 OM_YfiO outer membra 99.0 3.3E-08 7.2E-13 86.6 18.9 192 38-249 30-232 (235)
104 PF04733 Coatomer_E: Coatomer 99.0 4.5E-08 9.8E-13 86.9 19.6 27 256-282 132-158 (290)
105 KOG1070 rRNA processing protei 99.0 1.7E-07 3.6E-12 94.8 25.1 216 63-288 1446-1667(1710)
106 KOG0985 Vesicle coat protein c 99.0 2.4E-05 5.2E-10 77.2 37.2 266 36-349 979-1244(1666)
107 KOG0985 Vesicle coat protein c 99.0 1.5E-05 3.3E-10 78.6 35.3 301 113-456 983-1306(1666)
108 KOG1914 mRNA cleavage and poly 99.0 3E-05 6.4E-10 71.4 41.4 188 306-495 309-503 (656)
109 PLN02789 farnesyltranstransfer 99.0 8.7E-07 1.9E-11 79.8 25.0 212 46-267 42-267 (320)
110 KOG1070 rRNA processing protei 98.9 1E-06 2.2E-11 89.4 27.0 230 219-451 1457-1693(1710)
111 KOG1914 mRNA cleavage and poly 98.9 3.7E-05 8E-10 70.8 35.4 409 40-457 19-500 (656)
112 KOG3617 WD40 and TPR repeat-co 98.9 2E-05 4.4E-10 76.0 33.8 52 444-495 1306-1361(1416)
113 TIGR03302 OM_YfiO outer membra 98.9 3.8E-07 8.2E-12 79.9 19.5 189 74-284 29-232 (235)
114 PLN02789 farnesyltranstransfer 98.9 8.2E-06 1.8E-10 73.6 28.0 180 223-406 40-229 (320)
115 KOG1128 Uncharacterized conser 98.9 1.1E-06 2.4E-11 83.4 22.8 218 220-457 398-615 (777)
116 PRK10370 formate-dependent nit 98.8 1.7E-06 3.6E-11 72.6 21.0 159 332-504 23-184 (198)
117 KOG1128 Uncharacterized conser 98.8 3E-07 6.5E-12 87.1 17.9 218 256-494 399-617 (777)
118 KOG3081 Vesicle coat complex C 98.8 7.9E-06 1.7E-10 68.3 23.1 150 193-353 116-270 (299)
119 PRK10370 formate-dependent nit 98.8 4.2E-07 9.1E-12 76.2 15.4 158 47-224 22-182 (198)
120 PRK15359 type III secretion sy 98.8 2.5E-07 5.4E-12 73.3 13.0 93 46-143 29-121 (144)
121 KOG2053 Mitochondrial inherita 98.8 0.00027 5.9E-09 69.3 43.4 221 52-285 20-256 (932)
122 KOG3081 Vesicle coat complex C 98.8 8E-06 1.7E-10 68.2 21.8 120 334-457 146-270 (299)
123 COG5010 TadD Flp pilus assembl 98.8 2.7E-06 5.8E-11 71.1 19.0 164 77-247 66-229 (257)
124 PRK15179 Vi polysaccharide bio 98.7 9.4E-06 2E-10 80.9 26.3 136 321-458 82-217 (694)
125 PRK14720 transcript cleavage f 98.7 4.7E-06 1E-10 83.8 24.0 156 36-214 26-198 (906)
126 PRK15179 Vi polysaccharide bio 98.7 1.3E-06 2.8E-11 86.9 20.0 150 72-227 80-229 (694)
127 COG5010 TadD Flp pilus assembl 98.7 5.5E-06 1.2E-10 69.2 20.2 158 329-489 70-227 (257)
128 PRK14720 transcript cleavage f 98.7 1.5E-05 3.2E-10 80.4 27.0 238 77-371 30-268 (906)
129 KOG3060 Uncharacterized conser 98.7 1.2E-05 2.5E-10 66.8 20.5 199 302-504 24-231 (289)
130 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 69.6 14.6 109 61-178 13-121 (144)
131 KOG3060 Uncharacterized conser 98.7 3.9E-05 8.4E-10 63.8 23.0 188 267-458 24-220 (289)
132 COG4783 Putative Zn-dependent 98.6 2.4E-05 5.3E-10 71.3 22.7 155 332-506 313-467 (484)
133 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 53.5 3.9 32 424-455 2-33 (34)
134 TIGR02552 LcrH_SycD type III s 98.6 3.8E-06 8.2E-11 66.3 14.2 109 64-178 6-114 (135)
135 COG4783 Putative Zn-dependent 98.5 9E-05 1.9E-09 67.8 23.8 85 192-279 347-432 (484)
136 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 52.6 4.0 32 180-211 2-33 (34)
137 TIGR02552 LcrH_SycD type III s 98.5 7.4E-06 1.6E-10 64.6 14.6 113 383-497 6-118 (135)
138 TIGR02795 tol_pal_ybgF tol-pal 98.5 5.2E-06 1.1E-10 63.9 12.6 102 43-144 4-106 (119)
139 PF09976 TPR_21: Tetratricopep 98.5 5.6E-06 1.2E-10 66.0 12.8 118 90-210 23-143 (145)
140 PF09976 TPR_21: Tetratricopep 98.4 1.7E-05 3.7E-10 63.2 14.5 115 127-245 24-143 (145)
141 KOG2053 Mitochondrial inherita 98.4 0.0028 6.1E-08 62.6 43.6 224 88-322 19-258 (932)
142 PRK10866 outer membrane biogen 98.4 9.3E-05 2E-09 64.3 19.2 73 42-114 33-105 (243)
143 PF07079 DUF1347: Protein of u 98.4 0.002 4.4E-08 58.6 41.3 438 50-506 15-533 (549)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.2E-05 6.9E-10 71.3 15.5 127 113-247 168-295 (395)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.9E-05 1.1E-09 70.1 16.4 123 82-212 173-295 (395)
146 PRK15363 pathogenicity island 98.2 5.2E-05 1.1E-09 59.1 12.8 101 77-180 34-134 (157)
147 PRK15363 pathogenicity island 98.2 3.1E-05 6.8E-10 60.3 11.1 96 43-143 37-132 (157)
148 PLN03088 SGT1, suppressor of 98.2 5.1E-05 1.1E-09 70.3 14.6 105 44-154 5-109 (356)
149 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.7E-05 1.7E-09 57.2 13.5 103 396-500 4-112 (119)
150 PRK02603 photosystem I assembl 98.2 3.1E-05 6.6E-10 63.9 11.6 91 40-132 34-124 (172)
151 KOG0550 Molecular chaperone (D 98.2 0.0034 7.4E-08 56.4 24.4 86 300-386 259-347 (486)
152 KOG2041 WD40 repeat protein [G 98.1 0.0098 2.1E-07 57.2 28.8 219 55-315 677-903 (1189)
153 KOG0550 Molecular chaperone (D 98.1 0.0048 1E-07 55.6 24.0 283 44-355 52-351 (486)
154 COG4700 Uncharacterized protei 98.1 0.00023 5.1E-09 56.2 14.1 143 55-209 74-217 (251)
155 PF14938 SNAP: Soluble NSF att 98.1 0.00013 2.8E-09 65.5 14.9 170 83-284 40-225 (282)
156 PF12895 Apc3: Anaphase-promot 98.1 4.8E-06 1E-10 59.1 4.3 82 54-139 2-83 (84)
157 PF12895 Apc3: Anaphase-promot 98.1 7E-06 1.5E-10 58.3 4.8 82 91-174 2-83 (84)
158 cd00189 TPR Tetratricopeptide 98.1 7.1E-05 1.5E-09 54.7 10.6 94 44-142 3-96 (100)
159 PRK10803 tol-pal system protei 98.0 8.4E-05 1.8E-09 65.0 12.2 100 44-143 146-246 (263)
160 PRK10866 outer membrane biogen 98.0 0.0014 3.1E-08 57.0 19.7 68 77-144 31-99 (243)
161 CHL00033 ycf3 photosystem I as 98.0 9.2E-05 2E-09 60.8 11.9 95 78-173 35-137 (168)
162 PF12688 TPR_5: Tetratrico pep 98.0 0.00026 5.6E-09 53.3 12.5 99 44-142 4-103 (120)
163 KOG2041 WD40 repeat protein [G 98.0 0.017 3.8E-07 55.6 26.9 374 35-457 686-1085(1189)
164 PF05843 Suf: Suppressor of fo 98.0 0.00031 6.7E-09 62.8 15.0 142 327-472 3-148 (280)
165 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.6E-10 45.3 4.5 33 396-428 2-34 (35)
166 TIGR00756 PPR pentatricopeptid 98.0 1.7E-05 3.6E-10 45.3 4.5 33 431-463 2-34 (35)
167 KOG0553 TPR repeat-containing 98.0 0.00016 3.4E-09 62.1 11.8 99 47-152 87-185 (304)
168 PF13432 TPR_16: Tetratricopep 98.0 2.5E-05 5.3E-10 52.3 5.7 61 46-109 2-62 (65)
169 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.5E-09 64.6 12.5 131 80-213 3-135 (280)
170 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 44.7 4.2 32 431-462 3-34 (34)
171 PRK10153 DNA-binding transcrip 97.9 0.0016 3.5E-08 63.3 19.8 141 356-498 333-487 (517)
172 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.6E-09 52.6 10.6 94 81-177 3-96 (100)
173 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.7E-10 44.4 4.4 33 395-427 2-34 (34)
174 PF13525 YfiO: Outer membrane 97.9 0.00065 1.4E-08 57.5 15.2 69 44-112 8-76 (203)
175 KOG0553 TPR repeat-containing 97.9 0.00016 3.5E-09 62.0 11.0 96 370-469 91-187 (304)
176 PLN03088 SGT1, suppressor of 97.9 0.00034 7.3E-09 64.9 14.2 93 83-178 7-99 (356)
177 PF10037 MRP-S27: Mitochondria 97.9 0.00027 5.9E-09 65.6 13.2 124 145-268 62-186 (429)
178 PRK02603 photosystem I assembl 97.9 0.00056 1.2E-08 56.3 14.0 93 77-170 34-127 (172)
179 COG4700 Uncharacterized protei 97.9 0.0013 2.9E-08 52.1 14.7 132 113-246 88-219 (251)
180 PRK10153 DNA-binding transcrip 97.9 0.00046 1E-08 66.9 14.8 118 56-178 357-482 (517)
181 PF10037 MRP-S27: Mitochondria 97.9 0.00031 6.7E-09 65.2 12.9 123 320-442 61-186 (429)
182 COG4235 Cytochrome c biogenesi 97.8 0.0012 2.6E-08 57.2 15.2 99 113-214 155-256 (287)
183 PF14938 SNAP: Soluble NSF att 97.8 0.0033 7.1E-08 56.5 18.9 114 191-319 100-225 (282)
184 COG4235 Cytochrome c biogenesi 97.8 0.0013 2.8E-08 57.0 15.1 120 384-506 146-268 (287)
185 COG3898 Uncharacterized membra 97.8 0.024 5.2E-07 50.9 29.2 280 90-386 96-389 (531)
186 CHL00033 ycf3 photosystem I as 97.8 0.001 2.2E-08 54.6 13.7 63 45-107 39-101 (168)
187 PF13525 YfiO: Outer membrane 97.8 0.0023 4.9E-08 54.3 16.1 68 77-144 4-72 (203)
188 PF12688 TPR_5: Tetratrico pep 97.8 0.0015 3.3E-08 49.2 13.2 94 119-212 6-102 (120)
189 PF08579 RPM2: Mitochondrial r 97.7 0.00059 1.3E-08 49.3 9.8 72 229-300 34-114 (120)
190 PF13414 TPR_11: TPR repeat; P 97.7 4.5E-05 9.7E-10 51.7 3.6 61 43-106 5-66 (69)
191 PF08579 RPM2: Mitochondrial r 97.7 0.00056 1.2E-08 49.4 9.1 79 189-267 29-116 (120)
192 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00078 1.7E-08 62.1 12.3 71 37-107 71-141 (453)
193 COG1729 Uncharacterized protei 97.7 0.0021 4.6E-08 54.9 13.9 100 44-143 144-244 (262)
194 KOG1130 Predicted G-alpha GTPa 97.6 0.0004 8.7E-09 62.0 9.3 132 222-353 197-343 (639)
195 PF14559 TPR_19: Tetratricopep 97.6 0.00035 7.6E-09 47.1 7.3 51 126-177 3-53 (68)
196 PF13371 TPR_9: Tetratricopept 97.6 0.00021 4.6E-09 49.0 6.2 60 48-110 2-61 (73)
197 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 40.9 3.2 29 187-215 2-30 (31)
198 PF01535 PPR: PPR repeat; Int 97.6 9.8E-05 2.1E-09 40.6 3.4 29 431-459 2-30 (31)
199 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.059 1.3E-06 49.4 33.6 125 61-193 29-160 (660)
200 PF13414 TPR_11: TPR repeat; P 97.6 0.00035 7.6E-09 47.3 6.7 63 429-493 3-67 (69)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.064 1.4E-06 49.2 34.6 403 40-457 41-530 (660)
202 COG3898 Uncharacterized membra 97.6 0.057 1.2E-06 48.6 31.1 281 162-458 97-392 (531)
203 PF13432 TPR_16: Tetratricopep 97.6 0.00052 1.1E-08 45.8 7.2 55 402-457 5-59 (65)
204 PF04840 Vps16_C: Vps16, C-ter 97.5 0.067 1.4E-06 48.6 28.7 137 362-522 179-316 (319)
205 KOG1258 mRNA processing protei 97.5 0.094 2E-06 50.2 29.8 385 44-443 48-489 (577)
206 COG4105 ComL DNA uptake lipopr 97.5 0.041 8.9E-07 46.8 19.2 71 44-114 37-107 (254)
207 KOG1130 Predicted G-alpha GTPa 97.5 0.001 2.2E-08 59.6 10.2 271 48-318 24-343 (639)
208 PF06239 ECSIT: Evolutionarily 97.5 0.002 4.4E-08 52.9 11.1 48 184-231 46-98 (228)
209 PF14559 TPR_19: Tetratricopep 97.5 0.00037 8E-09 47.0 6.0 50 407-457 4-53 (68)
210 PRK10803 tol-pal system protei 97.5 0.0039 8.5E-08 54.7 13.2 98 396-497 145-250 (263)
211 KOG2796 Uncharacterized conser 97.4 0.056 1.2E-06 45.8 19.8 139 292-432 179-322 (366)
212 PF13512 TPR_18: Tetratricopep 97.4 0.0054 1.2E-07 47.2 11.2 82 42-124 11-92 (142)
213 KOG2280 Vacuolar assembly/sort 97.3 0.2 4.4E-06 49.2 32.7 348 120-512 443-813 (829)
214 PF07079 DUF1347: Protein of u 97.3 0.14 3E-06 47.2 37.1 377 80-469 79-530 (549)
215 COG4105 ComL DNA uptake lipopr 97.3 0.088 1.9E-06 44.9 18.5 172 77-249 33-233 (254)
216 PRK15331 chaperone protein Sic 97.2 0.011 2.3E-07 46.7 12.0 87 88-177 47-133 (165)
217 PF04840 Vps16_C: Vps16, C-ter 97.2 0.15 3.2E-06 46.3 30.4 104 259-382 181-284 (319)
218 KOG1258 mRNA processing protei 97.2 0.22 4.7E-06 47.8 32.8 135 77-214 44-180 (577)
219 PF13512 TPR_18: Tetratricopep 97.2 0.013 2.9E-07 45.0 11.7 87 77-163 9-96 (142)
220 PF03704 BTAD: Bacterial trans 97.2 0.013 2.7E-07 46.8 12.4 122 49-188 14-139 (146)
221 PRK15331 chaperone protein Sic 97.2 0.042 9E-07 43.5 14.5 87 370-457 47-133 (165)
222 PF06239 ECSIT: Evolutionarily 97.2 0.01 2.2E-07 48.9 11.6 86 393-478 46-152 (228)
223 KOG2796 Uncharacterized conser 97.1 0.13 2.9E-06 43.7 20.0 177 53-249 134-315 (366)
224 KOG0543 FKBP-type peptidyl-pro 97.1 0.01 2.2E-07 53.7 12.2 141 45-213 212-354 (397)
225 PF13281 DUF4071: Domain of un 97.1 0.19 4.2E-06 46.1 20.0 100 113-213 140-254 (374)
226 PF04184 ST7: ST7 protein; In 97.0 0.15 3.2E-06 47.8 18.8 79 151-229 261-340 (539)
227 PF13281 DUF4071: Domain of un 97.0 0.18 3.9E-06 46.3 19.1 78 293-370 144-227 (374)
228 KOG1585 Protein required for f 97.0 0.087 1.9E-06 44.2 15.3 27 42-68 32-58 (308)
229 PF13371 TPR_9: Tetratricopept 97.0 0.0062 1.3E-07 41.6 7.8 54 403-457 4-57 (73)
230 KOG2610 Uncharacterized conser 97.0 0.04 8.7E-07 48.4 13.8 154 88-245 113-272 (491)
231 PF13424 TPR_12: Tetratricopep 96.9 0.0019 4.2E-08 44.9 4.7 64 43-106 7-74 (78)
232 PF13424 TPR_12: Tetratricopep 96.9 0.0029 6.3E-08 44.0 5.6 63 79-141 6-73 (78)
233 COG1729 Uncharacterized protei 96.9 0.032 7E-07 47.9 12.7 99 115-214 143-244 (262)
234 KOG1585 Protein required for f 96.9 0.14 3.1E-06 43.0 15.8 213 72-313 25-250 (308)
235 KOG0890 Protein kinase of the 96.8 0.89 1.9E-05 51.2 25.4 153 190-349 1388-1542(2382)
236 KOG4555 TPR repeat-containing 96.8 0.024 5.3E-07 42.3 9.6 97 45-144 47-145 (175)
237 PF03704 BTAD: Bacterial trans 96.8 0.01 2.2E-07 47.4 8.4 68 398-466 66-138 (146)
238 COG4785 NlpI Lipoprotein NlpI, 96.8 0.18 3.9E-06 41.6 15.1 180 94-285 81-267 (297)
239 KOG0543 FKBP-type peptidyl-pro 96.7 0.045 9.7E-07 49.7 13.0 73 432-505 260-332 (397)
240 KOG2280 Vacuolar assembly/sort 96.7 0.69 1.5E-05 45.7 27.1 334 84-454 443-795 (829)
241 KOG1538 Uncharacterized conser 96.7 0.2 4.2E-06 48.4 17.2 89 325-423 747-846 (1081)
242 PRK11906 transcriptional regul 96.7 0.13 2.9E-06 48.0 15.9 148 56-210 273-432 (458)
243 PF04053 Coatomer_WDAD: Coatom 96.7 0.098 2.1E-06 49.9 15.7 158 87-280 270-427 (443)
244 PF13428 TPR_14: Tetratricopep 96.7 0.0052 1.1E-07 36.9 4.8 40 466-505 3-42 (44)
245 PF08631 SPO22: Meiosis protei 96.6 0.49 1.1E-05 42.4 22.5 127 51-178 3-150 (278)
246 KOG1538 Uncharacterized conser 96.6 0.34 7.3E-06 46.9 18.0 251 185-457 556-845 (1081)
247 COG3118 Thioredoxin domain-con 96.5 0.21 4.5E-06 43.6 15.1 148 85-238 141-290 (304)
248 PF13428 TPR_14: Tetratricopep 96.5 0.0046 1E-07 37.1 3.9 39 44-85 4-42 (44)
249 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.065 1.4E-06 49.9 12.6 66 358-423 73-141 (453)
250 KOG2114 Vacuolar assembly/sort 96.5 1.2 2.5E-05 44.8 21.6 47 434-484 710-756 (933)
251 PF10300 DUF3808: Protein of u 96.4 0.25 5.4E-06 47.9 17.0 118 374-492 247-375 (468)
252 KOG1941 Acetylcholine receptor 96.4 0.11 2.4E-06 46.3 12.9 235 47-282 12-273 (518)
253 PF12921 ATP13: Mitochondrial 96.4 0.065 1.4E-06 40.9 10.0 50 145-194 48-97 (126)
254 PF12921 ATP13: Mitochondrial 96.3 0.094 2E-06 40.1 10.6 48 391-438 49-97 (126)
255 PF09205 DUF1955: Domain of un 96.3 0.32 6.9E-06 36.7 16.2 140 124-286 12-151 (161)
256 PF10300 DUF3808: Protein of u 96.2 0.42 9E-06 46.4 17.2 179 133-318 176-375 (468)
257 COG3118 Thioredoxin domain-con 96.2 0.81 1.8E-05 40.1 18.0 120 159-282 144-263 (304)
258 PF09205 DUF1955: Domain of un 96.1 0.39 8.5E-06 36.2 14.2 58 401-459 93-150 (161)
259 KOG4555 TPR repeat-containing 96.1 0.13 2.9E-06 38.5 10.1 91 369-459 52-145 (175)
260 KOG2114 Vacuolar assembly/sort 96.0 2 4.4E-05 43.3 28.7 183 40-245 333-515 (933)
261 PRK11906 transcriptional regul 95.9 0.74 1.6E-05 43.3 16.4 148 340-492 273-435 (458)
262 PF10345 Cohesin_load: Cohesin 95.9 2.3 4.9E-05 43.3 39.7 188 58-247 38-252 (608)
263 smart00299 CLH Clathrin heavy 95.9 0.61 1.3E-05 36.7 15.1 122 365-507 12-134 (140)
264 KOG2396 HAT (Half-A-TPR) repea 95.9 1.7 3.6E-05 41.1 37.9 98 426-524 456-558 (568)
265 PF04053 Coatomer_WDAD: Coatom 95.8 0.63 1.4E-05 44.6 16.0 132 291-454 296-427 (443)
266 KOG1920 IkappaB kinase complex 95.7 3.4 7.3E-05 43.5 27.2 126 46-176 682-819 (1265)
267 KOG1941 Acetylcholine receptor 95.7 0.36 7.8E-06 43.2 12.7 24 329-352 250-273 (518)
268 COG0457 NrfG FOG: TPR repeat [ 95.7 1.3 2.8E-05 38.4 29.2 96 256-352 60-157 (291)
269 COG4649 Uncharacterized protei 95.6 0.89 1.9E-05 36.3 13.9 129 49-178 66-196 (221)
270 KOG2610 Uncharacterized conser 95.6 1.5 3.4E-05 39.0 16.6 116 268-386 116-235 (491)
271 COG0457 NrfG FOG: TPR repeat [ 95.4 1.6 3.4E-05 37.8 30.0 225 268-496 36-268 (291)
272 PF04184 ST7: ST7 protein; In 95.3 2.1 4.5E-05 40.6 16.8 58 330-387 264-322 (539)
273 KOG2066 Vacuolar assembly/sort 95.3 3.5 7.6E-05 41.3 28.1 29 475-508 672-700 (846)
274 PF07163 Pex26: Pex26 protein; 95.2 0.67 1.4E-05 40.1 12.3 131 41-172 35-181 (309)
275 smart00299 CLH Clathrin heavy 94.9 1.4 3.1E-05 34.6 15.7 129 41-196 7-136 (140)
276 COG3629 DnrI DNA-binding trans 94.9 0.34 7.4E-06 42.6 10.1 78 116-194 155-236 (280)
277 KOG3941 Intermediate in Toll s 94.9 0.31 6.7E-06 42.0 9.5 71 199-269 86-172 (406)
278 COG4649 Uncharacterized protei 94.8 1.7 3.6E-05 34.8 13.4 133 114-250 59-197 (221)
279 PF08631 SPO22: Meiosis protei 94.8 3 6.4E-05 37.5 25.3 20 472-491 254-273 (278)
280 PF13431 TPR_17: Tetratricopep 94.7 0.04 8.7E-07 30.7 2.7 32 64-98 2-33 (34)
281 PF02284 COX5A: Cytochrome c o 94.5 0.92 2E-05 32.5 9.5 64 446-509 27-90 (108)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 1.3 2.8E-05 31.4 9.8 66 444-509 22-87 (103)
283 PF10602 RPN7: 26S proteasome 94.2 0.97 2.1E-05 37.2 10.9 64 79-142 37-101 (177)
284 COG2976 Uncharacterized protei 94.2 0.55 1.2E-05 38.3 8.9 98 80-179 91-189 (207)
285 COG3629 DnrI DNA-binding trans 94.1 0.67 1.4E-05 40.8 10.2 77 362-438 155-236 (280)
286 KOG3941 Intermediate in Toll s 94.1 0.54 1.2E-05 40.6 9.2 88 218-305 65-173 (406)
287 KOG4234 TPR repeat-containing 94.1 0.87 1.9E-05 37.3 9.8 93 85-178 102-197 (271)
288 KOG4234 TPR repeat-containing 94.0 2.3 5E-05 34.9 12.1 90 405-497 106-201 (271)
289 KOG4570 Uncharacterized conser 94.0 0.41 8.9E-06 42.0 8.4 102 355-458 59-164 (418)
290 COG2909 MalT ATP-dependent tra 93.9 8.9 0.00019 39.4 24.7 297 42-350 348-684 (894)
291 PF10602 RPN7: 26S proteasome 93.8 0.65 1.4E-05 38.2 9.1 100 42-141 37-140 (177)
292 COG4785 NlpI Lipoprotein NlpI, 93.7 3.6 7.7E-05 34.4 15.6 29 149-177 99-127 (297)
293 PF13929 mRNA_stabil: mRNA sta 93.7 4.5 9.9E-05 35.6 14.2 149 81-232 134-290 (292)
294 PF00515 TPR_1: Tetratricopept 93.5 0.14 3E-06 28.4 3.4 30 44-73 4-33 (34)
295 KOG2063 Vacuolar assembly/sort 93.5 11 0.00024 39.3 21.5 64 44-107 310-375 (877)
296 PF02259 FAT: FAT domain; Int 93.5 6.7 0.00014 36.7 23.1 64 359-422 145-212 (352)
297 PF07719 TPR_2: Tetratricopept 93.4 0.14 3.1E-06 28.2 3.4 30 44-73 4-33 (34)
298 PF13170 DUF4003: Protein of u 93.3 5.9 0.00013 35.7 18.4 130 130-261 78-223 (297)
299 PF08424 NRDE-2: NRDE-2, neces 93.3 4.9 0.00011 37.0 15.0 90 64-159 8-109 (321)
300 PF07719 TPR_2: Tetratricopept 93.3 0.25 5.4E-06 27.2 4.3 28 467-494 4-31 (34)
301 PF09613 HrpB1_HrpK: Bacterial 93.3 3.4 7.4E-05 32.8 13.8 53 371-423 21-73 (160)
302 PF13176 TPR_7: Tetratricopept 93.3 0.22 4.8E-06 28.1 4.0 23 432-454 2-24 (36)
303 PF13176 TPR_7: Tetratricopept 93.2 0.23 5E-06 28.0 4.0 26 466-491 1-26 (36)
304 PRK15180 Vi polysaccharide bio 92.9 0.53 1.2E-05 43.8 7.9 126 332-459 296-421 (831)
305 COG2976 Uncharacterized protei 92.8 4.7 0.0001 33.2 13.8 89 368-458 97-188 (207)
306 KOG4648 Uncharacterized conser 92.6 0.3 6.6E-06 43.3 5.7 95 401-498 104-199 (536)
307 PF07035 Mic1: Colon cancer-as 92.6 4.6 0.0001 32.6 15.3 38 135-172 15-52 (167)
308 KOG0276 Vesicle coat complex C 92.5 1.4 3.1E-05 42.5 10.2 101 158-280 646-746 (794)
309 KOG1550 Extracellular protein 92.3 13 0.00029 37.2 25.5 16 340-355 343-358 (552)
310 PF09613 HrpB1_HrpK: Bacterial 92.2 5 0.00011 32.0 13.5 19 265-283 54-72 (160)
311 PF13431 TPR_17: Tetratricopep 92.1 0.17 3.7E-06 28.1 2.5 24 390-413 9-32 (34)
312 KOG1920 IkappaB kinase complex 92.0 19 0.00042 38.4 31.1 106 367-491 946-1053(1265)
313 COG1747 Uncharacterized N-term 91.9 12 0.00026 35.8 21.0 178 183-368 64-247 (711)
314 KOG1550 Extracellular protein 91.7 16 0.00034 36.7 23.7 145 165-320 228-394 (552)
315 KOG4648 Uncharacterized conser 91.7 1.2 2.6E-05 39.7 8.2 94 45-143 101-194 (536)
316 PF00515 TPR_1: Tetratricopept 91.6 0.41 8.8E-06 26.4 3.7 26 432-457 4-29 (34)
317 PF02284 COX5A: Cytochrome c o 91.4 3.7 8E-05 29.6 8.8 60 343-402 28-87 (108)
318 KOG2300 Uncharacterized conser 90.9 15 0.00032 35.0 36.3 415 46-466 12-523 (629)
319 KOG1464 COP9 signalosome, subu 90.9 10 0.00022 33.0 19.6 185 92-276 41-252 (440)
320 PRK15180 Vi polysaccharide bio 90.9 15 0.00032 34.9 28.9 122 51-178 299-420 (831)
321 PF11207 DUF2989: Protein of u 90.6 3 6.6E-05 34.5 9.0 79 88-169 117-198 (203)
322 PF08424 NRDE-2: NRDE-2, neces 90.5 14 0.00031 34.0 16.2 78 378-456 49-129 (321)
323 PF07035 Mic1: Colon cancer-as 90.5 8.1 0.00018 31.2 14.5 101 206-316 15-115 (167)
324 PF13174 TPR_6: Tetratricopept 90.4 0.34 7.5E-06 26.4 2.7 28 45-72 4-31 (33)
325 PF02259 FAT: FAT domain; Int 90.2 16 0.00034 34.1 22.9 65 184-248 145-212 (352)
326 PF04097 Nic96: Nup93/Nic96; 89.9 25 0.00053 35.9 22.1 89 262-355 265-357 (613)
327 PF13929 mRNA_stabil: mRNA sta 89.9 13 0.00029 32.8 14.3 136 132-267 146-290 (292)
328 KOG0276 Vesicle coat complex C 89.9 5.5 0.00012 38.8 11.2 136 41-213 614-749 (794)
329 PF13170 DUF4003: Protein of u 89.7 15 0.00033 33.2 20.8 127 202-330 79-222 (297)
330 PF10345 Cohesin_load: Cohesin 89.6 26 0.00057 35.7 38.0 436 77-523 29-604 (608)
331 KOG4570 Uncharacterized conser 89.4 7.7 0.00017 34.5 10.9 105 144-250 59-165 (418)
332 KOG1586 Protein required for f 89.1 13 0.00029 31.6 19.9 27 226-252 160-186 (288)
333 KOG4077 Cytochrome c oxidase, 89.0 3.7 8E-05 30.8 7.5 62 447-508 67-128 (149)
334 KOG1464 COP9 signalosome, subu 88.9 15 0.00032 32.0 20.9 157 197-353 39-219 (440)
335 PF11207 DUF2989: Protein of u 88.6 13 0.00028 31.0 12.3 73 411-484 123-198 (203)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 7.1 0.00015 27.9 9.1 61 341-401 23-83 (103)
337 PF04097 Nic96: Nup93/Nic96; 88.2 32 0.0007 35.0 21.2 64 78-143 111-181 (613)
338 PF13174 TPR_6: Tetratricopept 88.1 0.94 2E-05 24.6 3.3 26 469-494 5-30 (33)
339 PF13374 TPR_10: Tetratricopep 88.0 1.4 3.1E-05 25.5 4.3 28 465-492 3-30 (42)
340 TIGR02561 HrpB1_HrpK type III 88.0 11 0.00025 29.5 11.2 17 160-176 55-71 (153)
341 PF06552 TOM20_plant: Plant sp 87.8 4.2 9.1E-05 33.0 7.8 29 57-88 7-35 (186)
342 COG2909 MalT ATP-dependent tra 87.8 37 0.0008 35.2 30.4 224 266-489 426-684 (894)
343 COG1747 Uncharacterized N-term 87.6 28 0.0006 33.6 23.2 164 288-458 64-234 (711)
344 COG4455 ImpE Protein of avirul 87.6 3.7 8E-05 34.3 7.5 77 43-122 3-80 (273)
345 KOG2066 Vacuolar assembly/sort 87.5 36 0.00077 34.7 30.0 105 85-197 363-467 (846)
346 PF07575 Nucleopor_Nup85: Nup8 87.2 36 0.00078 34.4 18.1 36 232-272 309-344 (566)
347 TIGR02561 HrpB1_HrpK type III 87.0 13 0.00028 29.2 12.2 51 373-423 23-73 (153)
348 PF07721 TPR_4: Tetratricopept 86.9 0.91 2E-05 23.3 2.6 21 45-65 5-25 (26)
349 KOG0890 Protein kinase of the 86.8 71 0.0015 37.4 36.8 154 45-209 1387-1542(2382)
350 PF13374 TPR_10: Tetratricopep 86.8 1.8 4E-05 25.0 4.3 26 396-421 4-29 (42)
351 KOG3807 Predicted membrane pro 86.7 23 0.00051 31.8 13.4 60 154-213 280-339 (556)
352 PRK10941 hypothetical protein; 86.5 8.3 0.00018 34.2 9.8 78 80-159 183-261 (269)
353 PF13181 TPR_8: Tetratricopept 85.9 1.4 3.1E-05 24.1 3.3 28 466-493 3-30 (34)
354 PF06552 TOM20_plant: Plant sp 85.2 11 0.00023 30.7 8.8 72 380-459 55-137 (186)
355 KOG2396 HAT (Half-A-TPR) repea 84.8 39 0.00084 32.5 34.9 68 40-110 104-172 (568)
356 smart00028 TPR Tetratricopepti 84.7 1.6 3.4E-05 23.0 3.2 28 44-71 4-31 (34)
357 KOG0686 COP9 signalosome, subu 84.6 34 0.00075 31.9 13.9 176 79-263 151-352 (466)
358 COG3947 Response regulator con 84.6 28 0.00061 30.8 16.5 70 396-466 281-355 (361)
359 PF13181 TPR_8: Tetratricopept 84.5 2.5 5.4E-05 23.1 3.9 27 80-106 3-29 (34)
360 KOG0376 Serine-threonine phosp 84.4 2.2 4.9E-05 40.1 5.5 115 39-160 2-116 (476)
361 PF14561 TPR_20: Tetratricopep 84.3 13 0.00027 26.5 8.6 53 77-129 21-73 (90)
362 KOG0128 RNA-binding protein SA 83.9 56 0.0012 33.7 31.1 201 77-284 112-341 (881)
363 KOG4642 Chaperone-dependent E3 83.2 24 0.00052 30.3 10.3 92 46-142 15-106 (284)
364 KOG1586 Protein required for f 82.8 29 0.00063 29.7 18.6 94 365-458 118-224 (288)
365 PF00637 Clathrin: Region in C 82.4 1 2.2E-05 35.6 2.3 83 120-210 13-95 (143)
366 PF07163 Pex26: Pex26 protein; 81.2 38 0.00083 29.9 12.8 89 119-208 88-181 (309)
367 KOG4507 Uncharacterized conser 80.3 10 0.00022 36.9 8.1 129 377-506 590-718 (886)
368 PRK11619 lytic murein transgly 80.2 75 0.0016 32.6 36.6 318 85-421 40-373 (644)
369 PF10579 Rapsyn_N: Rapsyn N-te 79.9 3.9 8.4E-05 27.9 3.9 47 90-136 18-65 (80)
370 TIGR03504 FimV_Cterm FimV C-te 79.7 4.7 0.0001 24.0 3.8 20 437-456 7-26 (44)
371 PF00637 Clathrin: Region in C 79.7 0.88 1.9E-05 35.9 1.0 45 233-277 20-64 (143)
372 smart00386 HAT HAT (Half-A-TPR 79.4 4.1 9E-05 21.7 3.5 29 478-506 1-29 (33)
373 smart00028 TPR Tetratricopepti 79.3 4.8 0.0001 20.9 3.9 26 467-492 4-29 (34)
374 PRK10941 hypothetical protein; 79.1 30 0.00065 30.8 10.3 74 154-229 186-260 (269)
375 PRK11619 lytic murein transgly 78.7 84 0.0018 32.3 39.4 316 46-388 38-374 (644)
376 TIGR03504 FimV_Cterm FimV C-te 78.7 5.5 0.00012 23.7 3.9 21 262-282 6-26 (44)
377 PF14853 Fis1_TPR_C: Fis1 C-te 78.4 6.1 0.00013 24.7 4.2 20 87-106 10-29 (53)
378 COG4455 ImpE Protein of avirul 78.1 20 0.00043 30.3 8.2 51 334-385 10-60 (273)
379 PF14853 Fis1_TPR_C: Fis1 C-te 77.8 6.5 0.00014 24.6 4.2 29 45-73 5-33 (53)
380 KOG4077 Cytochrome c oxidase, 77.5 18 0.00038 27.4 6.9 56 344-399 68-123 (149)
381 PF09670 Cas_Cas02710: CRISPR- 77.5 46 0.001 31.5 11.7 56 368-423 139-198 (379)
382 KOG1308 Hsp70-interacting prot 77.4 3.1 6.7E-05 37.4 3.7 85 91-178 127-211 (377)
383 TIGR02508 type_III_yscG type I 77.3 25 0.00053 25.4 8.2 15 439-453 49-63 (115)
384 COG3947 Response regulator con 77.0 54 0.0012 29.2 17.4 71 362-432 281-356 (361)
385 KOG2471 TPR repeat-containing 76.9 73 0.0016 30.7 17.5 41 197-237 29-69 (696)
386 PRK09687 putative lyase; Provi 76.8 57 0.0012 29.3 28.4 59 219-281 36-98 (280)
387 KOG0545 Aryl-hydrocarbon recep 76.6 41 0.00089 29.0 9.7 61 116-177 232-292 (329)
388 PF09986 DUF2225: Uncharacteri 76.4 46 0.001 28.4 10.4 66 431-496 120-197 (214)
389 PF13934 ELYS: Nuclear pore co 75.9 34 0.00073 29.6 9.6 119 39-171 76-198 (226)
390 KOG0128 RNA-binding protein SA 75.1 1.1E+02 0.0023 31.8 32.7 134 113-250 112-261 (881)
391 PF04190 DUF410: Protein of un 74.5 62 0.0013 28.7 19.5 25 148-172 89-113 (260)
392 PRK09687 putative lyase; Provi 73.6 69 0.0015 28.8 30.2 216 114-353 37-262 (280)
393 PF10579 Rapsyn_N: Rapsyn N-te 73.5 12 0.00026 25.6 4.9 46 441-486 18-65 (80)
394 TIGR02508 type_III_yscG type I 73.4 32 0.00069 24.9 8.5 87 375-468 20-106 (115)
395 KOG3364 Membrane protein invol 73.3 15 0.00033 28.2 5.9 24 120-143 77-100 (149)
396 KOG3364 Membrane protein invol 73.0 41 0.0009 26.0 9.7 67 427-494 30-101 (149)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 72.2 34 0.00074 26.2 7.9 44 447-490 81-125 (126)
398 KOG4521 Nuclear pore complex, 71.3 1.6E+02 0.0035 32.0 14.2 128 150-279 984-1126(1480)
399 PF12862 Apc5: Anaphase-promot 70.8 17 0.00037 26.0 5.8 55 52-106 9-69 (94)
400 PF09986 DUF2225: Uncharacteri 70.5 38 0.00083 28.9 8.6 51 94-144 141-195 (214)
401 PF12862 Apc5: Anaphase-promot 70.5 37 0.00079 24.3 7.7 23 470-492 47-69 (94)
402 KOG2908 26S proteasome regulat 70.3 81 0.0018 28.8 10.5 63 368-430 83-156 (380)
403 KOG4642 Chaperone-dependent E3 70.2 72 0.0016 27.6 10.7 85 335-421 20-105 (284)
404 KOG0551 Hsp90 co-chaperone CNS 68.4 33 0.00071 31.1 7.7 94 82-176 85-180 (390)
405 PF14689 SPOB_a: Sensor_kinase 68.3 18 0.00039 23.5 4.8 23 434-456 28-50 (62)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 68.3 52 0.0011 25.2 13.1 43 132-174 81-124 (126)
407 PF04910 Tcf25: Transcriptiona 66.4 1.2E+02 0.0025 28.6 20.4 118 53-177 22-167 (360)
408 KOG2063 Vacuolar assembly/sort 65.9 1.9E+02 0.0041 30.8 18.1 116 116-232 506-638 (877)
409 PF04190 DUF410: Protein of un 65.4 1E+02 0.0022 27.4 17.8 82 184-284 89-170 (260)
410 KOG0991 Replication factor C, 65.4 90 0.002 26.9 11.8 68 195-264 202-281 (333)
411 KOG3677 RNA polymerase I-assoc 65.2 82 0.0018 29.6 9.7 62 114-175 235-298 (525)
412 cd00280 TRFH Telomeric Repeat 65.0 41 0.0009 27.6 7.0 49 94-142 85-139 (200)
413 PF09797 NatB_MDM20: N-acetylt 64.5 81 0.0017 29.8 10.4 148 57-209 151-310 (365)
414 PRK13184 pknD serine/threonine 64.4 2.1E+02 0.0046 30.9 28.7 99 42-143 476-581 (932)
415 KOG4521 Nuclear pore complex, 64.2 2.2E+02 0.0048 31.1 15.1 116 396-518 985-1124(1480)
416 PF11846 DUF3366: Domain of un 64.0 47 0.001 27.8 7.9 36 460-495 140-175 (193)
417 PF04762 IKI3: IKI3 family; I 63.9 2.2E+02 0.0048 30.9 17.1 45 46-91 699-745 (928)
418 COG0790 FOG: TPR repeat, SEL1 63.8 1.1E+02 0.0025 27.5 23.1 79 411-496 172-269 (292)
419 KOG2062 26S proteasome regulat 62.9 1.9E+02 0.0041 29.8 24.4 386 130-525 39-457 (929)
420 PF04910 Tcf25: Transcriptiona 62.9 1.4E+02 0.003 28.2 19.2 153 324-494 39-223 (360)
421 PF10475 DUF2450: Protein of u 62.6 1.2E+02 0.0026 27.5 11.3 52 155-213 104-155 (291)
422 PF09477 Type_III_YscG: Bacter 62.3 60 0.0013 23.9 8.4 89 406-501 18-106 (116)
423 KOG2422 Uncharacterized conser 62.3 1.7E+02 0.0037 29.1 15.4 160 54-213 251-447 (665)
424 KOG4507 Uncharacterized conser 62.3 49 0.0011 32.6 8.2 88 54-144 226-313 (886)
425 KOG0376 Serine-threonine phosp 60.3 21 0.00046 33.9 5.5 105 332-439 11-115 (476)
426 PHA02875 ankyrin repeat protei 60.1 1.7E+02 0.0036 28.2 15.8 76 195-278 9-88 (413)
427 PF09670 Cas_Cas02710: CRISPR- 59.6 1.5E+02 0.0033 28.1 11.2 59 46-107 136-198 (379)
428 COG4259 Uncharacterized protei 59.1 65 0.0014 23.2 6.7 48 448-495 56-103 (121)
429 COG5159 RPN6 26S proteasome re 58.7 1.3E+02 0.0029 26.7 20.1 126 226-351 9-151 (421)
430 cd08819 CARD_MDA5_2 Caspase ac 58.6 62 0.0013 22.8 6.9 33 162-200 49-81 (88)
431 PF07575 Nucleopor_Nup85: Nup8 57.0 2.3E+02 0.0049 28.8 20.0 29 37-66 144-173 (566)
432 PF11817 Foie-gras_1: Foie gra 56.2 58 0.0013 28.6 7.4 61 113-173 177-242 (247)
433 KOG0551 Hsp90 co-chaperone CNS 56.0 93 0.002 28.4 8.3 89 121-212 88-180 (390)
434 PF10366 Vps39_1: Vacuolar sor 55.5 76 0.0016 23.5 6.8 26 432-457 42-67 (108)
435 PF14689 SPOB_a: Sensor_kinase 55.4 33 0.00072 22.3 4.3 21 155-175 29-49 (62)
436 PF15297 CKAP2_C: Cytoskeleton 55.3 1.7E+02 0.0038 27.0 10.1 65 409-475 118-186 (353)
437 KOG2422 Uncharacterized conser 54.9 2.3E+02 0.005 28.2 16.3 24 328-351 287-310 (665)
438 KOG0545 Aryl-hydrocarbon recep 54.5 1.5E+02 0.0032 25.9 9.9 62 151-214 232-293 (329)
439 PF04762 IKI3: IKI3 family; I 54.4 2.7E+02 0.0059 30.3 13.1 30 220-249 812-843 (928)
440 KOG1308 Hsp70-interacting prot 54.2 20 0.00043 32.5 4.0 115 372-490 126-241 (377)
441 KOG0687 26S proteasome regulat 54.1 1.8E+02 0.0038 26.6 14.0 93 362-456 106-208 (393)
442 COG4976 Predicted methyltransf 53.9 26 0.00056 29.9 4.4 56 50-108 4-59 (287)
443 KOG3824 Huntingtin interacting 53.9 48 0.001 29.7 6.2 52 53-107 128-179 (472)
444 PF11846 DUF3366: Domain of un 53.8 46 0.001 27.8 6.2 31 218-248 142-172 (193)
445 KOG1114 Tripeptidyl peptidase 53.1 3.2E+02 0.0068 29.3 13.2 29 220-248 1231-1259(1304)
446 PF00244 14-3-3: 14-3-3 protei 52.3 1.6E+02 0.0035 25.7 11.4 47 446-492 143-197 (236)
447 TIGR02710 CRISPR-associated pr 52.1 2.1E+02 0.0046 27.0 10.8 18 369-386 139-156 (380)
448 PF00244 14-3-3: 14-3-3 protei 51.9 1.6E+02 0.0035 25.6 11.6 40 261-300 7-46 (236)
449 KOG0686 COP9 signalosome, subu 51.8 2.2E+02 0.0047 27.0 14.8 63 256-318 151-215 (466)
450 PF11817 Foie-gras_1: Foie gra 51.8 57 0.0012 28.6 6.7 57 190-246 183-244 (247)
451 COG0735 Fur Fe2+/Zn2+ uptake r 50.7 1.2E+02 0.0026 24.0 7.6 60 314-374 10-69 (145)
452 smart00777 Mad3_BUB1_I Mad3/BU 49.5 1.1E+02 0.0025 23.4 7.0 43 131-173 80-123 (125)
453 PF04781 DUF627: Protein of un 49.1 45 0.00097 24.8 4.5 22 436-457 3-24 (111)
454 PRK10564 maltose regulon perip 48.2 41 0.00088 30.1 5.0 29 433-461 261-289 (303)
455 PRK13342 recombination factor 47.9 2.6E+02 0.0057 26.9 20.2 36 407-442 243-278 (413)
456 PF10255 Paf67: RNA polymerase 47.7 2.6E+02 0.0056 26.7 10.5 59 259-317 126-191 (404)
457 COG5108 RPO41 Mitochondrial DN 47.4 1.5E+02 0.0033 30.0 8.9 91 330-422 33-131 (1117)
458 COG0735 Fur Fe2+/Zn2+ uptake r 47.2 1.3E+02 0.0029 23.8 7.4 30 261-290 26-55 (145)
459 PRK10564 maltose regulon perip 47.1 49 0.0011 29.7 5.3 41 395-435 258-298 (303)
460 KOG4567 GTPase-activating prot 46.9 2.2E+02 0.0048 25.8 9.8 69 170-244 264-342 (370)
461 PF14561 TPR_20: Tetratricopep 46.6 1E+02 0.0023 21.9 8.6 31 113-143 21-51 (90)
462 COG4976 Predicted methyltransf 46.6 45 0.00097 28.5 4.7 54 404-458 5-58 (287)
463 PF10255 Paf67: RNA polymerase 46.2 2.5E+02 0.0055 26.8 10.1 61 188-248 125-192 (404)
464 PF04781 DUF627: Protein of un 46.1 1.2E+02 0.0027 22.5 8.6 27 47-73 2-28 (111)
465 KOG1498 26S proteasome regulat 46.0 2.6E+02 0.0057 26.3 17.6 245 68-338 3-300 (439)
466 cd08819 CARD_MDA5_2 Caspase ac 45.9 1E+02 0.0023 21.7 7.6 64 414-483 22-85 (88)
467 PF11848 DUF3368: Domain of un 45.8 68 0.0015 19.5 5.1 24 234-257 16-39 (48)
468 smart00777 Mad3_BUB1_I Mad3/BU 45.4 1.4E+02 0.003 22.9 9.2 42 448-489 82-124 (125)
469 KOG3807 Predicted membrane pro 44.8 1.9E+02 0.0042 26.3 8.5 58 119-177 280-339 (556)
470 KOG0991 Replication factor C, 44.7 2.1E+02 0.0046 24.8 12.8 59 370-429 202-273 (333)
471 PF12968 DUF3856: Domain of Un 43.2 1.5E+02 0.0032 22.6 7.3 62 430-491 56-127 (144)
472 PHA02875 ankyrin repeat protei 43.1 3.1E+02 0.0067 26.3 14.9 141 156-313 6-155 (413)
473 PF11663 Toxin_YhaV: Toxin wit 43.0 25 0.00054 27.0 2.5 21 443-463 109-129 (140)
474 KOG0292 Vesicle coat complex C 43.0 4.4E+02 0.0095 28.0 21.6 128 90-249 655-782 (1202)
475 PRK12798 chemotaxis protein; R 42.6 3.1E+02 0.0067 26.2 23.0 243 32-286 72-326 (421)
476 KOG0292 Vesicle coat complex C 41.9 1.3E+02 0.0028 31.6 7.8 131 50-214 652-782 (1202)
477 KOG2300 Uncharacterized conser 41.9 3.4E+02 0.0074 26.5 37.4 406 81-492 10-513 (629)
478 KOG4567 GTPase-activating prot 41.1 1.9E+02 0.0042 26.2 7.8 71 275-350 263-343 (370)
479 COG5191 Uncharacterized conser 41.0 93 0.002 28.1 6.0 76 75-153 104-180 (435)
480 PF08870 DUF1832: Domain of un 40.5 1.2E+02 0.0027 22.7 5.9 27 166-192 6-33 (113)
481 COG0790 FOG: TPR repeat, SEL1 39.6 2.9E+02 0.0062 24.9 24.7 17 197-213 53-69 (292)
482 PF03745 DUF309: Domain of unk 39.4 1.1E+02 0.0023 20.0 6.2 19 51-69 9-27 (62)
483 KOG1839 Uncharacterized protei 38.6 5.8E+02 0.013 28.5 12.2 94 45-141 936-1042(1236)
484 PHA00425 DNA packaging protein 38.5 1.3E+02 0.0028 20.6 5.7 50 375-435 14-63 (88)
485 cd02683 MIT_1 MIT: domain cont 38.1 1.3E+02 0.0029 20.6 6.8 26 496-521 44-69 (77)
486 PF09454 Vps23_core: Vps23 cor 37.6 1.2E+02 0.0026 20.0 5.0 48 113-161 7-54 (65)
487 PF11663 Toxin_YhaV: Toxin wit 37.0 45 0.00099 25.7 3.1 35 473-508 104-138 (140)
488 PF13762 MNE1: Mitochondrial s 36.7 2.1E+02 0.0046 22.6 11.2 23 224-246 43-65 (145)
489 cd02680 MIT_calpain7_2 MIT: do 36.4 1.4E+02 0.003 20.4 6.3 16 477-492 19-34 (75)
490 PF02184 HAT: HAT (Half-A-TPR) 36.3 77 0.0017 17.4 3.4 13 410-422 3-15 (32)
491 PF12069 DUF3549: Protein of u 35.8 3.6E+02 0.0079 25.0 12.8 138 363-508 169-308 (340)
492 TIGR03184 DNA_S_dndE DNA sulfu 35.2 1.7E+02 0.0037 21.6 5.7 22 166-187 5-27 (105)
493 KOG2471 TPR repeat-containing 34.8 4.5E+02 0.0097 25.8 19.7 107 368-476 248-381 (696)
494 PF07720 TPR_3: Tetratricopept 34.7 89 0.0019 17.6 4.2 20 468-487 5-24 (36)
495 KOG2034 Vacuolar sorting prote 34.1 6E+02 0.013 27.0 28.6 44 342-386 610-653 (911)
496 PF13762 MNE1: Mitochondrial s 34.1 2.4E+02 0.0051 22.4 9.4 49 429-477 79-128 (145)
497 COG5159 RPN6 26S proteasome re 33.9 3.5E+02 0.0076 24.3 20.8 162 190-351 8-191 (421)
498 COG4259 Uncharacterized protei 33.5 1.9E+02 0.0041 21.0 6.8 43 346-388 58-100 (121)
499 KOG0403 Neoplastic transformat 33.3 4.5E+02 0.0098 25.4 21.0 356 81-460 217-617 (645)
500 PRK09857 putative transposase; 33.3 3.7E+02 0.0081 24.4 9.0 56 371-426 217-272 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-63 Score=501.60 Aligned_cols=477 Identities=15% Similarity=0.201 Sum_probs=380.4
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhh
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 116 (527)
..++...+..+...+.+.|++++|+++|+.|.+.. -..++...+..++..|.+.|.+++|..+|+.+.. |+..+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 33456667888888889999999999999995322 2345666677777888888888888888877754 47778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.+|.+|+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888765 77788888888888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCChhHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD--RGWVPDATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a 274 (527)
+.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888875 46778888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYN 433 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 433 (527)
|+.|+..+|+.++.+|++.|++++|.++|++| ..+..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88888888888888888888888888888888 45677888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE----S-------------------GNEGEVGKVVSMA 490 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 490 (527)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 8888888888888888888888888888888888877755331 1 2246688888888
Q ss_pred HhCCC-CChhhHHHHHHHHH--hchhhhHHHHH
Q 043284 491 TASGS-VESDSWNFLLTRIV--SDLDSGAGALD 520 (527)
Q Consensus 491 ~~~~~-~~~~~~~~ll~~~~--~~~~~a~~~~~ 520 (527)
.+.+. ||..+|..++.... +..+.+...++
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 87775 67777777775221 34444444443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.7e-63 Score=499.87 Aligned_cols=480 Identities=17% Similarity=0.258 Sum_probs=448.9
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
++..++..++..+.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+ .+..|+..+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tyn 476 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYT 476 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHH
Confidence 4455677888889999999999999999832 7999999999999999999999999999998 47788999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|... ++.||..+|+.+|.+|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999877 8999999999999999999
Q ss_pred CChHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 199 DDVEGAIRVLDEMPS--MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (527)
+|++|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|...|.
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 357 MPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
.|+..+|+.++.+|++.|++++|.++|++| ..+..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHc----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 436 IQGFCK----I-------------------GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 436 ~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+..|.+ . +..+.|..+|++|.+.|+.||..||..++.++.+.+..+.+..+++.+..
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 876432 1 12467999999999999999999999999888899999999999998765
Q ss_pred CC-CCChhhHHHHHHHHHhchhhhHHHHHHHHhhc
Q 043284 493 SG-SVESDSWNFLLTRIVSDLDSGAGALDELLVKN 526 (527)
Q Consensus 493 ~~-~~~~~~~~~ll~~~~~~~~~a~~~~~~~l~~~ 526 (527)
.+ .++..+|+.++..+..-.++|..+++.+.+..
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC
Confidence 54 47778999999976323468999999988764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-61 Score=501.09 Aligned_cols=468 Identities=15% Similarity=0.213 Sum_probs=447.1
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
...|+...++.++.+|.+.|++++|..+|+.|. .+|..+|+.++.+|.+.|++++|.++|++|.+ .+..|+..
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ 289 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLM 289 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChh
Confidence 345788899999999999999999999999993 25778999999999999999999999999998 47889999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (527)
+|..++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~ 364 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 46899999999999
Q ss_pred HcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|..++.+|++.|+.+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 99999974 5889999999999999999999999999986 589999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
..++..+++.++.+|++.|++++|..+|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999987 589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--Hhch
Q 043284 436 IQGFCKIGNAKEGIRILEEML-DKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDL 512 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~ 512 (527)
+.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. ..||..+|.+++..+ +|+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCh
Confidence 999999999999999999999 78999999999999999999999999999999984 458999999999965 5999
Q ss_pred hhhHHHHHHHHhhc
Q 043284 513 DSGAGALDELLVKN 526 (527)
Q Consensus 513 ~~a~~~~~~~l~~~ 526 (527)
+.|+.+.+++++++
T Consensus 674 e~~e~~a~~l~~l~ 687 (857)
T PLN03077 674 ELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998864
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-59 Score=471.17 Aligned_cols=466 Identities=16% Similarity=0.233 Sum_probs=407.7
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+.+.|++++|+++|++|.. ..++.|+..+|..++.+|.+.++++.+.+++..+.+ .+..|+..+++.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~-~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEA-GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHH
Confidence 678888888999999999999998843 334568888999999999999999999999998888 467778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
.|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|... |..|+..+|+.++.++.+.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999886 478889999999999999999999999999876 78889999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999889889999999999999999999999999988853 488899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988853 57888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE-KGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 440 (527)
|+.++.+|++.|+.++|.++|++| ..+..||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 999999999999999999999998 667889999999999999999999999999999975 588899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGA 518 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 518 (527)
+.|++++|.+++++| ++.|+..+|+.|+.+|...|+.+.|..+++++....+.+...|..++..+. |++++|.++
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 999999999888765 467899999999999999999999999999888777777778887777443 899999999
Q ss_pred HHHHHhhc
Q 043284 519 LDELLVKN 526 (527)
Q Consensus 519 ~~~~l~~~ 526 (527)
++.+.+..
T Consensus 551 ~~~m~~~g 558 (697)
T PLN03081 551 VETLKRKG 558 (697)
T ss_pred HHHHHHcC
Confidence 88876653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-59 Score=473.05 Aligned_cols=437 Identities=20% Similarity=0.234 Sum_probs=417.6
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...|+.++..+.+.|++++|.++|+.+....+..|+..+|..++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999876667789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999996 379999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
.+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 46999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHH
Q 043284 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (527)
|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++.+|++.|++++|.++|++|.. +|..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~ 392 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLI 392 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999954 7999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD-KGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 474 (527)
+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 69999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhhc
Q 043284 475 YESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVKN 526 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~~ 526 (527)
.+.|++++|.++++++. ..|+..+|+.++..+ +|+.+.|+++++++++.+
T Consensus 473 ~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 473 GREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 99999999999998863 357888999999966 499999999999987653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-59 Score=480.69 Aligned_cols=465 Identities=18% Similarity=0.256 Sum_probs=417.0
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
++...++.++..|.+.|+++.|..+|+.|. .+|..+|+.++.+|.+.|++++|.++|++|.. .+..|+..+|.
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~ 191 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFP 191 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHH
Confidence 455667888999999999999999999983 25788999999999999999999999999988 47888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.+|...+++..+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|++|. .||..+||++|.+|++.
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFEN 266 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 36899999999999999
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVM 278 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (527)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 043284 279 DEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP 358 (527)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (527)
++|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|+++.+.++++.+.+.|..+
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9997 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG 438 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 438 (527)
+..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 999999999999999999999999999854 6888999999999999999999999999986 588999998888887
Q ss_pred HHccCCHHHHHHHHHHHHHCCCC------------------------------CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 439 FCKIGNAKEGIRILEEMLDKGCF------------------------------PNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
|++.|+.+.+.+++..+.+.|+. ||..+|+.++.+|.+.|+.++|.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777776666654 556667777777777777777777777
Q ss_pred HHHhCCC-CChhhHHHHHHHHH--hchhhhHHHHHHHH
Q 043284 489 MATASGS-VESDSWNFLLTRIV--SDLDSGAGALDELL 523 (527)
Q Consensus 489 ~~~~~~~-~~~~~~~~ll~~~~--~~~~~a~~~~~~~l 523 (527)
+|.+.+. ||..+|..++..+. |++++|.++++.+.
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7766553 66777777777554 77777777777665
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-31 Score=284.23 Aligned_cols=465 Identities=13% Similarity=0.099 Sum_probs=381.9
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
....++..+.+.|++++|..+++.+.+..| .++..+..++..+...|++++|.+.|+++.+..|. +...+..++.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~ 507 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD--FFPAAANLAR 507 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Confidence 344566666777777777777777754443 46667888888888888888888888888775443 5566777888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
.+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++... .+.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHH
Confidence 8888888888888888888765 566778888888888889999999888888765 3445667778888899999999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999887654 3467788889999999999999999999988764 3467778888889999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
+.. +.+..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.++.+...++ +..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchH
Confidence 764 33578888889999999999999999999988653 3667777888899999999999999999988753 3366
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+..++.++.+.|++++|...++.+....+.+...+..++..|...|++++|..+|+++.+.. +.+..+++.+...+...
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 77788899999999999999999977778889999999999999999999999999999864 45678889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALD 520 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~ 520 (527)
|+ .+|+.+++++.+.. +-+..++..++..+.+.|++++|.++++++.+.++.+..++..+..... |+.+.|.+.++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99 88999999998853 2345667788899999999999999999999999888888887777443 99999999999
Q ss_pred HHHh
Q 043284 521 ELLV 524 (527)
Q Consensus 521 ~~l~ 524 (527)
++++
T Consensus 896 ~~~~ 899 (899)
T TIGR02917 896 KLLN 899 (899)
T ss_pred HHhC
Confidence 9874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-31 Score=281.44 Aligned_cols=446 Identities=13% Similarity=0.077 Sum_probs=232.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+.+.|++++|.+.|+++.+..| .+...+..+...+...|++++|.+.++.+.+..+. .......++
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~ 438 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP---ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLI 438 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHH
Confidence 3444555555555666666666655544433 23445555555555555555555555555543221 222333344
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|...|+++... .+.+...+..++..+...|++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCH
Confidence 44555555555555555554432 344555555556666666666666666555543 122334445555555555666
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (527)
++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+.+.|++++|..+++++
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666665555443 1244455555555555566666666555555443 224444555555555566666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh
Q 043284 282 EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA 361 (527)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (527)
.+.. +.+...|..+..++...|++++|...++++.+... .+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 5432 23455555566666666666666666666555432 234445555555555666666666666555543 22344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
.+..++..+...|++++|..+++.+....+.+...+..++..+...|++++|...|+++... .|+..++..++.++.+
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 55555555555555555555555554444445555555555555555555555555555543 2333444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
.|++++|.+.++++.+.. +.+...+..++..|.+.|++++|.+.|+++.+..+.++..+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555432 2234444455555555555555555555555554444444443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=9.4e-24 Score=224.29 Aligned_cols=478 Identities=13% Similarity=0.026 Sum_probs=296.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCH-------------HHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNY-------------DTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
++..+..++..+.+.|+.++|.+.++++.+..|+...-. .....++..+...|++++|.+.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 455567778888888888888888888877776422110 0123344567778888888888888876
Q ss_pred CCCCCcChhh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----
Q 043284 107 NPEIKCGENL-FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV---- 181 (527)
Q Consensus 107 ~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---- 181 (527)
..|. +... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..++++......
T Consensus 141 ~~p~--~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GAPP--ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CCCC--ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 5332 2211 1111122234588888888888888765 556677778888888888888888888876432100
Q ss_pred -------------C--------------CChhhH---------------------HHHHHHHHcCCChHHHHHHHHhccc
Q 043284 182 -------------V--------------PNVFTC---------------------NILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 182 -------------~--------------~~~~~~---------------------~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
. |+.... ......+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 100000 0123445667888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhH------------HHHHHHHHhcCChhHHHHHHHH
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD-ATTY------------TVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
... .+...+..+..++.+.|++++|+..|++.++...... ...+ ......+.+.|++++|+..|++
T Consensus 298 ~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 ANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 542 2667788888888888888888888888877643211 1111 1223456678888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH------------------------------
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCK------------------------------ 330 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------ 330 (527)
+.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 88763 235566777788888888888888888887765322 2222211
Q ss_pred ------------HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH
Q 043284 331 ------------VIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN 398 (527)
Q Consensus 331 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (527)
....+...|++++|++.++++.+..+. +...+..+...|.+.|++++|...++++....+.+...+.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 223344567888888888888776533 5666677777888888888888888877544444444443
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHHHHHHHHHH
Q 043284 399 TLIAGMCESAELTEAGRLWDDMVEK---------------------------------------GVEPNVFTYNMLIQGF 439 (527)
Q Consensus 399 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~p~~~~~~~l~~~~ 439 (527)
.+...+...++.++|+..++.+... ..+.+...+..+...+
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3333333334444443333322100 0122334455566666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH--HHhchhhhHH
Q 043284 440 CKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR--IVSDLDSGAG 517 (527)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~a~~ 517 (527)
.+.|++++|+..|+++++.. +.+...+..++..+...|++++|.+.++.+.+..+.+...+..+... ..|+.++|.+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777777777642 22455666677777777777777777777665554444444433332 2277777777
Q ss_pred HHHHHHhh
Q 043284 518 ALDELLVK 525 (527)
Q Consensus 518 ~~~~~l~~ 525 (527)
.++++++.
T Consensus 693 ~~~~al~~ 700 (1157)
T PRK11447 693 TFNRLIPQ 700 (1157)
T ss_pred HHHHHhhh
Confidence 77776653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=9.4e-24 Score=224.30 Aligned_cols=471 Identities=14% Similarity=0.042 Sum_probs=348.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh--------
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN-------- 115 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------- 115 (527)
+-..+..+...++.+.|.+.+++++..+|+ ++..+..++..+...|+.++|.+.++++.+..|..+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 677888899999999999999999888874 788999999999999999999999999998755433221
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 116 ------LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 116 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
.....+..+...|++++|++.|+++.+.+ +++.. ............|+.++|++.++++... .+.+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~ 184 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLR 184 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 12344557889999999999999999765 44432 2222222233469999999999999986 34466778
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC------------------C--------------CCHHHH-------------
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM------------------V--------------PNLVTH------------- 223 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~--------------p~~~~~------------- 223 (527)
..+...+...|+.++|++.++++..... . |+....
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 8899999999999999999998754320 0 110000
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH-
Q 043284 224 --------TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTY- 293 (527)
Q Consensus 224 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~- 293 (527)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 011345667899999999999999874 3478889999999999999999999999998764321 11112
Q ss_pred -----------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 294 -----------GVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 294 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
......+.+.|++++|...|+++.+.... +...+..+..++...|++++|++.|+++.+..+. +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 12244677899999999999999987543 5667777899999999999999999999876533 2322
Q ss_pred HHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 363 SST------------------------------------------IIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 363 ~~~------------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
+.. +...+...|++++|...|++.....|.+...+..+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 222 22334567889999999999877777788888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---------------------
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDK--------------------- 458 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 458 (527)
...|...|++++|...++++.+. .| +...+..+...+...|+.++|+..++++...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999999999998865 33 3333332222333444444444443322100
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHH
Q 043284 459 ------------------GCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGA 518 (527)
Q Consensus 459 ------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~ 518 (527)
..+++...+..++..+.+.|++++|++.++++.+..|.+...+..+.... .|+.++|++.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 12334556677888899999999999999999998888888887777744 3999999999
Q ss_pred HHHHHhh
Q 043284 519 LDELLVK 525 (527)
Q Consensus 519 ~~~~l~~ 525 (527)
++++++.
T Consensus 660 l~~ll~~ 666 (1157)
T PRK11447 660 LAKLPAT 666 (1157)
T ss_pred HHHHhcc
Confidence 9988764
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5e-25 Score=199.20 Aligned_cols=451 Identities=14% Similarity=0.104 Sum_probs=374.7
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
...........|+....+.|++++|.+.....-+.+|.. ......+-..+....+++....--....+..+. -..
T Consensus 43 ~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q--~ae 117 (966)
T KOG4626|consen 43 KTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ--GAE 117 (966)
T ss_pred cCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc---ccceeeehhhhhcccchhhhhhhhhhhhhccch--HHH
Confidence 334444557788888999999999999998887666643 333444445566667777766655555543332 677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH-HHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN-ILIKA 194 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~ 194 (527)
.|..+...+-..|+++.|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+.... .|+..... .+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHH
Confidence 89999999999999999999999999875 556889999999999999999999999888754 56554433 34555
Q ss_pred HHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 043284 195 LCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (527)
.-..|+.++|...+.+.++.. |. ...|..|...+-.+|+...|++.|++.++.+. .-...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchH
Confidence 566899999999999888753 33 46789999999999999999999999998742 245788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 274 AVKVMDEMEDNGVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 274 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
|+..|.+.... .| ....+..+...|...|+.+.|+..+++.++..+. -+..|+.+..++-..|+..+|...|.+.+
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998876 44 4678888888999999999999999999986433 36689999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFT 431 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 431 (527)
...+ ......+.|..+|...|.++.|..+|.....-.+.-....+.|...|-++|++++|+..|++... +.|+ ...
T Consensus 348 ~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 348 RLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred HhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 8753 36677888999999999999999999999776666678899999999999999999999999984 5777 568
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
|+.+...|-..|+.+.|+..+.+++.. .|.. ..++.|+..|..+|+..+|+.-++.+.+..|.-++.+..++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 999999999999999999999999984 4664 578899999999999999999999999999877778877777
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.9e-22 Score=199.97 Aligned_cols=457 Identities=11% Similarity=0.024 Sum_probs=267.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
.+..+...|++++|+..|+.+++.+|+ +..++..+...+...|++++|+..++++.+..|. +...+..+ ..
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~L-a~--- 120 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSL-AA--- 120 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHH-HH---
Confidence 333444559999999999999998885 5889999999999999999999999999987552 44444333 22
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-HHHHHc
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA--------LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL-IKALCK 197 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 197 (527)
.+++++|.++++++.... |.+..++..+... |.+. ++|.+.++ .... ...|+....... ...|.+
T Consensus 121 i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATF-AASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred hccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHH
Confidence 289999999999998875 4445555555544 4444 33333333 2111 122233333333 667777
Q ss_pred CCChHHHHHHHHhcccCCCC------------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMV------------------------------PNLVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
.|++++|++.+.++.+.+.. -+...+..+...+.+.|+.++|.+++.++.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 77777777777776665421 233334444555556666666666665543
Q ss_pred HCCCC-CCHHhH------------------------------HHHHHH--------------------------------
Q 043284 248 DRGWV-PDATTY------------------------------TVLMDG-------------------------------- 264 (527)
Q Consensus 248 ~~~~~-~~~~~~------------------------------~~l~~~-------------------------------- 264 (527)
..... |...++ -.++..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 22100 111111 000111
Q ss_pred -------------------------------HHhcCChhHHHHHHHHHHHC-C-CCC-----------------------
Q 043284 265 -------------------------------YIKLGRLTDAVKVMDEMEDN-G-VEP----------------------- 288 (527)
Q Consensus 265 -------------------------------~~~~g~~~~a~~~~~~~~~~-~-~~~----------------------- 288 (527)
..+.|+.++|.++++..... + ...
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 11223333333333332220 0 000
Q ss_pred -----------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 043284 289 -----------------------------------------NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327 (527)
Q Consensus 289 -----------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (527)
+...|..+..++.. +++++|...+.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 11112222222222 33333444333333321 22222
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
...+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...++......+.+...+..+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 222233334566677777666665443 222333445556666677777777777776544444444444444444455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++++... +.+...+..++.++...|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888888888877755 5667777778888888888888888888888753 224456777777888888888888888
Q ss_pred HHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 488 SMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 488 ~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
+++.+..|.+...+..+..... |+++.|+..++++++++
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888887777766666666433 88888888888887653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7.5e-24 Score=191.68 Aligned_cols=431 Identities=16% Similarity=0.114 Sum_probs=359.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
....+..-..+.|++.+|++.-..+-+.++. +......+-..+.+..+.++...--....+.. +.-..+|..+...+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 4566777788999999999998888776554 33444455566777777877766665555543 55678999999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHhcCChHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT-TILGGYVWRGDIEN 238 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~ 238 (527)
-..|++++|+.+++.+.+. .+..+..|..+..++...|+.+.|.+.|.+.++.+ |+..... .+....-..|+.++
T Consensus 127 kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 9999999999999999875 23357889999999999999999999999988764 6655443 34445556899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
|...|.+.++.. +--...|..|.-.+...|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..+.+..
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 999999988873 224567889999999999999999999999986 454 5789999999999999999999999888
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHH
Q 043284 318 QRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTY 397 (527)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (527)
...+. ....+..+...|..+|+.+.|+..|++.++..+. -+..|+.+..++-..|++.+|.+.+.+...-.+......
T Consensus 280 ~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 280 NLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred hcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 75322 4566777888899999999999999999987533 467899999999999999999999999987777888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLY 475 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 475 (527)
+.|...|...|.+++|..+|....+. .|. ....+.|...|-.+|++++|+..|+++++ +.|+. ..++.++..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999999865 555 56789999999999999999999999998 67875 67999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 476 ESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
..|+.+.|.+.+.++..-.|.-.+....|.+... |+...|.+.|+.+|+++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999988766667777766443 99999999999998764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.8e-22 Score=197.04 Aligned_cols=432 Identities=13% Similarity=0.036 Sum_probs=310.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..+.+.|++++|+..|+++++..| ++..|..+..++.+.|++++|++.++.+.+..|. +...+..+..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a 203 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 45678889999999999999999987665 5668999999999999999999999999987544 66788899999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+...|++++|+..|......+ ..+......++..+......+.+...+ .. .+++...+..+.. +........
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l----~~--~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEIL----ET--KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHH----hc--CCCCCCCHHHHHH-HHHHccCCc
Confidence 999999999999888776543 222222222222221111122233322 21 1222333333333 222212222
Q ss_pred HHHHHHhcccCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNL-VTHTTILGG---YVWRGDIENAKRVFGDILDRG--WVPDATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
...-+....+. .++. ..+..+... ....+++++|.+.|+..++.+ .+.....+..+..++...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222221111 1111 111111111 123578999999999999864 123456788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 043284 278 MDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357 (527)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (527)
|++..+.. +.....|..+...+...|++++|...|++..+.+. .+...+..+..++...|++++|...|++.....+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 99998763 22466888888999999999999999999988643 3577888899999999999999999999998763
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------H
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF------T 431 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~ 431 (527)
.+...+..+..++.+.|++++|...|++.....+.+...++.+...+...|++++|+..|++..+.....+.. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 3667778888999999999999999999977777788999999999999999999999999988752211111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
++.....+...|++++|..++++++... |+ ...+..++..+.+.|++++|.+.|+++.+..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1222223344699999999999998854 54 456888999999999999999999998877653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.3e-20 Score=188.35 Aligned_cols=427 Identities=13% Similarity=0.022 Sum_probs=305.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+...+..+.+.|++++|+..|+++.+..| +...|..+..+|.+.|++++|++.+++.++.+ +.+..++..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 456778888899999999999999988644 56788899999999999999999999999875 56678899999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
...|++++|+.-|.......+.. ......++..+........+...++.-. ++...+..+.. +.........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKKFAESKAKEILETKP-----ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999998887765542221 1111222222222111223333332211 12222222222 2221111222
Q ss_pred HHHHHHHHHCCCCCC-HHhHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPD-ATTYTVLMDGY---IKLGRLTDAVKVMDEMEDNG-VEP-NEVTYGVMIEAFCKGKKSGEARNLL 313 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (527)
..-+....+. .+. ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2112211111 111 11111111111 23478999999999998764 223 4567888888999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 043284 314 DDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPS 393 (527)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (527)
++..+..+. ....+..+..++...|++++|...++.+.+.+ +.+..++..+...+...|++++|...|++.....+.+
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 999886432 45677888889999999999999999998875 3467888899999999999999999999998878888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-H-------
Q 043284 394 LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-T------- 465 (527)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~------- 465 (527)
...+..++.++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|+++++.. |+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHH
Confidence 899999999999999999999999999875 23357788999999999999999999999999753 321 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhh
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVK 525 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~ 525 (527)
.+......+...|++++|.++++++....+.+...+..+.... .|+++.|.+.+++++++
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1222222344469999999999999888776665666655533 39999999999998775
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.4e-20 Score=187.31 Aligned_cols=361 Identities=13% Similarity=0.084 Sum_probs=185.4
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
++.+++.-.-+|............+..-...++..+.+.|++++|..+++.+....|. +...+..++.+....|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHH
Confidence 4444444444444332222211222233344445555556666666666666554333 33344444455555666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
|++.++++.... |.+...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 666666665554 344555555556666666666666666665543 12234455555556666666666666665554
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 213 SMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 213 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
..... +...+..+ ..+...|++++|...++.+++....++...+..+...+...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 43211 12222222 2345556666666666665554322233333344455556666666666666655543 223445
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGE----ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...++++....+ .+......+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5555555666666553 55555555554322 444555555566666666666666666555432 23444455555
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
++.+.|++++|...|+.+....+.+...+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666666666666666554333333333333445555566666666666665544
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-20 Score=180.26 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=353.0
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
..+|+....|+..++-.|+++.+..+.+-+++....-..-.+.|..+++++...|++++|...|....+..+.. ....+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~ 345 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPL 345 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccc
Confidence 34677888899999999999999999988876543333345679999999999999999999999988753321 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK----RYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...++..|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..++.+.... .+.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 688999999999999999999998875 566778888888887765 567888888887765 3557788888877
Q ss_pred HHHcCCChHHHHHHHHhcc----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HhHHH
Q 043284 194 ALCKKDDVEGAIRVLDEMP----SMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR---GWVPDA------TTYTV 260 (527)
Q Consensus 194 ~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ 260 (527)
.+-..+-+.. +.+|.... ..+..+.....|.+.......|+++.|...|...+.. ...++. .+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 7765554443 76665543 3444577888999999999999999999999988765 122232 23344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
+..+.-..++.+.|.+.|..+.+. .|+ +..|.-++...-..+...+|...++.....+ ..++..+..+...+.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 667777788999999999999876 444 3445455544445678889999999988754 235566666777888888
Q ss_pred CHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHH------------cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 340 KVEDACELWKRLLRKN-CMPDNAISSTIIHWLCK------------EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE 406 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (527)
.+..|.+-|+.+.+.- ..+|+.....|...|.+ .+..++|+++|.++....|.|...-|.++-+++.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 8888888777766542 23566666666665543 3457889999999988889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK-GCFPNKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
.|++.+|..+|.+..+.. .-...+|..+.++|..+|++..|++.|+...+. +-..+..+...|++++.+.|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999873 235678999999999999999999999998854 333467789999999999999999999
Q ss_pred HHHHHHhCCCCChhhHH
Q 043284 486 VVSMATASGSVESDSWN 502 (527)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ 502 (527)
.+..+....|.++....
T Consensus 738 ~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHhCCccchHHh
Confidence 99999888876665433
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=5.5e-20 Score=187.03 Aligned_cols=419 Identities=10% Similarity=0.014 Sum_probs=290.9
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.++....-.+.+....|+.++|++++..+....| .+...+..+...+...|++++|.++|+++.+..|. +...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Confidence 3444455667778889999999999999854333 46667899999999999999999999999886554 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++... .+.+...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 88889999999999999999998874 55666 888889999999999999999999876 333556667788888889
Q ss_pred CChHHHHHHHHhcccCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCHH-hHH---
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNL------VTHTTILGGYVW-----RGDI---ENAKRVFGDILDR-GWVPDAT-TYT--- 259 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~--- 259 (527)
+..+.|++.++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999999987775 2332 111222222221 1223 6677778777754 1122221 111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHH
Q 043284 260 -VLMDGYIKLGRLTDAVKVMDEMEDNGVE-PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP---SSALCCKVIDL 334 (527)
Q Consensus 260 -~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 334 (527)
..+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133445668888888888888876532 222 22224667888888888888888877643221 12344556667
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCC-----------CC---HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCM-----------PD---NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
+...|++++|...++.+....+. |+ ...+..+...+...|+.++|+..++++....|.+...+..+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 78888888888888888765321 12 12344556677777888888888888766667777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
+..+...|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 78777888888888888877765 444 445556666677777888888888887774 35555444443333
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=3.3e-20 Score=184.57 Aligned_cols=404 Identities=11% Similarity=0.053 Sum_probs=311.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 88 LARARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
+.+..+|+.---+|....+... ..-+..-...++..+.+.|++++|+.+++...... +.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 3456667666656655544310 01133345567788889999999999999999875 455677777888888899999
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|...|+++... .+.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999876 33456778889999999999999999999998864 235678888999999999999999999988
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA 326 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (527)
...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...+++....... +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 776433 33344333 347889999999999999887643344555566677889999999999999999987533 577
Q ss_pred hHHHHHHHHHhcCCHhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVED----ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
.+..+..++...|++++ |...++++....+ .+...+..+...+...|++++|...+++.....+.+...+..+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77888999999999985 8999999998764 477888999999999999999999999997777778888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFT-YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK------TSFSLLIEGLY 475 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~ 475 (527)
++...|++++|+..++++.+. .|+... +..+..++...|+.++|+..|+++.+.. |+. .....+..++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHHHH
Confidence 999999999999999999876 455433 4445678899999999999999998743 331 23444555555
Q ss_pred hcCChhHHHHHHHHHHh-CCCCChhhHHH
Q 043284 476 ESGNEGEVGKVVSMATA-SGSVESDSWNF 503 (527)
Q Consensus 476 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 503 (527)
..+..++......++.- ....|...|+.
T Consensus 403 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 403 AVNLPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred hcCCccchhhHHHHHhcccccCChHHHHH
Confidence 66666655445555433 32456666653
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.1e-21 Score=186.43 Aligned_cols=308 Identities=15% Similarity=0.122 Sum_probs=212.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc--ChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC--GENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 122 (527)
...+..+...|++++|+..|+.+++.+| .+..++..++..+...|++++|..+++.+...++... ....+..++.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP---ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445566677888888888888877655 3566778888888888888888888888776422111 1245667777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHHcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN---VFTCNILIKALCKKD 199 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 199 (527)
.|...|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.......+. ...+..++..+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888887653 455677778888888888888888888887664221111 123455666777778
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777653 223556667777777888888888888877765332224556777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCC
Q 043284 280 EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE---EGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~ 356 (527)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++.+.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 77765 345555567777777778888888887777664 4566666666655553 4467777777777776655
Q ss_pred CCCHh
Q 043284 357 MPDNA 361 (527)
Q Consensus 357 ~~~~~ 361 (527)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 55544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=9.5e-20 Score=185.32 Aligned_cols=412 Identities=10% Similarity=-0.028 Sum_probs=313.7
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
+.++.-..-.+.+....|+.++|++++.++.... +.....+..+..++...|++++|.++|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3566667777788889999999999999998632 3356678899999999999999999999998875 566778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRG 234 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (527)
++..+...|++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Confidence 999999999999999999999876 334555 88899999999999999999999998753 25566667788888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----H
Q 043284 235 DIENAKRVFGDILDRGWVPDA------TTYTVLMDGYI-----KLGRL---TDAVKVMDEMEDN-GVEPNEV-TY----G 294 (527)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 294 (527)
..+.|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998886654 1221 11222222222 12234 7788888888854 1123221 11 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHhhHHHHHHHH
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYV-PSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP---DNAISSTIIHWL 370 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 370 (527)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|+..++.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1134456779999999999999887532 332 22235778999999999999999988754321 134456677788
Q ss_pred HHcCCHHHHHHHHHHHhcCCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIP------------S---LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
...|++++|...++.+....|+ + ...+..++..+...|++++|+++++++... .+.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 9999999999999998654432 2 234566778889999999999999999876 24457788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhh
Q 043284 436 IQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
...+...|++++|++.++++++. .|+ ...+...+..+.+.|++++|..+++.+.+..|.++.+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999985 365 5566777788999999999999999999988766544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.1e-18 Score=177.70 Aligned_cols=459 Identities=11% Similarity=-0.046 Sum_probs=308.6
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+..+..++..|...|++++|+..++++++.+| .|...+..+.. .+++++|..+++++....|... .++..+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP---~n~~~~~~La~----i~~~~kA~~~ye~l~~~~P~n~--~~~~~l 148 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP---GDARLERSLAA----IPVEVKSVTTVEELLAQQKACD--AVPTLR 148 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---ccHHHHHHHHH----hccChhHHHHHHHHHHhCCCCh--hHHHHH
Confidence 44568888999999999999999999987766 34444444322 2888888888888887755422 233222
Q ss_pred ----------------------------------------HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 121 ----------------------------------------IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 121 ----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
.+.|.+.|++++|++++.++.+.+ +.+......+...|.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLL 227 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 333444455555555555555544 233333444444444
Q ss_pred h-cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CCHHHHHHHH-----------
Q 043284 161 Q-NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PNLVTHTTIL----------- 227 (527)
Q Consensus 161 ~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~----------- 227 (527)
. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.++++++...... |+..+|.-++
T Consensus 228 q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 228 AGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 4 233 444444321 12245666778888999999999999999998765322 4433322111
Q ss_pred -------------------HHH----------------------------------------------------------
Q 043284 228 -------------------GGY---------------------------------------------------------- 230 (527)
Q Consensus 228 -------------------~~~---------------------------------------------------------- 230 (527)
..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q 381 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQ 381 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHH
Confidence 111
Q ss_pred -----HhcCChHHHHHHHHHHHHC---CC---------------------------------------------------
Q 043284 231 -----VWRGDIENAKRVFGDILDR---GW--------------------------------------------------- 251 (527)
Q Consensus 231 -----~~~~~~~~a~~~~~~~~~~---~~--------------------------------------------------- 251 (527)
.+.|+.++|.++++..... +.
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 1224455555555444321 00
Q ss_pred ----------CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 252 ----------VP--DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 252 ----------~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 11 22333444444444 6677888878777765 456554444555567899999999999998664
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
.|+...+..+..++.+.|+.++|...++...+.++ .....+..+.......|++++|...+++.....| +...|..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33444456677888999999999999999988752 2333344444455566999999999999966554 6889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 478 (527)
+..++.+.|++++|+..+++..+. .| +...++.+..++...|++++|+..++++++.. +-+...+..++.++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999986 44 46677888889999999999999999999853 225667889999999999
Q ss_pred ChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 479 NEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
++++|...++++.+..+....+...... ....+++++.+.+++....
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888755444443333 2235677777777766543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.7e-21 Score=182.85 Aligned_cols=306 Identities=15% Similarity=0.111 Sum_probs=152.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--ChhhHHHHHHHHHcCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP--NVFTCNILIKALCKKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 200 (527)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+ ....+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445555666666666665543 23344555555555555555555555555543211100 01234444444555555
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555544431 12334444444444444444444444444444321111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
....+..+...+.+.|++++|...++++.+... .+...+..+...+.+.|++++|.++++++...++....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 001223334444445555555555555544321 12334444555555555555555555555544322223
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 361 AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
.++..++.+|...|++++|...++++.... |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY-PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 344555666666666666666666664332 33344466666666667777777777666654 566666666665554
Q ss_pred c---cCCHHHHHHHHHHHHHCCCCCCHH
Q 043284 441 K---IGNAKEGIRILEEMLDKGCFPNKT 465 (527)
Q Consensus 441 ~---~g~~~~A~~~~~~~~~~~~~p~~~ 465 (527)
. .|+.++++.++++|.+.++.|++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 346666777777666655555443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=8.2e-19 Score=174.93 Aligned_cols=447 Identities=11% Similarity=0.010 Sum_probs=328.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.+......+-...++|+++.|+..|+++++..|...+ ..+ .++..+...|+.++|+..+++... +.+........
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~--av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG--QVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh--hHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHH
Confidence 3446667777889999999999999999888775322 222 778888888999999999999983 33335555556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcc
Confidence 6779999999999999999999986 566788888889999999999999999999875 556556655555555566
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhH------HHHHHHH---H--hc
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTY------TVLMDGY---I--KL 268 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~ 268 (527)
+..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-.+. +.+....+ ..+++.- . ..
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999875 236777888889999999999998776653321 11111111 1111110 0 11
Q ss_pred CC---hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 269 GR---LTDAVKVMDEMEDN-GVEPNE-V----TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 269 g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.+ .+.|+.-++.+... +..|.. . ...-.+.++...+++.++++.++.+...+......+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 34455555555541 112322 1 222345677889999999999999998876655667788899999999
Q ss_pred CHhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC------------C--CH-HHHHH
Q 043284 340 KVEDACELWKRLLRKNC-----MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI------------P--SL-LTYNT 399 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~--~~-~~~~~ 399 (527)
++++|..++..+..... .++......|..++...+++++|..+++.+....| | |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 99999999999876531 22333356788899999999999999999855322 1 11 23345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 478 (527)
++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|.+.++.+... .|+ ..+....+.++...|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhh
Confidence 6777888999999999999998762 457888888999999999999999999777664 454 456677888888999
Q ss_pred ChhHHHHHHHHHHhCCCCChhh
Q 043284 479 NEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
++++|.++.+.+.+..|.+..+
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hHHHHHHHHHHHHhhCCCchhH
Confidence 9999999999988887755543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=4.8e-18 Score=169.48 Aligned_cols=439 Identities=13% Similarity=0.062 Sum_probs=322.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
.+.+....+....+.|+++.|+..|+++.+..|..+ ..++ .++..+...|+.++|+..+++..... +........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 444555556667899999999999999998755421 1233 78888889999999999999998321 23344444456
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
..+...|++++|+++|+++.+. .+.+...+..++..+...++.++|++.++++.... |+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchH
Confidence 7889999999999999999987 33456677788899999999999999999998873 6666665555555556777
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--ccCC
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTY------GVMIEAF---C--KGKK 305 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~ 305 (527)
.+|++.++++.+.. +.+...+..+..+..+.|-...|.++..+-... ..+....+ ...++.- . ..++
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 67999999999985 447788888899999999999999887764322 11111111 1111100 0 1122
Q ss_pred H---HHHHHHHHHHHHc-CCCCCH-----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 306 S---GEARNLLDDMLQR-KYVPSS-----ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 306 ~---~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
+ +.|+.-++.+... +..|.. ......+.++...+++.++++.++.+...+.+....+-..+..+|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3 4455555555542 122322 222345667888999999999999999888665667888999999999999
Q ss_pred HHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 043284 377 WEAKKLFDEFERGS------IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV-----------EPNV---FTYNMLI 436 (527)
Q Consensus 377 ~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~ 436 (527)
++|+.++..+.... +++......|..+|...+++++|..+++++.+... .||+ ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999983322 23444467899999999999999999999987311 1221 2344567
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--Hhchhh
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDS 514 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~ 514 (527)
..+...|++.+|.+.++++.... +-|......++..+...|++.+|.+.++.+....|.+..+........ .+++..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 77899999999999999998753 347788889999999999999999999988887766555555444432 399999
Q ss_pred hHHHHHHHHhh
Q 043284 515 GAGALDELLVK 525 (527)
Q Consensus 515 a~~~~~~~l~~ 525 (527)
|+...+++++.
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888765
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.1e-19 Score=167.57 Aligned_cols=478 Identities=15% Similarity=0.090 Sum_probs=256.0
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+++.+.+-.-+.+.+..|+|..|+.+|..++...|...+++.. .+..++.+.|+.+.|+..|+++.+..|. +..++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~--~v~al 236 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPT--CVSAL 236 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChh--hHHHH
Confidence 4455566666666777888888888888888888887777533 3345667788888888888888876553 33333
Q ss_pred HHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CChhhHHHHHH
Q 043284 118 ITVIRNYGLA---GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV-PNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~ 193 (527)
..|...-... ..+..++.++...-..+ +.++.+.+.|...|...|+++.+..+...+....... .-...|..+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3333322222 23445555555554443 4556666666666666666666666666655431100 11234555666
Q ss_pred HHHcCCChHHHHHHHHhcccCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--
Q 043284 194 ALCKKDDVEGAIRVLDEMPSMGMVPNL--VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-- 269 (527)
Q Consensus 194 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 269 (527)
+|-..|++++|..+|.+..+.. ++. ..+.-+...+.+.|+.+.+...|+...+.. +.+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 6666666666666666555432 222 223345555666666666666666655542 223444444444444432
Q ss_pred --ChhHHHHHHHHHHHC-------------------------------------CCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 270 --RLTDAVKVMDEMEDN-------------------------------------GVEPNEVTYGVMIEAFCKGKKSGEAR 310 (527)
Q Consensus 270 --~~~~a~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (527)
..+.|..++.+..+. +..+.....|.+.......|++++|.
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 233344444333332 22334444455555555555555555
Q ss_pred HHHHHHHHc---CCCCCH------HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 043284 311 NLLDDMLQR---KYVPSS------ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKK 381 (527)
Q Consensus 311 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 381 (527)
..|.+.... ...++. .+-..+..++-..++.+.|.+.|..+.+..+. -...|..++......++..+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHH
Confidence 555554432 111111 11222333444444555555555555444211 12222222212222345556666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCCHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFCK------------IGNAKEG 448 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~A 448 (527)
.+..+......++..+..+...+.....+..|.+-|+...+. ...+|..+...|...|.. .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 666665545555555555555555555555555544444432 112455555445444321 2335566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
+++|.+.++.. +-|...-+.++-++...|++.+|..+|.++.+......++|-.+.. ...|++-.|.++|+..+.+
T Consensus 632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777666643 2244455566666777777777777777776666555566666666 2337777777777776653
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.7e-17 Score=150.56 Aligned_cols=460 Identities=10% Similarity=0.044 Sum_probs=323.5
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CCCCcChhhHHHHHHHH
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN---PEIKCGENLFITVIRNY 124 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 124 (527)
--+|.+..-|+.|.++++.+.+ .++.+...|..-...-..+|+.+...+++.+.... .++..+...|..=...|
T Consensus 413 wlAlarLetYenAkkvLNkaRe---~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKARE---IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3345566666677777666632 23356666666666666667666666666554432 45555666666666666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
-..|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|....+. ++-+...|...+..--..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 666777777777766666654332 346666667777777777777777777665 3335556666666656677777
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+-..+|++....- +-....|......+-..|+...|..++..+.+.... +...|-.-+.....+..++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777777653 234456666666777778888888888888777433 66777777778888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
.. .|+...|..-+...--.++.++|.+++++.++. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipL 721 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPL 721 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchH
Confidence 64 556666666666666678888888888877775 2323456677777788888888888888776654 3445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
|..+...--+.|++-+|..++++.....|.+...|...++.-.+.|+.+.|..++.+..+. ++.+...|..-|....+.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 7777777777788888888888887777788888888888888888888888888777764 455666777777666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALD 520 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~ 520 (527)
++-......+++ +.-|+.+...+...++...++++|++.|+++.+.++..-++|..++. ..+|.-++-.+++.
T Consensus 801 ~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 801 QRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 665555555544 34577778888888999999999999999999999887888888777 55688888888887
Q ss_pred HHHh
Q 043284 521 ELLV 524 (527)
Q Consensus 521 ~~l~ 524 (527)
+...
T Consensus 876 ~c~~ 879 (913)
T KOG0495|consen 876 KCET 879 (913)
T ss_pred HHhc
Confidence 7643
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3e-16 Score=138.48 Aligned_cols=437 Identities=10% Similarity=0.045 Sum_probs=322.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...|...+..-..++++..|+.+|++++..+ ..+...|..-+.+-.+..++..|..++++.+..- |.-...|...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence 356677777777778888999999999998753 3467788888888889999999999999988753 2223455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+..=-..|+...|.++|++... ..|+...|++.|+.-.+.+.++.|..+++..+-. .|++.+|.....--.+.|+
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 5555667999999999998875 4889999999999999999999999999988764 4899999888888889999
Q ss_pred hHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 043284 236 IENAKRVFGDILDR-G-WVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN--EVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 236 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
...+..+|..+++. | -..+...+.++...-.++..++.|.-+|+-..+.= +.+ ...|..+...--+-|+.....+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999888764 1 01123455566666667778899999998887762 222 3445445444445565544433
Q ss_pred H--------HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-h-hHHHH--------HHHHHHc
Q 043284 312 L--------LDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-A-ISSTI--------IHWLCKE 373 (527)
Q Consensus 312 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l--------~~~~~~~ 373 (527)
. ++.+...+ +.|-.+|...+......|+.+...++|++++..- +|-. . .+... +-.-...
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33344433 3366677777888888899999999999998764 3322 1 11111 1112356
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTL----IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
.+.+.+.++++......|....|+.-+ +..-.++.+...|.+++...+ |.-|...+|...|..-.+.++++.+.
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 788999999998877666666555444 444457788999999999888 67889999999998889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS--VESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
.+|++.++.+ +.+..+|...+..-...|+.+.|..+|+.+..+.. .....|.+.+. ...|++++|+.+++++|+.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999865 23556788888878888999999999999887664 23346888888 3349999999999999875
Q ss_pred c
Q 043284 526 N 526 (527)
Q Consensus 526 ~ 526 (527)
.
T Consensus 537 t 537 (677)
T KOG1915|consen 537 T 537 (677)
T ss_pred c
Confidence 3
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9.7e-18 Score=147.05 Aligned_cols=453 Identities=14% Similarity=0.057 Sum_probs=304.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCc--ChhhHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDT-YHSIIHKLARARAFDAVESLLTELKQNPE-IKC--GENLFITV 120 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l 120 (527)
..|++.|.......+|+..++-+++. ...||... -..+...+.+.+++.+|++.|+.++..-| +.- ...+.+.+
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivkn--kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKN--KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcc--cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 45566666677778888888877543 23344333 23456677788888899999888876522 211 12345566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----------CCChhhHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV-----------VPNVFTCN 189 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ 189 (527)
...+.+.|+++.|+..|+...+. .|+..+-..++-++...|+-++..+.|.+++...+. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66788889999999999888775 477666666666677788888888888888765432 12222222
Q ss_pred HHHH-----HHHcCC--ChHHHHHHHHhcccCCCCCCHHH-------------HHH--------HHHHHHhcCChHHHHH
Q 043284 190 ILIK-----ALCKKD--DVEGAIRVLDEMPSMGMVPNLVT-------------HTT--------ILGGYVWRGDIENAKR 241 (527)
Q Consensus 190 ~l~~-----~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~-------------~~~--------l~~~~~~~~~~~~a~~ 241 (527)
.-+. -.-+.+ +-++++-.-.++..--+.|+-.. +.- -...+.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2111 111111 11222222122222112232110 000 1124678888888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 242 VFGDILDRGWVPDATTYTVLMDGYIK--LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
++.-..+..-+.-...-+.|...+.- -.++.+|..+-+...... .-+......-.......|++++|.+.+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 88877766433333333433333333 236777777666655332 223333333333445689999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
+..-....|+ +.-.+...|+.++|++.|-++... ...+..+...+...|.-..+...|++++-+.....|.|+..+..
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 4443333343 344567789999999999887654 23477788888999999999999999999998888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLI-EGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g 478 (527)
|...|-+.|+-..|.+.+-.--.. ++-+..+...|...|....-+++++.+|+++.- ++|+..-|..++ .++.+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999998876554433 466788888899999999899999999999876 679999988665 4556789
Q ss_pred ChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 479 NEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
++++|..+++...+..|.|.+-...+.+.
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999888888877773
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.1e-15 Score=131.46 Aligned_cols=455 Identities=11% Similarity=0.067 Sum_probs=341.8
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
.++++..|+.+|++++..+. .+...|...+..-.++.....|+.+++++....| --...|..-+-.--..|++..
T Consensus 85 sq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhcccHH
Confidence 57888999999999976553 5777999999999999999999999999988633 245667766666677899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
|.++|++..+. .|+..+|.+.+..=.+.++.+.|..++++..- +.|++..|.-....-.+.|+...|..+|+...
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999876 79999999999999999999999999999885 47999999999998899999999999999876
Q ss_pred cC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHH--------HHH
Q 043284 213 SM-GM-VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD--ATTYTVLMDGYIKLGRLTDAVKV--------MDE 280 (527)
Q Consensus 213 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~ 280 (527)
+. |- .-+...+.+...--.++..++.|.-+|.-.++.- +.+ ...|..+...--+.|+.....+. |+.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 53 20 0122334444444456778999999999988873 223 45566666555566765555443 344
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-Hh-HHH--------HHHHHHhcCCHhHHHHHHHH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSS-AL-CCK--------VIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~--------l~~~~~~~~~~~~a~~~~~~ 350 (527)
+.+.+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. .. |.. .+-.-....+.+.+.++++.
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55443 457788888898888899999999999998875 34321 11 111 11122356899999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHH----HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043284 351 LLRKNCMPDNAISSTIIHWL----CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 426 (527)
.++. ++....++..+-..| .++.++..|.+++..... .-|-..++-..+..-.+.++++.+.+++++..+-+ +
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 9884 444555665554444 567899999999988854 33666788888888889999999999999999874 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 427 PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 427 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
-|..+|......-...|+.+.|..+|+-+++... .-....|...++.-...|.++.|..+++...+..+.- .+|-++.
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHH
Confidence 3667888888878889999999999999987421 1122345566666678899999999999998877533 3777766
Q ss_pred HHHH-------h-----------chhhhHHHHHHHHh
Q 043284 506 TRIV-------S-----------DLDSGAGALDELLV 524 (527)
Q Consensus 506 ~~~~-------~-----------~~~~a~~~~~~~l~ 524 (527)
.-.. + +..+|+++++++..
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6211 3 56677888877653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.9e-15 Score=140.61 Aligned_cols=368 Identities=13% Similarity=0.042 Sum_probs=279.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-..+..++.+|++++|..++..+++..| .+..+|..|+..|...|+.+++...+-.+.-..|. +...|..+....
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls 217 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Confidence 3445556678999999999999999888 47789999999999999999999988877765444 668999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChh----hHHHHHHHHHcCCC
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVF----TCNILIKALCKKDD 200 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 200 (527)
.+.|++++|.-.|.+.++.. |++...+-.-+..|-+.|+...|.+-|.++....+ +.+.. .-...++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999987 56767777788899999999999999999987622 11222 22334566777888
Q ss_pred hHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhH---------------------
Q 043284 201 VEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTY--------------------- 258 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------- 258 (527)
-+.|.+.++.....+ -.-+...++.++..+.+...++.+.............+|...|
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 899999998877632 2235567888999999999999999888877662222222211
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043284 259 -----TVLMDGYIKLGRLTDAVKVMDEMEDNGV--EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKV 331 (527)
Q Consensus 259 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (527)
-.++-++...+..+....+......... .-+...|.-+..+|.+.|++.+|+.+|..+......-+...|..+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 1233344555555555555555655553 335678888999999999999999999999987666678889999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---------CCCCCHHHHHHHHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER---------GSIPSLLTYNTLIA 402 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~ 402 (527)
..+|...|.++.|.+.|+.++... +.+...-..|...+.+.|+.++|.+.++.+.. ...|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999999875 33566667788889999999999999998631 12234444445556
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDM 420 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~ 420 (527)
.+.+.|+.++-+.+...|
T Consensus 535 ~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 667777777655444433
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.5e-15 Score=127.56 Aligned_cols=335 Identities=17% Similarity=0.234 Sum_probs=225.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
+..++.++|.+.++--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 567888899999998889999999988887777788888988887654332 2778888888888999999999999
Q ss_pred HHHhcCChhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCCCC----CHHhHHH
Q 043284 264 GYIKLGRLTDA----VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE-ARNLLDDMLQ----RKYVP----SSALCCK 330 (527)
Q Consensus 264 ~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~ 330 (527)
+..+.|+++.| .+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++.. ..+.| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999977664 5667788888999999999999988888877744 4455555543 22222 3445667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCEEGKVEDACELWKRLLRKN----CMPD---NAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~ 402 (527)
.+..|.+..+.+.|.++..-+.... +.|+ ...|..+..+.++....+.-...|+.+ .....|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 7788888888888888776654321 1122 223455666667777788888888888 4445577788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-C-------------------HHHHHH-HHHHHHHCCCC
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG-N-------------------AKEGIR-ILEEMLDKGCF 461 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~-------------------~~~A~~-~~~~~~~~~~~ 461 (527)
+....|.++-..++|..+...|..-+...-..++..+++.. . +.++.+ .-.++.. ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence 88888888888888888877664444433333333333322 1 111111 1112222 22
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CChhhHHHHHHH-----HHhchhhhHHHHHHHHh
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS--VESDSWNFLLTR-----IVSDLDSGAGALDELLV 524 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ll~~-----~~~~~~~a~~~~~~~l~ 524 (527)
......+..+..+.|.|+.++|.+++....+++. |.....++++.. ...+.-.|..+++-+++
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666678888888888888888765553 444455544431 12555566666555443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=2e-13 Score=125.69 Aligned_cols=453 Identities=11% Similarity=0.032 Sum_probs=371.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhccc--CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKF--HPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENL 116 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 116 (527)
++..+-.-+..=-++|+.+...++.++.+.. ..|+..+-..|..-...|-+.|..-.+..+........- ......+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 3455655556666789999999998877632 356778888999999999999999999888888876411 1113457
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
|..-...|.+.+.++-|+.+|...++.- +.+...|......--..|..+....+|++.... .+-....|......+-
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKW 595 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHH
Confidence 8889999999999999999999998864 566778888887777889999999999999876 4445667878888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
..|+...|..++....+.+.. +...|-..+..-..+.++++|..+|.+.... .|+...|.--+...--.+..++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 899999999999999887533 6778999999999999999999999998775 5677888777777778899999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 277 VMDEMEDNGVEPNE-VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 277 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
++++..+. -|+- ..|..+...+-+.++.+.|.+.|..-.+. ++.....|..+...-.+.|..-.|..++++..-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99998876 4554 56777888889999999999988876654 34456677777778788899999999999999887
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
+. +...|...+++-.+.|+.+.|..+..+..+..+.+...|..-|....+.++-......+++. .-|++....+
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllai 823 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAI 823 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHH
Confidence 54 88899999999999999999999999998888889999998888887777755555444433 5578888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 436 IQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
...+....++++|.+.|.+.++.+ || .++|..+...+.+.|.-++-.+++.+.....|.--..|.++-..+.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHH
Confidence 889999999999999999999864 44 5788889999999999999999999988888777777877666444
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=5.6e-14 Score=122.82 Aligned_cols=431 Identities=13% Similarity=0.146 Sum_probs=231.5
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH--hcCCch-HHHHHHHHhhhCCCCCcChhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA--RARAFD-AVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~A~~~~~~~~~~~~~~~~~~~ 116 (527)
+..+-+.|+.+ ..+|.++++.-+|+.|.+ .++..++..-..+++.-+ ...+.- .-.+.|-.+.+.... +..+
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~--e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRS--ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSS 189 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--cccc
Confidence 33455555544 578999999999999954 444555555555544333 222222 112233333322111 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
| +.|.+.+ -+|+. . +.+..++..+|.++++-...+.|.+++++.... ..+.+..+||.+|.+-.
T Consensus 190 W--------K~G~vAd--L~~E~-~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFET-L----PKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS 253 (625)
T ss_pred c--------ccccHHH--HHHhh-c----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH
Confidence 1 2333322 12222 1 445566667777777776777777777666554 33456666666665433
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN----AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
-. ...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..
T Consensus 254 ~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 254 YS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred hh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 22 225666666666666777777777777777766543 3455666666677777777777666666666553
Q ss_pred H-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHhHHHHHHHHH
Q 043284 273 D-AVKVMDEMED----NGVE----PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK----YVPS---SALCCKVIDLLC 336 (527)
Q Consensus 273 ~-a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 336 (527)
+ +..++.++.. ...+ .|...+...+..|.+..+.+-|.++-.-..... +.|+ ..-|..+..+.+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3 2333333321 1111 134445555566666666666655443332210 1111 123445556666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcC-------
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESA------- 408 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~------- 408 (527)
+....+.....|+.+.-.-.-|+..+...++++..-.|.++-..++|..+ ..+...+......++..+++.+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 66666666666766666555566666666666666666666665555554 2221222222222222222211
Q ss_pred --------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC---CHHHHHHH
Q 043284 409 --------------ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-CFP---NKTSFSLL 470 (527)
Q Consensus 409 --------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p---~~~~~~~l 470 (527)
-.+....--.+|.+. .-.....+..+-.+.+.|..++|.+++.-..+.+ -.| ......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 111111222344444 3344556666677788888888888888875432 223 33334456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
++.-.+.....+|..+++-|...+.+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 666677788888888888886665443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1e-15 Score=134.48 Aligned_cols=438 Identities=12% Similarity=0.052 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS----VRSLNT 154 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 154 (527)
..+..+..-|.......+|+..|+-+.++.-.+..-..-..+...+.+...+.+|++.++-.++.-...+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3556677777778888899999998887633222223334667778889999999999988877522222 335566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCC------------CHHH
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVP------------NLVT 222 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p------------~~~~ 222 (527)
+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|......| +...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 666788999999999999998875 7887776677777888899999999999987643222 2222
Q ss_pred HHHHHH-----HHHhc--CChHHHHHHHHHHHHCCCCCCHH-----h--------H--------HHHHHHHHhcCChhHH
Q 043284 223 HTTILG-----GYVWR--GDIENAKRVFGDILDRGWVPDAT-----T--------Y--------TVLMDGYIKLGRLTDA 274 (527)
Q Consensus 223 ~~~l~~-----~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~g~~~~a 274 (527)
.+..+. -.-+. .+.++++-.-..++.--+.|+-. + + ..-.--+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 222221 11111 11222222212222111122210 0 0 1112346788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-H-ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAF-C-KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
+++++-+.+..-+.-...-+.|-..+ . .-.++..|.++-+..+..+ ..+......-.......|++++|.+.|.+.+
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99998887653332222223332222 2 2446777777776665542 2234433333444456799999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTY 432 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 432 (527)
..+.... .....+...+-..|++++|+..|-++......+..++..+...|-...+...|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~-ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 8753322 333334556778899999999999986655578888889999999999999999999888765 56678889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH---
Q 043284 433 NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--- 509 (527)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--- 509 (527)
..|...|-+.|+-..|.+.+-+--.. ++-+..+...|...|....-+++|+.+|+++ ..-.|+..-|...+..|.
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka-aliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA-ALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH-HhcCccHHHHHHHHHHHHHhc
Confidence 99999999999999999887665443 5567888888998999999999999999997 455688889999999765
Q ss_pred hchhhhHHHHHHHHh
Q 043284 510 SDLDSGAGALDELLV 524 (527)
Q Consensus 510 ~~~~~a~~~~~~~l~ 524 (527)
|++.+|...++.+..
T Consensus 674 gnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR 688 (840)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988754
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.2e-15 Score=131.89 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=273.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
++..+.-++++|++++|++.|.+++...|. .+.-|.....+|...|+|++..+--...++..|. -...+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~--Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD--YVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH--HHHHHHHHHHH
Confidence 455677788999999999999999877663 2667888888899999999999988888886443 44567777788
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+-..|++++|+.=..-..-.+--.+..+--.+=+.+-+.+ ..++.+.+.. .+..+-|+.....+....+...-
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKE--NRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcc--cCCCCCCcHHHHHHHHhhccccc----
Confidence 8888998888754443322221112111111111221211 1222222220 12123344333333333222100
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCC---C---CCC------HHhHHHHHHHHHhcCC
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVW-RGDIENAKRVFGDILDRG---W---VPD------ATTYTVLMDGYIKLGR 270 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~---~---~~~------~~~~~~l~~~~~~~g~ 270 (527)
...+...+-+.|...-..+-..+.. ...+..|.+.+.+-.... . ..| ..+.......+.-.|+
T Consensus 266 ----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 266 ----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred ----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000000111111111111111 012333333332221110 0 011 1122222234445689
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 043284 271 LTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (527)
.-.|..-|+..++.... +...|..+..+|...++.++....|+.....+.. ++.+|..-.+...-.++++.|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887533 3333778888899999999999999999887654 677888888888889999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 043284 351 LLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-- 428 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 428 (527)
.+..++. +...|..+.-+..+.+.++++...|++.....|.-+..|+.....+..+++++.|.+.|+..++. .|+
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~ 496 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREH 496 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccc
Confidence 9887633 56667777777788999999999999998888889999999999999999999999999998865 333
Q ss_pred -----HHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 429 -----VFTY--NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 429 -----~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
...+ ..++..-.+ +++..|..+++++.+. .|.. ..+..|+..-.+.|+.++|+++|++....-
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2222 122222233 8999999999999984 4544 568899999999999999999999875443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.7e-13 Score=130.86 Aligned_cols=370 Identities=12% Similarity=0.095 Sum_probs=285.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
....+..+...|++++|.+++.++.+..|. ....|..|...|-+.|+.+++...+-..--.+ +.|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 333444455569999999999999987554 77899999999999999999999887776665 677899999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH----HHHHHHHHHHhcCCh
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV----THTTILGGYVWRGDI 236 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~ 236 (527)
+.|+++.|.-.|.+.++. -+++...+---+..|-+.|+...|.+.|.++.....+.|.. ....+++.+...++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999876 34455555566778999999999999999998875322322 233456677788888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------
Q 043284 237 ENAKRVFGDILDR-GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP--------------------------- 288 (527)
Q Consensus 237 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------------- 288 (527)
+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999888763 223455678889999999999999998888776622222
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK--YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
+... ..++-++...+..+....+.....+.+ +.-+...|..+..++.+.|.+..|+.++..+.....--+..+|..+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 123334445555555555566666655 3345678889999999999999999999999987666677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE--------KGVEPNVFTYNMLIQG 438 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~ 438 (527)
..+|...|..+.|...|+.+....|.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999998652 2334444444555667
Q ss_pred HHccCCHHHHHHHHHHHH
Q 043284 439 FCKIGNAKEGIRILEEML 456 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~ 456 (527)
+...|+.++-+.....|+
T Consensus 536 l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 788888887666555555
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.8e-13 Score=117.82 Aligned_cols=333 Identities=13% Similarity=0.011 Sum_probs=188.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
...|...+......+.+.|....|...|...... .+-.-..|..|... ..+.+.+..+...+... .....--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~---~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSEL---ITDIEILSILVVGLPSD---MHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHh---hchHHHHHHHHhcCccc---chHHHHH
Confidence 3455555555556666777788888877777654 12222333333222 22222222222111110 0011111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHc
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE--PNEVTYGVMIEAFCK 302 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 302 (527)
-+..++-.....+++.+-.......|++.+...-+....+.....|+++|+.+|+++.++.+- -|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233344455566677766666667666655555555555666667777777777777766321 144555555432211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
+. .+.++.+-.-.-.+.-+.|...+...|.-.++.++|...|++.++.++. ....|..+.+-|....+...|...
T Consensus 312 --~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 --KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred --hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1111111111101223445555666666667777777777777766533 445566666677777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
++.+....|.|...|-.++++|...+.+.-|+-+|++.... .+.|...|..|..+|.+.++.++|++.|.++...| ..
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 77776666667777777777777777777777777776654 13356667777777777777777777777776654 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+...+..|++.|-+.++.++|...+++..+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445666677777777777777666666544
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.3e-14 Score=124.17 Aligned_cols=425 Identities=11% Similarity=0.034 Sum_probs=281.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+...+.-+.+.|.+++|++.|..+.+..|. .+..|.....+|...|++++..+--.+.++.+ +.-+.++..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 344456688999999999999999987543 26788899999999999999999999998875 333667888888999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--MVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
..|++++|+.=..-..-..++. |..+ ..++.-..+.--...+.+-+. +.+ +.|+.....+....+...-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~--- 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK--- 266 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc---
Confidence 9999998875444433322222 1111 112221111111222222222 222 33555555554444321100
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHC---CCC---CC------HHHHHHHHHHHHccCC
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKL-GRLTDAVKVMDEMEDN---GVE---PN------EVTYGVMIEAFCKGKK 305 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~---~~------~~~~~~l~~~~~~~~~ 305 (527)
..+...+.+.|...-..+=..+... ..+..|.+.+.+-... ... .| ..+...-...+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000001111111111111110 1233333333322110 000 11 1122222223445788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (527)
.-.|..-|+........++ ..|..+..+|...++.++..+.|+...+.++. ++.+|..-.+.+.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988765533 33777888899999999999999999998744 777888888888889999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----C
Q 043284 386 FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-----C 460 (527)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 460 (527)
.....|.+...|..+..+..+.++++++...|++.++. ++.-+..|+.....+..+++++.|.+.|+.+++.. +
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 98888889999999999999999999999999999986 55568899999999999999999999999998732 1
Q ss_pred CCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 461 FPNKTSF--SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 461 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
..+...+ -.++..-++ +++..|..+++++.+.+|.-...+..+.. ...|+.++|.+++++.+.+
T Consensus 499 ~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1122222 122222233 89999999999999998877777777777 3349999999999997643
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.4e-13 Score=117.53 Aligned_cols=440 Identities=14% Similarity=0.086 Sum_probs=302.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH---------------hcCCchHHHHHHHHhhhC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA---------------RARAFDAVESLLTELKQN 107 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~A~~~~~~~~~~ 107 (527)
....++..++....++.|.-.++.... ....|..+...+. ....+..-...|..+.+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s-------~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~ 152 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS-------KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKP 152 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch-------HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhH
Confidence 346789999999999999988876621 1112222211111 111222222222222111
Q ss_pred -----CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 043284 108 -----PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV 182 (527)
Q Consensus 108 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (527)
.+...|...+......+.+.|..+.|+..|...+..- |..=.+|..|.... .+.+.+..+...+ +
T Consensus 153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l------~ 222 (559)
T KOG1155|consen 153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGL------P 222 (559)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcC------c
Confidence 1222244444455556677889999999998887642 33444454444433 2223222222111 1
Q ss_pred CChhh--HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHhH
Q 043284 183 PNVFT--CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW--VPDATTY 258 (527)
Q Consensus 183 ~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 258 (527)
.|... --.+..++....+.++++.-.......|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|
T Consensus 223 ~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 223 SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 12111 1224456666778899999999998888876666666666777788999999999999998842 1256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (527)
..++-. +... ..+..+.+-...--+--..|...+.+.|+-.++.++|...|+..++.+.. ....|+.+..-|...
T Consensus 303 SN~LYv--~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYV--KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHH--Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 766543 2221 11222222111101234567778888999999999999999999997644 567788889999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWD 418 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 418 (527)
++...|.+.++.+++.+ +.|-..|-.+.++|.-.+...-|+-.|++.....|.|...|.+|+.+|.+.++.++|++-|.
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999986 45889999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 419 DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD----KGCFPN--KTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+....| ..+...+..+.+.|-+.++..+|...|++.++ .|...+ .....-|...+.+.+++++|..+......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999875 34678899999999999999999999998885 233322 22333466778899999999988777655
Q ss_pred CCCCChhhHHHHHHH
Q 043284 493 SGSVESDSWNFLLTR 507 (527)
Q Consensus 493 ~~~~~~~~~~~ll~~ 507 (527)
. .+...--+.|++.
T Consensus 536 ~-~~e~eeak~LlRe 549 (559)
T KOG1155|consen 536 G-ETECEEAKALLRE 549 (559)
T ss_pred C-CchHHHHHHHHHH
Confidence 4 3444444555553
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=7.4e-14 Score=131.36 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=75.0
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWD 418 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 418 (527)
.+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+ .+++.... ++.+....++.+++++..+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHH
Confidence 3344444444444332 123445555555555666666666666655533 23333222 1222233455666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 419 DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
...+.. +-|...+..+...|.+.|++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555441 223334555555666666666666666666653 3565555566666666666666666666553
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1e-13 Score=131.17 Aligned_cols=290 Identities=9% Similarity=0.034 Sum_probs=172.2
Q ss_pred cCCChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNL-VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
..|+++.|.+.+.+..+.. |+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566777777666655542 332 2333444555666777777777766655421211223333456666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCCHhHHHHHHHHHH
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL---CEEGKVEDACELWKRLL 352 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~ 352 (527)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+...+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776654 2245566666667777777777777777776665432221111111111 22222222233444443
Q ss_pred hCCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 353 RKNC---MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTY--NTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 353 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
+..+ +.++..+..++..+...|+.++|..++++..+..+++.... ..........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 3322 13667777777788888888888888888755444444221 11222223456777788888777765 34
Q ss_pred C-H--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 428 N-V--FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 428 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+ + ....++.+.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3 45567788888888888888888854433356888888888888888888888888888753
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.4e-13 Score=129.53 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=219.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH--HHHHHHHhcCChHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT--TILGGYVWRGDIEN 238 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 238 (527)
.|+++.|.+.+...... .+++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 69999999888876543 122333 333345558899999999999999875 35544332 34668889999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|.+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998886 447788889999999999999999999999987654222 123333444444555566666
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 043284 312 LLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI 391 (527)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (527)
+++.+... .+.++.....+...+...|+.++|.+++++..+. .++... .++.+....++.+++.+..+...+..|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66666443 2447778888899999999999999999999885 345432 233344456999999999999988888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|...+..+...+...+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999976 79999999999999999999999999998865
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1e-13 Score=131.14 Aligned_cols=292 Identities=12% Similarity=0.104 Sum_probs=184.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNV-FTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
..|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 456777777777665543 3332 223334555666677777777777665542111122333345666667777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHccCCHHHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG-VMIE---AFCKGKKSGEARNLLDD 315 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~ 315 (527)
.+.++.+.+.. +-+...+..+...+...|++++|.+.++.+.+.++. +...+. .-.. .....+..++..+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777664 335566667777777777777777777777766533 222221 1111 11222223333344444
Q ss_pred HHHcCC---CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 043284 316 MLQRKY---VPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS-STIIHWLCKEGKIWEAKKLFDEFERGSI 391 (527)
Q Consensus 316 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (527)
+....+ +.+...+..+...+...|+.+.|.+.+++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 444322 136677777788888888888888888888886533221111 1111222335777888888888877777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSL--LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777 778889999999999999999999544434578888888999999999999999999998753
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=6.3e-17 Score=145.53 Aligned_cols=263 Identities=15% Similarity=0.176 Sum_probs=98.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.++.++.+.|++++|+++++....... .+.+...|..+.......++++.|...++++...++. +...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc--ccccccccccc-c
Confidence 557888888888888888865433220 1234556666666777788888888888888775433 44456666666 6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHH
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAI 205 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 205 (527)
..+++++|.++++...+. .+++..+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 788888888888776554 355666677777888888888888888887655444556777777888888888888888
Q ss_pred HHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 206 RVLDEMPSMGMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 206 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
+.+++..+.. | |......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|+.+|++..+.
T Consensus 167 ~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 8888887764 4 46667777778888888888777777776653 445566777788888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 285 GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
. +.|......+..++...|+.++|.++..+...
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp S-TT-HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccccc
Confidence 3 33667777777888888888888877766543
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.9e-13 Score=120.35 Aligned_cols=455 Identities=13% Similarity=0.024 Sum_probs=322.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC
Q 043284 34 PIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG 113 (527)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 113 (527)
...+..+..-+..+.+-+..+.++.-|.-+-+++.... -++....-+++.+.-.|++++|..++..-.- . ..+
T Consensus 9 ~~~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~----~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l-e--~~d 81 (611)
T KOG1173|consen 9 TLADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT----NDPADIYWLAQVLYLGRQYERAAHLITTYKL-E--KRD 81 (611)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc----CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh-h--hhh
Confidence 34444555667788888888999999999988884332 4556667778888888999999888876543 1 225
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH----HhcC---------CCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRI----EKFN---------VQRS-----------VRSLNTLLNALVQNKRYDLVH 169 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---------~~~~-----------~~~~~~l~~~~~~~g~~~~a~ 169 (527)
.........++.+..++++|..++... .... +.++ ...+..-...|....+.++|.
T Consensus 82 ~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 82 IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHH
Confidence 666667778888899999999988722 1100 0011 011111223455566778888
Q ss_pred HHHHHhhhcCCCCCChhhHHH---HHHHHHcC-----------------C-ChHHHHHHHHh----ccc-----------
Q 043284 170 LMFKNSRHKFKVVPNVFTCNI---LIKALCKK-----------------D-DVEGAIRVLDE----MPS----------- 213 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~-----------------~-~~~~A~~~~~~----~~~----------- 213 (527)
..|.+.... |+..|.. ++....-. + +.+.-..+|+- +..
T Consensus 162 ~~Y~~Al~~-----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 162 DKYKEALLA-----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHhc-----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 888776643 3333322 22221111 0 11111112221 100
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 214 -MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 214 -~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
.+..-+......-..-+...+++.+..++.+.+.+.. ++...++..-|.++...|+..+-..+=.++.+.- +-...+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 0112233344445556778899999999999998874 5577777777889999999998888888888763 346789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
|-.+...|...|+.++|.+.|.+....+.. -...|......++-.+..++|...+..+.+.-.. ...-+.-+..-|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHH
Confidence 999999999999999999999998775433 2346777888999999999999999888775211 22223345566888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHccCCHH
Q 043284 373 EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK--GVEPN----VFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~ 446 (527)
.++...|.+.|.+.....|.|+..++-+.......+.+.+|..+|+..... .+.+. ..+++.|..+|.+.+.++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999999999998888889999999999888999999999999987743 11222 345788999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+|+..+++.+... +-+..++..++-.|...|+++.|.+.|.++....|. ......++.
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 9999999999863 457889999999999999999999999999888754 445555555
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.8e-16 Score=142.56 Aligned_cols=261 Identities=16% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRG-WVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG 303 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (527)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555566666666666665443332 1234444444555555666666666666666654322 34445555554 566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN-CMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
+++++|.+++....+.. ++...+...+..+...++++++..+++.+.... .+.+...+..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666554432 344445555666666677777777766655432 234555666666667777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
+++.....|.|....+.++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|+.+|++..... +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 777765566666667777777777777777666666665542 3344556666777777777777777777766642 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
|+.....++.++...|+.++|.++..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55566667777777777777777666653
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.1e-12 Score=119.07 Aligned_cols=423 Identities=11% Similarity=0.042 Sum_probs=299.7
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-CC--------
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-PE-------- 109 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-------- 109 (527)
-+|..-.-+++++.-.|++++|..+...- +.. ..+..........+.+..+|++|..++...... .+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 44555667999999999999998887655 112 346777788888899999999999998832111 00
Q ss_pred --------------CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------
Q 043284 110 --------------IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN------------- 162 (527)
Q Consensus 110 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 162 (527)
......++..-...|....++++|...|.+....++ .....+..++....-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 000111111122345556678888888877765432 2222333332222111
Q ss_pred -----CCHHHHHHHHHHh----hhc-----------CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHH
Q 043284 163 -----KRYDLVHLMFKNS----RHK-----------FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVT 222 (527)
Q Consensus 163 -----g~~~~a~~~~~~~----~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 222 (527)
.+.+....+|+-. ... .+...+........+-+...+++.+..++++...+.. ++....
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 1111222233211 000 0122234445555667778899999999999988764 456667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (527)
+..-|.++...|+..+-..+=.++.+.- |..+.+|-++.-.|...|...+|.+.|.+....+. .=...|..+...|.-
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAG 358 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhh
Confidence 7777778999999988888888888873 55778999999999999999999999999876531 135789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.+..++|+..+....+.-. -..--+..+..-|.+.++.+.|.+.|..+.... +.|+.+.+.+.-.....+.+.+|..+
T Consensus 359 e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred cchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHH
Confidence 9999999999988776311 111222334556788999999999999998874 55888888888888888999999999
Q ss_pred HHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 383 FDEFER---GSIP----SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 383 ~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
|+.... ...+ -..+++.|+.+|.+.+.+++|+..+++.... .+.+..++.++.-.|...|+++.|++.|.+.
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 998732 1111 2345889999999999999999999999876 3557889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q 043284 456 LDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 456 ~~~~~~p~~~~~~~l~~~~ 474 (527)
+- +.|+..+...++..+
T Consensus 516 L~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 516 LA--LKPDNIFISELLKLA 532 (611)
T ss_pred Hh--cCCccHHHHHHHHHH
Confidence 87 568887766666533
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=3.2e-11 Score=111.23 Aligned_cols=468 Identities=14% Similarity=0.140 Sum_probs=287.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
|..+-..+..+..||++..-+..|++++..-|- ..-...|-..+......+-.+.+..++++.++.. +..-..-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHH
Confidence 345556666777888888888888888765542 2233467777777888888888888888888753 3345566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCCC--hhhHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKF------NVQRSVRSLNTLLNALVQNKRY---DLVHLMFKNSRHKFKVVPN--VFTCN 189 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~--~~~~~ 189 (527)
+..+...+++++|-+.+...+.. ..+.+...|..+.+..+++-+. -....+++.+..+ -+| ...|+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWC 252 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHH
Confidence 77778888888888888776543 1244556666666666654322 2334455555544 223 45789
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHH
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----------------G------DIENAKRVFGDIL 247 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~ 247 (527)
+|.+.|++.|.+++|.++|++.... ..+...|..+...|+.- | +++-.+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999987664 23444555555554421 1 1233334444444
Q ss_pred HCCC-----------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHH
Q 043284 248 DRGW-----------VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN------EVTYGVMIEAFCKGKKSGEAR 310 (527)
Q Consensus 248 ~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~ 310 (527)
.... +.+...|..-.. ...|+..+-...|.++.+. +.|. ...|..+...|-..|+.+.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 3321 112333333222 2345666777777776653 2221 246777888888899999999
Q ss_pred HHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-----------------CHhhHHHHHHHH
Q 043284 311 NLLDDMLQRKYVPS---SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP-----------------DNAISSTIIHWL 370 (527)
Q Consensus 311 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~ 370 (527)
.+|++..+...+.- ..+|......-.+..+++.|+++.+.+......| +..+|...+...
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99988877543321 3455555666667788888888888765432111 122344445555
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc---cCCHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV-FTYNMLIQGFCK---IGNAK 446 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~ 446 (527)
-..|-++....+++++......++......+..+-.+.-++++.+++++-+..=..|+. ..|+..+..+.+ ....+
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 56677888888888884433344444444455555667788888888776654223443 356655554432 33578
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ChhhHHHHHHHHH---hchhhhHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTS--FSLLIEGLYESGNEGEVGKVVSMATASGSV--ESDSWNFLLTRIV---SDLDSGAGAL 519 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~ll~~~~---~~~~~a~~~~ 519 (527)
.|..+|+++++ |++|...- |......--+-|....|.++++++...-.+ --..|+.++.... | ....+..+
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHH
Confidence 88888888888 56665422 333333334558888888888887665542 2235676666332 3 33445555
Q ss_pred HHHHh
Q 043284 520 DELLV 524 (527)
Q Consensus 520 ~~~l~ 524 (527)
+++++
T Consensus 646 ekaIe 650 (835)
T KOG2047|consen 646 EKAIE 650 (835)
T ss_pred HHHHH
Confidence 55554
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.2e-13 Score=113.95 Aligned_cols=290 Identities=13% Similarity=0.159 Sum_probs=173.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh--hHHHHHHHHHhcCChh
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN--LFITVIRNYGLAGRPE 131 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 131 (527)
..+.++|...|-.+++.+| .+.++...++..+.+.|..+.|+.+.+.+.+.+....+.. +...+.+-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 5667777777777766554 3555666777777777777777777777776533322222 3345666677777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHHcCCChHHHHHHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN---VFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
.|.++|..+.+.+ .--..+...++..|-...+|++|++.-+++.+..+.+.+ ...|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777776643 344556667777777777777777777766554222222 223555555666666777777777
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043284 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (527)
.+..+.+. ..+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+. .+
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 77666532 1333444556666777777777777777776654444455666667777777777777777766665 23
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHHHHHHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE---GKVEDACELWKRLL 352 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 352 (527)
+...-..+........-.+.|..++.+-+.. .|+...+..++...... |...+....+..|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333344444444444455555555444443 46666666666554432 23444444444444
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.1e-12 Score=111.50 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=173.1
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
.|+|.+|+++..+-.+. +. .....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-...+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 46666666666664433 11 12333444455555666666666666666654223444555555566666677777776
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 043284 242 VFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMIEAFCKGKKSGEARNLLD 314 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 314 (527)
-+.++.+.+. -++.......++|.+.|++.....+..++.+.|.-.+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666666642 35556666666777777777777777777666544332 344445544444444444444444
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH
Q 043284 315 DMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL 394 (527)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (527)
..... .+.++..-..++.-+.+.|+.++|.++..+..+++..+.. ...-.+.+-++...-.+..+...+..+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 44332 2334555556666677777777777777777776554441 112234455666666666666655566666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777777777766644 67777777777777777777777777776663
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.6e-12 Score=109.89 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=115.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE----VTYGVMIEAFC 301 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 301 (527)
|..-|...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+.. ..|-.+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 4444555555555555555555432 112334445555555555555555555555554333221 22333444444
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 043284 302 KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKK 381 (527)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 381 (527)
...+.+.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.++..-+.+...+..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455566666666666554332 2333334555566666666666666666666554445555566666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK---IGNAKEGIRILEEML 456 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 456 (527)
.+..+.... +....-..+........-.+.|..++.+-... .|+...+..++..... .|...+....++.|+
T Consensus 271 fL~~~~~~~-~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 271 FLRRAMETN-TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHcc-CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 666653211 22223333333333344445555555444433 5666666666665432 333455555566665
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-13 Score=128.08 Aligned_cols=202 Identities=13% Similarity=0.032 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
...+|-++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..++. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 3445555555555555555555555554443211 3344444444444455555555555555443211 2233334445
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
.|.+.++++.|+-.|+++....|.+.+....++..+.+.|+.++|+++++++.... +.|+..-...+..+...+++++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHH
Confidence 55555555555555555555455555555555555555555555555555555432 11233333334444445555555
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 449 IRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+..++++.+ +.|+. ..+..++..|.+.|+.+.|..-|.-|...+|
T Consensus 577 l~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 577 LQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555555555 23332 3345555555555555555555555555544
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.3e-11 Score=102.54 Aligned_cols=436 Identities=10% Similarity=0.038 Sum_probs=246.1
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
+.-+....++..|+.+++.....+.. ....+-.-+..++...|++++|...++.+.+. ..++...+..+..++.-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHH
Confidence 44556788999999999987533222 22223334556677899999999999998874 334677888888888889
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV 207 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 207 (527)
|.+.+|..+-.+.. .++-....++....+.|+-++-..+-+.+... ..---+|.....-.-.+.+|+++
T Consensus 105 g~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999998877653 33334445556666777777766666555432 23333455555555668889999
Q ss_pred HHhcccCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 208 LDEMPSMGMVPNLVTHTT-ILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
+......+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++...|..+....+.=.-..|.+-...+.+.+-
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 98887653 44444443 334666777788888888777765 233344444433333332111222222222222110
Q ss_pred --------------------------CC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 287 --------------------------EP-----NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 287 --------------------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
-| =...-..++-.|.+.++..+|..+.+++.. . ++.-|..-.-..
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVF 326 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHH
Confidence 00 011222344456677777777776665422 1 222222222222
Q ss_pred HhcCC-------HhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 336 CEEGK-------VEDACELWKRLLRKNCMPDN-AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 336 ~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
+..|+ ..-|.+.|+-.-..+..-|. .--..+...+.-..++++.+..+..++.-...|-..--.++++++..
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh
Confidence 23222 33344444444333322222 12233444444555677777777776443333322233467777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS-FSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 485 (527)
|++.+|.++|-++....++ |..+| ..|.++|.+.+.++.|..++-++-. +.+..+ +..+++.|.+.|.+=-|.+
T Consensus 407 gny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred cChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776644333 34444 4455677777777777666544322 122222 3345566777787777777
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHh
Q 043284 486 VVSMATASGSVESDSWNFLLTRIVS 510 (527)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ll~~~~~ 510 (527)
.|+.+...+ |+++.|..--++|.|
T Consensus 483 AFd~lE~lD-P~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 483 AFDELEILD-PTPENWEGKRGACAG 506 (557)
T ss_pred hhhHHHccC-CCccccCCccchHHH
Confidence 777764444 566677655554443
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=1e-10 Score=108.30 Aligned_cols=433 Identities=16% Similarity=0.080 Sum_probs=292.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
++..+. +...+++...++..+.+++..|. -.++....+-.+...|+-++|..........+.- +...|..+.-.
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLL 84 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHH
Confidence 334443 44678999999999999886554 3345565666677889999999999988875332 66678888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+....++++|++.|+.....+ +.|...+.-+.-.-++.|+++........+.+. .+..-..|..++.++.-.|+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999987 677788887777778888888777766666553 23345678888889999999999
Q ss_pred HHHHHHhcccCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 204 AIRVLDEMPSMG-MVPNLVTHTTILG------GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 204 A~~~~~~~~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
|..+++...+.. -.|+...+..... .....|..+.|++.+..-... +......-..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999887764 2456655543322 345678888888877665443 11122233445677889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFC-KGKKSGEAR-NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
++..+... .||...|...+..+. +-.+.-++. .+|....+.-.. .......-+......+-.+..-+++....+.
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 99999987 567766665554443 343444444 556555443111 1111111122222223344555667777777
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH---hcC------------CCCCHHHHH--HHHHHHHhcCCHHHHHHHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF---ERG------------SIPSLLTYN--TLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~------------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~ 417 (527)
|+++ ++..+...|-.-...+-.+++...+ ..+ .+|....|. .++..+-..|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7553 3333443332222111111111111 111 256666554 5677888999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 418 DDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 418 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+..+++ .|+ ...|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..++++.++|.++.....+.+.
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 999976 666 3456566678899999999999999999864 24544444677778899999999999999888774
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.4e-13 Score=125.85 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043284 164 RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--MVPNLVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
+..+|...|..+... +.........+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567888888886554 33334555667888888999999999998887652 11256677777655422 22222
Q ss_pred HH-HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 242 VF-GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
.+ +.+++.. +..+.+|.++.++|.-+++.+.|++.|++.... .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 3333332 446789999999999999999999999998876 34 6788888888888889999999999988765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
+.. +-..|.-+...|.++++++.|+-.|+++...++. +......+...+.+.|+.++|+.+++++....+.|+..--.
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 433 3345556778889999999999999999887644 66777778888889999999999999997777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
.+..+...+++++|+..++++.+. .|+ ...|..+...|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778888889999999999999876 454 5567777888999999999999998888754
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=5.9e-10 Score=103.12 Aligned_cols=432 Identities=10% Similarity=0.102 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..|...++.+.++|+....+..|.+++..-|+.....+|...+......|-++-++.++++.++. ++..-...+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 48888899999999999999999999987777777789999999888999999999999999964 44457778899
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC-----CCCChhhHHHHHHHHHcCCCh---HHHHHHHHhcccCCCCCCH--HHHHHHHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFK-----VVPNVFTCNILIKALCKKDDV---EGAIRVLDEMPSMGMVPNL--VTHTTILG 228 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 228 (527)
++..+++++|.+.+..+..+.. .+.+-..|.-+.+..++.-+. -....+++.+... -+|. ..|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 9999999999999988764311 133455677776666655432 2344455555543 2453 47899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----------------C------ChhHHHHHHHHHHHCCC
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL----------------G------RLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~~ 286 (527)
.|.+.|.+++|..+|++.+..- .+..-|..+.+.|+.. | +++-.+.-|+.+...+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999988762 2333444444444321 1 12223333444333210
Q ss_pred -----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 287 -----------EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP------SSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 287 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
+-++..|..-... ..|+..+....+.+..+. +.| -...|..+...|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1123333333332 256677777777777653 222 13457778889999999999999999
Q ss_pred HHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CC------CCHHHHHHHHHHHHhcC
Q 043284 350 RLLRKNCMPD---NAISSTIIHWLCKEGKIWEAKKLFDEFERG------------SI------PSLLTYNTLIAGMCESA 408 (527)
Q Consensus 350 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~------~~~~~~~~l~~~~~~~~ 408 (527)
+..+...+-- ..+|..-...-.+..+++.|.++.+..... .+ .+...|..++..--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654322 334555556666778899999988876221 11 13344666666666778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChhHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYE---SGNEGEVG 484 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~ 484 (527)
-++....+++++.+..+. ++.........+-...-++++.++|++-+..-..|+. ..|+..+.-+.+ .-+.+.|+
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 889999999999987654 2222222233334555678888888877765334554 345555444433 24689999
Q ss_pred HHHHHHHhCCCCChhhHHHHHH-H---HHhchhhhHHHHHHH
Q 043284 485 KVVSMATASGSVESDSWNFLLT-R---IVSDLDSGAGALDEL 522 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~-~---~~~~~~~a~~~~~~~ 522 (527)
.+|+++.+..||...-.-.|+. . .+|-...|..+++++
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999866644433333332 2 236666777777664
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=2.8e-10 Score=105.39 Aligned_cols=437 Identities=11% Similarity=0.015 Sum_probs=295.1
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+..+.+....+-.+...|+-++|.......++.++ .+..-|..++-.+....++++|+++|..++...+. +..++
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qil 112 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQIL 112 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCc---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHH
Confidence 34556676777778889999999999999987665 46778999988888899999999999999997555 78888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH------
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL------ 191 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------ 191 (527)
..+.-.-++.|+++.......++.+.. +.....|..++.++.-.|+...|..+++...+.....|+...+...
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 888888899999999999999988864 4556678888899999999999999999988764434565554332
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTV-LMDGYIKLG 269 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g 269 (527)
.....+.|..+.|++.+..-... + .|.. .-..-...+.+.++.++|..++..++.. .||..-|.. +..++.+..
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHh
Confidence 23455778888888888765442 1 1222 2334456778899999999999999988 455555544 445554444
Q ss_pred ChhHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 270 RLTDAV-KVMDEMEDNGVEPNEVTYGVM-IEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 270 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
+.-+++ .+|....+. .|....-..+ +......+-.+..-+++....+.|+++ ++..+...|-.....+-..++
T Consensus 268 d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~L 342 (700)
T KOG1156|consen 268 DMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKL 342 (700)
T ss_pred hhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHH
Confidence 444444 666666544 2222221111 112222233344556677777777654 233333333322222211122
Q ss_pred HHHHHh----CC----------CCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 348 WKRLLR----KN----------CMPDN--AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 348 ~~~~~~----~~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
...+.. .| -+|.+ +++..++..+-..|+++.|...++......|.-+..|..=++.+...|+++
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChH
Confidence 111111 11 13343 344556778889999999999999997766666677877788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCH----HHHHH--HHHHHHhcCChhHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF--PNK----TSFSL--LIEGLYESGNEGEV 483 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~----~~~~~--l~~~~~~~g~~~~A 483 (527)
+|..++++..+.. .+|...=.-.+....+.+..++|.++.....+.|.. -+. -.|-. =+.+|.+.|++-.|
T Consensus 423 eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 423 EAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 9999999998763 244443335666778889999999999988877641 011 11222 24667788888777
Q ss_pred HHHHHHH
Q 043284 484 GKVVSMA 490 (527)
Q Consensus 484 ~~~~~~~ 490 (527)
++-|..+
T Consensus 502 LKkfh~i 508 (700)
T KOG1156|consen 502 LKKFHEI 508 (700)
T ss_pred HHHHhhH
Confidence 7655543
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-11 Score=114.08 Aligned_cols=444 Identities=14% Similarity=0.048 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhccc--CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKF--HPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.....+...+.-..+.+++.-..-.+++. ...+.-++..|..+.-++...|+++.+.+.|++.... .--....|..
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~ 362 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQ 362 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHH
Confidence 33344444555556666665443222211 1122336667777777777888888888888877653 2224567777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCC---CCChhhHHHHHHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQR-SVRSLNTLLNALVQ-NKRYDLVHLMFKNSRHKFKV---VPNVFTCNILIKA 194 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~ 194 (527)
+...+...|.-..|+.+++........| +...+...-..|.+ .+..++++..-.+.....+. .-....|..+.-+
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 7777777888888888887765543223 33333333344433 35555555555444431111 1123344444444
Q ss_pred HHcC-----------CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 195 LCKK-----------DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 195 ~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
|... ....++++.+++..+.+.. |....-.+.--|+..++.+.|.+..++.++.+...+...|..+.-
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4321 2345677777777665422 333322333345667778888888888887765667778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------------------------
Q 043284 264 GYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR------------------------ 319 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 319 (527)
++...+++.+|+.+.+.....- ..|-.....-+..-...++.++++.....++..
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 8888888888888877665431 011111111122223345555555544433320
Q ss_pred ----CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CCC------HhhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043284 320 ----KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC--MPD------NAISSTIIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 320 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
...-...++..+.......+........ +.+... .|+ ...|......+.+.++.++|...+.+..
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0000111222221111111000000000 111101 111 1233445566777788888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCCCCH
Q 043284 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIR--ILEEMLDKGCFPNK 464 (527)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~ 464 (527)
...+-....|......+...|+.++|.+.|...... .|+ +.....+...+.+.|+..-|.. ++..+++.+ +.+.
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~ 754 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNH 754 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCH
Confidence 766667777777777788888888888888777754 554 4566777778888887776666 888888754 2356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 465 TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
..|..++..+.+.|+.++|.+.|..+.....
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7788888888888888888888888776654
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=6.1e-11 Score=103.57 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=228.5
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
-.|+|.+|++...+..+.+-. ....|..-..+.-+.|+.+.+-.++.++.+.-..++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998887643 3456666777888899999999999999887445667777788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCCHhHHHHHHH
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA-------LCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
-++++.+.+. .+.........+|.+.|++.....++..+.+.+.-.+.. ++..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998763 367888999999999999999999999999988766553 45555555556666666667777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043284 350 RLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429 (527)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 429 (527)
...+. .+.++..-..++.-+.++|+.++|.++..+..+... |.. -...-.+.+-++.+.-++..++-... .+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-Chh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 76554 345677777888999999999999999988843222 222 22233456678888888888776654 23355
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
..+..|...|.+.+.|.+|.+.|+..++. .|+..++..++.++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77889999999999999999999988884 599999999999999999999999999987643
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.1e-11 Score=102.71 Aligned_cols=435 Identities=10% Similarity=0.070 Sum_probs=264.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
++..+++.|++++|...++.+... ..++.+.+..+.-+..-.|.+.+|..+-.++.+. +--...+...-.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~------pL~~RLlfhlahk 133 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT------PLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH
Confidence 566778999999999999998542 2367778888887888889999999998877652 2222334444456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH-HHHHHHcCCChHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI-LIKALCKKDDVEGAI 205 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~ 205 (527)
.|+-++-....+.+.+. .+--.++.......-.+++|+++++++... .|+-...|. +.-+|.+..-++-+.
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 67766666665555432 233345555555566789999999998764 455555554 344667888888888
Q ss_pred HHHHhcccCCCCCC-HHHHHHHHHHHHh--cCCh---------------------------------HHHHHHHHHHHHC
Q 043284 206 RVLDEMPSMGMVPN-LVTHTTILGGYVW--RGDI---------------------------------ENAKRVFGDILDR 249 (527)
Q Consensus 206 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~--~~~~---------------------------------~~a~~~~~~~~~~ 249 (527)
++++..... -|| +...|.......+ .|+. +.|++++--+.+.
T Consensus 206 evl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 888776654 233 3333333222222 1211 2222222222221
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCC
Q 043284 250 GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK-------KSGEARNLLDDMLQRKYV 322 (527)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~ 322 (527)
-+..-..|+-.|.+.+++.+|..+.+++.- .+..-|..-.-.....| ...-|.+.|+-.-+++..
T Consensus 284 ----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 284 ----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred ----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 112233455567889999999998877652 23333322222233333 234555656555444433
Q ss_pred CCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH-HH
Q 043284 323 PSS-ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN-TL 400 (527)
Q Consensus 323 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l 400 (527)
-|. .--..+..++.-..++++.+.+++.+...-...|.. ...+.++++..|++.+|+++|-.+......|..+|. .+
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 222 223345666677788999999999888764443444 445889999999999999999998654445666665 56
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
+++|.+.++++.|..++-++. -+.+..+. ..+..-|.+.+.+--|-+.|..+... .|++..|. |+
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GK 500 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GK 500 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------Cc
Confidence 788999999999988776553 22333333 34446788899998899999888764 57777664 33
Q ss_pred hhHHHHHHHHHHhCCC--CChhhHHHHHHHHH----hchhhhHHHHHHHH
Q 043284 480 EGEVGKVVSMATASGS--VESDSWNFLLTRIV----SDLDSGAGALDELL 523 (527)
Q Consensus 480 ~~~A~~~~~~~~~~~~--~~~~~~~~ll~~~~----~~~~~a~~~~~~~l 523 (527)
--...-+|..+..... ........++..+. .+.|--.++..+..
T Consensus 501 RGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 501 RGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred cchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344445555433322 22334444444332 34444444444443
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.3e-10 Score=102.52 Aligned_cols=451 Identities=13% Similarity=0.063 Sum_probs=267.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.-+..+..+|++++|.+...+++...| .+..++..-+.++.+.++|++|+.+.+.-... ..+...+..-+-+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p---dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP---DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC---CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHH
Confidence 345556678999999999999976544 57778888888999999999999777655431 111122122233445
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH-cCCChHHH
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC-KKDDVEGA 204 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 204 (527)
+.++.++|+..++-+. +.+..+...-...+.+.|++++|..+|+.+.+. +...+...+.+-+ ..+.--.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-----~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-----NSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHhhhH
Confidence 7899999999998332 344557777788899999999999999999765 2222322222111 11111111
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHHCCC-------C------CCH-HhHHHHHHHHHh
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILG---GYVWRGDIENAKRVFGDILDRGW-------V------PDA-TTYTVLMDGYIK 267 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~------~~~-~~~~~l~~~~~~ 267 (527)
. +.+.... .| ..+|..+.+ .+...|++.+|+++++...+.+. . -.. .+-..+...+-.
T Consensus 162 ~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 2332222 23 334544443 45678999999999998833210 0 001 122345566778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHH-HHHHHHHHHHHcCCCC---------CHHhHHHHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTY----GVMIEAFCKGKKSG-EARNLLDDMLQRKYVP---------SSALCCKVID 333 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~---------~~~~~~~l~~ 333 (527)
.|+.++|..+|....+... +|.... |.++..-....-++ .++..++......... ....+....-
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988753 344222 22222211111111 1222222221110000 0011111111
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCH
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC--KEGKIWEAKKLFDEFERGSIPS-LLTYNTLIAGMCESAEL 410 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 410 (527)
...-.+..+.+.++..... +..|.. .+..++.... +......+..++.....+.+.+ ..+.-.+++.....|++
T Consensus 316 L~l~tnk~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 1112233344444433322 122332 3333333322 2234777888888886666655 56667778888999999
Q ss_pred HHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHh
Q 043284 411 TEAGRLWD--------DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK---GC--FP-NKTSFSLLIEGLYE 476 (527)
Q Consensus 411 ~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~ 476 (527)
+.|++++. .+.+.+..| .+...++..+.+.++.+.|..++.+++.. .. .+ -..++..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 555444444 34455666677777777777777766631 00 11 12334455555567
Q ss_pred cCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH-hchhhhHHHHHHH
Q 043284 477 SGNEGEVGKVVSMATASGSVESDSWNFLLTRIV-SDLDSGAGALDEL 522 (527)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~~~~~~ 522 (527)
.|+.++|...++++.+..++|..+...+...+. -|.++|+.+..++
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 799999999999999999999999988888654 7888888887765
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.3e-09 Score=103.61 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=148.2
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
..++...|++++|++.++.. ...+..........+..+.+.|++++|..+|..+.++.|. +..-|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~---~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN---EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh---hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhh
Confidence 44556667777777776654 2222233445555666666667777777777766665332 333444444444222
Q ss_pred -----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 128 -----GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD-LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 128 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.+.+...++++++...- |...+...+.-.+..-..+. .+...+..+..+ |++ .+|+.+-..|....+.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcChhHH
Confidence 23455566666665542 33222222222222212232 222333333333 322 2444454455444444
Q ss_pred HHHHHHHHhcccC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043284 202 EGAIRVLDEMPSM----G----------MVPNLV--THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265 (527)
Q Consensus 202 ~~A~~~~~~~~~~----~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (527)
.-..+++...... + -.|+.. ++..+...|...|++++|++++++.++.. +..+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 4444444433211 1 112222 33444555666666666666666666653 22355666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh--------HHHHHHHHHh
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL--------CCKVIDLLCE 337 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 337 (527)
-+.|++++|.+.++.....+.. |...-+.....+.+.|+.++|.+++......+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655422 555555566666666666666666666655443222111 1223455666
Q ss_pred cCCHhHHHHHHHHHHh
Q 043284 338 EGKVEDACELWKRLLR 353 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~ 353 (527)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666665554
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.5e-09 Score=93.00 Aligned_cols=300 Identities=13% Similarity=0.020 Sum_probs=219.2
Q ss_pred CCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
.++...|...+-.+.... ++-|+.....+..++...|+.++|...|++..-.++ -+..........+...|+.++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHH
Confidence 444444444443333322 344677888899999999999999999998876531 122333333445567888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (527)
+...+.... .-....|-.-+.......++..|+.+-++..+.+.. +...+..-..++...++.++|.-.|+.+....
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 888776542 124455555556666788899999988888876543 45556556677888899999999999888764
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 043284 357 MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLI-AGMCE-SAELTEAGRLWDDMVEKGVEPN-VFTYN 433 (527)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 433 (527)
+.+...|..++..|...|.+.+|...-+......+.+..+...+. ..+.. ...-++|.+++++.... .|+ ....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 347788999999999999999998888877555666777766653 33332 23457888888887754 666 34566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
.+...|...|..+.++.++++.+. ..||....+.|++.+...+.+++|.+.|..+.+.+|.+..+...+-
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 777788899999999999999887 4689999999999999999999999999999998887665555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=8.8e-12 Score=122.67 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=111.2
Q ss_pred CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 93 AFDAVESLLTELKQNPEIKCGENLFITVIRNYG---------LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163 (527)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (527)
++++|..+|+++.+..|. +...|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 355555555555554333 3334444433332 1233556666666666554 345555555556666666
Q ss_pred CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043284 164 RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVF 243 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (527)
++++|...|++.... .+.+...+..+...+...|++++|+..+++..+.+.. +...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 666666666666554 1223445555566666666666666666666554321 1122222333344556666666666
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 244 GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
+++++...+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 66655432223444555556666666666666666665443 222 233334444445444 355555555443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.1e-11 Score=108.98 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+...|++++|...++++++..| .+...+..++..+...|++++|.+.+++..+..+. +...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Confidence 44567788888888999999999988876655 35667788888888888888888888888875433 45567777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+++.... .+.+...+..+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 7788888888888888888776421 223345555666677777777777777776654 1223445556666666666
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
++++|...+++..... +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666665541 23444455555555566666666666555443
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=1.6e-11 Score=107.96 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.++++.+..|. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 445666666667777777777777766654332 44556666666667777777777777666654 344555666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
.+...|++++|...+++.............+..+...+...|++++|...+++...... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 66666777777766666654311122233444455555556666666666655554321 13344555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555544 12234444444455555555555555554443
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=4.5e-11 Score=117.71 Aligned_cols=245 Identities=12% Similarity=-0.002 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 270 RLTDAVKVMDEMEDNGVEP-NEVTYGVMIEAFC---------KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
++++|...|++..+.. | +...|..+..++. ..+++++|...+++..+.++. +...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 3556667777666552 3 2334444443332 223456677777776665433 4555556666666677
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDD 419 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (527)
++++|...++++.+.++ .+...+..+...+...|++++|...+++.....|.+...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777766652 24555666666677777777777777776554444444433444445556677777777776
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--
Q 043284 420 MVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT-SFSLLIEGLYESGNEGEVGKVVSMATASGS-- 495 (527)
Q Consensus 420 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 495 (527)
+.+.. .| +...+..+..++...|+.++|...++++... .|+.. ....+...|...| ++|...++.+.+...
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 65542 23 3344555666666677777777777665542 23332 2344444555555 355555555444322
Q ss_pred CChhhHHHHHHHHHhchhhhHHHHHHHHh
Q 043284 496 VESDSWNFLLTRIVSDLDSGAGALDELLV 524 (527)
Q Consensus 496 ~~~~~~~~ll~~~~~~~~~a~~~~~~~l~ 524 (527)
+....+..++..++|+.+.+... +++.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 33334555556666666665555 44433
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.9e-09 Score=91.58 Aligned_cols=402 Identities=11% Similarity=-0.010 Sum_probs=263.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.--+..+..|...++-+.|+.......... ..+..-..+...+-+.++-.++.--+.......|. .-.....++
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~----r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~--aL~~i~~ll 171 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL----RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM--ALQVIEALL 171 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc----cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch--HHHHHHHHH
Confidence 445778888889999999999988774322 22222222222333333333333333333332332 111222222
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ--NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
..-. .| +...-..|-....++.......-+.+++. .++...+...+-.+....-++.|+.....+...+...|
T Consensus 172 ~l~v-~g----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 172 ELGV-NG----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHhh-cc----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2111 11 11111222222233433333333333333 34444444444333333236678888999999999999
Q ss_pred ChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNL-VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVM 278 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (527)
+.++|+..|++....+ |+. .......-.+.+.|+++....+...+.... +.....|..-+......++++.|+.+-
T Consensus 247 dn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred CchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999887653 332 222223334567888888888888777652 224445555556666788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 043284 279 DEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP 358 (527)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (527)
++.++.. +.+...+..-...+...+++++|.-.|+...... +.+...|.-++.+|...|.+.+|.-.-+...+. .+.
T Consensus 324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 9988764 3356666666778889999999999999887642 236788999999999999999999888777664 233
Q ss_pred CHhhHHHHH-HHHH-HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043284 359 DNAISSTII-HWLC-KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLI 436 (527)
Q Consensus 359 ~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 436 (527)
+..+...+. ..+. ....-++|.+++++.....|.-....+.+...+...|..+.++.++++.... .||....+.|.
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lg 478 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLG 478 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHH
Confidence 444444332 2221 2223578999999987777777888889999999999999999999998865 78999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNK 464 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 464 (527)
+.+...+.+++|.+.|..++.. .|+.
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 9999999999999999999984 4654
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.2e-11 Score=104.82 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=193.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
-+.+.++|.+.|.+.+|.+.++...+. .|-+.||..+-+.|.+..++..|+.++.+-++. ++.++....-..+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999988876 677888999999999999999999999988875 33455555667788888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
.++.+.|.++|+...+.. +.++.....+...|.-.++++-|.+.++++......++..|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999998875 4466777777778888899999999999997766678899999999999999999999999
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 418 DDMVEKGVEPN--VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 418 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
++.....-.|+ ...|..+.......||+..|.+.|+-++..+ .-+...++.|.-.-.+.|+.++|..+++.+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 98887644454 4567778888888999999999999998764 22557788888888899999999999998866554
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=104.66 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTY-GVMIEAFCK 302 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 302 (527)
+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+.+.|+.++.+-.+. .|..+|| .-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44455555555555555555554444 334444555555555555555555555544443 2222222 223344444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.++.++|.++++...+... .++.....+...|.-.++++.|+.+|.++.+.|.. ++..|+.+..+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 5555555555555544321 13333333344444455555555555555555533 444555555555555555555555
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 383 FDEFERGSI-P--SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 383 ~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|++...... | -...|-.+.......|++..|.+-|+-....+ ......++.|.-.-.+.|+.++|..+++.+.+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555421111 1 22344445554455555555555555444331 11234455554444555555555555555444
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=7.3e-09 Score=98.22 Aligned_cols=406 Identities=14% Similarity=0.034 Sum_probs=265.6
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL 191 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (527)
.+..+|..+.-+....|+++.+-+.|++....- -...+.|..+...+...|.-..|..+++........+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 467788888888888999999999999887643 3556778888888999999889999888876552223344444444
Q ss_pred HHHHHc-CCChHHHHHHHHhcccC--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCH
Q 043284 192 IKALCK-KDDVEGAIRVLDEMPSM--GM--VPNLVTHTTILGGYVWR-----------GDIENAKRVFGDILDRGWVPDA 255 (527)
Q Consensus 192 ~~~~~~-~~~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 255 (527)
-..|.+ .+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 444543 46677777766665552 11 12234455454444421 1245677888888777533 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
...-.+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....-.. |......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhh
Confidence 4444455567788899999999999988765668899999999999999999999998887663111 111111112222
Q ss_pred HhcCCHhHHHHHHHHHHhC----------------------------CCCCCHhhHHHHHHHHHHcC---CHHHHHHHHH
Q 043284 336 CEEGKVEDACELWKRLLRK----------------------------NCMPDNAISSTIIHWLCKEG---KIWEAKKLFD 384 (527)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~ 384 (527)
...++.+++......+... .....+.++..+.......+ ..+.. +.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cC
Confidence 2345555554443332211 00001111111111111000 01111 11
Q ss_pred HHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 385 EFERGSIPS------LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 385 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
.......|+ ...|......+.+.++.++|...+.+.... .+.....|......+...|.+.+|.+.|..++..
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 110011122 234556677788889999999888887754 2345666777777888899999999999999884
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhhc
Q 043284 459 GCFPN-KTSFSLLIEGLYESGNEGEVGK--VVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVKN 526 (527)
Q Consensus 459 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~~ 526 (527)
.|+ ..+...++.++.+.|+..-|.. ++..+.+.++.+...|..+.... .|+.++|..-+..+++++
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 465 4678999999999998888877 99999999999999999998844 499999999999988875
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.2e-09 Score=95.27 Aligned_cols=401 Identities=15% Similarity=0.089 Sum_probs=243.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-+...+..|+++.|+..|..++..+| +|...|..-..++...|+|++|.+=-.+..+..|. ....|.....++
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~--w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD--WAKGYSRKGAAL 80 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc--hhhHHHHhHHHH
Confidence 3456677889999999999999998888 48889999999999999999999888887776554 556888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCC--CCCChhhHHHHHHHHHc--
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL---VHLMFKNSRHKFK--VVPNVFTCNILIKALCK-- 197 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-- 197 (527)
.-.|++++|+..|.+-++.. +.+...+..+..++........ --.++..+..... .......|..++..+-+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999999875 4556667777776621100000 0011111110000 00001112222222111
Q ss_pred --------CCChHHHHHHHHhc-----ccC-------CCCC---------C-------------HHHHHHHHHHHHhcCC
Q 043284 198 --------KDDVEGAIRVLDEM-----PSM-------GMVP---------N-------------LVTHTTILGGYVWRGD 235 (527)
Q Consensus 198 --------~~~~~~A~~~~~~~-----~~~-------~~~p---------~-------------~~~~~~l~~~~~~~~~ 235 (527)
-..+..+.-.+... ... +..| . ..-...+.+...+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 01111111111110 000 0011 0 0123445666667777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCCHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVM-------IEAFCKGKKSGE 308 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~ 308 (527)
++.+++-+...++.. .+..-++....+|...|.+..+...-....+.|-. ....|+.+ ..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 778888777777664 35556666777777777777777766666555422 22223332 234555667777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++..|.+.+.....|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|...|.++..
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 77777776554333222 223333444444444433332221 11112225566778888889888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
..|.|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++....++++|.+.|.+.++.+ |+..-+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~ 462 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA 462 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 77888888888888888888888888888877766 444 3344444555566678888888888888754 555444
Q ss_pred H
Q 043284 468 S 468 (527)
Q Consensus 468 ~ 468 (527)
.
T Consensus 463 ~ 463 (539)
T KOG0548|consen 463 I 463 (539)
T ss_pred H
Confidence 3
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.4e-08 Score=93.34 Aligned_cols=422 Identities=11% Similarity=0.067 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
......-+..+...|++++|.+...++....| .+...+..-+.++++.++|++|+.+.+.-... ..+...+..-+-
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHH
Confidence 34555556677788999999999999988643 36667777888889999999999666544321 111111123344
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCC
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGD 235 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~ 235 (527)
+..+.+..|+|+..++.... .+..+...-...+.+.|++++|+++|+.+.+.+.. +.. .-..++.+-.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a---- 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA---- 157 (652)
T ss_pred HHHHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----
Confidence 55678999999998884322 24446666677888999999999999999876532 221 1111211111
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHH---HHHHHHhcCChhHHHHHHHHHHHCC-------CCCCH-------HHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTV---LMDGYIKLGRLTDAVKVMDEMEDNG-------VEPNE-------VTYGVMIE 298 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~ 298 (527)
.-.+. .+......| ..+|.. ..-.+...|++.+|+++++...+.+ -.-+. ..-..+..
T Consensus 158 ~l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 158 ALQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred hhhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 01111 122221122 223333 3445678899999999999883211 01011 12233555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCH-h-HHHHHHHHHHhCC-----------CCCCHh
Q 043284 299 AFCKGKKSGEARNLLDDMLQRKYVPSSALC----CKVIDLLCEEGKV-E-DACELWKRLLRKN-----------CMPDNA 361 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~-----------~~~~~~ 361 (527)
.+-..|+..+|.+++..++..+.. |.... +.++ +.....++ + .++..++...... -.-...
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677899999999999999887543 33221 2222 22222221 1 1222222211110 000111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC--ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF 439 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 439 (527)
.-+.++..| .+..+.+.++-..... ..|.. .+..++.... +...+.++..++....+....-...+...++...
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~-~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPG-MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCc-cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 112233333 2334444444444322 22222 3333443332 2235778888888887652222244555666778
Q ss_pred HccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CChhhHHHHHH--
Q 043284 440 CKIGNAKEGIRILE--------EMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS---VESDSWNFLLT-- 506 (527)
Q Consensus 440 ~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ll~-- 506 (527)
...|+++.|++++. ...+.+. .+.+...+...+.+.++.+.|..++..+...-. +.......++.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 89999999999999 5555443 344555666778888887777777777654322 22233333333
Q ss_pred ----HHHhchhhhHHHHHHHHhhc
Q 043284 507 ----RIVSDLDSGAGALDELLVKN 526 (527)
Q Consensus 507 ----~~~~~~~~a~~~~~~~l~~~ 526 (527)
..+|+.+.|...++++++.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC
Confidence 23499999999999998854
No 75
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=2.3e-09 Score=102.89 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=159.3
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
-|+..+|.+++..|+..|+.+.|- +|..|... ..+.+...+..++......++.+.+. .|...+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDty 86 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK------------EPLADTY 86 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC------------CCchhHH
Confidence 466799999999999999999998 88888432 33455567778877777777776544 4467789
Q ss_pred HHHHHHHHhcCChhH---HHHHHHHHH----hcCCCCC-HH-------------HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 118 ITVIRNYGLAGRPEL---AVKTFLRIE----KFNVQRS-VR-------------SLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~~~-~~-------------~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
..+..+|...|+... +.+.++.+. ..|+... .. .-...+....-.|-++.+++++..+.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998655 222222211 1121100 00 01122333344455555555555544
Q ss_pred hcCCCCCChhhHHHHHHHHHc-CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043284 177 HKFKVVPNVFTCNILIKALCK-KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA 255 (527)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (527)
......|... +++-+.. ...+++-..+.....+ .|+..+|..++.+-..+|+.+.|..++.+|.+.|++.+.
T Consensus 167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3211111111 2333322 2334444444444444 378899999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (527)
+-|-.|+-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 766666544 78888888888889999999999998888877777554
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=1.8e-09 Score=102.71 Aligned_cols=260 Identities=18% Similarity=0.200 Sum_probs=134.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKA 194 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~ 194 (527)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+..+ .|+... |..+..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHH
Confidence 3334445566778888888887665543 2333455566777777778888888888777766 344333 3444444
Q ss_pred HHc-----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043284 195 LCK-----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI-ENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 195 ~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (527)
..- ..+.+...++++++...- |.......+.-.+.....+ ..+...+..++..|+| .+|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 321 124556666666665543 3333333332222221222 2344455555666644 3455555555544
Q ss_pred CChhHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043284 269 GRLTDAVKVMDEMEDN----G----------VEPNE--VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI 332 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (527)
...+-..+++...... + -+|+. .++..+...|...|++++|++++++.+++.+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 4444444444443321 0 01222 22333444555555555555555555554221 244455555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 333 DLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
..+-+.|++.+|.+.++.+...+.. |..+-+..+..+.++|++++|..++..+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 5555555555555555555555422 4444445555555555555555555555
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=7e-10 Score=100.01 Aligned_cols=220 Identities=12% Similarity=-0.038 Sum_probs=157.8
Q ss_pred CChhHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 55 QNLDLALQIFHYAGKFHPNFSH-NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
++.+.++..+.+++...+-.++ ....|..++..+...|++++|...|+++.+..|. +...|..+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 4678888888888754332122 2567888899999999999999999999987554 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
++.|++..+.. +.+..++..+..++...|++++|.+.|+..... .|+..........+...++.++|.+.|.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999875 456778888999999999999999999998875 44432222222334557789999999976553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR---GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
.. .|+...+ .......|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2232222 2223345555444 344444422 11 1133578888888999999999999999988765
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=8.2e-10 Score=89.44 Aligned_cols=196 Identities=15% Similarity=0.032 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-.|+-.|.++|++..|.+-++++++.+|. +..+|..+...|.+.|+.+.|.+.|+++.+..|. +..+.+.....+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--ccchhhhhhHHH
Confidence 44555666666777776666666666553 4556666666666666666666666666665333 444556666666
Q ss_pred HhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 125 GLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+..|++++|...|++....- ......+|..+.-+..+.|+++.|...|++.... .+........+.....+.|++..
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 66666666666666665431 1122345555555556666666666666665543 22233444555555555666666
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
|...++.....+. ++..+.-..++.-...|+.+.+.+.=.++.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655555443 4555555555555555555555554444443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=7.8e-10 Score=103.87 Aligned_cols=129 Identities=18% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh----cCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFE----RGSI----PSLLTYNTLIAGMCESAELTEAGRLWDDMVEK------GVEP- 427 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p- 427 (527)
++.+...+...+++++|..+++... .... .-..+++.|...|...|++++|.+++++++.. +..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 3445555666677777777666551 1111 12457888999999999999999999887643 1122
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLD----KGCF-PNK-TSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
....++.+...|.+.+++.+|.++|.+... .|.. |+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 245677888888888888888888887763 2321 333 468889999999999999999888865
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=7.7e-10 Score=89.58 Aligned_cols=209 Identities=12% Similarity=0.028 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
+...+...|...|++..|..-++++++.+|. +..+|..+...|-+.|..+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4566677899999999999999999997665 66688899999999999999999999999986 67788999999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
|..|++++|...|++.........-..+|..+.-+..+.|+++.|.+.|++.++... -...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 999999999999999988765555677899999999999999999999999988752 2456777888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGV 295 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (527)
...++.....+. ++..+.-..++.-...|+.+.+-++=..+.+. -|...-+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 999999988865 78899888999999999999998887777765 455554443
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=6.4e-10 Score=100.27 Aligned_cols=198 Identities=14% Similarity=0.049 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+.+.|++++|+..|+++++.+|+ ++.+|..++..+...|++++|...|+++.+..|. +...+..+.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg 139 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 34677888889999999999999999988874 6889999999999999999999999999987554 567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.++...|++++|++.|++..+.+ +.+.. .......+...+++++|...|.+.... ..|+...+ .+. ....|+.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHH--HHHccCC
Confidence 99999999999999999999875 23332 222222344567899999999776543 23333222 233 2334555
Q ss_pred HHHHHHHHhcc---cCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 202 EGAIRVLDEMP---SMGMV---PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 202 ~~A~~~~~~~~---~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
..+ +.+..+. +..+. .....|..+...+.+.|++++|...|++.++.+++
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 443 2333333 22111 12457889999999999999999999999987533
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=1e-10 Score=109.69 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDR----GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGV-EP 288 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~ 288 (527)
.+++.+...|...|++++|.++++.++.. +. .-....++.+...|.+.+.+++|.++|.+... .|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 35666666666666666666666655432 11 11123455566666666666666666655332 221 12
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 289 -NEVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 289 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
...+|..|...|.+.|+++.|.++.+.+.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23566667777777777777777666654
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.33 E-value=6.8e-09 Score=100.98 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=104.0
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.|..|+..|..-.+..+|.+.|+.+...++ .+.+++......++...+++.|..+.-...+..+...-...|....-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA---TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 355677777777777778888877766665 36667777777777777777777775555444333223334444555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCCh
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDV 201 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 201 (527)
.|.+.++...|+.-|+...... |.|...|..++.+|.+.|++..|.+.|++...- .|+... --...-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhH
Confidence 6667777777777777777665 566777778888888888888888888776543 343221 11111223456677
Q ss_pred HHHHHHHHhcc
Q 043284 202 EGAIRVLDEMP 212 (527)
Q Consensus 202 ~~A~~~~~~~~ 212 (527)
.+|++.+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77776666554
No 84
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=2.3e-10 Score=109.51 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 135 KTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|..+ +.+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 34555566667777777777777777777777666 66666544 44455666666666666666655554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHH
Q 043284 215 GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED-NGVEPNEVTY 293 (527)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 293 (527)
.|...+|..+..+|...||... ++..++ ....+...+...|.-..-..++..+.- .+.-||..+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 3566677777777777776554 222222 111223344455554444444444321 112233322
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 043284 294 GVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE 373 (527)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (527)
.+......|-++.+++++..+...... . .+..+++-+... ..-..++........-.+++.++..++..-...
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 222233345555555555443221111 0 111112222221 122223332222221146666677777766677
Q ss_pred CCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 374 GKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 374 ~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
|+.+.|..++..| .++.+.+..-|-.++.+ .++..-+..++.-|.+.|+.|+..|+...+-.+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777777777 44555555444444443 55666666666667777777777776666655555333
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=2.1e-08 Score=94.13 Aligned_cols=199 Identities=11% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|+.+.+.+.+....+..+......+........+...|++++|.+.++++.+..|. +...+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-hHH
Confidence 4455556666677777666666665444432222223333344555667777777777777664332 3223221 112
Q ss_pred HH----hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 124 YG----LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 124 ~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+. ..|..+.+.+.+..... ..+........+...+...|++++|...+++.... .+.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 22 23444444444443111 11222333444555666777777777777777654 2334555666667777777
Q ss_pred ChHHHHHHHHhcccCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGM-VPNL--VTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777776655421 1222 2344566666777777777777777643
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.3e-08 Score=85.67 Aligned_cols=195 Identities=12% Similarity=0.012 Sum_probs=137.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH-HHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI-TVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~ 122 (527)
+..++..+.+..++++|++++..-....| .+......+..+|....++..|-.+++++....| ...-|. --..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P---~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP---ELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh---HHHHHHHHHHH
Confidence 45666677889999999999887755444 3667788889999999999999999999988644 222222 3345
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL--NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.+-+.+.+..|+.+...|.+. ++...-..-+ ......+++..+..+.++.... .+..+.+...-...+.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheeecccc
Confidence 667889999999999888752 2222211112 2233567888888888877632 244455555555678899
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
++.|.+-|+...+-+---....|+..+ +..+.|+++.|++...+++++|++
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999999887753333456777655 445778999999999999888764
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.1e-08 Score=87.70 Aligned_cols=402 Identities=13% Similarity=0.057 Sum_probs=242.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
..+....|+++.|+.+|......+|. +...|..-..+|+..|++++|++=-.+..+.+ |.=...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence 44566789999999999999987554 88889999999999999999999888888765 3447789999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH---HHHHHhcccC---CCCCCHHHHHHHHHHHHhc-----
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA---IRVLDEMPSM---GMVPNLVTHTTILGGYVWR----- 233 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~----- 233 (527)
+++|+..|.+-.+. .+.|...++.+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999998876 445677777787777211100000 0011111110 0000112233333322111
Q ss_pred --CChHHHHHHHHHHHHC--------C-------CCC---------C-------------HHhHHHHHHHHHhcCChhHH
Q 043284 234 --GDIENAKRVFGDILDR--------G-------WVP---------D-------------ATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 234 --~~~~~a~~~~~~~~~~--------~-------~~~---------~-------------~~~~~~l~~~~~~~g~~~~a 274 (527)
.+.....+....+... + ..| . ..-...+.+...+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111122211111110 0 011 0 01124455666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH-------HHHHHHHHhcCCHhHHHHH
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC-------CKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~ 347 (527)
++.+....+.. -+..-++....+|...|.+......-....+.|.. ...-| ..+..++.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777776653 34444555666677777766666655555444322 11112 2233355556677777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 348 WKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
|.+.......|+. ..+....+++....+......+.-..-.-.-...+.+.|++..|+..|.+++... +-
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7776554333221 1222334444444444322111112222233566778889999999999988774 44
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
|...|....-+|.+.|.+..|+.-.+..++. .|+. ..|..=+.++....++++|.+.|+++.+.++.+......+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 5777888888889999999988888888875 3544 446666777777788999999999888877655544444333
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.3e-09 Score=99.95 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+...+..+.+.|++.+|.-.|+.+++.+| .+.++|..|+......++-..|+..++++.+.+|. +..+...|.
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLA 360 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALA 360 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHH
Confidence 3445678888999999999999999999888 48889999999999999999999999999998665 778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL---------NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
..|...|.-..|+..++......+ +-. |.... ..+.....+....++|-++....+..+|......|.
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p-~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKP-KYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCc-cch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 999999999999999998876531 110 00000 111122234455566666665545456777777777
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCh
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD-ATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 271 (527)
-.|--.|++++|++.|+..+... +-|...||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence 77778888888888888777654 235667888888888888888888888888776 333 44555666677788888
Q ss_pred hHHHHHHHHHH
Q 043284 272 TDAVKVMDEME 282 (527)
Q Consensus 272 ~~a~~~~~~~~ 282 (527)
++|.+.|-..+
T Consensus 515 kEA~~hlL~AL 525 (579)
T KOG1125|consen 515 KEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.5e-08 Score=83.10 Aligned_cols=402 Identities=12% Similarity=0.117 Sum_probs=252.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLN-TLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~ 158 (527)
-+...+..+.+..++..|++++..-.++.|- +......+.-+|-...++..|-+.++++... .|...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3566666778888999999999988876443 6667778888999999999999999999875 34444433 34577
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH--HHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK--ALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
+.+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 78899999999999888642 22222111222 2346789999999999988643 555666666667799999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CH-------------
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-------------NE------------- 290 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~------------- 290 (527)
+.|.+-|+...+-+--.....|+.. -++.+.|+++.|++...++.++|++. |+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 9999999999886544345566644 45667899999999999998876532 11
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 291 --VTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 291 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
..+|.-...+.+.++++.|.+-+..|..+ ....|+.|...+.-. -..+++-....-+.-+...++ ....++..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 11222223456778888888888877542 223455555443322 223556666666666666654 4567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 368 HWLCKEGKIWEAKKLFDEFERG--SIPSLLTYNTLIAGMC-ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
..|++..-++-|..++.+-... .-.+...|+. +.++. -.-..+++.+-++.+... +...-.....-++--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 8999998899888888764211 0123334443 33333 345667776665554322 00000001111111111222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHH
Q 043284 445 ---AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWN 502 (527)
Q Consensus 445 ---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (527)
...+++-+++.++. -..+..+-...|++..++..+.+.|....+-. .+.++|.
T Consensus 396 d~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC-~ehd~Wk 451 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC-NDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhh-cccceee
Confidence 12233334443332 12233444566788899999999998865443 4445554
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=1.7e-07 Score=80.72 Aligned_cols=317 Identities=12% Similarity=0.048 Sum_probs=199.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 155 (527)
+..-...+...+...|++..|+.-|..+.+.+|. +-.++..-...|...|+...|+.-+.+.++. .||.. +...-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445566677777777777777777777764322 3334444556677777777777777777764 45532 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
...+.++|+++.|..-|+.+... .|+..+ ..+|.+-+.... ........+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~---~~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH---EPSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc---CCCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCCc
Confidence 45666777777777777777654 332111 011111110000 01112223344556777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
...|++....+++.. +-|...+..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777763 4466777777778888888877777666665543 23556666666677777777777777777
Q ss_pred HHHcCCCCCHHh----HHH---------HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHHcCCHHHH
Q 043284 316 MLQRKYVPSSAL----CCK---------VIDLLCEEGKVEDACELWKRLLRKNCMPDNA---ISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 316 ~~~~~~~~~~~~----~~~---------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 379 (527)
.++.+ ||... |.. -+......++|.++++..+...+..+..... .+..+-.++...|++.+|
T Consensus 249 CLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 76643 33221 111 1223345677888888888887765442222 234455666777889999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
++...++....+.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99988888777778899999999999999999999999988876
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=9.7e-08 Score=93.25 Aligned_cols=457 Identities=10% Similarity=-0.017 Sum_probs=274.7
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
..+...|...|-++++.++.+.| .|..++..|+...+...|.+.|+.+.+.++. +..........|++..+++.|
T Consensus 471 rK~~~~al~ali~alrld~~~ap---af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAP---AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHH
Confidence 45588899999999888876555 8999999999888999999999999987554 777888999999999999999
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 134 VKTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
..+.-..-+... ..-...|....-.|...++...+...|+..... .+.|...|..++.+|...|.+..|+++|.+..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 999544433210 111233444556677888999999999888764 34478899999999999999999999999887
Q ss_pred cCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH--
Q 043284 213 SMGMVPNLVTHTTIL--GGYVWRGDIENAKRVFGDILDR------GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME-- 282 (527)
Q Consensus 213 ~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 282 (527)
... |+. +|.... -.-+..|.+.++...+...+.. +...-..++..+...+.-.|-..++.+++++..
T Consensus 624 ~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 624 LLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 753 332 333222 2345689999999988877643 111123344444444444454444555444432
Q ss_pred -----HCCCCCCHHHHHHHHHHHH---ccC--CHH-HHHHH-HHHHHHcCCCC--------------------CHHhHHH
Q 043284 283 -----DNGVEPNEVTYGVMIEAFC---KGK--KSG-EARNL-LDDMLQRKYVP--------------------SSALCCK 330 (527)
Q Consensus 283 -----~~~~~~~~~~~~~l~~~~~---~~~--~~~-~a~~~-~~~~~~~~~~~--------------------~~~~~~~ 330 (527)
......+...|..+..+|. ... -+. ....+ +.+....+.-+ +..+|..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 2211123333333322221 111 000 00011 11111111111 1222333
Q ss_pred HHHHHHh-------c-CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCE-------E-GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
++..|.+ . .+...|+..+...++.. ..+..+++.|.-. ...|++.-+.-.|-+.....+....+|..+..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccce
Confidence 3322222 1 12235666666666543 2355566665544 56677777777777776666677888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhc
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEML----DKGCFPNKTSFSLLIEGLYES 477 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~ 477 (527)
.+.+..+++-|...|...+.. .|+ ...|..........|+.-++..+|..-- ..|-.|+..-+..........
T Consensus 859 L~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 888888999999988888754 443 4455544444456677777777776522 223344444443333344455
Q ss_pred CChhHHHHHHH----------HHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHh
Q 043284 478 GNEGEVGKVVS----------MATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLV 524 (527)
Q Consensus 478 g~~~~A~~~~~----------~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~ 524 (527)
|+.++-+...+ ......+.+...|..... ...+.++.|...+.+++.
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55554443333 333344444444544444 223666777777666543
No 92
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.8e-11 Score=75.99 Aligned_cols=49 Identities=45% Similarity=1.040 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2e-11 Score=76.70 Aligned_cols=49 Identities=33% Similarity=0.610 Sum_probs=26.8
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 043284 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (527)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=8.2e-08 Score=82.54 Aligned_cols=199 Identities=16% Similarity=0.033 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh-hHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN-LFITV 120 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l 120 (527)
.-...++..+...|++..|+.-|..++..+| .+-.++......|...|+-.-|+.-+.++++..| +-. .-..-
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cHHHHHHHh
Confidence 3456789999999999999999999977665 3666777788899999999999999999998633 322 22234
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRS--VRS------------LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
...+.++|.+++|..-|+.+++.+.... ... ....+..+...|+...|+.++..+.+. .+-+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence 5567899999999999999998752111 111 122233444556667777777666654 233566
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
.+..-..+|...|++..|+.-++...+..- -++.++-.+-..+...|+.+.++...++.++.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 666666777777777777666665544321 24445555556666667777777666666665
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.8e-07 Score=87.87 Aligned_cols=66 Identities=11% Similarity=-0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
...+..+...+...|+.+.+.+.+.+..+..+...+. .........+...|++++|.+.+++..+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555566666555555554432222221 11112233344556666666666665554
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=3.8e-07 Score=97.00 Aligned_cols=376 Identities=11% Similarity=0.035 Sum_probs=234.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+......+...|++.+|...+..+... ..-..............|+++.+..+++.+.......++.........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 4455566677888888888766655331 1111222333445566788888877777653221122233334455566
Q ss_pred HhcCCHHHHHHHHHHhhhcCCC-----CCC--hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH----HHHHHHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKV-----VPN--VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL----VTHTTILG 228 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~ 228 (527)
...|+++++..++......... .+. ......+...+...|++++|...++.....-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7789999999888876543111 111 112223344566789999999999887653111121 23455666
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDR----GW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVE--P-NEVTYGVM 296 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 296 (527)
.+...|++++|...+.+.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777899999999999887653 11 111234556677888899999999998876542 211 1 12334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHh--h--HHHH
Q 043284 297 IEAFCKGKKSGEARNLLDDMLQRK--YVP--SSALCCKVIDLLCEEGKVEDACELWKRLLRKN--CMPDNA--I--SSTI 366 (527)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l 366 (527)
...+...|++++|...+.+..... ..+ ....+..+.......|+++.|...+..+.... ...... . ....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 666777899999999988875521 111 23334445667788899999999888875421 111110 0 0112
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSL----LTYNTLIAGMCESAELTEAGRLWDDMVEK----GVEPN-VFTYNMLIQ 437 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~ 437 (527)
+..+...|+.+.|...+........... ..+..+..++...|++++|..++++.... |...+ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2445567899999999877643221111 12456777888899999999999887653 32222 245666777
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 043284 438 GFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~ 458 (527)
++...|+.++|...+.++++.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999864
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=8.2e-07 Score=84.18 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=149.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE 308 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (527)
.+...|+++.|...|-+.. +....+.+......+.+|+.+++.+.... .-..-|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 3444555555555443321 22234455667788888998888887663 234456777888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
|.++|.+. ..+...+..|.+.|+|+.|.++-.+.. |+......|..-..-+-+.|++.+|++++-.+..
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 99888653 234556788899999999988877664 3344455565666667788888888887765522
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFS 468 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (527)
|+. .+..|-+.|..+..+++.++-... .-..|...+..-+-..|+...|.+.|-++.+ |.
T Consensus 853 ---p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~k 912 (1636)
T KOG3616|consen 853 ---PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FK 912 (1636)
T ss_pred ---chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HH
Confidence 332 467788888888888877654321 1234566677778888999999988876654 45
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 043284 469 LLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~ 489 (527)
.-++.|..++.|++|.++-+.
T Consensus 913 aavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhc
Confidence 566778888888888876654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=5.2e-09 Score=92.83 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=77.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--c--CC
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE--S--AE 409 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--~~ 409 (527)
++...|+++.|++++... .+.......+..|.+.++++.|.+.++.+.+....++ ...++.++.. . +.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHhCchh
Confidence 344455566555554331 2344445555666666666666666666644332222 2222222221 2 24
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNE-GEVGKVVS 488 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 488 (527)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.+ +-+..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66666666666543 34556666666666666666666666666665433 12344555566666666665 44555666
Q ss_pred HHHhCC
Q 043284 489 MATASG 494 (527)
Q Consensus 489 ~~~~~~ 494 (527)
++....
T Consensus 261 qL~~~~ 266 (290)
T PF04733_consen 261 QLKQSN 266 (290)
T ss_dssp HCHHHT
T ss_pred HHHHhC
Confidence 655443
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=8.8e-07 Score=85.02 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=187.9
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-------CcChhhHHHHHHHH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-------KCGENLFITVIRNY 124 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 124 (527)
..-|+.+.|.+-.+.+ .+...|..+...|.+.++++-|.-.+-.|....+. ..+...-..+...-
T Consensus 739 vtiG~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3568888888887777 35669999999999999999887666544332110 00112222344445
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
...|..++|+.+|++.++. ..+-..|...|.+++|.++-+.--. +. --.||......+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHH
Confidence 6789999999999998874 3455677788999999987754321 11 234566666667778889999
Q ss_pred HHHHHhcccCC-------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043284 205 IRVLDEMPSMG-------------------MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265 (527)
Q Consensus 205 ~~~~~~~~~~~-------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (527)
++.|++..... -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 98887653210 011222233333333344555555555544332 33455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----------
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL---------- 335 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------- 335 (527)
+-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+... |...|+.|
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 5667777776665542 2566667788888888888888888876543 22222222
Q ss_pred ---Hhc--CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH---------HHhc--CCCCCHHHHHH
Q 043284 336 ---CEE--GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFD---------EFER--GSIPSLLTYNT 399 (527)
Q Consensus 336 ---~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------~~~~--~~~~~~~~~~~ 399 (527)
... .+.-.|-.+|++. |. -+...+..|.+.|.+.+|+++-- .+.+ ....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 111 2222333344432 11 12234455777777777766532 2211 12246777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
....++...++++|..++-...
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 7777777778888777765443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.8e-06 Score=91.95 Aligned_cols=339 Identities=13% Similarity=0.038 Sum_probs=215.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--C----CCCH--HHHHHHHH
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--M----VPNL--VTHTTILG 228 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~p~~--~~~~~l~~ 228 (527)
..+...|+++.+..+++.+.... ...+..........+...|+++++...+......- . .+.. .....+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 44556788888888777663220 11122233444555667899999999888764321 0 1111 12223344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDA----TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV---EP--NEVTYGVMIEA 299 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 299 (527)
.+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.....- .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566899999999999998764211121 2345566677889999999999988764311 11 12344556677
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQR----KYV--P-SSALCCKVIDLLCEEGKVEDACELWKRLLRK----NCMPDNAISSTIIH 368 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 368 (527)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876552 211 1 1223444566677789999999998887653 11112334445666
Q ss_pred HHHHcCCHHHHHHHHHHHhcC--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERG--SIPSLLTY-----NTLIAGMCESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQG 438 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~ 438 (527)
.+...|+++.|...++..... .......+ ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 788899999999998887221 11111111 11224445578999999998776542111111 113456677
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 439 FCKIGNAKEGIRILEEMLDK----GCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+...+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 88999999999999998752 32222 245667788899999999999999999887653
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1.2e-06 Score=83.14 Aligned_cols=389 Identities=16% Similarity=0.117 Sum_probs=218.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-..++.|.+.|.+..|...-.. +.....|......+..++.+..-+++|-.+|+++.. +...+.+|
T Consensus 619 laaiqlyika~~p~~a~~~a~n----~~~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~f 684 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALN----DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECF 684 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcC----HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHH
Confidence 3455666666666655443210 111223555566666666666666666666666543 11233444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLN-TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
-+-.-+-+|+++-+-.- |..+.... .-..-+...|+++.|..-|-+.. .....+.+......|.+
T Consensus 685 kkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhh
Confidence 33334555555443321 22222211 22344556677777776664432 12234556667788888
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++..+.+|.+.|++++|.++-++...
T Consensus 751 ai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~ 819 (1636)
T KOG3616|consen 751 AISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG 819 (1636)
T ss_pred hHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC
Confidence 998888887653 23445777888888899999998888543 2455677888899999999888776653
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043284 284 NGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS 363 (527)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (527)
.......|..-..-+-..|++.+|.+++-.+.. |+. .+..|-+.|..+..+++.++-.... -..+.
T Consensus 820 --~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~ 885 (1636)
T KOG3616|consen 820 --PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTH 885 (1636)
T ss_pred --chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHH
Confidence 244556666666667778888888777654422 332 3667777777777777766543221 22344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHcCCCCCH--
Q 043284 364 STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDM------------VEKGVEPNV-- 429 (527)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~p~~-- 429 (527)
..+..-|...|+...|+..|-+... |..-+..|-..+-+++|.++-+.- -...+--+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 4556666667777777766655421 233333444444444444333211 000000010
Q ss_pred H------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 430 F------TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 430 ~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
. ....-++..+..+-++-|.++-+-..+.. .|. +...+...+...|++++|-+.+-++.+.+.-+
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 0 01122233345556666666655554432 122 23345556778899999999888888776533
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5e-08 Score=89.81 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=184.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE 308 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (527)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +-+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4568899999999999988885 3478889999999999999999999999998874 2367788888888999999999
Q ss_pred HHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 043284 309 ARNLLDDMLQRKYVPSS-------ALCCKVIDLLCEEGKVEDACELWKRLLR-KNCMPDNAISSTIIHWLCKEGKIWEAK 380 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (527)
|...++..+...++--. ..+.. -..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999988664321000 00000 0011111223344455555444 444578888889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-
Q 043284 381 KLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDK- 458 (527)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 458 (527)
..|+.+....|.|..+||.|...+....+.++|+.-|++..+. .|+ +.+...|.-+|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999998888889999999999999999999999999999975 776 334555666789999999999998887742
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043284 459 --------GCFPNKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 459 --------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
+..++...|..|-.++.-.++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111223456666666666666654443
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=3.3e-08 Score=86.61 Aligned_cols=192 Identities=6% Similarity=-0.118 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hh
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NL 116 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~ 116 (527)
...+..+..++..+...|++++|...|+.+++..|+.+....++..++.++...|++++|...++++.+..|..+.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44556678889999999999999999999988777544344678889999999999999999999998875543332 24
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 117 FITVIRNYGLA--------GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 117 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
+..+..++... |++++|.+.|+++.+.. +.+...+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~---------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L---------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H---------HHHH
Confidence 55556666554 78899999999998764 233333322211100 0000 0 0011
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM--VPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
..+...+.+.|++.+|+..++....... +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888888888888888776531 123467778888888888888888888877665
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=4.5e-08 Score=86.90 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
......+.++.+.++++.|.+.++.|.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444444444444
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=1.7e-07 Score=94.81 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=122.3
Q ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC---cChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 63 IFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK---CGENLFITVIRNYGLAGRPELAVKTFLR 139 (527)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 139 (527)
-|++.+..+|+ +...|...+......++.++|++++++++..-... --..+|.+++..-...|.-+...++|++
T Consensus 1446 DferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34444444443 34456666666666667777777777666541100 0123455555555555666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC
Q 043284 140 IEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN 219 (527)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 219 (527)
+.+.. .....|..|...|.+.+.+++|.++|+.|.++++ .....|...+..+.++++-+.|..++.+.++. .|.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk 1596 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPK 1596 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cch
Confidence 66531 2234556666666666666677777766666644 34556666666666666666666666665543 122
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043284 220 ---LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288 (527)
Q Consensus 220 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (527)
.......+..-.+.|+.+++..+|+..+... +--...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 1122223333345566666666666666553 2245566666666666666666666666666655443
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.4e-05 Score=77.22 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=181.1
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
+-..+|......+.++...+-+.+-++++++++-....+..+...-+.++-...+ -+..+..+..+++..-+. |
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa--~--- 1052 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA--P--- 1052 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc--h---
Confidence 3344556666788889999999999999999964333333333333444433333 456677777777754311 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (527)
.+...+...+-+++|..+|++.. .+..+...++. ..++++.|.+.-++.. .+..|..+..+-
T Consensus 1053 ---~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1053 ---DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQ 1114 (1666)
T ss_pred ---hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHH
Confidence 24556677788899999998764 34444454443 3467888887776653 456799999999
Q ss_pred HcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
.+.|.+.+|++-|-+.- |+..|..++....+.|.|++-.+.+....+..-.|... ..|+-+|++.++..+..
T Consensus 1115 L~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELE 1186 (1666)
T ss_pred HhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHH
Confidence 99999999998886543 67789999999999999999999888887775555544 46788888888877665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
+.+ .-|+......+..-|...+.++.|.-+|..+ ..|..+...+...|++..|...-+
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 543 1356666677777777777777776666533 234455555566666665554433
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.5e-05 Score=78.57 Aligned_cols=301 Identities=16% Similarity=0.126 Sum_probs=132.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI 190 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (527)
++.......+++...+-+.+-+++++++.-.+ +..+...-+.++-...+ -+..++.+..+++..- + .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny-D-a~~------ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY-D-APD------ 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC-C-chh------
Confidence 44455556666666777777777776665322 11122222333322222 2333444444444321 1 111
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCC---------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMG---------------------MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
+...+...+-+++|+.+|++.-..+ -.-....|..+..+-.+.|...+|++-|-+ .
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---a 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---A 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---c
Confidence 2233334444555555554432100 001233445555555555555554443321 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043284 250 GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCC 329 (527)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (527)
.|+..|..+++...+.|.+++-.+.+.-..+..-+|.+. ..++-+|++.++..+..+++ .-|+.....
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 144445555555555555555555554444333233222 23444555555444433322 123444444
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
.+.+-|...+.++.|.-+|.... .|..+...+...|++..|...-++. .+..+|-.+-.+|...+.
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhh
Confidence 45555555555555555444332 2334444455555555554444333 234455555555544443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
+.-| +|...++.....-...++..|-..|-+++.+.+++..+
T Consensus 1265 FrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1265 FRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3322 12211222223334455555555666666555555443
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.97 E-value=3e-05 Score=71.45 Aligned_cols=188 Identities=12% Similarity=0.163 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE---GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.+++.++++.....-..-+..+|..+...--.. +..+....+++++.......-..+|..++..-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345556666554432222333333333221111 23566666777776654333445677788887888888999999
Q ss_pred HHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 043284 383 FDEFER-GSIP-SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC 460 (527)
Q Consensus 383 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 460 (527)
|.++.+ ...+ ++..+++++.-|+ .++..-|.++|+--.+. ...++.--...++.+...++-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999833 3333 6677777777665 46778888998876654 222344445667777888898999999999998766
Q ss_pred CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 461 FPNK--TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 461 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
.|+. .+|..++..-..-|+.+.+.++-++....-+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6654 5788888888888999988888877655444
No 109
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=8.7e-07 Score=79.85 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=143.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
.+-.++...++.++|+...+.+++.+|. +..+|.....++...| ++++++..++++.+..|- +..+|......+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~~~l 116 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHHHHH
Confidence 3344455678999999999999888774 6668888877777777 578999999888876443 455666555555
Q ss_pred HhcCCh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC---C
Q 043284 125 GLAGRP--ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK---D 199 (527)
Q Consensus 125 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 199 (527)
.+.|+. ++++..++++.+.+ +.+..+|.....++...|+++++++.++++++. ...|...|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccc
Confidence 566653 67788888888776 577888888888888888899999999888876 233566676666555443 2
Q ss_pred Ch----HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 200 DV----EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 200 ~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
.. +++++...+++.... -|...|+.+...+... +...+|.+.+.+..+.+ +.+......|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 356666656655432 3566677666666552 33455666666665543 2255556666666654
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1e-06 Score=89.38 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDR-GWVP---DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG 294 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (527)
+...|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3456777777788888888888888888764 1111 1346777777777778778888888888764 22345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIHWLCKE 373 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 373 (527)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-+.|..++.++++.-++ -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 78888888888889999988888752 346677888888888888888888888888775322 1344555566677788
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV--FTYNMLIQGFCKIGNAKEGIRI 451 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 451 (527)
|+.+.+..+|+......|.-...|+.++..-.++|+.+.+..+|++....++.|-. ..|...+..--..|+-..+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888888887777777888888888888888888888888888888776653 3445555444445554444333
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=3.7e-05 Score=70.84 Aligned_cols=409 Identities=11% Similarity=0.128 Sum_probs=247.4
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+..+|..|++-+..+ .++++++.+++++..-| ..+..|...+....+.++++...++|.+.+.. . .+...|..
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP---~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-v--LnlDLW~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP---SSPRAWKLYIERELASKDFESVEKLFSRCLVK-V--LNLDLWKL 91 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H--hhHhHHHH
Confidence 456788888877766 99999999999965544 46679999999999999999999999999873 2 24555654
Q ss_pred HHHHHHh-cCChhH----HHHHHHHHHh-cCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 120 VIRNYGL-AGRPEL----AVKTFLRIEK-FNVQR-SVRSLNTLLNAL---------VQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 120 l~~~~~~-~g~~~~----A~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
-+..-.+ .|+... ..+.|+-... .|..+ +...|+..+..+ ..+.+.+...++++++... ....
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc
Confidence 4443222 233333 3333443332 24322 223455544433 3344566777888887643 1110
Q ss_pred ------ChhhHHHHHHHHH-------cCCChHHHHHHHHhccc--CCCCCCHH---------------HHHHHHHHHHhc
Q 043284 184 ------NVFTCNILIKALC-------KKDDVEGAIRVLDEMPS--MGMVPNLV---------------THTTILGGYVWR 233 (527)
Q Consensus 184 ------~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~~~--~~~~p~~~---------------~~~~l~~~~~~~ 233 (527)
|-..|..-|+... +...+-.|.++++++.. .|...+.. .|..+|..-..+
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 1112221122111 23345566666666532 12211111 133333322111
Q ss_pred CCh--------HHHHHHHHHHHH-CCCCCCHHhHH-----HHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHH
Q 043284 234 GDI--------ENAKRVFGDILD-RGWVPDATTYT-----VLMDGYIKLGR-------LTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 234 ~~~--------~~a~~~~~~~~~-~~~~~~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
+-- ....=++++.+. .+..|+..... ..-+.+...|+ .+++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 111112222221 23333322111 11123333444 4555666666554322223333
Q ss_pred HHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 043284 293 YGVMIEAFC---KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP-DNAISSTIIH 368 (527)
Q Consensus 293 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 368 (527)
|..+...-- +.+..+...+.+++++.....--.-+|...+....+..-.+.|+.+|.++.+.+..+ ++.+.++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 333332211 122466777788877765433334567788888889999999999999999887666 6677777777
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN--VFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 446 (527)
.++ .++..-|.++|+.-.+....++.--...+.-+...++-..+..+|++....++.|+ ...|..++..-..-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 555 68899999999998666666777777788888899999999999999998877666 468999999999999999
Q ss_pred HHHHHHHHHHH
Q 043284 447 EGIRILEEMLD 457 (527)
Q Consensus 447 ~A~~~~~~~~~ 457 (527)
.+.++-+++..
T Consensus 490 si~~lekR~~~ 500 (656)
T KOG1914|consen 490 SILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHH
Confidence 99999888774
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2e-05 Score=76.03 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 444 NAKEGIRILEEMLDKGCFP----NKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
|....+.-...|++.-+.| -...|..|+..+....++..|.+.++.+.++.+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 5555666666666543333 346788999999999999999999999988776
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=3.8e-07 Score=79.95 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH--
Q 043284 74 FSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-- 150 (527)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 150 (527)
.......+..++..+...|++++|...|+++.+..|..+ ....+..+..++...|++++|+..++++.+... .+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 345677888999999999999999999999988654432 234677888999999999999999999987642 2222
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH
Q 043284 151 -SLNTLLNALVQN--------KRYDLVHLMFKNSRHKFKVVPNV-FTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL 220 (527)
Q Consensus 151 -~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 220 (527)
++..+..++... |++++|.+.|+++... .|+. ..+..+..... .... . .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~-----------~ 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L-----------A 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H-----------H
Confidence 455555666554 6788899999888765 3332 22322221110 0000 0 0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGW--VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.....+...+.+.|++++|...++..++... +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1122466778999999999999999988732 223578889999999999999999999988765
No 114
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=8.2e-06 Score=73.63 Aligned_cols=180 Identities=11% Similarity=0.012 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFC 301 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (527)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+... .+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 3334444555666777777777776653 224445555555555555 45677777766665532 24445555444444
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCH
Q 043284 302 KGKKS--GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE---GKI 376 (527)
Q Consensus 302 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 376 (527)
+.|+. +++.++++++.+.+.. +..+|.....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 44442 4556666666655433 5556666666666666666666666666665533 334444443333332 111
Q ss_pred ----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 377 ----WEAKKLFDEFERGSIPSLLTYNTLIAGMCE 406 (527)
Q Consensus 377 ----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (527)
+.......++....|.|...|+.+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 233333333333344455555555444444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.1e-06 Score=83.41 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 220 LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
...-..+...+...|-...|..+++++- .|...+.+|...|+..+|..+..+..+. +|+...|..+...
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3344556667778888888888887653 4566788888899999998888887774 6788888888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 379 (527)
.....-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888888776443 11122222344788999999999888765 34667788888888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.+.|.......|.+...||.+..+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999999876 44556677777788899999999999998874
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=1.7e-06 Score=72.62 Aligned_cols=159 Identities=10% Similarity=0.045 Sum_probs=116.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
+..|...|+++.+....+.+... . ..+...++.+++...++......+.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 44667778777764443222111 0 01223566777788888887777888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGF-CKIGN--AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.++++++++.+ +-+...+..++..+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888763 23566777777764 56676 589999999999864 2256778888889999999999999999
Q ss_pred HHHhCCCCChhhHHHH
Q 043284 489 MATASGSVESDSWNFL 504 (527)
Q Consensus 489 ~~~~~~~~~~~~~~~l 504 (527)
++.+..+++..-...+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9988888877655443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=3e-07 Score=87.14 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=178.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
..-..+...+.+.|-...|..+|++.. .|...+.+|...|+.++|..+..+-.+ -+|++..|..+++..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 334567788899999999999998865 467788899999999999999988887 467888888888887
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGR 415 (527)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 415 (527)
....-+++|.++.+..... .-..+.....+.++++++.+.|+......+-...+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888888765432 112222233447899999999999877777788999999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 416 LWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 416 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
.|...... .|| ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|........+.|.+++|.+.+.++....
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99998865 565 6789999999999999999999999999877 4456667767777889999999999999876544
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7.9e-06 Score=68.25 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL---- 268 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 268 (527)
..|++.|++++|++.+.... +......=...+.+..+++.|.+.++.|.+.. +..+.+.|..+|.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555666666666555411 23333333334445555666666666665542 445555555555432
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-hHHHHH
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKV-EDACEL 347 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~ 347 (527)
+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+..... ++.+...++.+....|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3456666666666542 2455556666666666666666666666666655433 444444444444444433 223334
Q ss_pred HHHHHh
Q 043284 348 WKRLLR 353 (527)
Q Consensus 348 ~~~~~~ 353 (527)
+..+..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=4.2e-07 Score=76.21 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
-+..|...|+++.+....+... .+. . .+...++.+++...+++..+..|. +...|..+...|..
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~---~---------~~~~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~ 85 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPL---H---------QFASQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLW 85 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Ccc---c---------cccCchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 4456678888888765554431 111 0 112356667777778777775444 77788888888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL-VQNKR--YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
.|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++++.... .+.+...+..+...+.+.|++++
T Consensus 86 ~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 86 RNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHH
Confidence 999999999999888876 56777787777764 66676 48899999888876 33466778888888888999999
Q ss_pred HHHHHHhcccCCCCCCHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~ 224 (527)
|+..|+++.+.. +|+..-+.
T Consensus 163 Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 163 AIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHhhC-CCCccHHH
Confidence 999999888764 34444443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=2.5e-07 Score=73.34 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.++..+...|++++|...|++++..+| .+...|..++.++.+.|++++|...|+++....|. +...+..+..++.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~~~a~~~lg~~l~ 103 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--HPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHH
Confidence 344444555555555555555544443 24445555555555555555555555555543222 3344444555555
Q ss_pred hcCChhHHHHHHHHHHhc
Q 043284 126 LAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~ 143 (527)
..|++++|+..|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=0.00027 Score=69.35 Aligned_cols=221 Identities=16% Similarity=0.102 Sum_probs=136.3
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
...++++.|.+-.++.++.+|+ ...+-..-.-.+.+.|+.++|..+++......+. +..+...+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhh
Confidence 4568889999999988877663 2222222223455889999999888877664333 7777888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC-C------
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL----VHLMFKNSRHKFKVVPNVFTCNILIKALCKKD-D------ 200 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------ 200 (527)
+|..+|++.... .|+......+..+|++.+++.+ |.++++... -+...+=++++.+.+.- .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p------k~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP------KRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------cccchHHHHHHHHHHhccCCccccc
Confidence 999999998875 4667777778888888877654 445554332 23344334444443321 1
Q ss_pred ---hHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 201 ---VEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFG-DILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 201 ---~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
..-|.+.++.+.+.+ ..-+..-...-.......|.+++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 123555566665543 11122222223334456778888888873 3333322334444445566677777777777
Q ss_pred HHHHHHHHCC
Q 043284 276 KVMDEMEDNG 285 (527)
Q Consensus 276 ~~~~~~~~~~ 285 (527)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 7777777664
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=8e-06 Score=68.22 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
++.+..+.+.|.+.+++|.+.+ +..+.+.|..++.+ .+.+.+|.-+|+++....+|+..+.+..+.++...|+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3444455555555555555432 34444444444433 2345566666666655555666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRILEEMLD 457 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 457 (527)
+++|..+++...... ..++.+...++-+-...|...+ ..+.+.++..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666666666542 2244455444444444444333 3344444443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=2.7e-06 Score=71.07 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+... ..+...+...|+-+.+..+........+. +.......+...++.|++..|+..+++..... ++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 4445 66666777778777777777775543332 55566667788888888888888888888765 67788888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
-+|.+.|+++.|..-|.+..+- ...+....+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 8888888888888888877765 233456677777777778888888888877766542 2566666677777778888
Q ss_pred HHHHHHHHHHH
Q 043284 237 ENAKRVFGDIL 247 (527)
Q Consensus 237 ~~a~~~~~~~~ 247 (527)
++|..+...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88877665443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=9.4e-06 Score=80.93 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=88.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 321 YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
...+...+..+..+..+.|.+++|..+++.+.+..+ .+......++..+.+.+++++|...+++.....+.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 334566666666666677777777777777666532 2445555566666677777777777777766666666666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777766531 223566666666667777777777777776654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=4.7e-06 Score=83.82 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=100.6
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC----
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK---- 111 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 111 (527)
=++.+...+..|+..+...+++++|.++.+..++..|+ ....|..++..+...++...+.-+ .+....+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 34455567888999999999999999999988776663 445666666677777776666555 333321110
Q ss_pred -------------cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 112 -------------CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 112 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+..++..++.+|-+.|+.++|..+++++++.. +.|+.+.+.+...|... ++++|.+++.+....
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122455566666667777777777777777766 56666777777777766 777777766665543
Q ss_pred CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 179 FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
+...+++..+.++|.++...
T Consensus 179 ----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ----------------HHhhhcchHHHHHHHHHHhc
Confidence 34444555555555555543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=1.3e-06 Score=86.92 Aligned_cols=150 Identities=12% Similarity=-0.039 Sum_probs=124.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 72 PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
..+..+..++..|..+....|.+++|..+++.+.+..|. +......++..+.+.+++++|+..+++....+ +.+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 344567889999999999999999999999999987555 67788889999999999999999999999876 567788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL 227 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 227 (527)
...+..++.+.|++++|..+|+++... .+.+..++..+..++.+.|+.++|...|++..+.. .|....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999999999999999999874 23357788899999999999999999999887642 23445554443
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=5.5e-06 Score=69.24 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=119.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA 408 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (527)
..+...+...|+-+....+........ +.+.......+....+.|++..|...|.+.....++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 455666667777777777776654433 3366666667788888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+++.|..-|.+..+.. .-++..++.+.-.+.-.||.+.|..++......+ .-|..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888888762 2345667777777778888888888888887654 2266667778888888888888888776
Q ss_pred H
Q 043284 489 M 489 (527)
Q Consensus 489 ~ 489 (527)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 5
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1.5e-05 Score=80.42 Aligned_cols=238 Identities=11% Similarity=0.081 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+..++..++..+...+++++|.++.+...+..|..+. .|..+...+.+.++.+.+..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l--------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLI--------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence 4555666666666666666666666655554333222 232333344555554444333 221
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.......++..+..+...+... ..+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 1122222222222222222221 1233455556666666666666666666666655 23555666666666666 66
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
++|++++.+.+.. +...+++..+.+++.++....+. +... -..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHHH
Confidence 6666666555443 44455666666666666654211 1112 22222222
Q ss_pred HHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043284 317 LQR-KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC 371 (527)
Q Consensus 317 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (527)
... +..--..++..+...|...++++++..++..+.+.... +......++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 221 11222334445566677777788888888888776543 4445555555554
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.2e-05 Score=66.77 Aligned_cols=199 Identities=17% Similarity=0.106 Sum_probs=156.0
Q ss_pred ccCCHHHHHHHHHHHHH---cC-CCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 302 KGKKSGEARNLLDDMLQ---RK-YVPSSA-LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 302 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
...+.++..+++.++.. .| ..++.. .+..++-+....|+.+.|...++.+...- +-+..+...-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 46788999999998875 33 344443 45667777888999999999999988874 44555544445556778999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 377 WEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
++|.++++.+....|.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999998888888888887777777788888999888888875 67799999999999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 457 DKGCFP-NKTSFSLLIEGLYESG---NEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 457 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
-. .| ++..+..+...++-.| +.+-|+++|+++.+..+.+...|..+
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 74 45 4556777887766554 67789999999998876444444443
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=1.1e-06 Score=69.58 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=81.3
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 61 LQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
...|+++++.+|+ .+......+...|++++|...|+.+....|. +...+..+..++...|++++|+..|++.
T Consensus 13 ~~~~~~al~~~p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPE------TVYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456666554442 3556677777888888888888888776443 6677778888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
...+ +.+...+..+..++...|++++|...|+.....
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8765 567777888888888888888888888887764
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=3.9e-05 Score=63.79 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=147.4
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 043284 267 KLGRLTDAVKVMDEMED---NG-VEPNEV-TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKV 341 (527)
Q Consensus 267 ~~g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (527)
...+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34578999999988864 33 344543 45666777888999999999999998864 33444444445556678999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 342 EDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
++|+++++.+...+ +.|..++..-+...-..|..-+|++-+....+....|...|..+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999987 45777777777777888998899999999988888999999999999999999999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHccC---CHHHHHHHHHHHHHC
Q 043284 422 EKGVEP-NVFTYNMLIQGFCKIG---NAKEGIRILEEMLDK 458 (527)
Q Consensus 422 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 458 (527)
-. .| ++..+..+...+.-.| +...|.++|.+.++.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65 45 4455566666554444 566799999999985
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.4e-05 Score=71.32 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=126.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
...+...|+++.|+..++.+++.. +.++.........+.+.++..+|.+.++++....|........+..+|.+.|++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 334557789999999999988864 4577777888899999999999999999997777666788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+|+.+++..... .+-|+..|..|.++|...|+..++..... ..+...|++++|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 999999988875 35578899999999999998887766544 34677899999999999998
Q ss_pred hCCCCChhhHHHHHH
Q 043284 492 ASGSVESDSWNFLLT 506 (527)
Q Consensus 492 ~~~~~~~~~~~~ll~ 506 (527)
+....+...|.-.=.
T Consensus 453 ~~~~~~~~~~aR~da 467 (484)
T COG4783 453 QQVKLGFPDWARADA 467 (484)
T ss_pred HhccCCcHHHHHHHH
Confidence 888777666654433
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=1e-07 Score=53.51 Aligned_cols=32 Identities=50% Similarity=1.040 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 424 GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=3.8e-06 Score=66.31 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=68.5
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++.++...|+ +......++..+...|++++|.+.|+.+.+..|. +...+..+..++...|++++|...+++..+.
T Consensus 6 ~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444442 3445566666666677777777777776664332 5556666666777777777777777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 144 NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+ +.+...+..+..++...|++++|...|+...+.
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 445566666666677777777777777666654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=9e-05 Score=67.76 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGR 270 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (527)
...+.+.++.++|.+.++++.... |+ ......+..++.+.|++.+|+.+++...... +.|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 334444444444444444443331 22 2223333334444444444444444443332 2234444444444444444
Q ss_pred hhHHHHHHH
Q 043284 271 LTDAVKVMD 279 (527)
Q Consensus 271 ~~~a~~~~~ 279 (527)
..++..-..
T Consensus 424 ~~~a~~A~A 432 (484)
T COG4783 424 RAEALLARA 432 (484)
T ss_pred hHHHHHHHH
Confidence 444443333
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.7e-07 Score=52.59 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=17.2
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 180 KVVPNVFTCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=7.4e-06 Score=64.63 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
++++....+.+......++..+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 333333333444555566666666677777777776666542 2345566666666666777777777777666543 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
+...+..++.++...|++++|.+.++.+.+..+.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 44556666667777777777777777766665433
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.46 E-value=5.2e-06 Score=63.85 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC-cChhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK-CGENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~ 121 (527)
.+..++..+.+.|++++|.+.|+.+++..|+......++..++.++.+.|+++.|...|+.+....|.. ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 456677788888888888888888877666544445677778888888888888888888887653332 2345677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.++...|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 78888888888888888887764
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=5.6e-06 Score=65.97 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=69.1
Q ss_pred hcCCchHHHHHHHHhhhCCCCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 043284 90 RARAFDAVESLLTELKQNPEIK-CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 166 (527)
..++...+...++.+.+..|.. ........+...+...|++++|...|+.+......++ ......+..++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666666666553322 2234445566666677777777777777766542222 123444566666677777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
+|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777554322 23444555666777777777777777664
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=1.7e-05 Score=63.19 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHcCCCh
Q 043284 127 AGRPELAVKTFLRIEKFNVQRS---VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN--VFTCNILIKALCKKDDV 201 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 201 (527)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.... ..|+ ......+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 444444444444444432 122 1222233344444555555555555544431 1111 11222334444445555
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
++|+..++...... .....+.....++.+.|++++|...|+.
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554433221 2233344444455555555555554443
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0028 Score=62.60 Aligned_cols=224 Identities=11% Similarity=0.099 Sum_probs=153.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
....+++.+|.....++.+..|..+...++.++ .+.+.|+.++|..+++.....+. .|..+...+-.+|...|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 346788999999999998876654333333333 34689999999999988877663 488899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH----HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC--------
Q 043284 168 VHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG----AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD-------- 235 (527)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------- 235 (527)
|..+|++.... .|+......+..+|++.+++.+ |+++++...+ +...+=.+++...+.-.
T Consensus 96 ~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 96 AVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 99999999876 5677777778888888877764 5555554333 44555555555443211
Q ss_pred --hHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 236 --IENAKRVFGDILDRG-WVPDATTYTVLMDGYIKLGRLTDAVKVMD-EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 236 --~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
..-|.+.++.+.+.+ ..-+..-.-.....+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 234556666666654 21122222333445567889999999983 44443333344555566777888899999888
Q ss_pred HHHHHHHcCCC
Q 043284 312 LLDDMLQRKYV 322 (527)
Q Consensus 312 ~~~~~~~~~~~ 322 (527)
+-.++...+..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 88888887644
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.37 E-value=9.3e-05 Score=64.27 Aligned_cols=73 Identities=5% Similarity=-0.072 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE 114 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 114 (527)
......+..+...|++++|++.|+.++...|+.+....+...++.++.+.+++++|...+++..+..|..++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 3344677778889999999999999988887654444455778889999999999999999999986665544
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.35 E-value=0.002 Score=58.60 Aligned_cols=438 Identities=12% Similarity=0.112 Sum_probs=226.6
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHH------HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH-
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDT------YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR- 122 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~- 122 (527)
.+.+++++.+|.++|.++.+... .++.. -..++.++. .++.+.....+....+..|.. .|..+..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~---~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s----~~l~LF~~ 86 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE---SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKS----AYLPLFKA 86 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh---cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 45578888888888888854322 23222 223444443 345666666666666654422 2332222
Q ss_pred -HHHhcCChhHHHHHHHHHHhc--CCCCC---HHHH---------HHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCC
Q 043284 123 -NYGLAGRPELAVKTFLRIEKF--NVQRS---VRSL---------NTLLNALVQNKRYDLVHLMFKNSRHKF---KVVPN 184 (527)
Q Consensus 123 -~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~---------~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~ 184 (527)
.+-+.|.+++|++.+...... +..+. ...+ +..+.++...|++.+++.+++++..+. ...-+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 234678888888888776654 22221 1111 234566777888888888888777652 11236
Q ss_pred hhhHHHHHHHHHcC--------CC-------hHHHHHHHHhcccC------CCCCCHHHHHHHHHHHHhc--CChHHHHH
Q 043284 185 VFTCNILIKALCKK--------DD-------VEGAIRVLDEMPSM------GMVPNLVTHTTILGGYVWR--GDIENAKR 241 (527)
Q Consensus 185 ~~~~~~l~~~~~~~--------~~-------~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~ 241 (527)
..+|+.++-.+.+. .. ++.+.-+..+|... .+.|.......++....-. ....--.+
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 66777654444321 01 11122222222211 0112222222222221111 11111122
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 242 VFGDILDRGWVPDAT-TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP----NEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
++..-...-+.|+.. +...+...+.. +.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222222222333322 22233333333 5666666666655442221 1345666777777777777777777766
Q ss_pred HHcCCCCCHHhHHH-------HHHHHH-hcC---CHhHHHHHHHHHHhCCCCCCHhhHHHHH---HHHHHcCC-HHHHHH
Q 043284 317 LQRKYVPSSALCCK-------VIDLLC-EEG---KVEDACELWKRLLRKNCMPDNAISSTII---HWLCKEGK-IWEAKK 381 (527)
Q Consensus 317 ~~~~~~~~~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~ 381 (527)
.-.++. ...-.. +-+..+ ... +...-+.+|+.....++. .......++ .-+-+.|. -++|..
T Consensus 325 ~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 325 KILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 554322 221111 111111 111 122233444444443321 111111222 22334455 788888
Q ss_pred HHHHHhcCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHccCCHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIA----GMCE---SAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQG--FCKIGNAKEG 448 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A 448 (527)
+++.+..-.+-|...-|.+.. +|.+ ...+..-+.+-+-+.+.|+.|- ...-|.|.++ +...|++.++
T Consensus 402 LLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 402 LLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 888886655556655444332 2322 2334444455555556677664 3344555554 4678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
.-.-..+.+ +.|++.+|..++.++....++++|+.++... ||+...+++-..
T Consensus 482 ~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~dskvq 533 (549)
T PF07079_consen 482 YLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDSKVQ 533 (549)
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHHHHH
Confidence 877666666 7899999999999999999999999999986 556666665444
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.2e-05 Score=71.30 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=77.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
+......++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.... .+.+........
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa 241 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQA 241 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44444556666666666777777777766543 33 3334556666666666666666666654 233455555555
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
..+.+.++++.|+.+.+++.... |+ ..+|..|..+|...|+++.|+..++.+-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666777777777777666653 33 3466777777777777777776666554
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=4.9e-05 Score=70.12 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
..++..+...++++.|+.+|+++.+.. +.....+++.+...++..+|++++.+..+.. +.+...+..-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD-----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC-----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 334444444455555555555555432 1123334444444555555555555554432 3344444444455555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
.++++.|+.+.++.... .+-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555555555443 11223355555555555555555555555544
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=5.2e-05 Score=59.08 Aligned_cols=101 Identities=8% Similarity=-0.006 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+.+....+...+...|++++|.++|+.+...++. +...|..|..++-..|++++|+..|......+ +.++..+..+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4556667777777888999999999888876544 66778888888888889999999998888877 57788888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
.++...|+.+.|.+.|+..+...+
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888999988888888776643
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=3.1e-05 Score=60.30 Aligned_cols=96 Identities=8% Similarity=0.051 Sum_probs=85.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
....++..+...|++++|.++|+.+...+| -+..-|..+..++...|++++|+..|..+....+. ++..+..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp---~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--dp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDA---WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHH
Confidence 456778888899999999999999988777 47779999999999999999999999999987654 6778889999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++...|+.+.|++.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988875
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=5.1e-05 Score=70.33 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..++..|++++|+..|+++++..|. +...|..+..++...|++++|+..++++.+..|. +...|..+..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~ 79 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHH
Confidence 345677888999999999999999988774 6778999999999999999999999999887554 66788888999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
|...|++++|+..|++..+.+ +.+......
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~ 109 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLA-PGDSRFTKL 109 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 999999999999999999875 334444333
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=7.7e-05 Score=57.23 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF--PNKTSFSL 469 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 469 (527)
++..++..+...|++++|.+.|+.+... .|+ ...+..+..++.+.|+++.|...|+++...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555666777777888888888777754 222 345556777777788888888888877764211 11345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCChhh
Q 043284 470 LIEGLYESGNEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
++.++.+.|+.++|.+.++.+....|.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777888888888888877776654433
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=3.1e-05 Score=63.85 Aligned_cols=91 Identities=10% Similarity=-0.063 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
....+..++..+...|++++|...|+.+++..+........+..++..+.+.|++++|...++++.+..+. +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--QPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHH
Confidence 33456677777777788888888877776554432222456777777777777777777777777765333 4455556
Q ss_pred HHHHHHhcCChhH
Q 043284 120 VIRNYGLAGRPEL 132 (527)
Q Consensus 120 l~~~~~~~g~~~~ 132 (527)
+..++...|+...
T Consensus 112 lg~~~~~~g~~~~ 124 (172)
T PRK02603 112 IAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHcCChHh
Confidence 6666666665433
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0034 Score=56.45 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=47.2
Q ss_pred HHccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 300 FCKGKKSGEARNLLDDMLQRK---YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+.. -...+..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 345677777777777666532 3344455555556666667777776666666544210 111222223344455666
Q ss_pred HHHHHHHHHH
Q 043284 377 WEAKKLFDEF 386 (527)
Q Consensus 377 ~~a~~~~~~~ 386 (527)
++|.+-|+..
T Consensus 338 e~AV~d~~~a 347 (486)
T KOG0550|consen 338 EEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=0.0098 Score=57.22 Aligned_cols=219 Identities=13% Similarity=0.062 Sum_probs=140.6
Q ss_pred CChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh--------hhHHHHHHHHHh
Q 043284 55 QNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE--------NLFITVIRNYGL 126 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~ 126 (527)
=.+++|.++.+.- |-+..|..+.......-.++.|...|-+...-.+++.-. ..-..-+. +-
T Consensus 677 vgledA~qfiEdn--------PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~ 746 (1189)
T KOG2041|consen 677 VGLEDAIQFIEDN--------PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AF 746 (1189)
T ss_pred hchHHHHHHHhcC--------CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hh
Confidence 3456666665422 567799999888887778888888887766543332111 11111122 23
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
-|++++|.+++-.+.+++ ..+....+.|++-.+.++++.--...+...-...|+.+...+.....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998877643 35667778888888888876543221122235578888888888888999988
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
.|..-... ...+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+..
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---- 879 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---- 879 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence 88764421 23456666666666655444333 3355667778888888888888887765432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 287 EPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
.| ...+..|...++|.+|.++-+.
T Consensus 880 ~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 880 LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2345567777778777776554
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0048 Score=55.56 Aligned_cols=283 Identities=13% Similarity=0.045 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
....+..+.++.++..|++.+..+++..|. +...|..-+..+...|++++|.--.+...+..+. .........++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~--~~k~~~r~~~c 126 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG--FSKGQLREGQC 126 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCC--ccccccchhhh
Confidence 456666777888899999999888877664 5667777777788888888887777666554222 22234445555
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH-HHHHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI-KALCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 202 (527)
+...++..+|.+.++. ...+ ....++..++.+......+|....|..+- .++.-.|+++
T Consensus 127 ~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 5555555555555541 1111 11222223333333322334444444443 3445567777
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHh-------------HHHHHHHHHhcC
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATT-------------YTVLMDGYIKLG 269 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g 269 (527)
+|...--..++... .+......-..++.-.++.+.+...|++.+..+ |+... +..-.+-..+.|
T Consensus 187 ~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 77776666555431 122222222234445677777777777777653 22211 122233456788
Q ss_pred ChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 043284 270 RLTDAVKVMDEMEDNG---VEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACE 346 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (527)
.+..|.+.|.+.+... ..++...|........+.|+.++|+.--+.....+.. -...+..-..++...++|+.|.+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998887643 2345566767777778889999988887777664211 12233344556667788888888
Q ss_pred HHHHHHhCC
Q 043284 347 LWKRLLRKN 355 (527)
Q Consensus 347 ~~~~~~~~~ 355 (527)
-++...+..
T Consensus 343 d~~~a~q~~ 351 (486)
T KOG0550|consen 343 DYEKAMQLE 351 (486)
T ss_pred HHHHHHhhc
Confidence 888887754
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00023 Score=56.24 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=104.1
Q ss_pred CChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHH
Q 043284 55 QNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAV 134 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 134 (527)
..+.+|.+-++.+ |+...-..+...+...|++.+|...|++... .+...+......+.++....+++..|.
T Consensus 74 R~~Rea~~~~~~A--------pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 74 RHLREATEELAIA--------PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHHHhhc--------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 3455555555555 5666677888888999999999999999887 566667888888999999999999999
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043284 135 KTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLD 209 (527)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 209 (527)
..++++-+.+. ..++.....+.+.+...|.+..|+..|+..... -|+...-.-....+.++|+.+++..-+.
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 99998877641 122445566778888999999999999988865 4555544444455667776665544433
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=0.00013 Score=65.50 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhC---CCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 83 SIIHKLARARAFDAVESLLTELKQN---PEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..|...|++++|.+.|.++... .+. ......|.....+|.+ +++++|++.+++.. ..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~---------------~~ 103 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI---------------EI 103 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH---------------HH
Confidence 3355666777777777777766432 010 0011223333333322 25555555554443 33
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC-CChHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHh
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK-DDVEGAIRVLDEMPSM----GMV-PNLVTHTTILGGYVW 232 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~ 232 (527)
|...|++..|-..+.++ ...|-.. |++++|++.|++..+. |-. .-..++..+...+.+
T Consensus 104 y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 104 YREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 44455544444433332 2233333 4555555555444321 100 012234455556666
Q ss_pred cCChHHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 233 RGDIENAKRVFGDILDRGWV-----PDAT-TYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.|++++|.++|+++...... .+.. .+...+-++...||...|.+.+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666665543211 1111 1222233455556666666666665543
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=4.8e-06 Score=59.13 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=43.9
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
+|+++.|+.+|+++++..|.. ++...+..++.++.+.|++++|..++++ .+..+. +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHH
Confidence 466666666666666555531 1344455566666666666666666665 221111 223333446666666666666
Q ss_pred HHHHHH
Q 043284 134 VKTFLR 139 (527)
Q Consensus 134 ~~~~~~ 139 (527)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=7e-06 Score=58.27 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 91 ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170 (527)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (527)
.|+++.|+.+++++.+..+..++...+..+..++.+.|++++|.+++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665433212333444556666666666666666655 2222 1222333344566666666666666
Q ss_pred HHHH
Q 043284 171 MFKN 174 (527)
Q Consensus 171 ~~~~ 174 (527)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=7.1e-05 Score=54.65 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|...++.+++..| .+...+..++..+...+++++|.+.++......+. +...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP---DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHH
Confidence 34566666777777777777777765544 23356666666666777777777777766654322 33455566666
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043284 124 YGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~ 142 (527)
+...|++++|...+....+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6666777777766666654
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.05 E-value=8.4e-05 Score=65.00 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 122 (527)
|......+.+.|++++|+..|+.+++..|+..-.+.++..++..+...|++++|...|+.+.+..|. +.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444567789999999999998888875555678888899999999999999999998876343 223455666777
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++...|+.++|..+|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888888775
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0014 Score=56.99 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...+...+..+...|++++|.+.|+.+....|..+- ......++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3334444555556667777777777777665443211 1122455666677777777777777776653
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=9.2e-05 Score=60.78 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
...|..++..+...|++++|...|+++....+.++ ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34455556666666666666666666655422211 12355666666666666666666666666543 23344444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 043284 157 NALV-------QNKRYDLVHLMFK 173 (527)
Q Consensus 157 ~~~~-------~~g~~~~a~~~~~ 173 (527)
..+. ..|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 5666654444443
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=0.00026 Score=53.32 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 122 (527)
...++.++-..|+.++|+.+|++++........-...+..+...+...|++++|..+++......|. ..+......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3456777777888888888888886543322222456777777788888888888888877765332 122333333445
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 123 NYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~ 142 (527)
++...|+.++|++.+-....
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66677888888777766553
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.017 Score=55.62 Aligned_cols=374 Identities=14% Similarity=0.113 Sum_probs=205.5
Q ss_pred CCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHH------HHHHHHHHHhcCCchHHHHHHHHhhhCC
Q 043284 35 IKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDT------YHSIIHKLARARAFDAVESLLTELKQNP 108 (527)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (527)
+++.|.|..++.++......-.++-|...|-+. ...+|++.-... -....+.-.--|+|++|.++|-.+..+
T Consensus 686 iEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc-~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr- 763 (1189)
T KOG2041|consen 686 IEDNPHPRLWRLLAEYALFKLALDTAEHAFVRC-GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR- 763 (1189)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhh-ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-
Confidence 456788899999999988888999999888777 334443211000 011122223348999999999887654
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT 187 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (527)
+ ..+..+.+.|++-...++++.--... -..-..+++.+...+.....+++|.+.|......
T Consensus 764 ----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 764 ----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred ----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 1 24566677888888777776532110 0112457888888888888999999888665421
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
...+.++....++++-..+-..+.+ +....-.+...+...|.-++|.+.+-+ .+. |. ..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHHHHHH
Confidence 2356666666777776666666654 455566677788888888888776533 221 11 33456667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHh-HH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYG--------------VMIEAFCKGKKSGEARNLLDDMLQRK---YVPSSAL-CC 329 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~-~~ 329 (527)
.+++.+|.++-+... -|.+.+.. ..|..+.+.|.+-.|-+++.+|.+.. ..|-... -.
T Consensus 891 LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 777877777765543 12222211 11233445555555666666665421 1121111 01
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
.++.++. ..+..++.+-.+....+|...+... +...|-..++-++.+..-.+ .....+-.|++--...|.
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg--AEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG--AEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh--HHHHHHHHHHHHHHHhch
Confidence 1111111 1222333333344434443222111 11222233333333322111 123334444555556688
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 410 ~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
++.|++.--.+.+. .+-|....|..+.-+.+....+...-+.|-++..
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 88887755444432 3456677777776666666666655555555543
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=0.00031 Score=62.78 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK-EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC 405 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (527)
+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56677777777777888888888887543 3344555555555334 456666888888886666677777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIE 472 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 472 (527)
..|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+..+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 888888888888888765 32222 36777777777778888888888777763 344333433333
No 165
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.6e-05 Score=45.28 Aligned_cols=33 Identities=48% Similarity=0.993 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN 428 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 428 (527)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.7e-05 Score=45.26 Aligned_cols=33 Identities=45% Similarity=0.960 Sum_probs=31.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN 463 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 463 (527)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00016 Score=62.06 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
-+.-+.+.++|++|+..|.++++..| .|+.-|..-..+|.+.|.++.|++-.+.....+|. ....|..|..+|..
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P---~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDP---TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--YSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--HHHHHHHHHHHHHc
Confidence 33344455566666666666665555 35555556666666666666666666666554332 44556666666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
.|++++|++.|++.++. .|+..+|
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHH
Confidence 66666666666666553 3444433
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.96 E-value=2.5e-05 Score=52.26 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
.++..+.+.|++++|+..|+.+++..|+ +...+..++.++...|++++|...|+++.+..|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3566777788888888888888766653 677777888888888888888888887766533
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00016 Score=64.56 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL-AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
+|..++....+.+..+.|+.+|.++.+.... +..+|...+..-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5666677777777777777777777754332 34455544444233 45555577777777665 35666667777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVP-NVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
+...|+.+.|..+|++......... ....|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777765422111 223566666666666666666666666554
No 170
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.8e-05 Score=44.74 Aligned_cols=32 Identities=31% Similarity=0.699 Sum_probs=15.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.0016 Score=63.26 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=93.7
Q ss_pred CCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKE-----GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA--------ELTEAGRLWDDMVE 422 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 422 (527)
.+.+...|...+++.... ++...|..+|++.....|.+...|..+..++.... +...+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666676666664332 22667777888876666666666666555543321 22334444444333
Q ss_pred c-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 423 K-GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 423 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
. ....+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++....|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2 123345667666666666789999999999998854 7888888888889999999999999999888876544
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00016 Score=52.64 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+..++..+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 445556666667777777777766654322 33455566666666677777777777666654 334455666666666
Q ss_pred hcCCHHHHHHHHHHhhh
Q 043284 161 QNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~ 177 (527)
..|+++.|...+.....
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666665543
No 173
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=2.2e-05 Score=44.38 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.93 E-value=0.00065 Score=57.54 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC 112 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 112 (527)
....+..+...|++.+|++.|+.+....|+.+-...+...++.++.+.|+++.|...+++..+..|..+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345666777888888888888888777777666677777888888888888888888888777655433
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00016 Score=61.97 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=72.2
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 448 (527)
..+.+++.+|...|.....-.|.|.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 556678888888888887777778888888888888888888888877777754 444 45677777888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 043284 449 IRILEEMLDKGCFPNKTSFSL 469 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~ 469 (527)
++.|++.++ +.|+..+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 888888877 5677666543
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.90 E-value=0.00034 Score=64.93 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 83 SIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN 162 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (527)
..+..+...|++++|++.|+++.+..|. +...|..+..+|...|++++|+..+++++... +.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455666778888888888888876544 56677778888888888888888888888765 45677777888888888
Q ss_pred CCHHHHHHHHHHhhhc
Q 043284 163 KRYDLVHLMFKNSRHK 178 (527)
Q Consensus 163 g~~~~a~~~~~~~~~~ 178 (527)
|++++|+..|++....
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888887764
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00027 Score=65.59 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTH 223 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 223 (527)
.+.+......++..+....+.+.+..++-+....... .--..|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556666667777777777778888887777654211 122345668888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (527)
+.++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888776666666666666655554
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.00056 Score=56.34 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
....+..++..+...|++++|...|+++.+..+..++ ...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3456788888888899999999999998865333222 3577888889999999999999999988864 4456677777
Q ss_pred HHHHHhcCCHHHHHH
Q 043284 156 LNALVQNKRYDLVHL 170 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~ 170 (527)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 778877777555443
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.0013 Score=52.15 Aligned_cols=132 Identities=10% Similarity=0.009 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
+..--..+..+..+.|+..+|...|++...--+-.|......+.++....+++..|...++.+.+......++.+.-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 44445577888888899999999888888754556777788888888888888888888888876532222345566677
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+.+...|....|...|+.....- |+...-......+.++|+.+++..-+..+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88888888888888888887753 45444333444556677666655444433
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00046 Score=66.91 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR--------AFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
+.+.|+.+|+++++.+|++ ..+|..+..++.... ++..+.+..++.......+.+...|..+.......
T Consensus 357 ~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 3667777777777777753 334444433332211 12233333333333222223444555555555556
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666654 45566666666666666666666666665543
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00031 Score=65.23 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK--NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLT 396 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 396 (527)
+.+.+......++..+....+.+.+..++-+.... ....-+.+..++++.|.+.|..+.+..++..= ..|.-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33445556666677777777777777777776654 22222344567788888888888887777654 6677788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+|.++..+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777777666556666666655555443
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0012 Score=57.18 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCChhhHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK---RYDLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
|..-|..|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...++..+|+++... .+.|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 55566666666666666666666666666554 455555555555554432 234566666666554 233444455
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccC
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666655
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0033 Score=56.51 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=64.2
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHhHHHHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR-GDIENAKRVFGDILDR----GWV-PDATTYTVLMDG 264 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 264 (527)
.+..|...|++..|-+++.. +...|... |+++.|++.|++..+. +.+ .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 33456666666666555544 34455555 7888888888777643 211 113345667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 265 YIKLGRLTDAVKVMDEMEDNGVEPN-----EV-TYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
+.+.|++++|.++|++........+ .. .+...+-++...||...|...+++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888765432211 11 2222333555567777777777776654
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0013 Score=56.97 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCC
Q 043284 384 DEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG---NAKEGIRILEEMLDKGC 460 (527)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 460 (527)
+.-....|.|...|-.|...|...|+++.|..-|.+..+. -.++...+..+..++..+. ...++..+|++++..+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D- 223 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD- 223 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-
Confidence 3334456778999999999999999999999999988876 2345666777777665433 3567889999999854
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 461 FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+-|......|...+...|++.+|...|+.|.+..+++. .|..++.
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 22556777888899999999999999999998887654 5555555
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.024 Score=50.86 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=116.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCH
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGENLFITVIR--NYGLAGRPELAVKTFLRIEKFNVQRSVRS--LNTLLNALVQNKRY 165 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 165 (527)
..|+-..|+++-.+..+. +..|...+..++. +-.-.|+++.|.+-|+.|.. .|.... +..|.-...+.|..
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccH
Confidence 345555555555554432 1112222222222 22334666666666666653 122211 11222222345555
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC-CCCCHH--HHHHHHHHHH---hcCChHHH
Q 043284 166 DLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG-MVPNLV--THTTILGGYV---WRGDIENA 239 (527)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~---~~~~~~~a 239 (527)
+.|.+.-+..-.. -+.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|
T Consensus 171 eaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 5555555554433 12223445555555666666666666655443321 222221 1111111111 12234444
Q ss_pred HHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATT-YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
...-.+..+. .||-.- -..-..++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+. +..-++....
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 4444443332 333221 12223455566666666666666655532222 2211 112233332 2222222211
Q ss_pred -cCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHH
Q 043284 319 -RKYVP-SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC-KEGKIWEAKKLFDEF 386 (527)
Q Consensus 319 -~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 386 (527)
...+| +......+.++....|++..|..--+...+. .|....|..+...-. ..|+-.++...+.+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 01122 2333334455555556665555555444433 334444444444432 236666666665555
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.001 Score=54.64 Aligned_cols=63 Identities=10% Similarity=-0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
..++..+...|++++|...|+.++...++......++..+...+...|++++|+..++++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444555555555555554333321112234444555555555555555555555443
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.0023 Score=54.28 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...+...+..+...|++.+|++.|+.+....|. +........++.++.+.|+++.|...++++.+.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445666677777888888888888888876332 3344566677788888888888888888877653
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.0015 Score=49.23 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP-NVFTCNILIKAL 195 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 195 (527)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++....+...+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344455555666666666665555553332 23444455555555666666666655554311100 111112222344
Q ss_pred HcCCChHHHHHHHHhcc
Q 043284 196 CKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~ 212 (527)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45555555555554433
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00059 Score=49.33 Aligned_cols=72 Identities=18% Similarity=0.396 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGW-VPDATTYTVLMDGYIKLG--------RLTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
.+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555555 455555555555444332 123344555555555555555555555554
Q ss_pred H
Q 043284 300 F 300 (527)
Q Consensus 300 ~ 300 (527)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 4
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=4.5e-05 Score=51.73 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQ 106 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 106 (527)
.+..++..+...|++++|+..|+++++.+|. +...|..+..++...| ++++|++.++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555566666666666655555542 4445555555555555 45555555555544
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00056 Score=49.44 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM-VPNLVTHTTILGGYVWRGD--------IENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..- .-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888887 7888888888877665432 345667888888888888888888
Q ss_pred HHHHHHHh
Q 043284 260 VLMDGYIK 267 (527)
Q Consensus 260 ~l~~~~~~ 267 (527)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.68 E-value=0.00078 Score=62.07 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
.+.++..+..++..|...|++++|+..|+++++.+|+......+|+.+..+|...|++++|+..++++.+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33455678899999999999999999999999888753222256999999999999999999999999884
No 193
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.0021 Score=54.91 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 122 (527)
....+-.+...|++..|...|...++..|+..-.+.++.-|++++...|++++|...|..+.+..|..+. +..+..+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4566666778889999999999999999988888889999999999999999999999999887554443 367788888
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 888999999999999998876
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.0004 Score=62.04 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILD----RGW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGV-EPNEV 291 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~ 291 (527)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666666777777765543221 121 11223556677777777788887777766432 221 11233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQR-----KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLR 353 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (527)
....+.+.|.-..++++|+.++.+-+.. +..-....+..+..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666666667777777776654321 1122345666777777777777777766655443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=0.00035 Score=47.10 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
..|++++|++.|+++.... |.+..++..++.+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544443 23444444455555555555555555554443
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.62 E-value=0.00021 Score=49.05 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
..+|.+++++++|+++++.+++..|. ++..+...+.++.+.|++++|.+.|+++.+..|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45678888888888888888877774 6778888888888888888888888888876553
No 197
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8e-05 Score=40.93 Aligned_cols=29 Identities=45% Similarity=0.662 Sum_probs=14.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMG 215 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 215 (527)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.8e-05 Score=40.57 Aligned_cols=29 Identities=45% Similarity=1.020 Sum_probs=13.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.59 E-value=0.059 Score=49.45 Aligned_cols=125 Identities=13% Similarity=0.009 Sum_probs=84.9
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 61 LQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+.+=+++ +.+| .|..+|..+++.+...+..++-+++++++... .+.-..+|..-+..-...+++.....+|.+.
T Consensus 29 lrLRerI-kdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 29 LRLRERI-KDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHh-hcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 3555555 4455 58899999999999999999999999999874 4446667877777777788999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHhhhcCCCCCC-hhhHHHHHH
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRY------DLVHLMFKNSRHKFKVVPN-VFTCNILIK 193 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 193 (527)
+... .+...|...+..--+.++. -...+.|+-...-.++.|- ...|+..+.
T Consensus 103 L~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~ 160 (660)
T COG5107 103 LKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGL 160 (660)
T ss_pred Hhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHH
Confidence 8864 4456666666544443311 1223444444443345553 334555444
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00035 Score=47.29 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 043284 429 VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP-NKTSFSLLIEGLYESG-NEGEVGKVVSMATAS 493 (527)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 493 (527)
..+|..+...+...|++++|+..|+++++.+ | +...+..++.++.+.| ++++|++.++++.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455566666666666666666666666542 3 3345556666666666 466666666665543
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.56 E-value=0.064 Score=49.23 Aligned_cols=403 Identities=13% Similarity=0.097 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+..+|..|+.-+..+|.+++.+++++++... ++--+.+|...+..-...+++.....+|.+.+.. .. +...|..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p---fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l--~ldLW~l 114 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP---FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SL--NLDLWML 114 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC---CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hc--cHhHHHH
Confidence 4567899999999999999999999999433 3344558888888888889999999999999874 22 5556665
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHh-cCCCC-CHHHHHHHHHHHH---hcCC------HHHHHHHHHHhhhcCCCC
Q 043284 120 VIRNYGLAGR------PELAVKTFLRIEK-FNVQR-SVRSLNTLLNALV---QNKR------YDLVHLMFKNSRHKFKVV 182 (527)
Q Consensus 120 l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~~~~~ 182 (527)
-+..-.+.+. -....+.|+-... .++.| ....|+..+..+- ..|. .|...+.+.++... .+.
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t-P~~ 193 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT-PMG 193 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 5554333321 1122333443332 23333 3445666555443 2343 44566666666643 111
Q ss_pred CChhhHHHHHHHHHc-------------CCChHHHHHHHHhccc--CCCC----CCHHHHHHH-----------HHHHHh
Q 043284 183 PNVFTCNILIKALCK-------------KDDVEGAIRVLDEMPS--MGMV----PNLVTHTTI-----------LGGYVW 232 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~--~~~~----p~~~~~~~l-----------~~~~~~ 232 (527)
.-...|+-.-..-.. .--+-.|...++++.. .|.. .+..+++.+ |..-..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 112233322110000 0112344445544432 1211 122233322 111110
Q ss_pred c-----CC-h-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccC
Q 043284 233 R-----GD-I-ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGV-MIEAFCKGK 304 (527)
Q Consensus 233 ~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 304 (527)
. |+ . ...--++++.+.. +.-....|-.--..+...++-+.|+...+..... .|+ .+. +...|.-.+
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~n 347 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVN 347 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcc
Confidence 0 00 0 0111122222221 1223333333334445667778888776654432 233 122 222333334
Q ss_pred CHHHHHHHHHHHHHc--------------CCC---------------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 305 KSGEARNLLDDMLQR--------------KYV---------------PSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 305 ~~~~a~~~~~~~~~~--------------~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
+.+.+...|++..+. +.. .-...|...+....+....+.|..+|-++.+.+
T Consensus 348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 444444434332210 000 011223334444455555666666666666665
Q ss_pred -CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHH
Q 043284 356 -CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN--VFTY 432 (527)
Q Consensus 356 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~ 432 (527)
..+++.++++++..+ ..|+...|..+|+.-....+.+..--+..+.-+...++-+.|..+|+...+. +..+ ...|
T Consensus 428 ~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 428 IVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 345555556655543 3466666666666654444444444445555556666666666666654432 2222 3456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 433 NMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..++..-..-|+...+..+=++|.+
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6666666666666666655555554
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.057 Score=48.56 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=162.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HHcCCChHHHHHHHHhcccCCCCCCHHHH--HHHHHHHHhcCChH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA--LCKKDDVEGAIRVLDEMPSMGMVPNLVTH--TTILGGYVWRGDIE 237 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~ 237 (527)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |..... ..|.-..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 46666777666655432 22344444444433 33468888888888888862 333221 22222334678888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---ccCCHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG-VEPNEV--TYGVMIEAFC---KGKKSGEARN 311 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~ 311 (527)
.|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8887777766552 2235667777888888888888888887655432 233331 1112222111 1233445555
Q ss_pred HHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH---h
Q 043284 312 LLDDMLQRKYVPSSA-LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF---E 387 (527)
Q Consensus 312 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~ 387 (527)
.-.+..+ ..|+.. .-.....++.+.|+..++-.+++.+-+..+.|+.. .+..+.+.|+ .+..-+++. .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 4444443 233321 22334567788888888888888888775554422 1222333443 333333333 3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHC
Q 043284 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF-CKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 458 (527)
...+.+..+...+..+-...|++..|..--+..... .|....|..|.+.- ...||-.++..++.+.+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 334456667777777777788888777766666543 67777777777655 3458888888888877754
No 203
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00052 Score=45.76 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 402 AGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 402 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+...|++++|...|+++.+.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555444431 11233444444444445555555555544443
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.067 Score=48.56 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++-.. .-++.-|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 44555667788899999988887773 37889999999999999999988776532 2245778999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHHhchhhhH-HHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIVSDLDSGA-GALD 520 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~-~~~~ 520 (527)
.|...+|..+..+ ++ + ..-+..|.+.|++.+|.+.--+. .|...+..+...+.++-+... ...+
T Consensus 250 ~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~-----kd~~~L~~i~~~~~~~~~~~~~~~i~ 314 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE-----KDIDLLKQILKRCPGNNDQLIADKIE 314 (319)
T ss_pred CCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc-----CCHHHHHHHHHHCCCCChHHHHHHHH
Confidence 9999999998887 22 2 33456789999999998765542 477778888777766544433 3344
Q ss_pred HH
Q 043284 521 EL 522 (527)
Q Consensus 521 ~~ 522 (527)
.+
T Consensus 315 ~~ 316 (319)
T PF04840_consen 315 QM 316 (319)
T ss_pred HH
Confidence 43
No 205
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.52 E-value=0.094 Score=50.15 Aligned_cols=385 Identities=12% Similarity=0.094 Sum_probs=206.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++.--....+.+.++.+++.++..-| --..-|......-.+.|..+.+.++|++..+. ++.+...|......
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyP---l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYP---LCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF 122 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCc---cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 33444433344555777778888864443 22335666666777888888999999888874 44466666655443
Q ss_pred H-HhcCChhHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH---c
Q 043284 124 Y-GLAGRPELAVKTFLRIEKF-NVQ-RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC---K 197 (527)
Q Consensus 124 ~-~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 197 (527)
+ ...|+.+.....|+..+.. |.. .....|...+..-..++++.....++++..+. | ...++..-..|. +
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHHh
Confidence 3 3557788888888888765 211 33556777787778888888888888888754 1 111211111111 1
Q ss_pred C------CChHHHHHHHHhccc--------------------CCCCCCH--HHHHHHHH-------HHHhcCChHHHHHH
Q 043284 198 K------DDVEGAIRVLDEMPS--------------------MGMVPNL--VTHTTILG-------GYVWRGDIENAKRV 242 (527)
Q Consensus 198 ~------~~~~~A~~~~~~~~~--------------------~~~~p~~--~~~~~l~~-------~~~~~~~~~~a~~~ 242 (527)
. ...+++.++-..... .+-+.+. ...+.+-. .+-.........-.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 122322222211110 0000000 01111111 11111222222223
Q ss_pred HHHHHHCC---C----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 243 FGDILDRG---W----VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 243 ~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
++.-++.- + .++..+|...+..-.+.|+++.+.-+|++..-- +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33322221 1 224566777778888888988888888887531 011123444444444555888888777776
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHH---HHHHHHhcCCC
Q 043284 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-AISSTIIHWLCKEGKIWEAK---KLFDEFERGSI 391 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~ 391 (527)
..+--.+..+.+-..-....-..|++..|..+++.+...- |.. ..-..-+....+.|+.+.+. .++.....+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~- 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK- 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-
Confidence 6654333233322222333445678888988888887753 332 22223344556677777777 3333332221
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 043284 392 PSLLTYNTLIA-----GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG 443 (527)
Q Consensus 392 ~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (527)
.+......+.. .+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 12222222222 223357788888888888875 4556667777777665544
No 206
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.51 E-value=0.041 Score=46.84 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE 114 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 114 (527)
+..-+....+.|++++|...|+.+...+|..+-...+...++.++.+.++++.|+..+++.....|..++.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 44556666678888888888888887777777777777888888888888888888888888876665554
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.001 Score=59.58 Aligned_cols=271 Identities=13% Similarity=0.030 Sum_probs=167.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh--C-CCCCc-ChhhHHHHHH
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNF-SHNYDTYHSIIHKLARARAFDAVESLLTELKQ--N-PEIKC-GENLFITVIR 122 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~-~~~~~~~l~~ 122 (527)
+.-+++.|+.+.-+.+|+.+++..... ..-..+|..+..+|...+++++|++....=+. + -+... ....-..+..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456789999999999999998664421 11244678888888899999999887642111 0 01110 1223334555
Q ss_pred HHHhcCChhHHHHHHHHHH----hcCC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhhh
Q 043284 123 NYGLAGRPELAVKTFLRIE----KFNV-QRSVRSLNTLLNALVQNKR--------------------YDLVHLMFKNSRH 177 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~ 177 (527)
.+--.|.+++|+....+-+ +.|- .....++..+...|...|+ ++.|.++|..-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6666788888876543332 2221 1234456667777766543 1233344332111
Q ss_pred ---cCCC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcc----cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 178 ---KFKV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMP----SMGMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 178 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
..|. -.--..|..|.+.|.-.|+++.|+...+.-+ +-|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1010 0112345666666667889999987765432 22311 2235678888999999999999998876543
Q ss_pred ----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 249 ----RGW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----G-VEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 249 ----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
.|- .....+...|.+.|.-..+++.|+.++.+-... + ..-....+..+..++...|..++|+.+.+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 223445666788888888999999888764321 1 112456788899999999999999987776554
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.002 Score=52.91 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHc-----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 043284 184 NVFTCNILIKALCK-----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231 (527)
Q Consensus 184 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (527)
+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 45555555555543 3566666667777777777777777777776654
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00037 Score=47.01 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|++++|+++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444331 11333333444444444444444444444443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.45 E-value=0.0039 Score=54.71 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV----FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN----KTSF 467 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 467 (527)
.|......+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+++.- |+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 3444444445668888888888888876 3442 466778888888888888888888888642 33 3456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 468 SLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
..++.++...|+.++|.++++.+.+..|..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 666777888888888888888887776543
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.056 Score=45.84 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=89.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHH-----HH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISS-----TI 366 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 366 (527)
..+.++..+...+.+.-...+++++.+.+.+.++.....+++...+.||.+.|...|++..+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445566666677777777777777776666677777777777777888888888887666543232322222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTY 432 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 432 (527)
...|.-.+++..|...++++...++.++..-|.-+-+..-.|+..+|++.++.|.+. .|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 334455667777777777776656666666666555566667777788887777765 4444433
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.35 E-value=0.0054 Score=47.15 Aligned_cols=82 Identities=5% Similarity=-0.048 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..-+....+.|++++|++.|+.+....|..+-...+-..++.++.+.+++++|...+++..+..|..++. .|...+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHH
Confidence 3445566777788888888888888877777766677778888888888888888888888888876665543 233333
Q ss_pred HHH
Q 043284 122 RNY 124 (527)
Q Consensus 122 ~~~ 124 (527)
.++
T Consensus 90 ~gL 92 (142)
T PF13512_consen 90 RGL 92 (142)
T ss_pred HHH
Confidence 433
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.2 Score=49.20 Aligned_cols=348 Identities=11% Similarity=0.100 Sum_probs=179.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY---DLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
++.-+...+.+..|+++-..+-..-... ..+|.....-+.+..+. +-+..+-+++... .. ....|....+-..
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LT-PGISYAAIARRAY 518 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CC-CceeHHHHHHHHH
Confidence 3444555667777777766654321111 44555555555554321 1222222222211 12 3345666666666
Q ss_pred cCCChHHHHHHHHhcccCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 197 KKDDVEGAIRVLDEMPSMGMV----PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+...- +... .+....+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhch
Confidence 777777777766542222100 111123333444445555555555544444320 1111 111223455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHH----cCCCCCHHhHHHHHHHHHhcCCHhHH---
Q 043284 273 DAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNL-LDDMLQ----RKYVPSSALCCKVIDLLCEEGKVEDA--- 344 (527)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a--- 344 (527)
.|..+|.+..+.. |.. .+-..|.+..+...+-.+ ++.... .+..|+ ......++.+.....-.
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence 5666666655431 111 111222222222222111 111111 122222 22344445444332211
Q ss_pred -------HHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 345 -------CELWKRLLR-KNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 345 -------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
+++.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-+.+++..+++++-.++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHhhhhHHHHHHH
Confidence 122222221 12222333445556667788999999998888743 7888888888999999999987777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
-+.+. .+.-|..++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.+.--+- .
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~~-----r 797 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAEH-----R 797 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHHh-----c
Confidence 65543 245677788999999999999998876432 11 5667899999999998765542 3
Q ss_pred ChhhHHHHHHHHHhch
Q 043284 497 ESDSWNFLLTRIVSDL 512 (527)
Q Consensus 497 ~~~~~~~ll~~~~~~~ 512 (527)
|......++..+.++.
T Consensus 798 d~~~L~ev~~~~~~~~ 813 (829)
T KOG2280|consen 798 DGAELSEVLSKCTGAP 813 (829)
T ss_pred ChHHHHHHHHhcCCCC
Confidence 4445666666555443
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.14 Score=47.23 Aligned_cols=377 Identities=14% Similarity=0.116 Sum_probs=202.5
Q ss_pred HHHHHHH--HHHhcCCchHHHHHHHHhhhC--C--CCCcChhh--------H-HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 80 TYHSIIH--KLARARAFDAVESLLTELKQN--P--EIKCGENL--------F-ITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 80 ~~~~l~~--~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~~~--------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.|..+.. .+.+.+++.+|.+.+....+. . +.-.+..+ + ...+.+++..|++.+++.+++++...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3444443 345889999999999887765 1 11111111 1 234667789999999999999887653
Q ss_pred ----CCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHhhhcC-----CCCCChhhHHHHHHHHHcC--
Q 043284 145 ----VQRSVRSLNTLLNALVQNKR---------------YDLVHLMFKNSRHKF-----KVVPNVFTCNILIKALCKK-- 198 (527)
Q Consensus 145 ----~~~~~~~~~~l~~~~~~~g~---------------~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~-- 198 (527)
...+..+|+.++-.+.+.=- ++.+.-..+++.... .+.|.......++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 34788899987777665211 112222222222110 0112222222222221111
Q ss_pred CChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCChhH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVWRGDIENAKRVFGDILDRGWVP----DATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 273 (527)
.+..--.+++......-+.|+-. ....+...+.. +.+++..+.+.+....+.+ =..++..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11111222233222233344433 23334444433 6677777776666543211 24567788888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-------HHHHH-ccCC---HHHHHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcC
Q 043284 274 AVKVMDEMEDNGVEPNEVTYGVM-------IEAFC-KGKK---SGEARNLLDDMLQRKYVPSSALCCKV---IDLLCEEG 339 (527)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 339 (527)
|...+.-+... .|+...-..+ -+..+ ...+ ...=+.+++.+...++. .......+ ..-+-+.|
T Consensus 317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcC
Confidence 99988877765 3443322222 12222 1111 12223344444443222 11122222 23334455
Q ss_pred C-HhHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHHc---CCHHHHHHHHHHH-hcCCCC----CHHHHHHHHHH--H
Q 043284 340 K-VEDACELWKRLLRKNCMPDNAISSTII----HWLCKE---GKIWEAKKLFDEF-ERGSIP----SLLTYNTLIAG--M 404 (527)
Q Consensus 340 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~a~~~~~~~-~~~~~~----~~~~~~~l~~~--~ 404 (527)
. -++|+.+++.+.+-. .-|...-+.+. ..|.+. ..+.+-..+-+-+ ..+.+| +...-|.+..+ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 5 788999998887753 23443333322 223222 2233333332333 233333 44455666554 4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSL 469 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 469 (527)
...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 568999999876666653 589999999999999999999999999987 5677666553
No 215
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.088 Score=44.91 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+..+..-+....+.|++++|.+.|+.+..+.|. +....+...++-++-+.+++++|+..+++....-.......|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3445566666677889999999999999988444 345667778888999999999999999999887544344455555
Q ss_pred HHHHHhc-------CCH---HHHHHHHHHhhhcCC---CCCChhh-----------H-HHHHHHHHcCCChHHHHHHHHh
Q 043284 156 LNALVQN-------KRY---DLVHLMFKNSRHKFK---VVPNVFT-----------C-NILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 156 ~~~~~~~-------g~~---~~a~~~~~~~~~~~~---~~~~~~~-----------~-~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
|.+++.. .+. ..|..-|+.++.++. ..||... + ..+.+.|.+.|.+..|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6555542 233 355566666665521 1122211 1 2467889999999999999999
Q ss_pred cccCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 211 MPSMGMVPN---LVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 211 ~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
|++.- +-+ ...+-.+..+|...|-.++|...-.-+...
T Consensus 193 v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 193 VLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99862 212 235667788999999999999886666554
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.011 Score=46.74 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=38.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|+..|......+ ..|+..+.....++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 33444455555544444433222 33334444444444444555555444444333 2333334444444444455555
Q ss_pred HHHHHHHhhh
Q 043284 168 VHLMFKNSRH 177 (527)
Q Consensus 168 a~~~~~~~~~ 177 (527)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 5544444443
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.15 Score=46.34 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (527)
+..+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++..++... .-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455566555555554443 34555666666666666666655543321 11234455555666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
|...+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666665555541 1 12344555556665555444
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.23 E-value=0.22 Score=47.83 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...|..++..-....+.+.++..+..++...|. -.-.|...+..-.+.|..+.+.++|++.+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3446666665544445557777788877764443 334566666666788999999999999987 4677777777666
Q ss_pred HHHH-hcCCHHHHHHHHHHhhhcCCCC-CChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 157 NALV-QNKRYDLVHLMFKNSRHKFKVV-PNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 157 ~~~~-~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
..+. ..|+.+.....|+....-.|.. -....|...|..-..++++.....++++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5444 4678888889999887664432 23456788888778889999999999998874
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.18 E-value=0.013 Score=45.03 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
++..+..-+....+.|++++|++.|+.+..+.|. +....+...++.+|.+.|++++|+..+++..+.........|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4556666677777899999999999999988443 345667888999999999999999999999998644333445555
Q ss_pred HHHHHhcC
Q 043284 156 LNALVQNK 163 (527)
Q Consensus 156 ~~~~~~~g 163 (527)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55554433
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.18 E-value=0.013 Score=46.81 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=70.0
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG 128 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 128 (527)
......|+.+.+...++.++..-.|........ ..-.......++... ......++..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLRELY--------LDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcc
Confidence 344567889999999988876654432111000 011111122222221 224556677777888
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hcCCCCCChhhH
Q 043284 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSR----HKFKVVPNVFTC 188 (527)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 188 (527)
++++|+.+.+.+.... |.+...|..+|.+|...|+...|.+.|+.+. +..|+.|+..+-
T Consensus 77 ~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 77 DYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888888888888776 5677788888888888888888888887754 344777776553
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=97.17 E-value=0.042 Score=43.47 Aligned_cols=87 Identities=13% Similarity=-0.037 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
+...|++++|..+|.-+..-.+-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44566666666666666444445555566666666666666666666665554332 23333444556666666666666
Q ss_pred HHHHHHHH
Q 043284 450 RILEEMLD 457 (527)
Q Consensus 450 ~~~~~~~~ 457 (527)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666655
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.01 Score=48.93 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CCHHHHHHH
Q 043284 393 SLLTYNTLIAGMCE-----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI----------------GNAKEGIRI 451 (527)
Q Consensus 393 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~ 451 (527)
+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445555554443 244555555556666666666666666666654321 134557778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043284 452 LEEMLDKGCFPNKTSFSLLIEGLYESG 478 (527)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 478 (527)
+++|...|+.||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888877775554
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.13 Score=43.72 Aligned_cols=177 Identities=13% Similarity=0.102 Sum_probs=98.6
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|.+.+.+.-+..+.. ....++.........+..+++|++=.. .+...++..+.-.|.+.-
T Consensus 134 ~lgnpqesLdRl~~L~~----------~V~~ii~~~e~~~~~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~i 195 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKT----------VVSKILANLEQGLAEESSIRLWRKRLG--------RVMYSMANCLLGMKEYVL 195 (366)
T ss_pred hcCCcHHHHHHHHHHHH----------HHHHHHHHHHhccchhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhh
Confidence 34666666555554411 223333333333333555555554332 244456666666777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH-----HHHHHHcCCChHHHHHH
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI-----LIKALCKKDDVEGAIRV 207 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~ 207 (527)
.+.++.+..+...+.++.....+++.-.+.|+.+.|...|+++.+..+ .-+..+++. ....|.-.+++..|...
T Consensus 196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 788888887776666777777777777788888888888876654322 122222222 22334445566666666
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 208 LDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
+++....+. .|....|.-.-+..-.|+...|.+.++.|+..
T Consensus 275 ~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 275 FTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666655431 23333333333444456666666666666655
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.01 Score=53.66 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
+.-+..+++.|++..|...|++++..-....+. +.++.. ....+ -...++.++.++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~---------------~~ee~~-~~~~~--------k~~~~lNlA~c~ 267 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF---------------DEEEQK-KAEAL--------KLACHLNLAACY 267 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccC---------------CHHHHH-HHHHH--------HHHHhhHHHHHH
Confidence 445667888999999999998875332211110 001111 11111 122455566666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCCh-H
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDV-E 202 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~ 202 (527)
.+.+++..|++..++.+..+ +.|+.....-..++...|+++.|+..|+++.+. .|+... -+.++..-.+.... +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665 556666666666666666666666666666653 343333 33333333333332 2
Q ss_pred HHHHHHHhccc
Q 043284 203 GAIRVLDEMPS 213 (527)
Q Consensus 203 ~A~~~~~~~~~ 213 (527)
...++|..|..
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 33555555543
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.19 Score=46.12 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFN---VQRSVRSLNTLLNALVQ---NKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
+..+...++-+|....+++..+++.+.+...- +..+..+-...+-++.+ .|+.++|++++..+... ...+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChH
Confidence 44455566666777777888888777776641 12233333345555666 67777777777774333 2345666
Q ss_pred hHHHHHHHHHc---------CCChHHHHHHHHhccc
Q 043284 187 TCNILIKALCK---------KDDVEGAIRVLDEMPS 213 (527)
Q Consensus 187 ~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 213 (527)
+|..+.+.|-. ....++|++.|.+.-+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66666665432 1124555666555444
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.03 E-value=0.15 Score=47.82 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHH
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGG 229 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 229 (527)
+-..+..++-+.|+.++|++.|+++.+......+......|+.++...+.+.++..++.+..+...+.+ ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788899999999888876533222344667788888888999998888888755432222 3456655443
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.18 Score=46.29 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=46.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRK---YVPSSALCCKVIDLLCE---EGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
...++-+|-...+++..+++.+.+.... +.-....-...+.++.+ .|+.++|++++..+......+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776541 11122222334445555 67777777777775555556666777666
Q ss_pred HHHH
Q 043284 367 IHWL 370 (527)
Q Consensus 367 ~~~~ 370 (527)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6655
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.087 Score=44.24 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhc
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAG 68 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (527)
..|..-+..|...+++++|...+..+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345666666777788888888877774
No 229
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.98 E-value=0.0062 Score=41.61 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|.+.+++++|.++++++...+ +.+...|.....++...|++++|.+.|++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444555555554444431 11233334444444444555555555554444
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.04 Score=48.43 Aligned_cols=154 Identities=7% Similarity=-0.142 Sum_probs=79.5
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCC
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF-N--VQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~ 164 (527)
....|++.+|-..++++++..|. +-..+...=.+|.-.|+...-...++++... + +|-.........-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34456666666666666664332 4444555555666666666666666666543 2 11112222233344455666
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN---LVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
+++|++.-++..+. -+.|...-.++...+--.|++.++.+...+-...--..+ ...|=...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 66666666665543 122455555566666666666666666554332210001 1122223334455567777777
Q ss_pred HHHH
Q 043284 242 VFGD 245 (527)
Q Consensus 242 ~~~~ 245 (527)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 7764
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0019 Score=44.86 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccC---CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFH---PNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
.+..++.++...|++++|+..|+++++.. +...+. ..++..++.++...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678888888888888888888887441 111111 44667777777777777777777777654
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0029 Score=43.97 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 141 (527)
.++..+...+...|++++|++.|+++.+. ++..+. ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666666543 111111 2344455555556666666666655544
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.032 Score=47.92 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh-hhHHHH
Q 043284 115 NLFITVIRNYGLAGRPELAVKTFLRIEKFNV--QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV-FTCNIL 191 (527)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 191 (527)
..|...+. +.+.|++..|.+.|...++... .-...++..|..++...|+++.|...|..+.+.++-.|.. ..+-.|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 34444443 3355666666666666665421 1224455566666666666666666666666654444432 455556
Q ss_pred HHHHHcCCChHHHHHHHHhcccC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.14 Score=43.02 Aligned_cols=213 Identities=11% Similarity=0.097 Sum_probs=112.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 72 PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
|+...-...|..-..+|...+++++|...+.++.+-.. .+...| .... .++.|.-+.+++.+. +.-+..
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslf-hAAK------ayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLF-HAAK------AYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHH-HHHH------HHHHHHHHHHHHHHh--HHHHHH
Confidence 44444456677778888888999999988888775211 122222 2233 345666666666653 233445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC---C--CCCCHHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM---G--MVPNLVTHTTI 226 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~p~~~~~~~l 226 (527)
+......|..+|..+.|-..+++.-+. .+..++++|+++|++.... + ...-...+...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 666677788888887777666654321 1223344444444433211 0 00011223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHH
Q 043284 227 LGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV---EPNEVTYGVMIE 298 (527)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 298 (527)
.+.+.+...+++|-..+.+-... .--++ -..|...+-.+.-..|+..|.+.++.-.+.+- +-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 44555555565555444332111 00111 12244445555666788888888877443321 224566666776
Q ss_pred HHHccCCHHHHHHHH
Q 043284 299 AFCKGKKSGEARNLL 313 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~ 313 (527)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 66 356666665554
No 235
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.89 Score=51.16 Aligned_cols=153 Identities=11% Similarity=0.023 Sum_probs=79.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGM--VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
.+..+-.+.+.+.+|+..++.-..... ......|-.+...|...++++...-+...-.. +...+ ..+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455567777777777777311100 01222344444577777777777666553111 22222 23334556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
.|++..|...|+.+.+.+ ++...+++-++......|.++.++...+........-....++.-..+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 778888888888877663 2235566666666666666666665544443321111111222223333455555555554
Q ss_pred HH
Q 043284 348 WK 349 (527)
Q Consensus 348 ~~ 349 (527)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.024 Score=42.26 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc--ChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC--GENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 122 (527)
..-+-++...|+.+.|++.|.+++..-| .+..+|+.-..++.-.|+.++|++-++++.+..+... ....|..-..
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP---ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc---cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3445566677888888888888876665 4667888888888888888888888888877633321 1234555556
Q ss_pred HHHhcCChhHHHHHHHHHHhcC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.|...|+.+.|..-|+..-+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 6677788888888887777665
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.01 Score=47.38 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
..++..+...|++++|..+++++.... +-|...|..+|.++...|+..+|.+.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444444555555555555554431 2234445555555555555555555554443 2345554443
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.18 Score=41.59 Aligned_cols=180 Identities=15% Similarity=0.032 Sum_probs=87.1
Q ss_pred chHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 94 FDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFK 173 (527)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (527)
+.-|+--|.+.....|. -+.+|+.+...+...|+++.|.+.|+...+.+..-+ .+...-.-.+.--|+++-|.+-|.
T Consensus 81 ~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 34444444444444333 345677777777777777777777777777652222 222222223334577777776665
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH-HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 043284 174 NSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL-DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW- 251 (527)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 251 (527)
..-....-.|--..|--+.. ..-++.+|..-+ ++..+ .|..-|...+-.|.- |.+. ...+++++.....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 55543111221222222221 223445554433 33332 233333332222211 1111 0112222221110
Q ss_pred -----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 252 -----VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 252 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
..=+.||-.+..-+...|+.++|..+|+-....+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0124677778888888888888888888777653
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.045 Score=49.67 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=38.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
++.+.-++.+.+++..|++..++.++.+ ++|...+..=+.++...|+++.|+..|+++.+..|.+..+-..++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4445555555555666655555555543 234444444555555556666666666665555554444433333
No 240
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.69 Score=45.69 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=185.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 84 IIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR--PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
++.-+...+.+..|+++-+.+... ...+..+|......+.+..+ -+++++..++=.+.. -.....|..+..-...
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCc--cccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 355556678888888888877542 22235678888887777642 233333333333221 1344567788888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVP---NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
.|+++-|..+++.-.......| +..-+...+.-+.+.|+.+-...++-.+... .+...+.. ...+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHH------HHHhchh
Confidence 9999999998865432211111 1122333344455555555555555544432 11222221 1234455
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH--HHHHC-CCCCCHHHHHHHHHHHHccCCHH---HH---
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD--EMEDN-GVEPNEVTYGVMIEAFCKGKKSG---EA--- 309 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~---~a--- 309 (527)
|..+|.+..+.. +..+ +-+.| ..++-.++...|. ..... .+.+-..........+.+..... +|
T Consensus 591 a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 666666665531 1111 11122 2222222222221 10000 01111222233334444433311 11
Q ss_pred ----HHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 043284 310 ----RNLLDDMLQ-RKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFD 384 (527)
Q Consensus 310 ----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (527)
+++.+.+.. .+.....-+.+..+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 222222222 2222333445556677788899999988876653 5688888888999999999988777665
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 385 EFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
..+ .+.-|.-.+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 740 skk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhccHHHHHHHHHH
Confidence 543 3566888899999999999999998766422 1 466788899999988876544
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.2 Score=48.37 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH----------
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL---------- 394 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 394 (527)
..+...+...+.+...+..|-++|.++-.. ..+++.....++|.+|..+-++..+-. +|+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~-~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK-DDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc-ccccchHHHHhhh
Confidence 344444455555566677777777766321 356677777888888888777763322 121
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 395 -LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 395 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.-+...-.+|.+.|+-.+|.++++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11333445677778888888888877654
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=96.69 E-value=0.13 Score=47.99 Aligned_cols=148 Identities=9% Similarity=0.072 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHhc---ccCCCCCCCHHHHHHHHHHHHh---------cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 56 NLDLALQIFHYAG---KFHPNFSHNYDTYHSIIHKLAR---------ARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 56 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
..+.|..+|++++ ..+|+ ...+|..+..++.. ..+..+|.++.+++.+.++. |......+..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~--Da~a~~~~g~~ 347 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV--DGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 5678889999998 55553 34455544443332 12334566666666665444 55666666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
....|+++.|..+|++....+ |....+|......+.-.|+.++|.+.+++.................++.|+.. ..+.
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhh
Confidence 666777777777887777765 44455666666666667777777777777554311111122222233344333 3555
Q ss_pred HHHHHHh
Q 043284 204 AIRVLDE 210 (527)
Q Consensus 204 A~~~~~~ 210 (527)
|+.++-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 5555543
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.69 E-value=0.098 Score=49.88 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 87 KLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
...-.++++++.++.+.-.-.+.+ .......++..+-+.|-.+.|+++.+.-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344556677766655411111112 23445666777777777777776653321 2234556677777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
.|.++.++. ++...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+..
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777655333 2556777777777777777777777776543 345555666777777766666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
...| -++....++.-.|+.++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 234444555556777777666654
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.68 E-value=0.0052 Score=36.90 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
++..++.+|.+.|++++|+++++++.+..|.+...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4667778888888888888888888888877777776653
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.62 E-value=0.49 Score=42.43 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCH-----HHHHHHHHHHHhcC-CchHHHHHHHHhhhC----C---CCCcC----
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNY-----DTYHSIIHKLARAR-AFDAVESLLTELKQN----P---EIKCG---- 113 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~----~---~~~~~---- 113 (527)
..++|+++.|..++.++-...+...|+. ..+..++......+ +++.|..++++..+. . ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3578999999999999843332222221 12344444445566 788887777766543 1 11111
Q ss_pred -hhhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 114 -ENLFITVIRNYGLAGRPE---LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 114 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++..++.++...+..+ +|.++++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 122334445555444433 344444444332 1223444444455555556666666666666554
No 246
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.34 Score=46.85 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHH---------HhcccCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC
Q 043284 185 VFTCNILIKALCKKDDVEGAIRVL---------DEMPSMGMVPNLVTHTTILGGYVWRGDIE--NAKRVFGDILDRGWVP 253 (527)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~A~~~~---------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~ 253 (527)
...+.+-+..|...|.+++|.++- +.+... ..+.-.++..-.+|.+-.+.. +..--+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334455555677788887776541 111100 012223344444555544432 3333445666677666
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHH-----HHHHHHccCCHHHHHHHHHHHHH--cCCCCCH
Q 043284 254 DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTYGV-----MIEAFCKGKKSGEARNLLDDMLQ--RKYVPSS 325 (527)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 325 (527)
+... +...++-.|.+.+|-++|.+- |... -...|+- ...-+...|..++-..+.++-.+ .++...
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 6543 445666778888888887653 2110 0011111 12223333333333333332211 111111
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHH------HHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHH
Q 043284 326 ALCCKVIDLLCEEGKVEDACELWKR------LLR---KNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLT 396 (527)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (527)
....+.+...|+.++|..+.-+ +.+ +-...+..+...+...+.+...+.-|.++|.++-.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 1223444555665555543211 111 10122344455555556666777778888877722
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF-----------TYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
...+++.....+++++|..+-++.-+. .||.. -|...-++|.+.|+..+|..+++++..
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123556667778888888777766543 33432 133444567777777777777777654
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.21 Score=43.57 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=94.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
.......|++.+|..+|..+.+..+. +..+...++.+|...|+++.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 34456778888888888888876443 4556777888888888888888888887654211222222234555555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM--GMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
..+...+-.++-.. +.|...-..+...+...|+.+.|++.+-.+.+. |. -|...-..++..+...|.-+.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence 55555555554432 226666677778888888888888877766654 32 245556666766666664333
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.53 E-value=0.0046 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSII 85 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (527)
+..++..|.+.|++++|+++|+++++..|+ |+..+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 455667777777777777777777666663 555555443
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.50 E-value=0.065 Score=49.90 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=53.1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL---LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+...++.+..+|...|++++|...|++.....+.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566778888888889999999999988866555555 35888888999999999999999888875
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=1.2 Score=44.85 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
-++..+.+..+.+.++.+.+..-+. ++..|..++..+.+.+..+.-.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 3455566666777777666654432 6677888888888877544433
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.25 Score=47.93 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG--V-EPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.+.+.|.++++.+....|......-.-.+.+...|++++|++.|++..... . ......+--+...+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 455666677776655444444444444555566677777777777554310 0 1122344455566666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHHhcCCh-------hHHHHHHHHHHh
Q 043284 451 ILEEMLDKGCFPNKTSFSLLI-EGLYESGNE-------GEVGKVVSMATA 492 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 492 (527)
.|.++.+.. ..+..+|..+. .++...|+. ++|.+++.++..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777542 22333343332 233455666 666666666543
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.42 E-value=0.11 Score=46.34 Aligned_cols=235 Identities=9% Similarity=0.072 Sum_probs=139.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHH----HHhhhCCCCCcChhhHHHHHH
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLL----TELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~ 122 (527)
-+..+..+.+.++|+..+.+.+..-.+......++..+..+..+.|.+++++..- +.+.+.......-..|..+.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788889988888776443332333446677777888888887765432 222221111112345666777
Q ss_pred HHHhcCChhHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC----CChhhHHHHHHH
Q 043284 123 NYGLAGRPELAVKTFLRIEKF-NVQR---SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV----PNVFTCNILIKA 194 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~ 194 (527)
++-+.-++.+++.+-..-... |..+ .-.....+..++.-.+.++++++.|+.....-.-. .....+..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 776666777777776665543 2111 12344556677777888899988888765431111 123467888888
Q ss_pred HHcCCChHHHHHHHHhcccC----CCCCCHH-HHH-----HHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHhHH
Q 043284 195 LCKKDDVEGAIRVLDEMPSM----GMVPNLV-THT-----TILGGYVWRGDIENAKRVFGDILD----RGWV-PDATTYT 259 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~----~~~p~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~ 259 (527)
|.+..++++|.-+..+..+. ++. |.. .|. .+.-++...|....|.+.-++..+ .|-. ....+..
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 88888888887666554331 221 221 122 233355667777777776666543 3311 1233445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
.+.+.|...|+.+.|..-|++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 67788888888888887777654
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.35 E-value=0.065 Score=40.93 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA 194 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (527)
..|+..+..+++.+|+..|++..|.++.+.....++++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566666666666666666666666666666666655555666666543
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.30 E-value=0.094 Score=40.07 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 043284 391 IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQG 438 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 438 (527)
.|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 366777777777777777777777777766653 566566667666653
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.29 E-value=0.32 Score=36.68 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+.-.|..++..++..+... +.+..-++.++--....-+-+-..+.++.+-+.+++. ..|+...
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 3456888888888888876 3455666677666666666667777777766554332 2344444
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
....+-.+-. +.......+.....+|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-+
T Consensus 75 Vi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444433322 34455566667777788787778877776533 56777777778888888888888888888777
Q ss_pred CCC
Q 043284 284 NGV 286 (527)
Q Consensus 284 ~~~ 286 (527)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 764
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.23 E-value=0.42 Score=46.42 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh-----hhHHHHHHHHHc----CCChHH
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV-----FTCNILIKALCK----KDDVEG 203 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~ 203 (527)
..-+|.-+... +||. +..++....-.|+-+..++++....+..++.-.. ..|+..+..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44455555543 2333 3456666666777777777777765543333211 123444433332 446677
Q ss_pred HHHHHHhcccCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTI-LGGYVWRGDIENAKRVFGDILDRG--W-VPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
|.++++.+.+. -|+...|... .+.+...|+.++|++.|+...... . ......+--++-++.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888887775 3565555433 345566788888888888655321 1 1223344455666777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHHccCCH-------HHHHHHHHHHHH
Q 043284 280 EMEDNGVEPNEVTYGVMI-EAFCKGKKS-------GEARNLLDDMLQ 318 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 318 (527)
.+.+.. ..+...|..+. .++...++. ++|.++|.++..
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 887753 22334444333 234456666 778888877654
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.81 Score=40.07 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
....|++.+|..+|+..... .+.+...-..++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44455555555555555543 1223344445555556666666666666555443111111111112223333333333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
...+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22322222221 2244444445555555555555555444443
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.13 E-value=0.39 Score=36.21 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.++++++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444321 13344444444444444444444444444444444
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.13 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQGFCKIGNA 445 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 445 (527)
+....|+.+.|++.|.+.....|.....||.-.+++--.|+.++|++-+++..+..-.-.. ..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666777777776665555566666776666666666767766666666654111111 1222233344555666
Q ss_pred HHHHHHHHHHHHCC
Q 043284 446 KEGIRILEEMLDKG 459 (527)
Q Consensus 446 ~~A~~~~~~~~~~~ 459 (527)
+.|..-|+.+.+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=2 Score=43.27 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.+.....-+.++.+-.-++.|+.+-..- +.+...-.......+..+.+.|++++|...|-+.... ..|. .
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~ 402 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----E 402 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----H
Confidence 4556778888888889999999887654 2211111234455566667889999999988877653 2111 3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++.-|....+...-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... . |.. ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhC
Confidence 56666677777788888899988885 455556788999999999998887776554 1 111 112344555555555
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
-.++|.-+-.+... .......++ -..+++++|++.+..
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 55555554443332 222222222 234566666665544
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.94 E-value=0.74 Score=43.28 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=100.3
Q ss_pred CHhHHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 340 KVEDACELWKRLLRK-NCMPD-NAISSTIIHWLCK---------EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA 408 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (527)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+..++.....+.|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888832 12232 4444444444332 123556677777777778889998888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT---SFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~ 484 (527)
+++.|...|++.... .|| ..+|......+...|+.++|.+.+++.++. .|... .....++.|+..+ .++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 899999999999866 555 456666666777789999999999998874 45442 2333344566555 67888
Q ss_pred HHHHHHHh
Q 043284 485 KVVSMATA 492 (527)
Q Consensus 485 ~~~~~~~~ 492 (527)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87766433
No 262
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.94 E-value=2.3 Score=43.27 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=104.6
Q ss_pred hHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHhhhCCC-CCcCh---hhHHHHHHHHHhcCCh
Q 043284 58 DLALQIFHYAGKFHPNFSHN--YDTYHSIIHKLA-RARAFDAVESLLTELKQNPE-IKCGE---NLFITVIRNYGLAGRP 130 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~ 130 (527)
.-|++.++.+.+ +...+|. ..++..++..+. ...+++.|+..+++...... ..... .....++..+.+.+..
T Consensus 38 ~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456777777753 3333333 335666677666 67899999999998765421 11111 1122445666666555
Q ss_pred hHHHHHHHHHHhcCCC--CC--HHHHHHH-HHHHHhcCCHHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHH--cCCCh
Q 043284 131 ELAVKTFLRIEKFNVQ--RS--VRSLNTL-LNALVQNKRYDLVHLMFKNSRHKFK--VVPNVFTCNILIKALC--KKDDV 201 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~--~~--~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~ 201 (527)
. |...+++..+.--. .+ ...+..+ +..+...+++..|.+.++.+..... ..|....+..++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 88888887654211 11 2222222 2223334789989998888776532 2333444444544443 44556
Q ss_pred HHHHHHHHhcccCC---------CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMG---------MVPNLVTHTTILGGY--VWRGDIENAKRVFGDIL 247 (527)
Q Consensus 202 ~~A~~~~~~~~~~~---------~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 247 (527)
+++.+.++.+.... ..|-..+|..++..+ ...|+++.+.+.++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66766666552211 123455676666654 45777767766655543
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.93 E-value=0.61 Score=36.69 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
.++..+...+.......+++.+....+.+....+.++..|++.+ ..+.+..++. ..+.......++.|.+.+-
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444555555555555555553322345555566666665442 2333333331 1122333445566666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 445 AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYES-GNEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
++++..++.++.. +...+..+... ++.+.|.+++.+ ..++..|..++..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 6666666665422 11122222222 666666666665 2345566666553
No 264
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.86 E-value=1.7 Score=41.11 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=68.1
Q ss_pred CCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCChhhHH
Q 043284 426 EPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE--SGNEGEVGKVVSMATASGSVESDSWN 502 (527)
Q Consensus 426 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (527)
.|+..++ +.+++-+.+.|...+|...+..+... .+|+...|..++..-.. +-+...++++++.|......|+..|.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 4455444 45667777888889999999888875 34566667777655322 22377888889888887778888998
Q ss_pred HHHHHH--HhchhhhHHHHHHHHh
Q 043284 503 FLLTRI--VSDLDSGAGALDELLV 524 (527)
Q Consensus 503 ~ll~~~--~~~~~~a~~~~~~~l~ 524 (527)
.++... +|..+-+-.++-++++
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 888843 3766666666666543
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.82 E-value=0.63 Score=44.55 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043284 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWL 370 (527)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (527)
...+.++..+.+.|-.+.|+++..+-. .-.+...+.|+.+.|.++.+. ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555666666666666666533211 123444566666666655332 22555666666666
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.+.|+++-|+..|.+... +..|+-.|...|+.+.-.++.+.....|- ++....++...|+.++..+
T Consensus 358 L~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 666777777666666532 44555556666666666666555554431 3444445555566666665
Q ss_pred HHHH
Q 043284 451 ILEE 454 (527)
Q Consensus 451 ~~~~ 454 (527)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.71 E-value=3.4 Score=43.55 Aligned_cols=126 Identities=10% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhc-ccCCCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHhhhCCCCCcChhhHHHHH--
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAG-KFHPNFSHNYDTYHSIIHKLARA-RAFDAVESLLTELKQNPEIKCGENLFITVI-- 121 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-- 121 (527)
..+.-+..++++.+|.++.++-. ..+.-+..++..+..-+.++.+. ++.+--...+..+.+. .+ +...|....
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e-Dv--tk~~y~~~~~s 758 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEE-DV--TKTMYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccc-hh--hhhhccccccc
Confidence 34455567788888877765441 11122223344555555555544 3333333333333321 11 111111100
Q ss_pred --HHHHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhh
Q 043284 122 --RNYGLA----GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSR 176 (527)
Q Consensus 122 --~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 176 (527)
..|... .+.+...++++...... .|+ .....++..|.+.+ ..+.++....+..
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 011111 23334444444444433 344 44445667777766 5566666655554
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.71 E-value=0.36 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
..+.+.|...|+.+.|..-|+.+.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHH
Confidence 334555555666666555555443
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.67 E-value=1.3 Score=38.37 Aligned_cols=96 Identities=23% Similarity=0.186 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH-
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDN-GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVID- 333 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 333 (527)
..+......+...+++..+...+...... ........+......+...++...+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44444455555555555555555554431 1122334444444444455555555555555554322221 11111111
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 043284 334 LLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~ 352 (527)
++...|+++.+...+....
T Consensus 139 ~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 139 ALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555543
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.89 Score=36.25 Aligned_cols=129 Identities=11% Similarity=-0.072 Sum_probs=74.8
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh--hhHHHHHHHHHh
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE--NLFITVIRNYGL 126 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 126 (527)
--+.+.+..++|+.-|..+.+...+.-| ..+...........|+...|...|.++-...+.+.-. ..-....-.+..
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 3455677888888888877544333222 2233344555667778888888888777643322111 111122233456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.|.++....-.+-+...+-+-....-..|.-+-.+.|++.+|..+|+.+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6777777776666655443333444555666666777777777777777654
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=1.5 Score=38.99 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=55.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCHhH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC----CKVIDLLCEEGKVED 343 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~ 343 (527)
.|.+.+|-..++++.+. .+.|...+...=.++.-.|+.+.-...++++... ..++...| .....++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555543 2334445554445555555555555555555432 11122111 122223334555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 344 ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
|++.-++..+.+ +.|.....++...+.-.|++.++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555555544 234444455555555555555555554443
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.41 E-value=1.6 Score=37.75 Aligned_cols=225 Identities=20% Similarity=0.116 Sum_probs=158.8
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVE-PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLCEEGKVEDAC 345 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (527)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554221 13567777778888899999999888887753 23335556666777778888899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 346 ELWKRLLRKNCMPDNAISSTIIH-WLCKEGKIWEAKKLFDEFERGSI---PSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
..+.........+ ......... .+...|+++.+...+.......+ .....+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764433 122223333 78899999999999999844322 233444444555677889999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 422 EKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 422 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 762 22 3667788888888889999999999999875 344 445555666666777899999999998777654
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.34 E-value=2.1 Score=40.58 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
.+..++.+.|+.++|++.+.++.+..+. ....+...|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455555555555555555543222 122344445555555555555555555553
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=3.5 Score=41.29 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=15.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 475 YESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
.+.++.++|+++.++ ..|.+.|..++...
T Consensus 672 ~el~die~AIefvKe-----q~D~eLWe~LI~~~ 700 (846)
T KOG2066|consen 672 NELRDIEKAIEFVKE-----QDDSELWEDLINYS 700 (846)
T ss_pred HHhhCHHHHHHHHHh-----cCCHHHHHHHHHHh
Confidence 334555556655554 34566666666533
No 274
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=95.21 E-value=0.67 Score=40.11 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCC---CCCCHH--------HHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPN---FSHNYD--------TYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
......-++.+.-..|+..|+...++.++.-.+ ...+.. ....=|++++..|+|.++..+.-+.-+. |
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-p 113 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-c
Confidence 345677777788889999999998887643211 111111 1222366777788888887777666653 3
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ-----NKRYDLVHLMF 172 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 172 (527)
-+....+....|-.|.+.|.+..+.++-...+..--..+..-|..++..|.. .|.+++|+++.
T Consensus 114 EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 114 EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3445567777777788888888888777766653212223335555555443 57777777766
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.94 E-value=1.4 Score=34.61 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+.....++..+...+.+.....+++.+++.++ .++...+.++..+++.+ ..+..+.++. .. +......+
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-----~~yd~~~~ 75 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN--KS-----NHYDIEKV 75 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-----ccCCHHHH
Confidence 34556778888778888888888888865532 45667777788777653 3333344432 11 22234456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN-KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
++.|.+.+.++++.-++.++.. +...+..+... ++++.|.+.+.+. .+...|..++..+.
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 6777777777777777766532 12233333333 6677777666542 14556666665554
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.90 E-value=0.34 Score=42.56 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----cCCCCCChhhHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH----KFKVVPNVFTCNIL 191 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 191 (527)
++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.. ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555666666666666666666554 45555666666666666666666666655443 23555555555554
Q ss_pred HHH
Q 043284 192 IKA 194 (527)
Q Consensus 192 ~~~ 194 (527)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.89 E-value=0.31 Score=42.03 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----------------GDIENAKRVFGDILDRGWVPDATTYTVLM 262 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (527)
+.++-....++.|.+-|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444455555555566666666666665544321 11234455556666666666666655555
Q ss_pred HHHHhcC
Q 043284 263 DGYIKLG 269 (527)
Q Consensus 263 ~~~~~~g 269 (527)
+++.+.+
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 5555544
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=1.7 Score=34.80 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSV-RSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL- 191 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 191 (527)
...|...++ +.+.+..++|+..|..+.+.|...-+ -............|+...|...|+++-... |.+.....+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHH
Confidence 345555444 46788999999999999987743222 233345566778899999999999987652 222222222
Q ss_pred ----HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 192 ----IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 192 ----~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
.-.+...|.++....-.+.+...+-+.-...-..|.-+-.+.|++..|.++|.++....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22356789999998888888776644445556677777889999999999999988753
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.76 E-value=3 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043284 472 EGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~ 491 (527)
..+.+.+++++|.++++-+.
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888887643
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.70 E-value=0.04 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=22.7
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVE 98 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (527)
|+++++.+| .+..+|..+...+...|++++|+
T Consensus 2 y~kAie~~P---~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP---NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC---CCHHHHHHHHHHHHHCcCHHhhc
Confidence 455556666 36777888888888888877775
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.50 E-value=0.92 Score=32.48 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 446 KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
-+..+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-+..+..+....|..++..+.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 3566777777777888999999999999999999999999999887777665558888877543
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.34 E-value=1.3 Score=31.43 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 444 NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
|.-++.+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-...+.......|..++..+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 455677777888888888999999999999999999999999999876555545567887777543
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=0.97 Score=37.16 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCC-CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNP-EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
..+..++..|.+.|+.+.|.+.|.++.+.. +...-...+..+++.....|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777777777777777777766531 1112233556667777777777777776666544
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=0.55 Score=38.29 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
+-..+...+...|++++|..-++....... ......+-..+.+.....|.+++|+.+++.....+. .......-.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 344566677788888888888887775311 111122234567777888888888888887775432 23334455678
Q ss_pred HHhcCCHHHHHHHHHHhhhcC
Q 043284 159 LVQNKRYDLVHLMFKNSRHKF 179 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~ 179 (527)
+...|+-++|+.-|+......
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888877663
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.12 E-value=0.67 Score=40.78 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE-----KGVEPNVFTYNMLI 436 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 436 (527)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|+..|+++.. .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455666777777777777777777666777777777777777777777777777776654 46777666655554
Q ss_pred HH
Q 043284 437 QG 438 (527)
Q Consensus 437 ~~ 438 (527)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.10 E-value=0.54 Score=40.65 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----------------ChhHHHH
Q 043284 218 PNLVTHTTILGGYVW-----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG----------------RLTDAVK 276 (527)
Q Consensus 218 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~ 276 (527)
.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355666666655543 3556666777888888999999999999888775532 2334666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (527)
++++|...|+.||-.+-..+++++.+.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777665554
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.07 E-value=0.87 Score=37.26 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=62.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCc---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKC---GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
+.-+.+.|++++|..-|..++...|..+ ....|..-..++.+.+.++.|++-..+..+.+ +....+...-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4445677888888888877776522211 12345556667778888888888877777766 3444555566677777
Q ss_pred cCCHHHHHHHHHHhhhc
Q 043284 162 NKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~ 178 (527)
...+++|++-|+++...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888777764
No 288
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.05 E-value=2.3 Score=34.93 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPN-----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESG 478 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 478 (527)
...|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..++++.+ |+. ..+..-+.+|.+..
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 4445555555555555443 1111 1223333344455555555555555555533 321 22223344455555
Q ss_pred ChhHHHHHHHHHHhCCCCC
Q 043284 479 NEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~ 497 (527)
++++|++-|+++....|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 5566665555555555433
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.41 Score=42.01 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI----PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF 430 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 430 (527)
|...+..+...++..-....+++.+...+-++..... ++...+ ..++.+ -.-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344444445555555556677777777777643221 111111 122222 2235667777777777778888888
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
++..+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777776643
No 290
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.85 E-value=8.9 Score=39.36 Aligned_cols=297 Identities=11% Similarity=0.041 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH----HhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL----ARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
.....-...+...|.+.+|+..--.+ .++.....++.-+ ...++..-...+.+.+... -..-++...
T Consensus 348 ~lH~~Aa~w~~~~g~~~eAI~hAlaA--------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~-~l~~~P~Lv 418 (894)
T COG2909 348 ELHRAAAEWFAEHGLPSEAIDHALAA--------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE-LLASTPRLV 418 (894)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHhC--------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH-HHhhCchHH
Confidence 45666677777788888887776555 2344444444433 2334444444333333221 011112222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHhhhcCC---CCCChh
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-------SLNTLL-NALVQNKRYDLVHLMFKNSRHKFK---VVPNVF 186 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 186 (527)
..-+-......++++|..++.++...-..|+.. .++.+- ......|++++|.++-+....... ..+...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 222334456789999999998886542222211 222222 223346888999888877765411 223455
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH-----HHHHhcCChH--HHHHHHHHHHHCC--CC----C
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL-----GGYVWRGDIE--NAKRVFGDILDRG--WV----P 253 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~--~a~~~~~~~~~~~--~~----~ 253 (527)
.+..+..+..-.|++++|..+.....+..-.-+...+..+. ..+..+|+.. +.+..+....... -. +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66777778888999999998887766542223433333222 2345667332 2233333322210 01 1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCC----
Q 043284 254 DATTYTVLMDGYIKLGRLTDAVKVMDEM----EDNGVEPNEVTY--GVMIEAFCKGKKSGEARNLLDDMLQRKYVP---- 323 (527)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 323 (527)
-..++..++.++.+ ++.+..-.... ......|-.... ..++......|+.++|...+.++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 12334444555544 33333322222 222222222222 367778888999999999998887643222
Q ss_pred CHHhHHHHHH--HHHhcCCHhHHHHHHHH
Q 043284 324 SSALCCKVID--LLCEEGKVEDACELWKR 350 (527)
Q Consensus 324 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 350 (527)
+.......+. .....|+...+.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 23456777777766655
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.78 E-value=0.65 Score=38.16 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH--H
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI--T 119 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~ 119 (527)
..+..++..|.+.|+.+.|.+.|.++.....+...-...+..+++...-.+++..+...+.++........+...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34678999999999999999999999654444344466788899999999999999999988876521111211111 1
Q ss_pred H--HHHHHhcCChhHHHHHHHHHH
Q 043284 120 V--IRNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 120 l--~~~~~~~g~~~~A~~~~~~~~ 141 (527)
+ .-.+...|++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112234566666666665543
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.73 E-value=3.6 Score=34.39 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+.+||.+.-.+...|+++.|.+.|+...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 44455555555555555555555555443
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.70 E-value=4.5 Score=35.62 Aligned_cols=149 Identities=9% Similarity=0.114 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh-cC-ChhHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL-AG-RPELAVKTFLRIEKF-NVQRSVRSLNTLLN 157 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 157 (527)
|..++. +..-..+|+.+|+.......+-.+..+...+++.... .+ ....--++.+-+... +..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555542 3445778899998543212244577788888887776 22 222233333333332 34688888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh-----cccCCCCCCHHHHHHHHHHHHh
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE-----MPSMGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~p~~~~~~~l~~~~~~ 232 (527)
.++..+++.+-.++++......+...|...|..+|+...+.|+..-...+.++ +...|+..+...-..+-..+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999877655666888999999999999999999988876 3445666666666555555443
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.49 E-value=0.14 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
+..++..+...|++++|+..|+++++.+|.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 567788888888888888888888877663
No 295
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=11 Score=39.28 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHH--HHHHHhcCCchHHHHHHHHhhhC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSI--IHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
+..-+..+.+..++++|..+-+......|........-..+ +.-+..++++++|.+.|+++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 78888899999999999999887732222111001111111 12245789999999999998763
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.46 E-value=6.7 Score=36.67 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=44.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFERGS----IPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (527)
...++..++..+.+.|.++.|...+..+.... ...+.....-+......|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888874422 11334444456667777888888888887776
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.40 E-value=0.14 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
+..++..+...|++++|++.|+++++..|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 556788888888888888888888777663
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.34 E-value=5.9 Score=35.74 Aligned_cols=130 Identities=13% Similarity=0.173 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhcCCCC--CChhhHHHHHHHHHcCCCh
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ--NK----RYDLVHLMFKNSRHKFKVV--PNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 201 (527)
+++.+.+++.+.+.|+..+..+|.+....... .. ...+|..+|+.|++.+..- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888887777666553333333 12 2356777888887764322 223334444322 22222
Q ss_pred ----HHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043284 202 ----EGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGD--IENAKRVFGDILDRGWVPDATTYTVL 261 (527)
Q Consensus 202 ----~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (527)
+.+..+|+.+.+.|+..+-. ....++..+....+ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555555443322 22222221111111 23455555666666555555444433
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.33 E-value=4.9 Score=36.95 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=47.0
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCC------------chHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARA------------FDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
|++.++.+| .|..+|..++..--..-. .+.-+.+++++++..| .+...+...+..+.+..+.+
T Consensus 8 l~~~v~~~P---~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np--~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 8 LNRRVRENP---HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP--DSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHhCc---ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHH
Confidence 444545565 477788887765543322 2334455555555422 24445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
+..+.++++.... +.+...|...+...
T Consensus 83 ~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 83 KLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 5555565555543 23444554444433
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.32 E-value=0.25 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 467 FSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
+..++..+...|++++|++.++++.+..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4455555556666666666666555444
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.30 E-value=3.4 Score=32.85 Aligned_cols=53 Identities=15% Similarity=-0.063 Sum_probs=29.5
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+.++.+++..++..+.--.|.....-..-...++..|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666664333333333333344556667777777777776554
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.28 E-value=0.22 Score=28.11 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=10.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.17 E-value=0.23 Score=28.04 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
++..|+..|.+.|++++|+++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.95 E-value=0.53 Score=43.85 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=83.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
+.-....|+...|-+-+....+.. +-++.........+...|+++.+...+............+..++++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 334445677776665555544432 2233333344455677889999888888776655566677788888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+|..+-.-|....+. ++.............|-++++...|++....+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999888888876554 44444433444455677888888888887643
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.84 E-value=4.7 Score=33.16 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIP---SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
..+...+++++|+..++........ ....--.|.+.....|.+++|+.+++...+.+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3455556666666655544221111 111122344455555666666666655543321 12222333345555566
Q ss_pred HHHHHHHHHHHHHC
Q 043284 445 AKEGIRILEEMLDK 458 (527)
Q Consensus 445 ~~~A~~~~~~~~~~ 458 (527)
-++|+.-|++.+..
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.64 E-value=0.3 Score=43.30 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=69.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
..-|.++|.+++|+..|.+.+.. .| |++++..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999888754 66 88888889999999999998888777776532 0012234444444455688
Q ss_pred hhHHHHHHHHHHhCCCCCh
Q 043284 480 EGEVGKVVSMATASGSVES 498 (527)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~ 498 (527)
..+|.+-++.+.+..+.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8888888888877765533
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.61 E-value=4.6 Score=32.56 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 135 KTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMF 172 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 172 (527)
+.++.+.+.+++++...+..+++.+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555566666666666777777766666655554
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=1.4 Score=42.51 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=57.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
...+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+
T Consensus 646 lal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 3445666776666654432 445567777777777777777777765443 334555555666665
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 710 ~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 555555555444421 2223345556777776666654
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.32 E-value=13 Score=37.19 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.7
Q ss_pred CHhHHHHHHHHHHhCC
Q 043284 340 KVEDACELWKRLLRKN 355 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~ 355 (527)
+...|.++|..+.+.|
T Consensus 343 d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 3445555555555554
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.20 E-value=5 Score=31.96 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 043284 265 YIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~ 283 (527)
+...|++.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555554443
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.14 E-value=0.17 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 390 SIPSLLTYNTLIAGMCESAELTEA 413 (527)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~a 413 (527)
.|.+...|+.+...|...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555555544
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.01 E-value=19 Score=38.37 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF--TYNMLIQGFCKIGN 444 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 444 (527)
...+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+...++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455667777666666521 122456677778888888777766432 1222 12456677777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 445 AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
.-+|-++..+.... |. ..+..|++.-.+++|.++.....
T Consensus 1015 h~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 88887777776542 21 22233556666777776666543
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.88 E-value=12 Score=35.78 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043284 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLM 262 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (527)
.|....-+++..+..+..+.-...+-.+|..-| -+...|..++.+|..+ ..+.-..+|+++.+..+. |+..-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 345555666666666666666666666666654 3555666667776666 445556666666665433 333333344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHH
Q 043284 263 DGYIKLGRLTDAVKVMDEMEDNGVEP--N---EVTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLC 336 (527)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 336 (527)
..|-+ ++.+.+...|.++...-++. + ...|..+.... ..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 66666666666665432210 1 12333333211 34455555555555442 22222333444445556
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
...++++|++++..+.+.+-+ |...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 666666666666666665422 4444444443
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.74 E-value=16 Score=36.73 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHH----H-HHcCCChHHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHh
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIK----A-LCKKDDVEGAIRVLDEMPS-------MGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~ 232 (527)
...+..+++...... +...-..+.. + +....+.+.|+.+|..+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 345666666665542 2222222222 2 3345677777777777655 33 22344455555555
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----c
Q 043284 233 RG-----DIENAKRVFGDILDRGWVPDATTYTVLMDGYIK-LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFC----K 302 (527)
Q Consensus 233 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 302 (527)
.. +.+.|..++....+.|. |+.......+..... ..+...|.++|......|. ...+..+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 32 45667777777666652 233222222211111 2355677777777776652 222222222222 2
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 043284 303 GKKSGEARNLLDDMLQRK 320 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~ 320 (527)
..+...|..++.+..+.|
T Consensus 377 ~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 335566666666666665
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.69 E-value=1.2 Score=39.70 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-+.-|+++|.+++|+..|...+...| .|+..+.....+|.+..+|..|..-...+...+. .-...|..-+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P---~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP---HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC---CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHH
Confidence 4556667788888888888887765554 4677777778888888888877776666655311 1223444444444
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 043284 125 GLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~ 143 (527)
...|+..+|.+-++..+..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 4556666676666666665
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.62 E-value=0.41 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=12.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|..+..++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444455555554444444
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.44 E-value=3.7 Score=29.56 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 343 DACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++....+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 555666666666777777777777777777777777777777774333333335555543
No 318
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=15 Score=34.98 Aligned_cols=415 Identities=12% Similarity=0.040 Sum_probs=219.8
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH-HhcCCchHHHHHHHHhhhCCCCCcC-----hhhH
Q 043284 46 RLVSMIFRQQ--NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL-ARARAFDAVESLLTELKQNPEIKCG-----ENLF 117 (527)
Q Consensus 46 ~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~ 117 (527)
.+++.+..+| +...+++.++......+.......+...++..+ ....+++.|..-++++......-|+ -..+
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 4556666777 888999999888777665443444555555543 3568899998888877654211112 2345
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 118 ITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSV---RSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...|.... .+..+..++++..+..-.... .....++..+.-..++..|.+++.---.. ..+-...|.-++.
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s--Ad~~~~~ylr~~f 169 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES--ADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc--cchhhhHHHHHHH
Confidence 56667777666 788899999888775311111 22334666777788899998886433221 1222233322222
Q ss_pred H------HHcCCC---hHHHHHHHHhcccCCCCCCHHH------H--HHHHHHHHhcCChHHHHHHHHHHHHC---CC--
Q 043284 194 A------LCKKDD---VEGAIRVLDEMPSMGMVPNLVT------H--TTILGGYVWRGDIENAKRVFGDILDR---GW-- 251 (527)
Q Consensus 194 ~------~~~~~~---~~~A~~~~~~~~~~~~~p~~~~------~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 251 (527)
. ..-..+ +..+.....++.+. ..+|..- | +.-+..|...|+...+...++++.+. +.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 1 222233 34444444555543 3344322 1 12233455678888887777776542 11
Q ss_pred ----------CCCHHhHHHHHH-------------HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHH--------HH
Q 043284 252 ----------VPDATTYTVLMD-------------GYIKLGRLTDAVKVMDEMEDN----GVEP-NEVTY--------GV 295 (527)
Q Consensus 252 ----------~~~~~~~~~l~~-------------~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~--------~~ 295 (527)
.|....+..+.. .-.-.|-+++|.++-+++... .-.+ ....+ ..
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 122222211111 011234455555554444321 1111 22222 22
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC-CCCCHH--------hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH--H
Q 043284 296 MIEAFCKGKKSGEARNLLDDMLQRK-YVPSSA--------LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS--S 364 (527)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 364 (527)
++.+-.-.|++.+|++-+.+|.+-- -.|.+. .-..+...+...+.++.|..-|....+.-...|...+ .
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2233345789999999888887621 122211 1112233345568888888888877765333343333 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH------H--HHH--HHHhcCCHHHHHHHHHHHHHcCCCCC-----H
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN------T--LIA--GMCESAELTEAGRLWDDMVEKGVEPN-----V 429 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~-----~ 429 (527)
.+...|.+.|+.+.-.++++.+.. ++..++. . ++. .....+++.+|..++.+-.+..-.-| .
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p---~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGP---LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCC---CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 345568888887777777777622 2222211 1 111 12467899999998887665321111 1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDK-GCFPNKTS 466 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 466 (527)
-....|...+...|+..++.+...-.... ...||..+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 12233334556678888887766655421 12356543
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.92 E-value=10 Score=32.96 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=94.4
Q ss_pred CCchHHHHHHHHhhhCCCCC--cChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCC
Q 043284 92 RAFDAVESLLTELKQNPEIK--CGENLFITVIRNYGLAGRPELAVKTFLRIEKF---NV--QRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~ 164 (527)
.+.++|+.-|+++.+..|-. ..-.++-.++....+.|++++..+.+.+++.. .+ .-+....+.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 45566666666665543221 12223445566666666666666666665431 11 1234455666665555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChh----hHHHHHHHHHcCCChHHHHHHHHhcccCCC----CCC-------HHHHHHHHHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVF----TCNILIKALCKKDDVEGAIRVLDEMPSMGM----VPN-------LVTHTTILGG 229 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~p~-------~~~~~~l~~~ 229 (527)
.+-..++++.-.......-|.. +-..|...|...+.+.+..+++.++..... .-| ...|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5544444443221111111211 224466667777777777777776654211 011 2356666667
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHHhHHHHH----HHHHhcCChhHHHH
Q 043284 230 YVWRGDIENAKRVFGDILDRG-WVPDATTYTVLM----DGYIKLGRLTDAVK 276 (527)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~ 276 (527)
|....+-.....+|++.+... .-|.+.....+- .++.+.|++++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 777777777777777665431 233433333221 23345677777654
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.86 E-value=15 Score=34.85 Aligned_cols=122 Identities=9% Similarity=-0.030 Sum_probs=80.1
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP 130 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 130 (527)
....|+...|.+-...+++..|+.+ + ............|+++.+...+..+... +.....+...+++.....|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p-~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDP-V--LIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCc-h--hhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 3456777777666666666666532 2 3333344456778888888888777654 222555667778888888888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+.|..+-+-|+...+ .+++.........-..|-+|++...|+++...
T Consensus 374 ~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 888888888877654 34444444444455567788888888777543
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.59 E-value=3 Score=34.53 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=58.4
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN---VQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 164 (527)
+.+.| -+.|...|-.+...+. --++.....++..|. ..+.+++++++.+.++.. -.+|+..+.+|+..+.+.|+
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44444 5678888888877533 345556666666554 778999999998887752 25678999999999999999
Q ss_pred HHHHH
Q 043284 165 YDLVH 169 (527)
Q Consensus 165 ~~~a~ 169 (527)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99875
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.50 E-value=14 Score=33.98 Aligned_cols=78 Identities=6% Similarity=-0.007 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHH
Q 043284 378 EAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK---IGNAKEGIRILEE 454 (527)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 454 (527)
.-+.+++++.+..+.+...+..++..+.+..+.++..+-|+++.... +-+...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34445555544455555566666666666666666666666666541 1134445554443322 2235555555555
Q ss_pred HH
Q 043284 455 ML 456 (527)
Q Consensus 455 ~~ 456 (527)
.+
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 54
No 323
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.49 E-value=8.1 Score=31.20 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 206 RVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
++++.+.+.+++|+...+..++..+.+.|.+.... +++..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 34444445556666666666666666666544333 2333344344333332221111 1222233322222221
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 286 VEPNEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
=...+..++..+...|++-+|..+.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344555556666666666665553
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.40 E-value=0.34 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHP 72 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (527)
..++.++.+.|++++|++.|+.+++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3566777777777777777777766655
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.23 E-value=16 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVP---NLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
...+|..++..+.+.|.++.|...+..+...+... +......-++..-..|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777888888877777776643111 233344445556667777777777777666
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.92 E-value=25 Score=35.87 Aligned_cols=89 Identities=9% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhc--
Q 043284 262 MDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK-YVPSSALCCKVIDLLCEE-- 338 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-- 338 (527)
...+.-.|.++.|++.+-+. .+...+..++...+..|.-.+-.+... ..+.... ..|..--+..++..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34555678888888887661 112334455444444332222111111 2222111 011114466677777653
Q ss_pred -CCHhHHHHHHHHHHhCC
Q 043284 339 -GKVEDACELWKRLLRKN 355 (527)
Q Consensus 339 -~~~~~a~~~~~~~~~~~ 355 (527)
.+...|.+++-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 57778888887766543
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.91 E-value=13 Score=32.83 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=94.7
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043284 132 LAVKTFLRIEK-FNVQRSVRSLNTLLNALVQN-K-RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 132 ~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
+|+.+|+.... ..+-.|..+...+++..... + ....-.++.+-+...++..++..+....+..+++.+++.+-.+.+
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 35555553221 12345666666666666652 2 333334445555555566778888899999999999999999999
Q ss_pred HhcccC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHhHHHHHHHHHh
Q 043284 209 DEMPSM-GMVPNLVTHTTILGGYVWRGDIENAKRVFGD-----ILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 209 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
+..... +...|...|..+++.....|+..-..++.++ +.+.++..+...-..+-+.+.+
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 987765 5667899999999999999998887777664 3455677777766666555544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=5.5 Score=38.77 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
......++..+-++|-.++|+++-. |+. .-.....+.|+++.|.++..+.. +..-|..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~-----------D~d---~rFelal~lgrl~iA~~la~e~~-------s~~Kw~~L 672 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST-----------DPD---QRFELALKLGRLDIAFDLAVEAN-------SEVKWRQL 672 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC-----------Chh---hhhhhhhhcCcHHHHHHHHHhhc-------chHHHHHH
Confidence 3455678888888998888887631 221 22344567799999988877654 34568899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..+..+.|++..|.+.|.+..+. ..|+-.+...|+-+....+-....+. |. +.. ...+|...|+
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~-g~--~N~----AF~~~~l~g~ 736 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ-GK--NNL----AFLAYFLSGD 736 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh-cc--cch----HHHHHHHcCC
Confidence 99999999999999999887754 36777777788777666555555544 22 222 2235667899
Q ss_pred hHHHHHHHHhccc
Q 043284 201 VEGAIRVLDEMPS 213 (527)
Q Consensus 201 ~~~A~~~~~~~~~ 213 (527)
++++.+++..-..
T Consensus 737 ~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 737 YEECLELLISTQR 749 (794)
T ss_pred HHHHHHHHHhcCc
Confidence 9999988876543
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.72 E-value=15 Score=33.18 Aligned_cols=127 Identities=8% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHhcCC--
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVW--RG----DIENAKRVFGDILDRGW---VPDATTYTVLMDGYIKLGR-- 270 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 270 (527)
++.+.+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++..+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666665555443322222 11 24456667777766532 1233333333322 2222
Q ss_pred --hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 271 --LTDAVKVMDEMEDNGVEPNE--VTYGVMIEAFCKGKK--SGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 271 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
.+.+..+|+.+.+.|...+. .....++........ ...+.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 24455556666665554332 222222222221111 2245556666666665555444443
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.58 E-value=26 Score=35.73 Aligned_cols=436 Identities=13% Similarity=0.145 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCHH---
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYG-LAGRPELAVKTFLRIEKFNVQRSVR--- 150 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~--- 150 (527)
....|..++. .|++.++.+.+....+|. ..+...++..+. ...+++.|...+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4556666654 467788877754344433 345566777766 7799999999999886543233221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC---CCChhhHHHH-HHHHHcCCChHHHHHHHHhcccCC---CCCCHH
Q 043284 151 --SLNTLLNALVQNKRYDLVHLMFKNSRHKFKV---VPNVFTCNIL-IKALCKKDDVEGAIRVLDEMPSMG---MVPNLV 221 (527)
Q Consensus 151 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~ 221 (527)
....++..+.+.+... |...+++....... .+-...|..+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666655 88888887665322 1122233333 333334489999999998876542 123344
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHHC---C
Q 043284 222 THTTILGGYV--WRGDIENAKRVFGDILDRGW---------VPDATTYTVLMDGYI--KLGRLTDAVKVMDEMEDN---G 285 (527)
Q Consensus 222 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~---~ 285 (527)
++-.++.+.. +.+..+++.+.++.+..... .|...+|..+++.++ ..|+++.+...++++.+. .
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4444444433 45667777777777643211 335566777766544 567777777666554321 0
Q ss_pred -CC--------------------------CCHHHH---------HHHHH--HHHccCCHHHHHHHHHHHHH--------c
Q 043284 286 -VE--------------------------PNEVTY---------GVMIE--AFCKGKKSGEARNLLDDMLQ--------R 319 (527)
Q Consensus 286 -~~--------------------------~~~~~~---------~~l~~--~~~~~~~~~~a~~~~~~~~~--------~ 319 (527)
-. +....| ..++. ..+..+..+++.+++++..+ .
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 00 111111 11111 22334544455555544322 1
Q ss_pred CCCCCH--------HhHHHH---------HHHHHhcCCHhHHHHHHHHHHhCCC-CCC-------HhhHHHHHHHHHHcC
Q 043284 320 KYVPSS--------ALCCKV---------IDLLCEEGKVEDACELWKRLLRKNC-MPD-------NAISSTIIHWLCKEG 374 (527)
Q Consensus 320 ~~~~~~--------~~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~ 374 (527)
...+.. ..+... +-..+-.+++..+...++.+..... .|+ +..+....-.+...|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 111111 111111 1223456889899999988876421 111 222333334455679
Q ss_pred CHHHHHHHHH-------HH--hcCCCCCHHHHHH--HHHHHHh--cCCHHH--HHHHHHHHHHc-CCCCC--HHHHHHH-
Q 043284 375 KIWEAKKLFD-------EF--ERGSIPSLLTYNT--LIAGMCE--SAELTE--AGRLWDDMVEK-GVEPN--VFTYNML- 435 (527)
Q Consensus 375 ~~~~a~~~~~-------~~--~~~~~~~~~~~~~--l~~~~~~--~~~~~~--a~~~~~~~~~~-~~~p~--~~~~~~l- 435 (527)
+.+.|...|. .. ..+...+..++.. ++..+.. ....++ +.++++.+... .-.|+ ..++..+
T Consensus 419 ~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~ 498 (608)
T PF10345_consen 419 DLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLV 498 (608)
T ss_pred CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHH
Confidence 9999999998 33 2222223333222 1112222 222233 66777766542 11222 2333333
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHHC---CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCChhhHHH
Q 043284 436 IQGFCKI--GNAKEGIRILEEMLDK---GCFPNK---TSFSLLIEGLYESGNEGEVGKVVSMATA----SGSVESDSWNF 503 (527)
Q Consensus 436 ~~~~~~~--g~~~~A~~~~~~~~~~---~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 503 (527)
+.++... -...++...+.+.++. ....+. .+++.+...+. .|+..+..+....+.. ........|..
T Consensus 499 ~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~ 577 (608)
T PF10345_consen 499 LATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHL 577 (608)
T ss_pred HHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3333221 1223555555444321 111121 22333333344 6777776555554333 32234557755
Q ss_pred HHHHH-------HhchhhhHHHHHHHH
Q 043284 504 LLTRI-------VSDLDSGAGALDELL 523 (527)
Q Consensus 504 ll~~~-------~~~~~~a~~~~~~~l 523 (527)
+...+ .|+.++|....++.-
T Consensus 578 v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 578 VASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 55522 288888888777654
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=7.7 Score=34.50 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH
Q 043284 144 NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK--VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV 221 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 221 (527)
|.+....+...++..-....+.+.+...+-+++.... ..|+.. -...++.+. .-+.++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444455555555555556677777777766654311 112211 122333333 345668888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
+++.++..+.+.+++.+|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776553
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=13 Score=31.61 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
+...-+..+++.+|+++|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444566777777777777665433
No 333
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.04 E-value=3.7 Score=30.82 Aligned_cols=62 Identities=6% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
+..+-++.+...++.|++.....-++++.+.+++..|.++|+-+..+..+....|..++..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45566667777778888888888888888888888888888887666655555566666633
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.92 E-value=15 Score=31.97 Aligned_cols=157 Identities=10% Similarity=0.092 Sum_probs=83.1
Q ss_pred cCCChHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC---C--CCCCHHhHHHHHHHHHhc
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNL---VTHTTILGGYVWRGDIENAKRVFGDILDR---G--WVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 268 (527)
+...+++|+.-|.+.++....... .....++....+.|++++....|.+++.. . -.-+..+.|.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345778888888877665322222 23455677777788888887777776532 0 112344556666655555
Q ss_pred CChhHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CC-------HHhHHHHH
Q 043284 269 GRLTDAVKVMDEMEDN-GVEPNE----VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV----PS-------SALCCKVI 332 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~ 332 (527)
.+.+-....|+.-.+. .-..+. .|-..+...|...+.+.+..++++++..+--. .| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5554444444432211 001121 23344566666666666666666666543111 01 13344445
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 043284 333 DLLCEEGKVEDACELWKRLLR 353 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~ 353 (527)
+.|...++-.....++++...
T Consensus 199 QmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH
Confidence 556666666666666665543
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.64 E-value=13 Score=30.96 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK---GCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 411 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
+.|.+.|-.+...+.--++.....|...|. ..|.++++.++.++++. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555554443334444444444333 34556666666555532 22345556666666666666666553
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.56 E-value=7.1 Score=27.85 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLI 401 (527)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (527)
.-++.+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++.....+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3445556666666666667777777777777777777777777766433333334454443
No 337
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.22 E-value=32 Score=35.04 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHhc
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR-------PELAVKTFLRIEKF 143 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 143 (527)
......++..|.++|++++|.++....... .......|...+..|....+ -++...-|++....
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 334556666777888888888888554442 12234456666676665422 23445555555544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.09 E-value=0.94 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 469 LLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
.++.++.+.|++++|.+.|+++.+..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34555555566666666666555443
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.99 E-value=1.4 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 465 TSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
.+++.|+..|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888887777644
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.98 E-value=11 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.0
Q ss_pred HhcCCHHHHHHHHHHhh
Q 043284 160 VQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~ 176 (527)
...|++++|..+|+++.
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 33444444444444443
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.83 E-value=4.2 Score=32.97 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=13.9
Q ss_pred hhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Q 043284 57 LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL 88 (527)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (527)
++.|++.++.....+|. |...++.-+.++
T Consensus 7 FE~ark~aea~y~~nP~---DadnL~~WG~AL 35 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL---DADNLTNWGGAL 35 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH---hHHHHHHHHHHH
Confidence 45666666665555553 444444433333
No 342
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.77 E-value=37 Score=35.20 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=115.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMI-EAFCKGKKSGEARNLLDDMLQR----KYVPSSALCCKVID 333 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 333 (527)
....++.+|..+..++...-..|+. ..++.+- ......|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3567888888888777654222222 1222222 1234578888888888776653 12234455566677
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHH---HH--HHHHHHcCC--HHHHHHHHHHHhc----CCC---CCHHHHHH
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISS---TI--IHWLCKEGK--IWEAKKLFDEFER----GSI---PSLLTYNT 399 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~--~~~a~~~~~~~~~----~~~---~~~~~~~~ 399 (527)
+..-.|++++|..+.....+....-+...+. .+ ...+...|+ ..+....|..... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777899999988887766542222332222 22 233455663 2333333443311 111 12234445
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 043284 400 LIAGMCES-AELTEAGRLWDDMVEKGVEPNVFTY--NMLIQGFCKIGNAKEGIRILEEMLDKGCFP----NKTSFSLLIE 472 (527)
Q Consensus 400 l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 472 (527)
++.++.+. +...++..-+.--......|-...+ ..|+......|+.++|...+.++......+ +.......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1122222222222222112222222 366777788899999998888887532222 2222222332
Q ss_pred H--HHhcCChhHHHHHHHH
Q 043284 473 G--LYESGNEGEVGKVVSM 489 (527)
Q Consensus 473 ~--~~~~g~~~~A~~~~~~ 489 (527)
. ....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 3356888888777766
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.61 E-value=28 Score=33.56 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
.|....-+++..+.++-.+.-+..+-.+|+.-| -+...+..++++|... ..+.-..+|+++.+..+. |...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666666666666666666666666643 2445566666666666 446666677766665433 333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPS------LLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 440 (527)
..|.+ ++.+.+...|.++.....|. ...|..+... -..+.+..+.+...+... |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 66666666666653322221 1233333221 123445555555444432 22222333344444555
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 043284 441 KIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~ 458 (527)
...++++|++++...++.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 555666666666655554
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.58 E-value=3.7 Score=34.35 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~ 121 (527)
+.+..++.+.+.+++.+|++..+.-++.+| .+...-..++..++-.|+|++|..-++.+....+ ..+....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP---tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP---TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC---ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345566777788888888888877766666 3555666777778888888888887777766422 223344555555
Q ss_pred H
Q 043284 122 R 122 (527)
Q Consensus 122 ~ 122 (527)
.
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=36 Score=34.68 Aligned_cols=105 Identities=8% Similarity=0.011 Sum_probs=52.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+..+.+.+.+++|+.+.+......+...-..+....+..+...|++++|-...-.|.. .+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 4445555666666666665544322111233455566666666777776666666652 344455555555555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK 197 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (527)
......++ ... ....+...|..++..+..
T Consensus 439 l~~Ia~~l---Pt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYL---PTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccC---CCC-CcccCchHHHHHHHHHHH
Confidence 44433222 111 111234456666655554
No 346
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.18 E-value=36 Score=34.40 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=16.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 232 WRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
-.|+...+++....+.. |..+-..+.+.+...|-.+
T Consensus 309 ~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 309 FEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred HccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccc
Confidence 36777777766654421 3334444555555555444
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.97 E-value=13 Score=29.16 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 373 EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.++.+++..+++.+.--.|.....-..-...++..|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 556666666666653322222222222334445666666666666666654
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.90 E-value=0.91 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFH 65 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~ 65 (527)
..++..+..+|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.81 E-value=71 Score=37.41 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHH-HHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIH-KLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
..++.+-.+++.+.+|.-.+++-...... ....+.+..++. .|...++++...-+...-.. +...+. -+..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~-~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~-qil~ 1458 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKE-KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQ-QILE 1458 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccch-hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHH-HHHH
Confidence 36777889999999999999984111111 112334444444 89999999998888775222 222333 3444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-HHHHHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL-IKALCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 202 (527)
....|++..|...|+.+.+.+ ++....++.++......|.++.+....+-.... ..+....++.+ +.+--+.++++
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchh
Confidence 567899999999999999886 455777888888888889998888877666544 23333334433 34445667777
Q ss_pred HHHHHHH
Q 043284 203 GAIRVLD 209 (527)
Q Consensus 203 ~A~~~~~ 209 (527)
.....+.
T Consensus 1536 ~~e~~l~ 1542 (2382)
T KOG0890|consen 1536 LLESYLS 1542 (2382)
T ss_pred hhhhhhh
Confidence 7666655
No 350
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.76 E-value=1.8 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34445555555555555555555443
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.70 E-value=23 Score=31.80 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 154 TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
.+.-+..+.|+..+|.++|+.+.+...+-.-......|+.++....-+.....++.+.-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445566777777777777765522211122344566666666656555555554443
No 352
>PRK10941 hypothetical protein; Provisional
Probab=86.47 E-value=8.3 Score=34.16 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 158 (527)
....+-.++.+.++++.|..+.+.+....|. ++.-+..-.-.|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE--DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666778889999999999988887554 55556666777888899999988888887653 12334444444444
Q ss_pred H
Q 043284 159 L 159 (527)
Q Consensus 159 ~ 159 (527)
+
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
No 353
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.94 E-value=1.4 Score=24.09 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
++..++..|...|++++|.+.|+++.+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666666666666665543
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.15 E-value=11 Score=30.74 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESA-----------ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
..-|++.....|....++..+..+|...+ .+++|...|++..+. .|+...|+.-+.... +|
T Consensus 55 isK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------ka 126 (186)
T PF06552_consen 55 ISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KA 126 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------TH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hh
Confidence 33333333334444555555555554432 144555555555544 677777776666542 35
Q ss_pred HHHHHHHHHCC
Q 043284 449 IRILEEMLDKG 459 (527)
Q Consensus 449 ~~~~~~~~~~~ 459 (527)
-++..++.+.+
T Consensus 127 p~lh~e~~~~~ 137 (186)
T PF06552_consen 127 PELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.78 E-value=39 Score=32.55 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHhhhCCCC
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA-RARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~ 110 (527)
++-.+..-+..+-+.+.+.+..++|..|++.+|. ++..|..-..... ...+++.|+.+|.+.++..|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 5556666666666677789999999999888874 5556655444333 334489999999988887554
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.70 E-value=1.6 Score=22.98 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFH 71 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 71 (527)
+..++..+...|+++.|...|+.+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4455666666666666666666665443
No 357
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.65 E-value=34 Score=31.87 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC-CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---------CCCCC
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF---------NVQRS 148 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 148 (527)
..+..+...|..+|+++.|.+.|.++..- -........|..++..-+-.|+|........+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46777888888889999988888885543 111224556777777777788887777666665543 13444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----CCC-ChhhHHHHHHHHHcCCChHHHHH-----HHHhcccCCCC
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK-----VVP-NVFTCNILIKALCKKDDVEGAIR-----VLDEMPSMGMV 217 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~A~~-----~~~~~~~~~~~ 217 (527)
...+..+.....+ .++.|.+.|-....... +.| |..+|.. +.+..-.++-+--+. .|+.+.+
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 5555555554444 66666665544332211 223 3444443 334433333222222 2333333
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHhHHHHHH
Q 043284 218 PNLVTHTTILGGYVWRGDIENAKRVFGDILDR-----GWVPDATTYTVLMD 263 (527)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 263 (527)
..+..+..+..-| .+++..++++++++... -+.|.+.+.-.+|+
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2344444454444 45788888888877654 23455555555544
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.63 E-value=28 Score=30.84 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
+++.....|...|.+.+|.++.++..... +.+...+-.++..+...||--.+.+.++++. +.|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34566677788888888888888877652 3456667777788888888777777777665 3466555444
No 359
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.54 E-value=2.5 Score=23.10 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444455555555555555554443
No 360
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.40 E-value=2.2 Score=40.09 Aligned_cols=115 Identities=9% Similarity=0.031 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
+....+..-+...+..+.++.|+.++.+++..+|+ ....|..-..++.+.+++..|+.=+..+.+..|. ....|.
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~ 76 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYV 76 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheee
Confidence 33445566777888899999999999999888774 3334555557788899999999888888886543 444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
.-..++.+.+.+.+|+..|+..... .|+.......+.-|-
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 5566777788888999999888875 566555555555443
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.25 E-value=13 Score=26.51 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
|..+-..+...+...|++++|.+.+-.+.+..+..-+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666666667777777777777776666653332233333444444443333
No 362
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.89 E-value=56 Score=33.67 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY---GLAGRPELAVKTFLRIEKFNVQRSVRSLN 153 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 153 (527)
+...+..|+..+.+.|++++....-..|.+..|. .+..|...+.-. ...+...++..+|++.+.. ..++..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHH
Confidence 4556777888888889888877777777765444 555666555443 3446777788888877754 23444454
Q ss_pred HHHHHHHh-------cCCHHHHHHHHHHhhhcCCCCCC--hhhHHHHH---HHHHcCCChHHHHHHHHhcccCCCCCCHH
Q 043284 154 TLLNALVQ-------NKRYDLVHLMFKNSRHKFKVVPN--VFTCNILI---KALCKKDDVEGAIRVLDEMPSMGMVPNLV 221 (527)
Q Consensus 154 ~l~~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 221 (527)
..+..+.. .++++....+|.+.....|..-+ ...|.... ..|..+-..++.+.+|..-...+ .|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 44444433 35567777777777655443322 22333322 23444444456666666555443 2322
Q ss_pred HHHHHHHHHHh-------cCChHHHHHHH-------HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 222 THTTILGGYVW-------RGDIENAKRVF-------GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 222 ~~~~l~~~~~~-------~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
+-+.-+.-..+ ..+++.+.+-+ ...... ..+-...|..+++.+.+.|+.-....+++++...
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 22111111111 12223333222 222221 1223345666777777778777777777666543
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=24 Score=30.25 Aligned_cols=92 Identities=13% Similarity=-0.012 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.-+.-|+...++..|+..+.+++...|. .+.-|..-+..+.+.++|+.+..--.+.++..|. .......+...+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N--~vk~h~flg~~~l 89 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN--LVKAHYFLGQWLL 89 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH--HHHHHHHHHHHHH
Confidence 3344455566777888877777766552 2345666677777777787777777777665332 2334445556666
Q ss_pred hcCChhHHHHHHHHHHh
Q 043284 126 LAGRPELAVKTFLRIEK 142 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~ 142 (527)
....+++|+..+.+..+
T Consensus 90 ~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hhccccHHHHHHHHHHH
Confidence 77777777777776643
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=29 Score=29.67 Aligned_cols=94 Identities=12% Similarity=0.251 Sum_probs=49.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 043284 365 TIIHWLCKE-GKIWEAKKLFDEFE---RGSIPSL---LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNM--- 434 (527)
Q Consensus 365 ~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--- 434 (527)
.+...|-.. .+++.|+..|+... .+...+. ..+.-+..--...+++.+|+++|++.....+..+..-|..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 56777777777762 1211111 2233333444566889999999999887655444333321
Q ss_pred HHH-HHHc--cCCHHHHHHHHHHHHHC
Q 043284 435 LIQ-GFCK--IGNAKEGIRILEEMLDK 458 (527)
Q Consensus 435 l~~-~~~~--~g~~~~A~~~~~~~~~~ 458 (527)
++. ++|. ..|.-.+...+++-.+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 221 1222 24555566666666653
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.37 E-value=1 Score=35.58 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--------SS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--------ccCHHHHHHHHHhcc
Confidence 345555566666666666666655544556666666677766666566665554211 122233444444555
Q ss_pred ChHHHHHHHHh
Q 043284 200 DVEGAIRVLDE 210 (527)
Q Consensus 200 ~~~~A~~~~~~ 210 (527)
.++++.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 55555544444
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.19 E-value=38 Score=29.88 Aligned_cols=89 Identities=6% Similarity=-0.093 Sum_probs=55.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc-
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK- 197 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 197 (527)
.-|.+++..|++.+++...-+.-+.--...+.+...-|-.|.+.+++..+.++-.......+ ..+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 44677888888888777665543321123345555666678888888887777776665422 1223346666655544
Q ss_pred ----CCChHHHHHHH
Q 043284 198 ----KDDVEGAIRVL 208 (527)
Q Consensus 198 ----~~~~~~A~~~~ 208 (527)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777776
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.26 E-value=10 Score=36.94 Aligned_cols=129 Identities=13% Similarity=-0.028 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 377 WEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
+.+..++..|.....|--.+.|...--.-..|+...|...+.........-.......|.....+.|-...|-.++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34445555554433333333333222223358888888888777643222223445667777778888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 457 DKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 457 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
... ...+.++..+++++....+.+.|++.|+.+.+..+.....-+.++.
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 654 3456678888899999999999999999999988877777666665
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.20 E-value=75 Score=32.64 Aligned_cols=318 Identities=10% Similarity=0.054 Sum_probs=160.1
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+....+.|++..+.++...+.. .|..+ -..|..+... .....+++....+++-.. .+.....-......+.+.++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d-~pL~~-yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKD-YPLYP-YLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccC-CCcHh-HHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccC
Confidence 3444577888888887777643 33311 1112222221 112245544444444332 23333344445556667778
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHH--HH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAK--RV 242 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~ 242 (527)
++.....+.. .+.+...-.....+....|+.++|......+-..|. ........++..+.+.|...... +-
T Consensus 115 w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 115 WRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred HHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8877763311 133555556677788888988888777777655552 35667777888887766654432 33
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHH--HccCCHHHHHH
Q 043284 243 FGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED---------NGVEPNEVTYGVMIEAF--CKGKKSGEARN 311 (527)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~--~~~~~~~~a~~ 311 (527)
+..+...| +...-..+..... .+.....+.+..+.. ..+.++...-..++.++ ....+.+.|..
T Consensus 188 ~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 188 IRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 33334443 3333333333221 111111111111111 01112221111111122 23456677888
Q ss_pred HHHHHHHcC-CCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 312 LLDDMLQRK-YVPSS--ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 312 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++....... ..+.. .+...+.......+...++...+....... .+......-+..-...++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 887765433 22111 122233322333322455666655543322 2344444555555678888888888888733
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
.......-.-=+.+++...|+.++|..+|+.+.
T Consensus 341 ~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 332233333345667667888888888888864
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.89 E-value=3.9 Score=27.87 Aligned_cols=47 Identities=4% Similarity=-0.120 Sum_probs=23.1
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcCh-hhHHHHHHHHHhcCChhHHHHH
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGE-NLFITVIRNYGLAGRPELAVKT 136 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 136 (527)
..++-++|+..|+.+++....+++. .++..++.+|...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555542222222 2334455555666665555544
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.70 E-value=4.7 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=7.9
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 043284 437 QGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~ 456 (527)
.+|...|+.+.|.+++++.+
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33333444444444443333
No 371
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.67 E-value=0.88 Score=35.95 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=16.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 043284 233 RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
.+.++....+++.+...+...+....+.++..|++.++.++..++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 333333334444443332222333344444444444333333333
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.37 E-value=4.1 Score=21.72 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 478 GNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
|+.+.|..+|+++....+.+...|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888887777777777776665
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.27 E-value=4.8 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 467 FSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+..++..+...|++++|...++.+.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444555555555555555555443
No 374
>PRK10941 hypothetical protein; Provisional
Probab=79.07 E-value=30 Score=30.76 Aligned_cols=74 Identities=14% Similarity=-0.043 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC-CCCCHHHHHHHHHH
Q 043284 154 TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG-MVPNLVTHTTILGG 229 (527)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~ 229 (527)
.+-.+|.+.++++.|+...+.+..- .+.+..-+.--.-.|.+.|.+..|..-++...+.. -.|+.......+..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4455666677777777777666654 22234445555566667777777766666554432 12344444444443
No 375
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.69 E-value=84 Score=32.31 Aligned_cols=316 Identities=10% Similarity=0.051 Sum_probs=165.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh--cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR--ARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
.-+....+.|++..+.++...+ +..| . ..|......... ...+++....+++.. +.+.....-...+..
T Consensus 38 ~~A~~a~~~g~~~~~~~~~~~l-~d~p---L--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 38 QQIKQAWDNRQMDVVEQLMPTL-KDYP---L--YPYLEYRQLTQDLMNQPAVQVTNFIRANP---TLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhc-cCCC---c--HhHHHHHHHHhccccCCHHHHHHHHHHCC---CCchHHHHHHHHHHH
Confidence 3455567889999998888877 2122 1 222222222222 224554444444432 223344444455666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=..... .....+.++..+.+.|....
T Consensus 109 La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 109 LARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHcCCCCH
Confidence 7777888877763211 2556666677888888899987776666655333222 34556667777665554332
Q ss_pred H--HHHHHhcccCCCCCCHHHHHHHHHHH-----------H-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--h
Q 043284 204 A--IRVLDEMPSMGMVPNLVTHTTILGGY-----------V-WRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYI--K 267 (527)
Q Consensus 204 A--~~~~~~~~~~~~~p~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 267 (527)
. .+=++.+...| +...-..+.... . -..+...+...+.. ++++...-..++.++. .
T Consensus 182 ~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 182 LAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH
Confidence 2 11122222222 111111111111 0 01112222221111 1223211121222222 3
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHH
Q 043284 268 LGRLTDAVKVMDEMEDNG-VEPN--EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDA 344 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (527)
..+.+.|...+....... ..+. ...+..+.......+..+++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456788999998875443 2222 1334444433344333566777666654332 2444455556666689999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 345 CELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
...+..|.... .-...-..-+.+++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988876543 22444445577787789999999999999843
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.68 E-value=5.5 Score=23.71 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=9.6
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043284 262 MDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~ 282 (527)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.43 E-value=6.1 Score=24.69 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=7.8
Q ss_pred HHHhcCCchHHHHHHHHhhh
Q 043284 87 KLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~ 106 (527)
++.+.|++++|++..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444443
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.12 E-value=20 Score=30.26 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (527)
.+.+.+...+++...+.-++.. +.+...-..+++.++-.|++++|..-++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3344444444444444444332 12333333444444444555444444433
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.79 E-value=6.5 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
..++-.+.+.|+++.|+...+.+++.+|+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45777889999999999999999998884
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.47 E-value=18 Score=27.38 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 344 ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
..+-++.+...++.|++.+...-++++-+-+++..|.++|+-++....+....|-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44445555555666666666666666666666666666666664433333333433
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.45 E-value=46 Score=31.50 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPSLL--TYNTLIAGM--CESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 423 (527)
..+.+.+++..|.++|+.+....+++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888443444333 344444444 3466777888888776654
No 382
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.38 E-value=3.1 Score=37.37 Aligned_cols=85 Identities=12% Similarity=-0.016 Sum_probs=39.3
Q ss_pred cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 91 ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170 (527)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (527)
.|.+++|++.|....+..| +...+|..-.+++.+.+++..|+.=+....+.+ +.+..-|-.-..+....|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHH
Confidence 3445555555555554322 133344444455555555555555555554432 1112223333333334455555555
Q ss_pred HHHHhhhc
Q 043284 171 MFKNSRHK 178 (527)
Q Consensus 171 ~~~~~~~~ 178 (527)
.|....+.
T Consensus 204 dl~~a~kl 211 (377)
T KOG1308|consen 204 DLALACKL 211 (377)
T ss_pred HHHHHHhc
Confidence 55555443
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.31 E-value=25 Score=25.44 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=6.5
Q ss_pred HHccCCHHHHHHHHH
Q 043284 439 FCKIGNAKEGIRILE 453 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~ 453 (527)
+...|+|++|..+.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 49 LMNRGDYQSALQLGN 63 (115)
T ss_pred HHccchHHHHHHhcC
Confidence 334444444444433
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.01 E-value=54 Score=29.21 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE-----KGVEPNVFTY 432 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 432 (527)
+++.....|..+|.+.+|..+.++...-.+.+...+-.++..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4556778899999999999999999888888999999999999999998888887777653 3666655444
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.91 E-value=73 Score=30.70 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=28.1
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
..+.++...+++..+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 45677778888877777776555566776666777766543
No 386
>PRK09687 putative lyase; Provisional
Probab=76.76 E-value=57 Score=29.34 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh----hHHHHHHHHH
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRL----TDAVKVMDEM 281 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~ 281 (527)
|.......+.++...|.. .+...+..+... +|...-...+.++...|+. +++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 444444444444444432 222222333322 2444444444455555542 3344444444
No 387
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=41 Score=29.05 Aligned_cols=61 Identities=7% Similarity=-0.082 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
.+.+...++...|++-++++--..++... +.++.+|..-..+.+..-+.++|..-|..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34444555555566666666665555543 44555555555555555566666655555544
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.44 E-value=46 Score=28.44 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHHHccCCH-------HHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 431 TYNMLIQGFCKIGNA-------KEGIRILEEMLDKGCFP----N-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
.+..+.+.|...|+. ..|.+.|.+..+..-.| + ......++....+.|+.++|.+.|.++......
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 445556666666663 34556666665432221 1 234445777788899999999999998877653
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.92 E-value=34 Score=29.56 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
|........+-.+...+++++|...+ .+|...++-... ++..+...|+...|..+++.. .|...+.....
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~ 145 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAV---GPPLSSPEALT 145 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV----QNKRYDLVHLM 171 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~ 171 (527)
.++.. ...|.+.+|...-+...+ ......+..++..+. +.+..++...+
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 390
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.10 E-value=1.1e+02 Score=31.76 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhcCCCCCChhhHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL---VQNKRYDLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
+-..+..|+..+.+.|++++....-..|...- +.++..|..-+... ...+...++..+|++....+. ++..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~---~v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN---SVPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc---cchHHH
Confidence 44566788889999999999888888887764 56667666555433 234677888888888876543 344444
Q ss_pred HHHHHHH-------cCCChHHHHHHHHhcccC-CCCCC--HHHHHH---HHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 190 ILIKALC-------KKDDVEGAIRVLDEMPSM-GMVPN--LVTHTT---ILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 190 ~l~~~~~-------~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
-.+.... +.++++....+|.+.+.. |...+ ...|.. +=..|..+-..+....++..-+..+
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 4444333 345677777788776543 22111 112222 2223334444455566665555543
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.52 E-value=62 Score=28.71 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 148 SVRSLNTLLNALVQNKRYDLVHLMF 172 (527)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~a~~~~ 172 (527)
++.....+...|.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455556666666666666666544
No 392
>PRK09687 putative lyase; Provisional
Probab=73.63 E-value=69 Score=28.82 Aligned_cols=216 Identities=14% Similarity=0.021 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHhhhcCCCCCChhhHH
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY----DLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
..+....+..+...|. .++...+..+.. .++...-...+.++.+.|.. +++...+..+... .++...-.
T Consensus 37 ~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~ 109 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRA 109 (280)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHH
Confidence 3344444455544443 233333333332 34444555555555555542 3455555444222 23444333
Q ss_pred HHHHHHHcCCC-----hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043284 190 ILIKALCKKDD-----VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDG 264 (527)
Q Consensus 190 ~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (527)
..+.++...+. ...+...+...... ++..+-...+.++.+.++ +.+...+-.+++. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 44444433321 11223333333222 244444444555555544 3344444444432 233333333344
Q ss_pred HHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhH
Q 043284 265 YIKLG-RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVED 343 (527)
Q Consensus 265 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (527)
+.+.+ +.+.+...+..+.. .++...-...+.++.+.++. .++..+-...+.+. .....+.++...|+. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-h
Confidence 44332 13344444444443 23444455555555555553 34443333333221 122344555555553 3
Q ss_pred HHHHHHHHHh
Q 043284 344 ACELWKRLLR 353 (527)
Q Consensus 344 a~~~~~~~~~ 353 (527)
|...+..+.+
T Consensus 253 a~p~L~~l~~ 262 (280)
T PRK09687 253 LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.53 E-value=12 Score=25.57 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNK--TSFSLLIEGLYESGNEGEVGKV 486 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 486 (527)
...+.++|+..|+..++.-..|.. .++..++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666654322221 2455566666666666666554
No 394
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.44 E-value=32 Score=24.89 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
..++|..+-+-+.........+--+-+..+...|+|++|..+.+.+ ..||...|..|. -.+.|-.+++..-+.+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 4677877777775433223333344456788899999999888766 378888876653 4677888888888888
Q ss_pred HHHCCCCCCHHHHH
Q 043284 455 MLDKGCFPNKTSFS 468 (527)
Q Consensus 455 ~~~~~~~p~~~~~~ 468 (527)
+...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 87765 44544443
No 395
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.30 E-value=15 Score=28.21 Aligned_cols=24 Identities=0% Similarity=-0.243 Sum_probs=12.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..++.+.+++++++++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344445555555555555555544
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.97 E-value=41 Score=25.99 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 427 PNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPN--KTSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 427 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
++..+-..+.+++.++.+ ..+.+.++++..+. -.|+ ......|.-++++.+++++++++++...+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 334444444444444433 23344455555431 1121 1223334445555555555555555554444
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.16 E-value=34 Score=26.23 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 447 EGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMA 490 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (527)
.+.++|+.|...|+--. ...|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66677777776655433 344666666677777777777777653
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.27 E-value=1.6e+02 Score=32.04 Aligned_cols=128 Identities=9% Similarity=0.021 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCC-hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 043284 150 RSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV-VPN-VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL 227 (527)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 227 (527)
+-|..+++.+-+.+-.+.+.++-...++..+. .|. ..+++.+.+.....|.+.+|...+-.-... ..-..+...++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 44677888888889888888877776665221 111 345777888888888888888776543321 11123455666
Q ss_pred HHHHhcCChH------------HHHH-HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 228 GGYVWRGDIE------------NAKR-VFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 228 ~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
......|.++ +... +++..-+...-.....|+.|-..+...+++.+|-.++-
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 6666666643 3344 33322222222233456666666778888888776543
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.81 E-value=17 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=24.8
Q ss_pred HhcCChhHHHHHHHHhcccCCCC-CCC-----HHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNF-SHN-----YDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
.+.|++..|.+.+.+........ ... ..+...+.......|++++|...++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777755544443111100 011 12233344444455555555555555544
No 400
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.53 E-value=38 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=29.6
Q ss_pred chHHHHHHHHhhhCCCC---CcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 94 FDAVESLLTELKQNPEI---KCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 94 ~~~A~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+..|.+.|+++.+.... ..+ ..+...+.....+.|++++|.+.|.++...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44666666666654222 112 2333445566667777777777777777654
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.47 E-value=37 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.042 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043284 470 LIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
++......|++++|...++++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455666666665555544
No 402
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=70.25 E-value=81 Score=28.79 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHHHcCCHHHHHHHHHHH----hcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHH
Q 043284 368 HWLCKEGKIWEAKKLFDEF----ERGSIPSLLTYN--TLIAGMCESAELTEAGRLWDDMVE-----KGVEPNVF 430 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~ 430 (527)
...-+.++.++|.+.++++ .....|+...|. ..++.+...|+..++.++++...+ .+++|+..
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344455667777766666 223334444443 344455556677777766666555 35555443
No 403
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.21 E-value=72 Score=27.58 Aligned_cols=85 Identities=12% Similarity=-0.048 Sum_probs=48.3
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCMPDN-AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEA 413 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 413 (527)
|.....++.|+..|.+.+..+ |.. ..|..-+..+.+..+++.+..--.+...-.+..+...-.+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 444455666776666666543 333 33344455566666666666555555444443444444555566666677777
Q ss_pred HHHHHHHH
Q 043284 414 GRLWDDMV 421 (527)
Q Consensus 414 ~~~~~~~~ 421 (527)
+..+++..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77776664
No 404
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.44 E-value=33 Score=31.11 Aligned_cols=94 Identities=9% Similarity=0.028 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhC--CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQN--PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
..-+.-|.+..+|..|...|.+-++. ..-..+...|..-..+-...|++..|+.=....+... +.....|..-..++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCL 163 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHH
Confidence 33344556666666666666655544 1112244455555555555666666666666665553 33344555555556
Q ss_pred HhcCCHHHHHHHHHHhh
Q 043284 160 VQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~ 176 (527)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666666666655554
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.33 E-value=18 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=10.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
.++.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455555555555444443
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.28 E-value=52 Score=25.23 Aligned_cols=43 Identities=5% Similarity=-0.006 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 132 LAVKTFLRIEKFNVQRS-VRSLNTLLNALVQNKRYDLVHLMFKN 174 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (527)
.+.++|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665443 45566667777777777777777754
No 407
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.36 E-value=1.2e+02 Score=28.59 Aligned_cols=118 Identities=10% Similarity=0.167 Sum_probs=73.1
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------C------------------
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN------P------------------ 108 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~------------------ 108 (527)
..++++.-..++. ..| --..++..+...+..+|+.+.|.+++++++-. +
T Consensus 22 ~~~Dp~~l~~ll~----~~P---yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~ 94 (360)
T PF04910_consen 22 QSHDPNALINLLQ----KNP---YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY 94 (360)
T ss_pred HccCHHHHHHHHH----HCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC
Confidence 3445555555442 233 23457777778888888888777777766311 0
Q ss_pred CCCcChhhHHHH---HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhh
Q 043284 109 EIKCGENLFITV---IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV-QNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 109 ~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 177 (527)
...-|...|..+ +..+.+.|.+..|+++.+-+...+...|+.....+|+.|+ +.++++-.+++.+....
T Consensus 95 ~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 95 RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 011134444433 4556777888888888888888775547766666676654 56677777777776543
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.90 E-value=1.9e+02 Score=30.81 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHhhhcCCCCCChhhH--
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFN---VQRSVRSLNTLLNALVQNKRY--DLVHLMFKNSRHKFKVVPNVFTC-- 188 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 188 (527)
-|..|+..|...|+.++|+++|.+..+.. -..-...+..+++.+.+.+.. +-+.+.-+....... ......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p-~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP-EAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc-hhheeeeec
Confidence 37788999999999999999999988732 111123444566666666654 555555555443310 0000011
Q ss_pred ----------HHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 043284 189 ----------NILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 189 ----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (527)
...+-.|+.....+-++.+++.+....-.++..-.+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 11334577788889999999998877656677777778777764
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.40 E-value=1e+02 Score=27.43 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
++.....+...|.+.|++.+|...|-.-.. ++...+..++..+...|...++ +... ...+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHH
Confidence 566777888888888888888877754321 2333332233333333332222 1111 11223
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 043284 264 GYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455567788887777666543
No 410
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.36 E-value=90 Score=26.91 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=40.9
Q ss_pred HHcCCChHHHHHHHHhcccC------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043284 195 LCKKDDVEGAIRVLDEMPSM------------GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLM 262 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (527)
+...|+..+|+.-++.-... --.|.+.....++..|. .+++++|.+++.++-+.|+.|.. ..+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 34556666666555443211 11366667777776654 56788888888888888877543 333344
Q ss_pred HH
Q 043284 263 DG 264 (527)
Q Consensus 263 ~~ 264 (527)
+.
T Consensus 280 Rv 281 (333)
T KOG0991|consen 280 RV 281 (333)
T ss_pred HH
Confidence 43
No 411
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.17 E-value=82 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKF--NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNS 175 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (527)
...+..|++...-.|+.....+.++.+.+. |..|...+-..+.-+|.-.|++.+|.+.|-..
T Consensus 235 yfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 235 YFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555432 21222111123444455555555555555443
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.96 E-value=41 Score=27.55 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=24.6
Q ss_pred chHHHHHHHHhhhCCCCC--cCh----hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 94 FDAVESLLTELKQNPEIK--CGE----NLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
++.|+.+|+.+.+..+.+ ... .+-...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 346677776666542211 000 0112334456666666666666666654
No 413
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.54 E-value=81 Score=29.75 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcccC----CCCCCCHHHHHHHHHHHHh-------cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 57 LDLALQIFHYAGKFH----PNFSHNYDTYHSIIHKLAR-------ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 57 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
..+..+.|+..+... .+..|........+..+.. .+.+-+|.-+++......|. +...-..+++.|.
T Consensus 151 ~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~--n~~~~LlLvrlY~ 228 (365)
T PF09797_consen 151 AQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPH--NYQLKLLLVRLYS 228 (365)
T ss_pred HHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
..|-...|.+.|..+.-..++.|.-.| .+..-+...|....+. .+++....- ...+.......+....+.|.+.+.
T Consensus 229 ~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~~r~~~~~~~~~~~~~~~~~~~~f--y~~~~~~~~e~i~~af~~gsysKi 305 (365)
T PF09797_consen 229 LLGAGSLALEHYESLDIKNIQLDTLGH-LILDRLSTLGPFKSAPENLLENALKF--YDNSEKETPEFIIKAFENGSYSKI 305 (365)
T ss_pred HcCCHHHHHHHHHhcChHHHHHHHhHH-HHHHHHhccCcccccchHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCchhH
Q ss_pred HHHHH
Q 043284 205 IRVLD 209 (527)
Q Consensus 205 ~~~~~ 209 (527)
.++.+
T Consensus 306 ~ef~~ 310 (365)
T PF09797_consen 306 EEFIE 310 (365)
T ss_pred HHHHH
No 414
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.36 E-value=2.1e+02 Score=30.89 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH----hcC---CchHHHHHHHHhhhCCCCCcCh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA----RAR---AFDAVESLLTELKQNPEIKCGE 114 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~---~~~~A~~~~~~~~~~~~~~~~~ 114 (527)
+++-.+-+++...+.+++|+..++++...-||....-++...++-.+. ..| .+++|+.-|+.+....+ -+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 552 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG---AP 552 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC---Cc
Confidence 455666777888999999999999997777776655555444333222 223 57888889988877433 23
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 115 NLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
--|..-+-.|-+.|++++-++.+....++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34666666788889999988888777665
No 415
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.16 E-value=2.2e+02 Score=31.05 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK----TSF 467 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 467 (527)
-|..+++.+-+.+-.+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|.+.+-. .||. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 3667788888888899999888888775 3333 34567777777888888877765432 2554 346
Q ss_pred HHHHHHHHhcCChh------------HHHH-HHHHHHhCCCCChhhHHHHHHHHH---hchhhhHHH
Q 043284 468 SLLIEGLYESGNEG------------EVGK-VVSMATASGSVESDSWNFLLTRIV---SDLDSGAGA 518 (527)
Q Consensus 468 ~~l~~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~a~~~ 518 (527)
..++-.+..+|+++ +... +++.+.+..+.....+..++.+.+ +|+.+|..+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66777777776644 4555 666666666655555555665554 666666543
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.98 E-value=47 Score=27.81 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 460 CFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
..|+..++..++.++...|+.++|.++.+++...-+
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 357777777777777777888888777777766654
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.85 E-value=2.2e+02 Score=30.93 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCC--CCCHHHHHHHHHHHHhc
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNF--SHNYDTYHSIIHKLARA 91 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 91 (527)
..++.+...++|.+|..+.++- +.+-++ -.++..+..-+..+.++
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~Rkh-RIdlNll~Dh~p~~Fl~ni~~Fv~q 745 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKH-RIDLNLLYDHNPEQFLENIELFVEQ 745 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHh-ccccceEEECCHHHHHHHHHHHHHh
Confidence 4455667789999999988755 233222 24566666656655544
No 418
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.77 E-value=1.1e+02 Score=27.51 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 043284 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESG-------- 478 (527)
Q Consensus 411 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 478 (527)
..|...+.++...+ +......+...|.. ..+..+|..+|.+..+.|- ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 46777777776664 33333344444422 3467888888888888763 33333333 455444
Q ss_pred -------ChhHHHHHHHHHHhCCCC
Q 043284 479 -------NEGEVGKVVSMATASGSV 496 (527)
Q Consensus 479 -------~~~~A~~~~~~~~~~~~~ 496 (527)
+...|...+......+.+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 667777777777666653
No 419
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.89 E-value=1.9e+02 Score=29.77 Aligned_cols=386 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSL-NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
....+...+.+.+..-.|+...- ..+-..|.-.|++++|++.--.....+.+.++...+.+++.-|...= .+.+.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~y-i~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMY-IETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHH-HHHHHHHh
Q ss_pred Hhcc-cCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CCCHHhHHHHHHHHHhcCC-hhHHHHH
Q 043284 209 DEMP-SMGMVPNLV-THTTILGGYVWRGDIENAKRVFGDILDRGW--------VPDATTYTVLMDGYIKLGR-LTDAVKV 277 (527)
Q Consensus 209 ~~~~-~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~-~~~a~~~ 277 (527)
+.-. ..++.+-.. ....++..|...+++..|+-+.-+....++ ..+....+.++..+..... -+--.++
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~v 197 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKV 197 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 043284 278 MDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357 (527)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (527)
+..+.+.-.+....-|..+..+|.-..+.+.+.++++++.+. +..+...-+.......-.++-+....+....+-.
T Consensus 198 lr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e----~~~llayQIAFDL~esasQefL~~v~~~l~~d~~ 273 (929)
T KOG2062|consen 198 LRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE----DDLLLAYQIAFDLYESASQEFLDSVLDRLPADDA 273 (929)
T ss_pred HHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc----chhhhHHHHHHHHhhccCHHHHHHHHHHcccccc
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFT----- 431 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----- 431 (527)
.+......++..+.- +...+++..+ ......|....+..-... +..-...|.-+-..+...|...|...
T Consensus 274 ~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~ 348 (929)
T KOG2062|consen 274 RDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRNNLD 348 (929)
T ss_pred cccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHhchh
Q ss_pred ----------HHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 432 ----------YNMLIQ-GFCKIGNAKEGIRILEEMLDKGCFPNKTS---FSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 432 ----------~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
|+.... +..+.|+...|.+++.--+-..-.|...- =..++.++.++|......+++....+....+
T Consensus 349 WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e 428 (929)
T KOG2062|consen 349 WLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENE 428 (929)
T ss_pred HHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccch
Q ss_pred hhhHHHHHH-HHHhchhhhHHHHHHHHhh
Q 043284 498 SDSWNFLLT-RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 498 ~~~~~~ll~-~~~~~~~~a~~~~~~~l~~ 525 (527)
...+...+. .+.|--..-++.|+++-+.
T Consensus 429 ~v~hG~cLGlGLa~mGSa~~eiYe~lKev 457 (929)
T KOG2062|consen 429 VVRHGACLGLGLAGMGSANEEIYEKLKEV 457 (929)
T ss_pred hhhhhhhhhccchhcccccHHHHHHHHHH
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.88 E-value=1.4e+02 Score=28.15 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=81.7
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHH------HcCCHHHHHHHHHHHhcCCCCCHHH
Q 043284 324 SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI-IHWLC------KEGKIWEAKKLFDEFERGSIPSLLT 396 (527)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (527)
-..++..+...+...|+.+.|.+++++++-. +... ...+. ..|. .++......|...
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~f 102 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHPSFSPFRSNLTSGN--------CRLDYRRPENRQF 102 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHHHhhhhhcccccCc--------cccCCccccchHH
Confidence 4556666777777777777777777665421 0000 00000 0000 0011111224444
Q ss_pred HHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHC------CCCCCHHH
Q 043284 397 YNT---LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF-CKIGNAKEGIRILEEMLDK------GCFPNKTS 466 (527)
Q Consensus 397 ~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~------~~~p~~~~ 466 (527)
|.+ .+..+.+.|.+..|+++.+-+......-|+.....+|+.| .+.++++--+++.+..... ..-|+. .
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a 181 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-A 181 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-H
Confidence 443 3456677888888888888888664333555555566655 5677777777777765541 012332 2
Q ss_pred HHHHHHHHHhcCCh---------------hHHHHHHHHHHhCC
Q 043284 467 FSLLIEGLYESGNE---------------GEVGKVVSMATASG 494 (527)
Q Consensus 467 ~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~ 494 (527)
|. ..-++...++. ++|.+.+.++....
T Consensus 182 ~S-~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 182 FS-IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HH-HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 22 33344455555 77777777765544
No 421
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=62.59 E-value=1.2e+02 Score=27.46 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
++....+.++..+....++.+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444445555555555555443 223334455666677777777777766554
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.34 E-value=60 Score=23.88 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
-....++|..+.+-+...+. -...+-.+-+..+...|+|++| +..-... ..||...|..| +-.+.|-.+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHH--HHHhhccHHHHHH
Confidence 34568899999998887643 2233333445567899999999 2222222 34777766554 5678999999999
Q ss_pred HHHHHHhCCCCChhhH
Q 043284 486 VVSMATASGSVESDSW 501 (527)
Q Consensus 486 ~~~~~~~~~~~~~~~~ 501 (527)
.+.++..++.|....+
T Consensus 91 ~l~rla~~g~~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSGSPELQAF 106 (116)
T ss_dssp HHHHHCT-SSHHHHHH
T ss_pred HHHHHHhCCCHHHHHH
Confidence 9998777665544333
No 423
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.32 E-value=1.7e+02 Score=29.06 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=95.4
Q ss_pred cCChhHHHHHHHHhcccCCCC---------CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------CC---------
Q 043284 54 QQNLDLALQIFHYAGKFHPNF---------SHNYDTYHSIIHKLARARAFDAVESLLTELKQN------PE--------- 109 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~--------- 109 (527)
...+++|...|..+++..+.. +--..+...+..++..+|+.+-|..++++.+-. +.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456778888887776443311 112346677778888889988777777655421 00
Q ss_pred ----CCcChhhHHHH---HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhhcC--
Q 043284 110 ----IKCGENLFITV---IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV-QNKRYDLVHLMFKNSRHKF-- 179 (527)
Q Consensus 110 ----~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-- 179 (527)
.+-+...|..+ +..+.+.|.+..|+++..-+.+.....|+.....+|+.|+ +..+++-.+++++......
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11133444433 3445677888999988888888775557777777887765 4567787777777764332
Q ss_pred CCCCChhhHHHHHHHHHcCCC---hHHHHHHHHhccc
Q 043284 180 KVVPNVFTCNILIKALCKKDD---VEGAIRVLDEMPS 213 (527)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~ 213 (527)
..-||-..-.++...|..... -..|...+.+...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 223443333345555554443 3344444444443
No 424
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.30 E-value=49 Score=32.56 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=49.1
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
+|+..+|...+..++-..+.... ......++..+-+.|...+|--++..+....+.- ..-+..+..+++..|.+...
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~--t~n~y~l~~i~aml~~~N~S 302 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRHNK-DIALLSLATVLHRAGFSADAAVILHAALDDADFF--TSNYYTLGNIYAMLGEYNHS 302 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcccc-cchhhhHHHHHHHcccccchhheeehhccCCccc--cccceeHHHHHHHHhhhhhh
Confidence 56777777766666433333221 2245566666667777777766666555532221 11244556666666666666
Q ss_pred HHHHHHHHhcC
Q 043284 134 VKTFLRIEKFN 144 (527)
Q Consensus 134 ~~~~~~~~~~~ 144 (527)
+.-|+...+.+
T Consensus 303 ~~~ydha~k~~ 313 (886)
T KOG4507|consen 303 VLCYDHALQAR 313 (886)
T ss_pred hhhhhhhhccC
Confidence 66666665554
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.34 E-value=21 Score=33.95 Aligned_cols=105 Identities=10% Similarity=-0.092 Sum_probs=59.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
+......++++.|..++.++++.+.. ....+..-..++.+.+++..|..=+..+.+..+.....|..-..++...+++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34445556677777777777665321 22333333356666677776666666664444444555555555666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGF 439 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 439 (527)
+|+..|+..... .|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 666666666533 56655555554444
No 426
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.06 E-value=1.7e+02 Score=28.18 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHcCCChHHHHHHHHhcccCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC
Q 043284 195 LCKKDDVEGAIRVLDEMPSMGMVPNLVT--HTTILGGYVWRGDIENAKRVFGDILDRGWVPDAT--TYTVLMDGYIKLGR 270 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 270 (527)
.+..|+.+-+..++ +.|..|+... ....+...+..|+.+ +.+.+++.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34456655544444 3455554432 233444455566654 334444555444322 11223444455666
Q ss_pred hhHHHHHH
Q 043284 271 LTDAVKVM 278 (527)
Q Consensus 271 ~~~a~~~~ 278 (527)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544444
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.56 E-value=1.5e+02 Score=28.06 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCH--HHHHHHHHHHH--hcCCchHHHHHHHHhhhC
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNY--DTYHSIIHKLA--RARAFDAVESLLTELKQN 107 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 107 (527)
..+..+.+.+++..|.++|+.+.+. .+++. ..+..+..+|. ..-++.+|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455667889999999999998653 22333 35555555555 456777888888887763
No 428
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.13 E-value=65 Score=23.23 Aligned_cols=48 Identities=15% Similarity=-0.060 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 448 GIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
-.+.+++....+....+.....|...|.+.|+.+.|.+-|+.-....|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCc
Confidence 344555555544443344455667778888888888888877554443
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.73 E-value=1.3e+02 Score=26.72 Aligned_cols=126 Identities=24% Similarity=0.273 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH-------HHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHH
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT-------VLMDGYIKLGRLTDAVKVMDEME----DNGVEPNEVTYG 294 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 294 (527)
+.+-..+.+++++|+..+.+++..|+..+..+.+ .+...|...|++....+...... .-.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455667788888888888888888776665543 45566777777666555543322 211111223334
Q ss_pred HHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHH-----hHHHHHHHHHhcCCHhHHHHHHHHH
Q 043284 295 VMIEAFCK-GKKSGEARNLLDDMLQRKYVPSSA-----LCCKVIDLLCEEGKVEDACELWKRL 351 (527)
Q Consensus 295 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (527)
.++..+.. ...++..+.+.....+-..+-... .-..++..+.+.|.+..|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44444332 233455555555444422111111 1123455566666666666555433
No 430
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.58 E-value=62 Score=22.79 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.|+.+.|.+++..+. + .+..|..++.++-..|+
T Consensus 49 ~g~~~~ar~LL~~L~-r-----g~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-Q-----KEGWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-c-----CCcHHHHHHHHHHHcCc
Confidence 355555555555554 3 22334444444444444
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.01 E-value=2.3e+02 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCC-CCCHHHHHHHHHhcCChhHHHHHHHH
Q 043284 37 PWPQ-RLYPKRLVSMIFRQQNLDLALQIFHY 66 (527)
Q Consensus 37 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 66 (527)
++.+ |.+++ .+..+.-+|.++.|.+++..
T Consensus 144 p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 144 PYEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SCSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CCccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 3444 67776 66677778888888888843
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.23 E-value=58 Score=28.62 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKF----N-VQRSVRSLNTLLNALVQNKRYDLVHLMFK 173 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (527)
...+-..++..|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+--
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344445666666666666666666665321 1 12334445555666666666666555433
No 433
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=93 Score=28.39 Aligned_cols=89 Identities=13% Similarity=-0.039 Sum_probs=48.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNV---QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALC 196 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 196 (527)
..-|.+..++..|...|.+-++... ..+...|+.-..+-.-.|++..++.=-...... .|+ ...|---..++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---KPTHLKAYIRGAKCLL 164 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhhhhhhhHHHH
Confidence 3445667777777777776665432 123445555555555566666666555444432 332 333333344555
Q ss_pred cCCChHHHHHHHHhcc
Q 043284 197 KKDDVEGAIRVLDEMP 212 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~ 212 (527)
...+++.|....++..
T Consensus 165 eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5566666666655543
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.52 E-value=76 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666554
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.39 E-value=33 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 043284 155 LLNALVQNKRYDLVHLMFKNS 175 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~ 175 (527)
++.++...|++++|.+.++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 436
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.32 E-value=1.7e+02 Score=26.96 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPNV----FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLY 475 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 475 (527)
-.++++.++..++.. -|+. ..|..++......|.++..+.+|++++..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345777777777765 4564 3467777778888888899999999998888887776666666655
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=2.3e+02 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRL 351 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~ 351 (527)
...+..++..+|+.+.+..++++.
T Consensus 287 LLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 287 LLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHH
Confidence 344445555566666665555543
No 438
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=1.5e+02 Score=25.89 Aligned_cols=62 Identities=16% Similarity=-0.011 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.+.....++...|++-++++--.++... .+.|+..|.--..+.+..=+.++|..-|...++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3445556677778888888887777765 4557778888888888777888888888888876
No 439
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.41 E-value=2.7e+02 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC
Q 043284 220 LVTHTTILGGYVWRG--DIENAKRVFGDILDR 249 (527)
Q Consensus 220 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 249 (527)
..-...++.+|.+.+ +++.|+.....+.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344556777777777 778888888777765
No 440
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.16 E-value=20 Score=32.55 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=63.5
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHH
Q 043284 372 KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF-TYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 450 (527)
..|.++.|++.|.......++....|..-..++.+.+++..|++=+....+. .||.. -|-.--.+....|++.+|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 3456677777776666666666666666666777777777777666666543 34421 22222333444567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMA 490 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (527)
.+....+.++.+....+ +-...-+.+..++-...+++.
T Consensus 204 dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHH
Confidence 77777766554433322 223333344444444444443
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.13 E-value=1.8e+02 Score=26.64 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH-----hcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEF-----ERGSIPSLLTYNT-LIAGMCESAELTEAGRLWDDMVEKGVEPNVF----T 431 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~ 431 (527)
.+......|++.|+.+.|.+.+.+. .-+...|+..+.. +.-.|....-+.+-++..+.+.+.|-.-+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444555666666666666666554 2233344433332 2222333333344444444455555433321 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
|..+- |....++.+|-.+|-+.+
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 22221 233345666666655554
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.94 E-value=26 Score=29.85 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCC
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNP 108 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (527)
+....++.+.|.+++.+++..-| .....|..+...-.+.|+++.|.+.|++..+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap---~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAP---EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCc---hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44567777888888888765544 355577777777778888888888888777753
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.91 E-value=48 Score=29.66 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=33.3
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
++|+.++|..+|+-+++..| .++..+...+......++.-+|-++|-+++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP---~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAP---TNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hccchHHHHHHHHHHHhcCC---CCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 56777777777777766665 35556666666655666666666666666554
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.81 E-value=46 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 218 PNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
|+..+|..++..+...|+.++|.++..++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 445
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=3.2e+02 Score=29.27 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 220 LVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
..++..-...+...|++..+++++.++.+
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~klie 1259 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIE 1259 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555544443
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.34 E-value=1.6e+02 Score=25.67 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHHh
Q 043284 446 KEGIRILEEMLD---KGCFPNKTSFSLLIE-----GLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 446 ~~A~~~~~~~~~---~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 492 (527)
+.|.+.|+++.+ ..++|...++..|+- .|--.|+.++|.++.+.+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 556666666652 225676655444332 33457999999888777654
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.13 E-value=2.1e+02 Score=27.01 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=10.2
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~ 386 (527)
.+.+.+++..|.++|+.+
T Consensus 139 ~l~n~~dy~aA~~~~~~L 156 (380)
T TIGR02710 139 RAINAFDYLFAHARLETL 156 (380)
T ss_pred HHHHhcChHHHHHHHHHH
Confidence 344555666666666655
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.89 E-value=1.6e+02 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAF 300 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (527)
++..+-..|+++++...++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4455556666666666666666655555555444444444
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.83 E-value=2.2e+02 Score=27.01 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV--EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
..+..+...|...|+++.|++.|.+...--. .-.+..|..+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566777788888888888888877543210 11234444555555556777777776666554
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.80 E-value=57 Score=28.64 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhccc----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPS----MG-MVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566666666666666666532 11 2234455566666677777777666554444
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.75 E-value=1.2e+02 Score=23.99 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=31.4
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 043284 314 DDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG 374 (527)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (527)
..+.+.|.+++..- ..++..+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555544332 2345555555555666666666666655555555444444454444
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.49 E-value=1.1e+02 Score=23.37 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 131 ELAVKTFLRIEKFNVQRS-VRSLNTLLNALVQNKRYDLVHLMFK 173 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (527)
+...++|..|...|+-.. ...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666777766665443 2344555566666677777766664
No 453
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=49.14 E-value=45 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=17.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 043284 436 IQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
...+.+.|+.-+|+++.+++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3456778888889988888874
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.21 E-value=41 Score=30.15 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=15.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 043284 433 NMLIQGFCKIGNAKEGIRILEEMLDKGCF 461 (527)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 461 (527)
+..|....+.||+++|+.+++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44555555555555555555555555543
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.90 E-value=2.6e+02 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
..+.+.|+.++.+|.+.|..|....-..+..++-..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 366777777777777776666554444444444333
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.71 E-value=2.6e+02 Score=26.74 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDN--G-----VEPNEVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
..|++.++-.||+..|+++++.+.-. + ....+.++..+.-+|...+++.+|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666665555443211 0 11133455556666666666666666666553
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.45 E-value=1.5e+02 Score=29.97 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHH------HHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKN--CMPDNAISSTIIHWLCKEGKIW------EAKKLFDEFERGSIPSLLTYNTLI 401 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~l~ 401 (527)
.++++|...|++..+.++++.....+ -+.-...++..++...+.|.++ .|.+.++... ..-|..||..++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 68889999999999999998887653 2223455677777788888653 3444444442 334667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043284 402 AGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 402 ~~~~~~~~~~~a~~~~~~~~~ 422 (527)
++-...-+-.-..-++.+.+.
T Consensus 111 ~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 111 QASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HhhcChHhHHhccHHHHHHHH
Confidence 665543333334444444443
No 458
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.18 E-value=1.3e+02 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDNGVEPNE 290 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 290 (527)
++..+...++.-.|.++++++.+.+...+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 344444444445555555555544433333
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.06 E-value=49 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
.-|+..|..-.+.|++++|++++++..+.|+.--..+|..-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34668888888999999999999999988876555555443
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.95 E-value=2.2e+02 Score=25.77 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH----------hcCChHHH
Q 043284 170 LMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV----------WRGDIENA 239 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~~~~~~a 239 (527)
++++.+..+ ++.|.-.++.-+.-.+.+.=.+...+.+|+.+... ..-|..++..|+ -.|++...
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 455555533 56666666665555566666666666666666652 222444444443 23666666
Q ss_pred HHHHH
Q 043284 240 KRVFG 244 (527)
Q Consensus 240 ~~~~~ 244 (527)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 65543
No 461
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.61 E-value=1e+02 Score=21.86 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=18.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...-..+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455556666666666666666666666654
No 462
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.59 E-value=45 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 404 MCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 404 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
..+.++.+.+.+++.+..+. .+-....|-.+...-.+.|+++.|.+.|++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34566777777777777654 1223455666666666777777777777777763
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.22 E-value=2.5e+02 Score=26.81 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccC--C----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSM--G----M-VPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
...|++.++-.|++..|+++++.+.-. + + .-...++-.+.-+|...+++.+|.+.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554433211 0 1 11234555666667777777777777766653
No 464
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=46.09 E-value=1.2e+02 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.058 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
.+..+.+.|++-+|+++.+.++..+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~ 28 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE 28 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC
Confidence 356678999999999999999876654
No 465
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.04 E-value=2.6e+02 Score=26.32 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 68 GKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 68 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
.+...++.+-.......+..++ .++++.|++-+-...+. .....+..++..++..|...++|+.--+....+.+
T Consensus 3 ~k~e~dys~~~~e~~~~~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lsk- 80 (439)
T KOG1498|consen 3 QKMEVDYSEKVDELLPKANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSK- 80 (439)
T ss_pred cccccchHHHHHHhhHhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhcCCCCCChhhHHHHHHHHH-------------------------c
Q 043284 144 NVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNSRHKFKVVPNVFTCNILIKALC-------------------------K 197 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~ 197 (527)
+.|+...|. .+..+......-.||..+-..++..+- .
T Consensus 81 -----------------krgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~ 143 (439)
T KOG1498|consen 81 -----------------KRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEE 143 (439)
T ss_pred -----------------HhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHH
Q ss_pred CCChHHHHHHHHhcccCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHh------HH
Q 043284 198 KDDVEGAIRVLDEMPSMGMVPNLVTHTTI------------LGGYVWRGDIENAKRVFGDILDRGWVPDATT------YT 259 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~ 259 (527)
.|++++|.+++.+.. +.||.++ ++.|...+|+-.|.-+-..+...-+.-+... |+
T Consensus 144 ~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~ 216 (439)
T KOG1498|consen 144 QGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYE 216 (439)
T ss_pred cCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEMEDNGVEPN-----EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDL 334 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (527)
.+++.....+.+=.+-+.|+.....|.... ..........+.-.....+-.++........--.....+..++..
T Consensus 217 lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLkl 296 (439)
T KOG1498|consen 217 LMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKL 296 (439)
T ss_pred HHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHH
Q ss_pred HHhc
Q 043284 335 LCEE 338 (527)
Q Consensus 335 ~~~~ 338 (527)
+...
T Consensus 297 fv~~ 300 (439)
T KOG1498|consen 297 FVTM 300 (439)
T ss_pred HHhc
No 466
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.91 E-value=1e+02 Score=21.69 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043284 414 GRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEV 483 (527)
Q Consensus 414 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 483 (527)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| |+ .|...+.++...|..+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3445555555432 22222222222224456666666666655 33 33 244555555555554433
No 467
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.80 E-value=68 Score=19.48 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHh
Q 043284 234 GDIENAKRVFGDILDRGWVPDATT 257 (527)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~ 257 (527)
|-..++..+++.|.+.|+..+...
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l 39 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKL 39 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHH
Confidence 333333444444444443333333
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.42 E-value=1.4e+02 Score=22.93 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 043284 448 GIRILEEMLDKGCFPNKT-SFSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
..++|..|..+|+-.... .|...+..+...|++.+|.++++.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 556777777776654433 355666667777788877777753
No 469
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.81 E-value=1.9e+02 Score=26.34 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQR--SVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
.+.-+-.+.|+..+|.+.|+.+.+.- +. -..+...++.++....-+.+...++-+..+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~-pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEF-PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555567788888888888876532 11 123445677888777777666666655543
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.70 E-value=2.1e+02 Score=24.83 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=32.5
Q ss_pred HHHcCCHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043284 370 LCKEGKIWEAKKLFDEFER-------------GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 429 (527)
+...|+...|...++.-.. ...|.+.....++..|. .+++++|.+++.++.+.|..|..
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 3345666666555544311 23355555555555543 35667777777777766666543
No 471
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.23 E-value=1.5e+02 Score=22.56 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH----CC-CCCCH-HHHHHH----HHHHHhcCChhHHHHHHHHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLD----KG-CFPNK-TSFSLL----IEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~-~~~~~l----~~~~~~~g~~~~A~~~~~~~~ 491 (527)
.++..|..++...|++++++.--+..+. +| +.-|. ..|... ..++...|+.++|...|+++.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455666777788888776655555441 11 22232 223322 245667799999999988764
No 472
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.11 E-value=3.1e+02 Score=26.31 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh--HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHH
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT--CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYV 231 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~ 231 (527)
+...+..|+.+-+..+++. |..|+... ..+.+...+..|+.+-+.- +.+.|..|+.. .....+...+
T Consensus 6 L~~A~~~g~~~iv~~Ll~~-----g~~~n~~~~~g~tpL~~A~~~~~~~~v~~----Ll~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 6 LCDAILFGELDIARRLLDI-----GINPNFEIYDGISPIKLAMKFRDSEAIKL----LMKHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHhCCHHHHHHHHHC-----CCCCCccCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCccccCCCcccHHHHHH
Confidence 3345567888877776643 44554322 2344555567777654433 34445444432 1223455666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCH
Q 043284 232 WRGDIENAKRVFGDILDRGWVPDAT---TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVT--YGVMIEAFCKGKKS 306 (527)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 306 (527)
..|+.+.+..+++ .|...+.. .-...+...+..|+.+ +++.+.+.|..++... -...+...+..|+.
T Consensus 77 ~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 77 EEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 7888876655553 33221110 0112333444556653 4455555665554321 11233344456665
Q ss_pred HHHHHHH
Q 043284 307 GEARNLL 313 (527)
Q Consensus 307 ~~a~~~~ 313 (527)
+.+.-++
T Consensus 149 ~~v~~Ll 155 (413)
T PHA02875 149 KGIELLI 155 (413)
T ss_pred HHHHHHH
Confidence 5444333
No 473
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.04 E-value=25 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 043284 443 GNAKEGIRILEEMLDKGCFPN 463 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~ 463 (527)
|.-..|..+|++|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344445555555555555544
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.04 E-value=4.4e+02 Score=28.05 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=58.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH 169 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 169 (527)
..|+++.|++.-.++- +...|..|...-..+|+.+-|...|++.+... .+--.|.-.|+.++..
T Consensus 655 e~gnle~ale~akkld-------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe---------kLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD-------DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE---------KLSFLYLITGNLEKLS 718 (1202)
T ss_pred hcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh---------heeEEEEEeCCHHHHH
Confidence 3455555554444331 34456666666666666666666665554321 1222233445555555
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 170 LMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
++.+....+ .|..+ ......-.|+.++-.+++...-.. | -.|. .....|.-++|.++.++....
T Consensus 719 Km~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~---~--layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQL---P--LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcc---c--HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 544444322 11111 111111235555555555443221 1 1111 122456667777777776553
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=42.57 E-value=3.1e+02 Score=26.18 Aligned_cols=243 Identities=10% Similarity=0.050 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC
Q 043284 32 TPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111 (527)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 111 (527)
...++.|.++...+..+-....-|+++-...++..-. .+ ..+.... .-+.. .-.|+-+++.+.+..+... ..+
T Consensus 72 aa~~~vw~dprNv~Aa~iy~lSGGnP~vlr~L~~~d~--~~--~~d~~L~-~g~la-Y~~Gr~~~a~~~La~i~~~-~l~ 144 (421)
T PRK12798 72 AADPEVWDDPRNVDAALIYLLSGGNPATLRKLLARDK--LG--NFDQRLA-DGALA-YLSGRGREARKLLAGVAPE-YLP 144 (421)
T ss_pred hCCHHHhCCccchhHHHhhHhcCCCHHHHHHHHHcCC--CC--hhhHHHH-HHHHH-HHcCCHHHHHHHhhcCChh-hcC
Confidence 3455678888888888877888888888777766441 11 1122122 22222 2468888888888877653 233
Q ss_pred cChhhHHHHHHHH-HhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 112 CGENLFITVIRNY-GLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 112 ~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
+..-.+..|+.+- ....++.+|++.|++..-.- .-........-+......|+.+++..+-.+...++...|-..-|
T Consensus 145 ~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F 224 (421)
T PRK12798 145 AELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQF 224 (421)
T ss_pred chhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHH
Confidence 3444555555543 34567888999988876542 11112344445556678888888887777777765544433333
Q ss_pred HH-HHHHHHcCC---ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043284 189 NI-LIKALCKKD---DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDG 264 (527)
Q Consensus 189 ~~-l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (527)
.. +...+.+.+ ..+.-..++..|... --...|..+.+.-.-.|+.+.|.-.-++.+...-..+ .-...+..
T Consensus 225 ~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~--~~~~ra~L 299 (421)
T PRK12798 225 AQRFVDLVVRLDDEIRDARLVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASERALKLADPDS--ADAARARL 299 (421)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCC--cchHHHHH
Confidence 22 222333332 233444444444321 1245777777777788888877777766665431111 11112222
Q ss_pred HH-----hcCChhHHHHHHHHHHHCCC
Q 043284 265 YI-----KLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 265 ~~-----~~g~~~~a~~~~~~~~~~~~ 286 (527)
|. -..+++++.+.+..+....+
T Consensus 300 Y~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 300 YRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHHccCcccHHHHHHHHhcCChhhC
Confidence 21 23456666666666554433
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.91 E-value=1.3e+02 Score=31.60 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=87.2
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
....+|+++.|++.-..+ .+...|..|+......|+.+-|+..|++... |..|--.|.-.|+
T Consensus 652 LaLe~gnle~ale~akkl--------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn 713 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL--------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGN 713 (1202)
T ss_pred eehhcCCHHHHHHHHHhc--------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCC
Confidence 346789999998887766 4677999999999999999999999998865 3334445667889
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLD 209 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 209 (527)
.++-.++......+ .|.... .....-.|+.++-.++++..- ..| ..|. .....|.-++|.++.+
T Consensus 714 ~eKL~Km~~iae~r---~D~~~~---~qnalYl~dv~ervkIl~n~g----~~~--layl----ta~~~G~~~~ae~l~e 777 (1202)
T KOG0292|consen 714 LEKLSKMMKIAEIR---NDATGQ---FQNALYLGDVKERVKILENGG----QLP--LAYL----TAAAHGLEDQAEKLGE 777 (1202)
T ss_pred HHHHHHHHHHHHhh---hhhHHH---HHHHHHhccHHHHHHHHHhcC----ccc--HHHH----HHhhcCcHHHHHHHHH
Confidence 88888777766543 232221 122223577777777776543 222 2221 1234566777777777
Q ss_pred hcccC
Q 043284 210 EMPSM 214 (527)
Q Consensus 210 ~~~~~ 214 (527)
+..+.
T Consensus 778 e~~~~ 782 (1202)
T KOG0292|consen 778 ELEKQ 782 (1202)
T ss_pred hhccc
Confidence 76553
No 477
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.89 E-value=3.4e+02 Score=26.49 Aligned_cols=406 Identities=14% Similarity=0.101 Sum_probs=212.9
Q ss_pred HHHHHHHHHhcC--CchHHHHHHHHhhhCC-CCCcChhhHHHHHHH-HHhcCChhHHHHHHHHHHhcC-CCCC-----HH
Q 043284 81 YHSIIHKLARAR--AFDAVESLLTELKQNP-EIKCGENLFITVIRN-YGLAGRPELAVKTFLRIEKFN-VQRS-----VR 150 (527)
Q Consensus 81 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~ 150 (527)
...+.+.+...| +...++++++.+.... +......+...+... +.-..+++.|..-+++..... .-|+ -.
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 334455565666 6777778877776541 111122233333333 344678888888877664321 1122 24
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 043284 151 SLNTLLNALVQNK-RYDLVHLMFKNSRHKFKVVPN--VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL 227 (527)
Q Consensus 151 ~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 227 (527)
++..+...+.... .+..+..++.+..+...-.|- -....-|+....-..++..|.+++.---+.. .+-...|..++
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ 168 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHH
Confidence 5666777777766 788888888887765222221 1112335566777889999999865433321 12223333333
Q ss_pred HHH------HhcCC---hHHHHHHHHHHHHCCCCCCHHh------H--HHHHHHHHhcCChhHHHHHHHHHHHC---CC-
Q 043284 228 GGY------VWRGD---IENAKRVFGDILDRGWVPDATT------Y--TVLMDGYIKLGRLTDAVKVMDEMEDN---GV- 286 (527)
Q Consensus 228 ~~~------~~~~~---~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~~~~a~~~~~~~~~~---~~- 286 (527)
... ....+ ...+.....++.+. ..+|... | +.-+.-|...|+...+...++++.+. +.
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 222 22233 34444445555554 3444322 1 22233455678887777777766532 11
Q ss_pred -----------CCCHHHHHHHHH----HH---------HccCCHHHHHHHHHHHHHc----CCCC-CHHhH--------H
Q 043284 287 -----------EPNEVTYGVMIE----AF---------CKGKKSGEARNLLDDMLQR----KYVP-SSALC--------C 329 (527)
Q Consensus 287 -----------~~~~~~~~~l~~----~~---------~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~--------~ 329 (527)
.|....+.-+.+ ++ ...|-+++|.++-+++... .-.+ ....+ .
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 122222211111 11 1234455555554444321 1111 12222 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCH--------hhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHH--
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNC-MPDN--------AISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTY-- 397 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~-- 397 (527)
.++.+-.-.|++.+|++-+..|.+.-. .|.+ .....+...+...+.++.|+.-|... +.....|...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222222346999999998888876421 2221 11222334455678899999998887 33333344333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------HHHHH--HHccCCHHHHHHHHHHHHHCCCCCC----
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYN--------MLIQG--FCKIGNAKEGIRILEEMLDKGCFPN---- 463 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--------~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~---- 463 (527)
..++..|.+.|+.+.-.++++.+-. ++..++. .++.+ ....+++.+|..++.+-++..-..|
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHH
Confidence 3456778888887777777666532 2222211 11222 2467999999999998875321111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 464 -KTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 464 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
.-....|...+...|+..++.+.+.-+..
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 12234455556677888888777665433
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.08 E-value=1.9e+02 Score=26.16 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----------cCCHhHH
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE----------EGKVEDA 344 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 344 (527)
.++++.+.+.++.|.-.++.-+.-.+.+.=...+++.+++.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35666677777777777766666666666677777777777665 22234445544443 3777777
Q ss_pred HHHHHH
Q 043284 345 CELWKR 350 (527)
Q Consensus 345 ~~~~~~ 350 (527)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 479
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.96 E-value=93 Score=28.06 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT-VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLN 153 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 153 (527)
..|+..|...+....+.|.+.+.-.+|.++.+..|. +...|.. ..--+...++++.+..+|.+.+..+ +.++..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~--nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL--NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 345556666666666666666667777766665444 4444432 2233445667777777777776665 34444443
No 480
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=40.50 E-value=1.2e+02 Score=22.68 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhcCCCCC-ChhhHHHHH
Q 043284 166 DLVHLMFKNSRHKFKVVP-NVFTCNILI 192 (527)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 192 (527)
+++.+.+.++....|+.| |+..--++.
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~ 33 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFC 33 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 345566666666666666 444333333
No 481
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.58 E-value=2.9e+02 Score=24.89 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=9.5
Q ss_pred cCCChHHHHHHHHhccc
Q 043284 197 KKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~ 213 (527)
..+++..+...+.....
T Consensus 53 ~~~~~~~a~~~~~~a~~ 69 (292)
T COG0790 53 YPPDYAKALKSYEKAAE 69 (292)
T ss_pred ccccHHHHHHHHHHhhh
Confidence 34555566666655554
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.45 E-value=1.1e+02 Score=19.95 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=10.1
Q ss_pred HHhcCChhHHHHHHHHhcc
Q 043284 51 IFRQQNLDLALQIFHYAGK 69 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~ 69 (527)
+.+.|++=+|-++++.+-.
T Consensus 9 l~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCC
T ss_pred HHcCCCHHHhHHHHHHHHH
Confidence 4455666666666665543
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.63 E-value=5.8e+02 Score=28.50 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCChhHHHH------HHH-HhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CC-CC-
Q 043284 45 KRLVSMIFRQQNLDLALQ------IFH-YAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN----PE-IK- 111 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~- 111 (527)
.........+|.+.+|.+ +++ .+...+| .....|..+...+.+.++.++|+..-.+..-. .+ ..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~---~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHP---EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcch---hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344555556677776666 555 2222233 34556777777788888888887766544322 01 11
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 141 (527)
-+...|..+.......++...|+..+.+..
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 122234444444445555555555555443
No 484
>PHA00425 DNA packaging protein, small subunit
Probab=38.48 E-value=1.3e+02 Score=20.55 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
+.+.|..++..+......++..||++...+.+++ +.-..+.||..+..-+
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHk-----------F~isKl~pD~~iLg~l 63 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHK-----------FQISKLQPDENILGGL 63 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhc-----------ccccccCCcHHHHHHH
Confidence 4566777777776666667788888776665543 1112457777665433
No 485
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.10 E-value=1.3e+02 Score=20.60 Aligned_cols=26 Identities=12% Similarity=0.085 Sum_probs=11.6
Q ss_pred CChhhHHHHHHHHHhchhhhHHHHHH
Q 043284 496 VESDSWNFLLTRIVSDLDSGAGALDE 521 (527)
Q Consensus 496 ~~~~~~~~ll~~~~~~~~~a~~~~~~ 521 (527)
+|+..-..+-..+..=.++|+.+-+.
T Consensus 44 ~d~~~k~~~r~ki~eY~~RAE~Lk~~ 69 (77)
T cd02683 44 KDEAKKKNLRQKISEYMDRAEAIKKR 69 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455544433
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.58 E-value=1.2e+02 Score=19.99 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=28.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
....++.++..+++..-.+.++..+.+....| ..+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455666666666666667777777776666 3555566555555544
No 487
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.03 E-value=45 Score=25.68 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 473 GLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
.+...|.-.+|.++|.+|...|.| ++.|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~p-PddW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNP-PDDWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCC-CccHHHHHHHh
Confidence 345668899999999999999964 55799988743
No 488
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.68 E-value=2.1e+02 Score=22.60 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 043284 224 TTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+.++......+++.....+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 34444444444444444444443
No 489
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.38 E-value=1.4e+02 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.2
Q ss_pred cCChhHHHHHHHHHHh
Q 043284 477 SGNEGEVGKVVSMATA 492 (527)
Q Consensus 477 ~g~~~~A~~~~~~~~~ 492 (527)
.|++++|.++|..+.+
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3555555555555443
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.28 E-value=77 Score=17.38 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVE 422 (527)
Q Consensus 410 ~~~a~~~~~~~~~ 422 (527)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=35.77 E-value=3.6e+02 Score=24.99 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTE-AGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
...+...+++.++.+.+..+-+.+..- |.. ...++..++-...=.+. +..+.+.+... ||......++++...
T Consensus 169 LQGIAD~~aRl~~~~~~~~l~~al~~l--P~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~ 242 (340)
T PF12069_consen 169 LQGIADICARLDQEDNAQLLRKALPHL--PPE-VLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSS 242 (340)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhhC--ChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcC
Confidence 455677888888877766666666432 333 34445555444433333 33445555433 888888889998887
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLI-EGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
..........+...+......+..++..++ +++.-..+.+-...+++++-..+ +...++.+.+-+
T Consensus 243 ~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~--~~~lF~qlfaDL 308 (340)
T PF12069_consen 243 APASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQD--DQALFNQLFADL 308 (340)
T ss_pred CCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHccc--HHHHHHHHHHHH
Confidence 766666666577777665444555554443 44444567777778888765443 256677666643
No 492
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=35.19 E-value=1.7e+02 Score=21.59 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhcCCCCC-Chhh
Q 043284 166 DLVHLMFKNSRHKFKVVP-NVFT 187 (527)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~-~~~~ 187 (527)
++|.+.+.++....|+.| |+..
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~Nilc 27 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILC 27 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHH
Confidence 355566666666666666 4433
No 493
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.84 E-value=4.5e+02 Score=25.78 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=68.0
Q ss_pred HHHHHcCCHHHHHHHHHHH----hcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 043284 368 HWLCKEGKIWEAKKLFDEF----ERGSIP-----SLLTYNTLIAGMCESAELTEAGRLWDDMVE-------KGVEPNV-- 429 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~----~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~p~~-- 429 (527)
+.+.-.|++.+|.+++... ..+... .-..||.+.....+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4455678888888887765 112111 223356676666777777777777766653 3544432
Q ss_pred ---------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043284 430 ---------FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE 476 (527)
Q Consensus 430 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 476 (527)
.+||.- -.|...|++-.|.+.|.+.+.- +..++..|..|..+|.-
T Consensus 328 tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 123332 3467788888888888888753 34577888888888863
No 494
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.66 E-value=89 Score=17.59 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 043284 468 SLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~ 487 (527)
-.++-.+...|++++|+.++
T Consensus 5 y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34455556666666666663
No 495
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=6e+02 Score=27.05 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 342 EDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
..+...++.....-...++..++.++..|.+..+ +.....++..
T Consensus 610 ~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~le~~ 653 (911)
T KOG2034|consen 610 NQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYLEII 653 (911)
T ss_pred HHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHHHHH
Confidence 3444444444443334566777777776665433 3334444443
No 496
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.14 E-value=2.4e+02 Score=22.36 Aligned_cols=49 Identities=6% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043284 429 VFTYNMLIQGFCKIGN-AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYES 477 (527)
Q Consensus 429 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 477 (527)
...|..++.+.....- ---+..+|.-+.+.+..++..-|..++.++.+-
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3445566665544443 223455555555555556666666666555443
No 497
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=3.5e+02 Score=24.28 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=98.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHhH
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVT-------HTTILGGYVWRGDIENAKRVFGDILDR----GWVPDATTY 258 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 258 (527)
.+.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|++..--+......+. .-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 456677889999999999999999998877654 455777888899887766655443321 112233444
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCCHHhH
Q 043284 259 TVLMDGYIKL-GRLTDAVKVMDEMEDNGVEPNEV-----TYGVMIEAFCKGKKSGEARNLLDDML----QRKYVPSSALC 328 (527)
Q Consensus 259 ~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 328 (527)
..++..+... ..++.-+++.....+...+-... .-..++..+.+.|.+.+|+.+...+. +.+.+++..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5556555433 45677777777666543222222 12346778889999999988766554 44445544332
Q ss_pred HH-HHHHHHhcCCHhHHHHHHHHH
Q 043284 329 CK-VIDLLCEEGKVEDACELWKRL 351 (527)
Q Consensus 329 ~~-l~~~~~~~~~~~~a~~~~~~~ 351 (527)
.. --.+|-...+..++..-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHH
Confidence 21 123444445555554444433
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.48 E-value=1.9e+02 Score=21.03 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 346 ELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
+.++++...+....+.....|...|.+.|+.+.+.+-|+.-+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3444444443333333334455556666666666665555433
No 499
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.30 E-value=4.5e+02 Score=25.37 Aligned_cols=356 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
.+.++..|...|+..+|-++.+++.. +..-....-+++.-.+.-..|.-+.-.+...+...+...-..+..++.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v------sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfs 290 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV------SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFS 290 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC------CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCch
Q ss_pred hcC--------CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 043284 161 QNK--------RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 161 ~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (527)
+.+ +...|...|+.+..+ ...-+...-+++-..-...|+.+. .+.|++ +...+|+-|..
T Consensus 291 r~~~slddl~ldiP~a~~~~esiv~K-a~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFl 357 (645)
T KOG0403|consen 291 RKGGSLDDLVLDIPSARYDFESIVPK-APSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFL 357 (645)
T ss_pred hhccccccccccCcchhhhhhhhccc-CCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHh
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH----H
Q 043284 233 RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG----E 308 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~ 308 (527)
.|+..+..+.++.+-.....|-...+..-+..=.++..-+.|-.++..+.-. +-++...-+.+...+-...+.. .
T Consensus 358 sgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~ 436 (645)
T KOG0403|consen 358 SGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPR 436 (645)
T ss_pred cCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccc
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH---------------------hCCCCCCHhhHHHHH
Q 043284 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL---------------------RKNCMPDNAISSTII 367 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------~~~~~~~~~~~~~l~ 367 (527)
|.+.+...+.+-+.-+.-.-..+=....+..-...+.+.++.+. ...+..-..-...|+
T Consensus 437 a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LL 516 (645)
T KOG0403|consen 437 ASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLL 516 (645)
T ss_pred cHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN--- 444 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 444 (527)
.-|.-.|+..+|...+.++.-..-.....+-+++.+.-+.|+-...+.+++..... ...|-+.|-++|.+..+
T Consensus 517 eEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~dsl~ 592 (645)
T KOG0403|consen 517 EEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYDSLP 592 (645)
T ss_pred HHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhccCc
Q ss_pred ---------HHHHHHHHHHHHHCCC
Q 043284 445 ---------AKEGIRILEEMLDKGC 460 (527)
Q Consensus 445 ---------~~~A~~~~~~~~~~~~ 460 (527)
+++-..+.++....|+
T Consensus 593 DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 593 DLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred ccccCCCcHHHHHHHHHHHHHHcCc
No 500
>PRK09857 putative transposase; Provisional
Probab=33.27 E-value=3.7e+02 Score=24.39 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 426 (527)
...++.++-.++++.+....+......-+++.-+...|.-++++++..+|...|+.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred hhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444444444442222222222223333333334333444444444444443
Done!