Query 043284
Match_columns 527
No_of_seqs 684 out of 2979
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 05:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-40 6.7E-45 333.6 45.5 450 40-505 83-591 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.2E-40 2.1E-44 329.9 43.9 457 52-526 64-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.7E-30 3.3E-34 241.2 47.3 382 47-478 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-29 8.3E-34 238.5 47.4 376 121-506 6-381 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.3E-29 1.1E-33 241.0 24.2 202 135-337 11-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 5.9E-27 2E-31 230.9 40.1 449 43-504 8-489 (514)
7 4g26_A Pentatricopeptide repea 100.0 4.1E-29 1.4E-33 240.3 23.3 205 97-303 9-223 (501)
8 2gw1_A Mitochondrial precursor 100.0 4.5E-26 1.5E-30 224.6 38.0 440 77-526 5-479 (514)
9 3fp2_A TPR repeat-containing p 100.0 6.5E-25 2.2E-29 217.6 42.0 444 41-502 25-500 (537)
10 3fp2_A TPR repeat-containing p 99.9 1.5E-24 5.1E-29 215.0 36.7 429 78-526 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2E-24 6.7E-29 209.1 35.8 303 39-354 24-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 1.3E-23 4.6E-28 203.2 40.6 328 59-422 10-357 (450)
13 2xm6_A Protein corresponding t 99.9 2.8E-19 9.5E-24 174.4 50.4 350 115-494 40-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 1.4E-20 4.8E-25 176.0 38.5 323 44-423 6-335 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 1.7E-20 5.9E-25 175.4 38.9 327 149-506 3-348 (359)
16 2ooe_A Cleavage stimulation fa 99.9 2.3E-19 7.9E-24 176.8 44.8 421 64-495 2-494 (530)
17 2xm6_A Protein corresponding t 99.9 1.5E-18 5.3E-23 169.2 48.5 352 77-459 38-433 (490)
18 2ooe_A Cleavage stimulation fa 99.9 4.2E-19 1.4E-23 175.0 44.5 414 101-525 2-492 (530)
19 3hym_B Cell division cycle pro 99.9 6.6E-20 2.3E-24 169.3 32.1 287 38-335 19-314 (330)
20 3hym_B Cell division cycle pro 99.9 2.9E-19 1E-23 165.0 33.6 284 114-404 22-314 (330)
21 1fch_A Peroxisomal targeting s 99.9 6E-20 2.1E-24 172.5 27.0 292 196-490 36-356 (368)
22 1fch_A Peroxisomal targeting s 99.9 9.8E-20 3.3E-24 171.0 26.9 307 51-384 35-354 (368)
23 1xi4_A Clathrin heavy chain; a 99.9 6.2E-17 2.1E-21 165.3 47.4 387 40-487 984-1378(1630)
24 4eqf_A PEX5-related protein; a 99.9 1.2E-19 4.2E-24 170.1 24.7 236 40-283 64-309 (365)
25 4g1t_A Interferon-induced prot 99.8 2.7E-18 9.1E-23 167.1 30.7 386 41-459 51-460 (472)
26 1b89_A Protein (clathrin heavy 99.8 4.4E-19 1.5E-23 162.5 23.1 381 50-488 12-412 (449)
27 4eqf_A PEX5-related protein; a 99.8 3.9E-19 1.3E-23 166.7 22.5 268 219-489 64-352 (365)
28 1xi4_A Clathrin heavy chain; a 99.8 9.9E-16 3.4E-20 156.6 48.4 320 41-414 1049-1375(1630)
29 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.7E-23 160.2 25.6 235 39-283 19-268 (327)
30 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.6E-21 153.5 42.1 384 111-525 48-459 (472)
31 1b89_A Protein (clathrin heavy 99.8 4.5E-18 1.5E-22 155.9 25.6 283 89-416 14-304 (449)
32 3cv0_A Peroxisome targeting si 99.8 5.6E-18 1.9E-22 156.1 24.4 233 78-318 21-268 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 5E-17 1.7E-21 146.1 27.0 83 374-457 180-263 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.2E-21 143.5 29.5 260 230-501 9-272 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 5.7E-16 2E-20 148.6 26.3 348 82-459 7-388 (452)
36 3uq3_A Heat shock protein STI1 99.7 7.3E-16 2.5E-20 136.6 25.2 224 258-494 8-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.7 5.2E-16 1.8E-20 148.9 25.8 375 45-456 7-419 (452)
38 2pl2_A Hypothetical conserved 99.7 1.7E-16 5.7E-21 136.4 18.8 197 39-245 3-210 (217)
39 4e6h_A MRNA 3'-END-processing 99.7 1.7E-13 5.9E-18 135.7 41.7 433 56-496 47-573 (679)
40 2pl2_A Hypothetical conserved 99.7 5.5E-16 1.9E-20 133.1 20.1 198 76-281 3-211 (217)
41 3u4t_A TPR repeat-containing p 99.7 3.5E-15 1.2E-19 133.4 25.5 237 41-284 3-250 (272)
42 3uq3_A Heat shock protein STI1 99.7 4.1E-15 1.4E-19 131.7 25.7 225 221-458 6-236 (258)
43 2q7f_A YRRB protein; TPR, prot 99.7 6.2E-16 2.1E-20 135.7 19.3 204 37-249 19-222 (243)
44 3u4t_A TPR repeat-containing p 99.7 6.5E-15 2.2E-19 131.7 25.9 247 257-506 5-263 (272)
45 2h6f_A Protein farnesyltransfe 99.7 3.4E-15 1.2E-19 138.7 24.7 230 44-284 100-348 (382)
46 4e6h_A MRNA 3'-END-processing 99.7 5.3E-13 1.8E-17 132.2 41.1 424 96-525 50-570 (679)
47 2ho1_A Type 4 fimbrial biogene 99.7 2.6E-15 8.8E-20 132.6 21.6 201 41-249 37-238 (252)
48 1ouv_A Conserved hypothetical 99.7 1.3E-13 4.5E-18 123.1 31.8 226 255-497 6-255 (273)
49 2h6f_A Protein farnesyltransfe 99.7 1.6E-14 5.4E-19 134.2 26.2 247 221-508 98-363 (382)
50 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.4E-21 161.6 8.5 119 149-267 127-248 (1134)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.6E-20 137.0 16.9 250 52-313 16-269 (275)
52 1ouv_A Conserved hypothetical 99.7 2.5E-13 8.5E-18 121.4 31.0 223 77-319 5-251 (273)
53 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-16 4.5E-21 158.0 10.1 119 359-477 126-249 (1134)
54 2ho1_A Type 4 fimbrial biogene 99.7 1E-13 3.5E-18 122.2 27.4 202 293-498 40-243 (252)
55 2vq2_A PILW, putative fimbrial 99.7 4.9E-14 1.7E-18 121.9 24.1 201 78-282 8-209 (225)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.7E-15 2.6E-19 131.3 19.1 223 90-319 17-244 (275)
57 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-14 9.6E-19 125.1 21.6 209 291-503 24-232 (243)
58 2vq2_A PILW, putative fimbrial 99.6 2E-13 7E-18 117.9 26.2 202 293-497 11-215 (225)
59 3sf4_A G-protein-signaling mod 99.6 5.3E-15 1.8E-19 140.6 15.9 276 42-317 10-334 (406)
60 4a1s_A PINS, partner of inscut 99.6 1.4E-14 4.7E-19 138.1 17.3 276 188-495 51-374 (411)
61 3sf4_A G-protein-signaling mod 99.6 1.6E-14 5.6E-19 137.2 17.7 242 76-317 7-294 (406)
62 4a1s_A PINS, partner of inscut 99.6 2.8E-14 9.6E-19 135.9 19.1 240 43-282 50-330 (411)
63 3ro2_A PINS homolog, G-protein 99.6 3.7E-14 1.3E-18 130.9 17.6 204 44-247 8-250 (338)
64 2ond_A Cleavage stimulation fa 99.6 7.1E-13 2.4E-17 120.5 25.2 218 58-284 33-270 (308)
65 3ro2_A PINS homolog, G-protein 99.6 4.8E-14 1.7E-18 130.1 17.3 239 79-317 6-290 (338)
66 3ulq_A Response regulator aspa 99.6 1.7E-13 5.7E-18 129.1 21.0 297 52-352 23-366 (383)
67 2ond_A Cleavage stimulation fa 99.6 5.3E-12 1.8E-16 114.7 29.5 167 327-495 101-272 (308)
68 3vtx_A MAMA; tetratricopeptide 99.6 3.9E-13 1.3E-17 112.2 20.0 165 42-214 6-170 (184)
69 3ulq_A Response regulator aspa 99.6 7.2E-13 2.5E-17 124.7 23.2 229 261-492 109-367 (383)
70 3vtx_A MAMA; tetratricopeptide 99.6 9.4E-13 3.2E-17 109.8 21.0 167 77-249 4-170 (184)
71 3nf1_A KLC 1, kinesin light ch 99.5 2.8E-14 9.6E-19 130.2 10.4 174 40-213 26-223 (311)
72 4abn_A Tetratricopeptide repea 99.5 4.2E-13 1.4E-17 129.5 18.0 217 92-316 82-318 (474)
73 4abn_A Tetratricopeptide repea 99.5 8.5E-13 2.9E-17 127.4 19.1 217 128-351 82-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 2.6E-13 8.8E-18 123.7 12.7 174 75-248 24-223 (311)
75 3q15_A PSP28, response regulat 99.5 1.1E-11 3.7E-16 116.4 23.7 303 45-352 14-363 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.5 8.2E-13 2.8E-17 132.5 16.9 166 40-213 8-173 (723)
77 3q15_A PSP28, response regulat 99.5 1.4E-11 4.9E-16 115.6 23.9 228 262-492 108-364 (378)
78 4i17_A Hypothetical protein; T 99.5 5E-11 1.7E-15 103.1 25.2 205 288-503 5-219 (228)
79 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.9E-15 109.3 28.8 301 188-496 17-352 (373)
80 3as5_A MAMA; tetratricopeptide 99.4 1.2E-11 4.1E-16 103.0 19.4 162 44-213 11-172 (186)
81 1hz4_A MALT regulatory protein 99.4 1.3E-10 4.5E-15 108.8 28.1 269 154-423 19-322 (373)
82 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.6E-16 123.8 19.2 166 77-248 8-173 (723)
83 3as5_A MAMA; tetratricopeptide 99.4 4.4E-11 1.5E-15 99.5 19.6 164 79-248 9-172 (186)
84 4i17_A Hypothetical protein; T 99.3 1.9E-10 6.4E-15 99.4 21.6 201 253-465 5-214 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 9.8E-12 3.4E-16 111.4 13.8 161 53-213 13-197 (283)
86 3qky_A Outer membrane assembly 99.3 2.5E-11 8.6E-16 107.4 16.2 190 40-249 14-224 (261)
87 1qqe_A Vesicular transport pro 99.3 1.1E-10 3.6E-15 105.1 17.3 165 327-493 79-269 (292)
88 2uy1_A Cleavage stimulation fa 99.3 3.7E-09 1.3E-13 101.8 28.9 379 53-492 6-412 (493)
89 2uy1_A Cleavage stimulation fa 99.3 3E-09 1E-13 102.5 28.2 366 45-457 19-412 (493)
90 3dra_A Protein farnesyltransfe 99.3 7.1E-09 2.4E-13 92.3 27.5 221 54-283 46-286 (306)
91 3edt_B KLC 2, kinesin light ch 99.3 7.1E-11 2.4E-15 105.7 14.5 227 266-493 12-281 (283)
92 3mv2_B Coatomer subunit epsilo 99.3 1.9E-09 6.3E-14 94.9 22.8 249 228-498 21-287 (310)
93 3mv2_B Coatomer subunit epsilo 99.3 6.4E-09 2.2E-13 91.5 26.2 250 192-466 20-288 (310)
94 1qqe_A Vesicular transport pro 99.3 3.2E-10 1.1E-14 101.9 18.3 195 88-282 47-267 (292)
95 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.3E-10 1.1E-14 97.5 17.6 186 43-250 6-214 (225)
96 3urz_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 96.2 16.5 161 45-214 8-186 (208)
97 4ga2_A E3 SUMO-protein ligase 99.2 4.1E-11 1.4E-15 95.7 10.0 146 47-200 3-149 (150)
98 2pzi_A Probable serine/threoni 99.2 1.5E-10 5.1E-15 116.9 16.5 174 89-270 402-583 (681)
99 2r5s_A Uncharacterized protein 99.2 2.6E-10 9E-15 93.9 14.7 164 42-212 7-171 (176)
100 3qky_A Outer membrane assembly 99.2 6.7E-10 2.3E-14 98.2 18.2 211 76-309 13-251 (261)
101 3urz_A Uncharacterized protein 99.2 8.2E-10 2.8E-14 93.7 17.3 166 77-249 3-186 (208)
102 2fo7_A Synthetic consensus TPR 99.2 2E-09 6.8E-14 84.0 16.2 128 44-177 4-131 (136)
103 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.3E-13 82.3 17.5 130 363-494 4-133 (136)
104 3qou_A Protein YBBN; thioredox 99.1 1.1E-09 3.8E-14 98.0 15.8 166 77-248 116-283 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.9E-09 1.7E-13 90.2 18.7 187 77-285 3-214 (225)
106 3dra_A Protein farnesyltransfe 99.1 7.1E-08 2.4E-12 85.8 26.2 230 272-505 50-300 (306)
107 2pzi_A Probable serine/threoni 99.1 1.2E-09 4E-14 110.3 16.0 172 125-304 402-582 (681)
108 3rjv_A Putative SEL1 repeat pr 99.1 2.5E-08 8.5E-13 84.7 21.1 106 239-354 5-118 (212)
109 4ga2_A E3 SUMO-protein ligase 99.1 4.8E-10 1.6E-14 89.5 9.7 145 85-235 4-149 (150)
110 2r5s_A Uncharacterized protein 99.1 1.5E-09 5E-14 89.4 12.6 159 119-282 11-171 (176)
111 3rjv_A Putative SEL1 repeat pr 99.1 1.8E-08 6.2E-13 85.6 19.2 163 325-495 18-199 (212)
112 2vsy_A XCC0866; transferase, g 99.1 4E-09 1.4E-13 104.6 17.3 154 54-215 2-158 (568)
113 4gco_A Protein STI-1; structur 99.0 4.7E-09 1.6E-13 80.7 13.4 108 43-156 15-122 (126)
114 3qou_A Protein YBBN; thioredox 99.0 7.3E-09 2.5E-13 92.7 16.7 159 362-523 119-282 (287)
115 2vsy_A XCC0866; transferase, g 99.0 9.2E-09 3.1E-13 102.0 19.1 151 304-457 3-156 (568)
116 2lni_A Stress-induced-phosphop 99.0 3.1E-09 1.1E-13 82.7 12.2 126 32-163 7-132 (133)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 4.9E-09 1.7E-13 94.9 12.4 228 53-311 3-253 (307)
118 3q7a_A Farnesyltransferase alp 99.0 4.1E-07 1.4E-11 81.7 24.2 177 50-235 63-257 (349)
119 4f3v_A ESX-1 secretion system 98.9 1.5E-08 5E-13 88.0 13.4 190 53-249 18-237 (282)
120 3gyz_A Chaperone protein IPGC; 98.9 3.5E-09 1.2E-13 84.0 8.6 99 77-178 35-133 (151)
121 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.5E-13 91.0 13.9 132 44-176 39-182 (307)
122 1a17_A Serine/threonine protei 98.9 4.3E-08 1.5E-12 79.5 14.8 129 42-176 14-144 (166)
123 2c2l_A CHIP, carboxy terminus 98.9 3.8E-09 1.3E-13 94.2 8.9 192 42-248 5-198 (281)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 6.1E-07 2.1E-11 80.5 23.3 165 328-492 78-265 (293)
125 2vgx_A Chaperone SYCD; alterna 98.9 1.3E-08 4.6E-13 80.7 10.9 110 63-178 9-118 (148)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.8E-07 6.2E-12 79.4 18.6 126 44-178 9-150 (213)
127 3u3w_A Transcriptional activat 98.9 4.1E-07 1.4E-11 81.7 21.7 163 155-317 81-264 (293)
128 4f3v_A ESX-1 secretion system 98.9 5.7E-08 2E-12 84.3 15.1 189 90-284 18-237 (282)
129 4gco_A Protein STI-1; structur 98.9 7.1E-08 2.4E-12 74.0 14.0 98 78-178 13-110 (126)
130 3q7a_A Farnesyltransferase alp 98.9 2.6E-06 8.8E-11 76.6 25.7 242 234-506 68-345 (349)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.6E-07 8.9E-12 78.5 18.0 130 80-215 8-151 (213)
132 1a17_A Serine/threonine protei 98.8 7.4E-08 2.5E-12 78.1 13.9 128 79-211 14-143 (166)
133 3gyz_A Chaperone protein IPGC; 98.8 3.7E-08 1.3E-12 78.0 11.5 104 40-150 35-138 (151)
134 2e2e_A Formate-dependent nitri 98.8 6.5E-08 2.2E-12 79.5 13.3 121 52-178 21-144 (177)
135 2c2l_A CHIP, carboxy terminus 98.8 2.2E-08 7.4E-13 89.3 10.9 99 77-178 3-101 (281)
136 2lni_A Stress-induced-phosphop 98.8 1.7E-07 6E-12 72.5 14.8 120 75-199 13-132 (133)
137 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.1E-12 73.1 13.8 116 43-164 14-129 (131)
138 3u3w_A Transcriptional activat 98.8 2.5E-07 8.5E-12 83.1 17.3 61 222-282 198-264 (293)
139 2qfc_A PLCR protein; TPR, HTH, 98.8 3.3E-07 1.1E-11 82.2 18.1 167 116-282 77-264 (293)
140 4gcn_A Protein STI-1; structur 98.8 9.6E-08 3.3E-12 73.4 12.0 105 43-152 10-119 (127)
141 1na0_A Designed protein CTPR3; 98.8 2.4E-07 8.2E-12 70.7 14.4 95 44-143 12-106 (125)
142 2vgx_A Chaperone SYCD; alterna 98.8 5.3E-08 1.8E-12 77.2 10.6 115 382-498 9-123 (148)
143 3gw4_A Uncharacterized protein 98.8 8.1E-08 2.8E-12 80.9 12.5 156 337-493 4-176 (203)
144 2xcb_A PCRH, regulatory protei 98.8 7.6E-08 2.6E-12 75.8 11.4 99 77-178 17-115 (142)
145 1p5q_A FKBP52, FK506-binding p 98.8 1.3E-07 4.6E-12 86.5 14.6 132 42-176 148-292 (336)
146 1p5q_A FKBP52, FK506-binding p 98.8 1.2E-08 4E-13 93.5 7.3 152 54-211 126-291 (336)
147 3gw4_A Uncharacterized protein 98.7 7.8E-08 2.7E-12 81.0 11.7 158 52-212 3-174 (203)
148 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.9E-12 76.9 12.7 127 371-499 21-150 (177)
149 2fbn_A 70 kDa peptidylprolyl i 98.7 2.4E-08 8.3E-13 83.9 7.6 148 52-205 15-176 (198)
150 2xcb_A PCRH, regulatory protei 98.7 1.5E-07 5E-12 74.1 11.7 99 41-144 18-116 (142)
151 1na0_A Designed protein CTPR3; 98.7 5.6E-07 1.9E-11 68.6 14.7 98 78-178 9-106 (125)
152 2vyi_A SGTA protein; chaperone 98.7 3.7E-07 1.3E-11 70.3 13.8 119 77-200 11-129 (131)
153 2dba_A Smooth muscle cell asso 98.7 1.6E-07 5.5E-12 74.4 11.9 116 39-157 26-141 (148)
154 3upv_A Heat shock protein STI1 98.7 2.6E-07 8.8E-12 70.9 12.6 95 44-143 7-101 (126)
155 2xev_A YBGF; tetratricopeptide 98.7 5.7E-07 1.9E-11 69.3 14.3 102 43-144 4-106 (129)
156 3dss_A Geranylgeranyl transfer 98.7 2.1E-05 7.1E-10 70.4 25.9 162 341-507 126-318 (331)
157 3dss_A Geranylgeranyl transfer 98.7 1.7E-05 5.9E-10 70.9 25.3 182 130-319 90-304 (331)
158 1hxi_A PEX5, peroxisome target 98.7 1.5E-07 5.2E-12 71.6 10.1 99 41-144 17-115 (121)
159 1elw_A TPR1-domain of HOP; HOP 98.7 8.3E-07 2.9E-11 66.8 14.1 96 44-144 7-102 (118)
160 2kck_A TPR repeat; tetratricop 98.7 4.8E-07 1.6E-11 67.5 12.6 102 40-144 5-107 (112)
161 3upv_A Heat shock protein STI1 98.6 6.4E-07 2.2E-11 68.7 12.8 98 78-178 4-101 (126)
162 4gcn_A Protein STI-1; structur 98.6 5.6E-07 1.9E-11 69.1 12.4 57 365-421 13-69 (127)
163 3sz7_A HSC70 cochaperone (SGT) 98.6 5.3E-07 1.8E-11 72.9 12.7 100 40-144 10-109 (164)
164 3q49_B STIP1 homology and U bo 98.6 2.2E-07 7.6E-12 72.5 10.0 99 40-143 8-106 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 5.9E-07 2E-11 72.6 12.8 100 76-178 9-108 (164)
166 4b4t_Q 26S proteasome regulato 98.6 1.2E-06 4E-11 83.7 16.7 168 44-211 7-201 (434)
167 2fbn_A 70 kDa peptidylprolyl i 98.6 4.7E-07 1.6E-11 75.9 12.1 130 43-175 40-183 (198)
168 1elw_A TPR1-domain of HOP; HOP 98.6 2.1E-06 7.3E-11 64.5 14.7 109 394-504 4-112 (118)
169 3q49_B STIP1 homology and U bo 98.6 1.6E-06 5.6E-11 67.4 14.3 104 391-496 6-109 (137)
170 2kck_A TPR repeat; tetratricop 98.6 1.3E-06 4.3E-11 65.1 12.7 104 392-497 4-110 (112)
171 2dba_A Smooth muscle cell asso 98.6 3E-06 1E-10 66.8 15.3 111 392-505 26-140 (148)
172 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-06 4.8E-11 67.0 11.7 97 397-494 7-109 (131)
173 1hxi_A PEX5, peroxisome target 98.5 1.2E-06 4.3E-11 66.4 10.4 96 80-178 19-114 (121)
174 2hr2_A Hypothetical protein; a 98.5 1.5E-06 5.3E-11 67.9 10.9 98 44-143 14-131 (159)
175 1wao_1 Serine/threonine protei 98.5 1.5E-07 5.2E-12 90.5 6.3 123 45-173 10-134 (477)
176 3k9i_A BH0479 protein; putativ 98.5 4.4E-07 1.5E-11 68.6 7.6 90 53-144 2-91 (117)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2E-07 6.8E-12 89.3 6.9 153 54-212 247-413 (457)
178 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.8E-11 66.5 10.9 96 45-143 8-108 (131)
179 4b4t_Q 26S proteasome regulato 98.4 1E-05 3.4E-10 77.1 18.0 167 152-318 58-244 (434)
180 3rkv_A Putative peptidylprolyl 98.4 1.1E-06 3.9E-11 70.7 9.6 101 42-144 12-127 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.1E-06 7.2E-11 82.1 12.9 132 43-177 270-414 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.4 2.1E-06 7E-11 79.5 12.3 123 44-169 226-361 (370)
183 2xev_A YBGF; tetratricopeptide 98.4 7.6E-06 2.6E-10 62.8 13.8 98 80-178 4-105 (129)
184 3rkv_A Putative peptidylprolyl 98.4 6.3E-06 2.2E-10 66.3 12.6 111 395-506 12-139 (162)
185 1wao_1 Serine/threonine protei 98.3 1.8E-06 6.1E-11 83.0 10.6 124 81-209 9-134 (477)
186 3ro3_A PINS homolog, G-protein 98.3 1.8E-06 6.3E-11 69.3 9.0 134 43-176 11-156 (164)
187 3k9i_A BH0479 protein; putativ 98.3 1E-06 3.4E-11 66.5 6.8 88 90-178 2-90 (117)
188 3ro3_A PINS homolog, G-protein 98.3 5.1E-06 1.8E-10 66.6 10.3 131 362-492 11-157 (164)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 3E-06 1E-10 77.5 9.6 94 431-525 232-328 (338)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 2.2E-06 7.6E-11 78.4 8.6 146 44-214 182-328 (338)
191 1dce_A Protein (RAB geranylger 98.2 8.4E-05 2.9E-09 72.8 19.9 166 340-508 44-236 (567)
192 2hr2_A Hypothetical protein; a 98.2 1.3E-05 4.4E-10 62.7 10.7 107 396-504 13-142 (159)
193 1ihg_A Cyclophilin 40; ppiase 98.2 1.2E-05 3.9E-10 74.5 12.3 122 80-204 225-360 (370)
194 3n71_A Histone lysine methyltr 98.2 5.7E-06 1.9E-10 79.0 10.0 127 51-177 319-463 (490)
195 1dce_A Protein (RAB geranylger 98.1 0.00016 5.5E-09 70.8 19.4 138 130-272 89-243 (567)
196 1klx_A Cysteine rich protein B 98.1 9.7E-05 3.3E-09 57.3 13.9 111 375-495 10-128 (138)
197 2l6j_A TPR repeat-containing p 98.0 4.7E-06 1.6E-10 61.9 5.0 58 46-106 9-66 (111)
198 2l6j_A TPR repeat-containing p 98.0 4.8E-06 1.7E-10 61.9 5.0 99 77-178 3-107 (111)
199 2kat_A Uncharacterized protein 98.0 3E-05 1E-09 58.0 8.7 81 58-143 2-82 (115)
200 1zu2_A Mitochondrial import re 98.0 1.8E-05 6.1E-10 61.7 7.4 96 52-154 13-129 (158)
201 2kat_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 57.8 8.7 81 95-178 2-82 (115)
202 3n71_A Histone lysine methyltr 97.9 8.2E-05 2.8E-09 71.0 12.2 125 124-248 319-463 (490)
203 3ma5_A Tetratricopeptide repea 97.9 1.1E-05 3.7E-10 58.7 4.9 62 42-106 8-69 (100)
204 3lvg_A Clathrin heavy chain 1; 97.9 6.9E-07 2.4E-11 81.4 -2.2 407 39-486 52-534 (624)
205 1na3_A Designed protein CTPR2; 97.9 0.00011 3.6E-09 52.0 9.7 79 79-160 10-88 (91)
206 1klx_A Cysteine rich protein B 97.9 0.00042 1.5E-08 53.6 13.8 8 167-174 13-20 (138)
207 1na3_A Designed protein CTPR2; 97.9 0.00013 4.5E-09 51.5 10.0 78 43-125 11-88 (91)
208 1zu2_A Mitochondrial import re 97.7 0.00011 3.6E-09 57.4 7.6 94 89-188 13-127 (158)
209 3ma5_A Tetratricopeptide repea 97.7 0.00013 4.4E-09 52.9 7.7 65 76-142 5-69 (100)
210 3ly7_A Transcriptional activat 97.7 0.00072 2.5E-08 60.7 13.0 30 56-88 214-243 (372)
211 2kc7_A BFR218_protein; tetratr 97.5 0.00034 1.2E-08 50.3 7.7 64 437-501 8-72 (99)
212 3bee_A Putative YFRE protein; 97.5 0.00085 2.9E-08 47.4 8.7 65 40-107 5-72 (93)
213 3qww_A SET and MYND domain-con 97.4 0.00035 1.2E-08 65.5 8.1 89 54-142 311-410 (433)
214 3ly7_A Transcriptional activat 97.4 0.0022 7.4E-08 57.7 12.4 69 426-496 274-342 (372)
215 2kc7_A BFR218_protein; tetratr 97.4 0.0012 4.1E-08 47.3 9.0 85 45-142 4-89 (99)
216 3qwp_A SET and MYND domain-con 97.3 0.0014 4.9E-08 61.5 10.9 61 80-140 331-397 (429)
217 3bee_A Putative YFRE protein; 97.1 0.0069 2.4E-07 42.7 10.6 70 426-496 3-75 (93)
218 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0047 1.6E-07 44.8 9.7 74 428-501 4-83 (104)
219 3u64_A Protein TP_0956; tetrat 97.0 0.12 4.2E-06 44.5 18.3 82 410-495 179-271 (301)
220 3qwp_A SET and MYND domain-con 97.0 0.0042 1.4E-07 58.3 10.4 25 187-211 373-397 (429)
221 3qww_A SET and MYND domain-con 96.9 0.0019 6.6E-08 60.5 7.6 86 91-176 311-409 (433)
222 4h7y_A Dual specificity protei 96.9 0.028 9.4E-07 42.6 11.9 116 392-509 11-139 (161)
223 1pc2_A Mitochondria fission pr 96.9 0.015 5.2E-07 44.7 10.8 65 392-457 30-99 (152)
224 3mkq_B Coatomer subunit alpha; 96.8 0.12 4.1E-06 40.9 18.6 133 45-211 9-141 (177)
225 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0084 2.9E-07 43.4 9.1 67 77-143 4-75 (104)
226 3mkq_A Coatomer beta'-subunit; 96.8 0.051 1.7E-06 56.1 18.3 152 88-280 609-761 (814)
227 1pc2_A Mitochondria fission pr 96.8 0.014 4.7E-07 45.0 10.2 87 410-498 14-105 (152)
228 3mkq_A Coatomer beta'-subunit; 96.7 0.094 3.2E-06 54.1 19.2 46 335-386 662-707 (814)
229 1wy6_A Hypothetical protein ST 96.6 0.13 4.5E-06 38.1 14.9 59 366-424 97-155 (172)
230 1wy6_A Hypothetical protein ST 96.5 0.16 5.4E-06 37.7 17.7 141 124-287 17-157 (172)
231 3mkq_B Coatomer subunit alpha; 96.3 0.31 1.1E-05 38.5 17.1 130 332-490 12-141 (177)
232 3u64_A Protein TP_0956; tetrat 96.2 0.52 1.8E-05 40.7 19.5 85 236-322 179-272 (301)
233 4ady_A RPN2, 26S proteasome re 96.0 1.7 5.8E-05 44.5 30.1 25 152-176 233-257 (963)
234 3lvg_A Clathrin heavy chain 1; 95.8 5.7E-06 2E-10 75.5 -15.5 223 78-338 54-276 (624)
235 1nzn_A CGI-135 protein, fissio 95.8 0.073 2.5E-06 39.3 8.8 85 411-497 18-107 (126)
236 4h7y_A Dual specificity protei 95.6 0.19 6.4E-06 38.2 10.3 53 304-357 74-126 (161)
237 1nzn_A CGI-135 protein, fissio 95.4 0.18 6E-06 37.3 9.7 88 374-464 15-107 (126)
238 4b4t_P 26S proteasome regulato 95.3 1.9 6.4E-05 40.5 22.5 95 224-318 141-246 (445)
239 1v54_E Cytochrome C oxidase po 95.3 0.38 1.3E-05 33.5 10.2 69 441-509 21-90 (109)
240 4fhn_B Nucleoporin NUP120; pro 95.3 0.76 2.6E-05 49.3 18.2 169 44-237 815-988 (1139)
241 4b4t_P 26S proteasome regulato 94.5 3.1 0.00011 39.0 19.0 54 54-107 29-85 (445)
242 2ff4_A Probable regulatory pro 94.3 0.74 2.5E-05 42.4 13.3 118 53-189 127-249 (388)
243 2y69_E Cytochrome C oxidase su 94.2 0.8 2.7E-05 33.8 10.2 66 444-509 68-133 (152)
244 4ady_A RPN2, 26S proteasome re 93.9 6.6 0.00023 40.3 34.5 266 193-467 382-664 (963)
245 3ffl_A Anaphase-promoting comp 93.9 0.74 2.5E-05 35.7 10.2 63 42-105 21-90 (167)
246 3ffl_A Anaphase-promoting comp 93.5 0.48 1.7E-05 36.8 8.6 102 77-178 19-151 (167)
247 3o48_A Mitochondria fission 1 93.5 1.2 4E-05 33.1 10.2 72 426-497 37-111 (134)
248 1y8m_A FIS1; mitochondria, unk 92.5 2.6 8.9E-05 31.7 12.4 72 426-497 36-110 (144)
249 2wpv_A GET4, UPF0363 protein Y 92.5 5.2 0.00018 35.1 18.4 141 81-241 36-189 (312)
250 4gns_B Protein CSD3, chitin bi 92.3 0.71 2.4E-05 46.2 10.2 47 462-509 611-657 (754)
251 1v54_E Cytochrome C oxidase po 91.8 1.9 6.5E-05 30.0 8.7 63 340-402 25-87 (109)
252 2ff4_A Probable regulatory pro 91.6 0.84 2.9E-05 42.0 9.4 66 400-466 177-247 (388)
253 4gns_B Protein CSD3, chitin bi 91.5 1 3.5E-05 45.1 10.3 48 372-419 349-396 (754)
254 4b4t_R RPN7, 26S proteasome re 91.3 1.1 3.6E-05 42.0 9.9 102 79-180 132-239 (429)
255 4fhn_B Nucleoporin NUP120; pro 90.6 21 0.0007 38.3 22.3 145 152-305 815-986 (1139)
256 2wpv_A GET4, UPF0363 protein Y 90.3 8.9 0.0003 33.7 20.1 81 358-456 132-215 (312)
257 2y69_E Cytochrome C oxidase su 88.8 3.9 0.00013 30.3 8.7 63 340-402 68-130 (152)
258 3lpz_A GET4 (YOR164C homolog); 88.7 12 0.00042 33.1 25.6 112 222-348 37-159 (336)
259 3txn_A 26S proteasome regulato 88.3 15 0.00051 33.6 27.3 93 225-317 104-208 (394)
260 4b4t_R RPN7, 26S proteasome re 87.8 7.1 0.00024 36.4 12.6 100 114-213 131-236 (429)
261 3o48_A Mitochondria fission 1 87.8 6.9 0.00024 29.1 11.0 22 366-387 84-105 (134)
262 3txn_A 26S proteasome regulato 87.4 17 0.00058 33.2 22.1 27 80-106 21-47 (394)
263 1zbp_A Hypothetical protein VP 87.2 1.2 4.2E-05 37.7 6.2 117 49-178 5-129 (273)
264 3lpz_A GET4 (YOR164C homolog); 87.0 16 0.00054 32.4 20.3 139 81-239 38-186 (336)
265 1y8m_A FIS1; mitochondria, unk 86.4 8.9 0.0003 28.9 12.6 72 391-464 36-110 (144)
266 1qsa_A Protein (soluble lytic 83.9 34 0.0012 33.5 30.5 116 339-457 228-347 (618)
267 2p58_C Putative type III secre 83.5 9.1 0.00031 26.6 8.0 82 408-497 21-102 (116)
268 1zbp_A Hypothetical protein VP 83.4 8 0.00027 32.9 9.3 54 370-423 7-60 (273)
269 2uwj_G Type III export protein 81.6 8.8 0.0003 26.6 7.1 82 408-497 20-101 (115)
270 1qsa_A Protein (soluble lytic 79.2 50 0.0017 32.4 38.8 79 115-200 73-151 (618)
271 4gq2_M Nucleoporin NUP120; bet 75.9 29 0.001 36.2 12.8 134 44-199 813-950 (950)
272 3esl_A Checkpoint serine/threo 75.3 31 0.0011 27.8 10.1 58 408-465 93-151 (202)
273 3esl_A Checkpoint serine/threo 74.8 32 0.0011 27.8 11.4 58 442-499 92-150 (202)
274 4b4t_S RPN3, 26S proteasome re 69.6 67 0.0023 30.4 12.3 64 114-177 231-298 (523)
275 3mv2_A Coatomer subunit alpha; 68.9 25 0.00084 30.8 8.5 48 131-178 187-236 (325)
276 2d2s_A Exocyst complex compone 64.8 25 0.00086 29.3 7.7 91 83-176 23-118 (235)
277 4a1g_A Mitotic checkpoint seri 59.4 57 0.0019 24.9 10.7 48 448-495 84-132 (152)
278 2zu6_B Programmed cell death p 58.5 56 0.0019 28.6 9.1 23 45-67 7-29 (307)
279 2nsz_A Programmed cell death p 56.9 56 0.0019 24.1 7.7 24 189-212 11-34 (129)
280 2ijq_A Hypothetical protein; s 54.6 39 0.0013 26.1 6.5 56 51-106 42-103 (161)
281 2uwj_G Type III export protein 50.8 60 0.0021 22.6 9.0 86 52-151 17-104 (115)
282 2ion_A PDCD4, programmed cell 49.7 84 0.0029 24.0 8.7 63 364-426 13-77 (152)
283 2ion_A PDCD4, programmed cell 48.4 49 0.0017 25.3 6.3 25 188-212 12-36 (152)
284 1wdy_A 2-5A-dependent ribonucl 47.4 49 0.0017 28.0 7.2 82 369-451 154-238 (285)
285 2r9g_A AAA ATPase, central reg 46.8 1.1E+02 0.0038 24.5 10.5 83 405-488 25-112 (204)
286 2wvi_A Mitotic checkpoint seri 46.6 1E+02 0.0034 23.9 11.0 48 448-495 79-127 (164)
287 4gq2_M Nucleoporin NUP120; bet 44.3 1.8E+02 0.0061 30.4 11.7 48 431-478 899-950 (950)
288 4b4t_S RPN3, 26S proteasome re 44.2 2.2E+02 0.0074 27.1 12.3 64 42-107 232-299 (523)
289 3ltm_A Alpha-REP4; protein eng 43.6 1.2E+02 0.0042 24.1 20.4 13 80-92 35-47 (211)
290 3eiq_C Programmed cell death p 43.5 1.8E+02 0.0062 26.0 14.0 66 363-428 220-287 (358)
291 2nsz_A Programmed cell death p 43.0 97 0.0033 22.8 10.0 63 364-426 11-75 (129)
292 3bge_A Predicted ATPase; struc 41.6 1.3E+02 0.0046 24.0 8.8 54 406-459 19-77 (201)
293 2w2u_A Hypothetical P60 katani 41.6 77 0.0026 21.2 5.9 16 475-490 30-45 (83)
294 2kz2_A Calmodulin, CAM; TR2C, 40.1 84 0.0029 21.2 10.3 73 33-106 4-76 (94)
295 3jxi_A Vanilloid receptor-rela 39.7 56 0.0019 27.3 6.2 20 231-250 13-32 (260)
296 1bpo_A Protein (clathrin); cla 38.8 2.5E+02 0.0085 26.2 14.9 115 53-175 341-455 (494)
297 3mkr_B Coatomer subunit alpha; 38.2 61 0.0021 28.4 5.9 20 52-71 113-132 (320)
298 3hra_A Ankyrin repeat family p 36.9 1.5E+02 0.0051 23.2 8.6 17 158-174 78-94 (201)
299 2v6y_A AAA family ATPase, P60 35.8 96 0.0033 20.6 5.9 16 475-490 22-37 (83)
300 3bu8_A Telomeric repeat-bindin 35.5 1.8E+02 0.0061 23.7 12.3 23 401-423 121-143 (235)
301 2ijq_A Hypothetical protein; s 35.2 1.5E+02 0.0053 22.8 8.3 53 405-457 43-103 (161)
302 3bu8_A Telomeric repeat-bindin 35.1 1.8E+02 0.0063 23.6 11.4 20 194-213 123-142 (235)
303 2zu6_B Programmed cell death p 35.1 2.3E+02 0.0078 24.7 12.7 63 364-426 170-234 (307)
304 3ctd_A Putative ATPase, AAA fa 35.0 1.8E+02 0.0062 23.6 9.9 56 406-461 47-107 (213)
305 3pvs_A Replication-associated 34.6 2.8E+02 0.0097 25.7 13.9 55 406-460 267-326 (447)
306 2jul_A Calsenilin; EF-hand, ca 34.5 2E+02 0.0069 23.9 11.5 132 113-246 110-255 (256)
307 2qx5_A Nucleoporin NIC96; mRNA 34.0 3.6E+02 0.012 26.7 21.8 80 261-351 300-382 (661)
308 1bpo_A Protein (clathrin); cla 34.0 3E+02 0.01 25.7 13.3 142 338-491 342-483 (494)
309 2wvi_A Mitotic checkpoint seri 34.0 1.6E+02 0.0056 22.7 12.9 51 97-147 79-129 (164)
310 2p58_C Putative type III secre 33.3 1.2E+02 0.0042 21.1 10.9 47 370-421 50-96 (116)
311 3hra_A Ankyrin repeat family p 33.0 1.1E+02 0.0038 24.0 6.8 13 372-384 115-127 (201)
312 1wdy_A 2-5A-dependent ribonucl 32.9 2.1E+02 0.0073 23.8 11.4 19 338-356 192-210 (285)
313 1ug3_A EIF4GI, eukaryotic prot 32.9 1.8E+02 0.006 25.9 8.4 26 222-247 13-38 (339)
314 2xig_A Ferric uptake regulatio 32.3 1.6E+02 0.0055 22.2 7.8 35 304-338 40-74 (150)
315 1n11_A Ankyrin; clathrin, BAND 32.0 2.6E+02 0.009 25.4 10.0 18 49-66 19-36 (437)
316 2fe3_A Peroxide operon regulat 31.8 1.6E+02 0.0055 22.0 7.2 12 308-319 39-50 (145)
317 1k1a_A B-cell lymphoma 3-encod 31.7 2.1E+02 0.007 23.2 8.5 14 232-245 18-31 (241)
318 4ets_A Ferric uptake regulatio 31.6 1.2E+02 0.0042 23.3 6.3 44 296-339 38-83 (162)
319 1s6c_A KV4 potassium channel-i 31.3 1.8E+02 0.0061 22.4 11.9 65 76-140 36-101 (183)
320 1mzb_A Ferric uptake regulatio 30.9 1.6E+02 0.0055 21.7 6.8 32 306-337 34-65 (136)
321 4ets_A Ferric uptake regulatio 30.7 1.3E+02 0.0044 23.2 6.3 70 95-165 14-85 (162)
322 3l6a_A Eukaryotic translation 30.5 2.8E+02 0.0096 24.9 9.3 25 152-176 15-39 (364)
323 4a1g_A Mitotic checkpoint seri 30.4 1.8E+02 0.0062 22.2 11.8 48 131-178 82-130 (152)
324 1ug3_A EIF4GI, eukaryotic prot 30.2 1.3E+02 0.0046 26.6 7.1 23 190-212 16-38 (339)
325 2r9g_A AAA ATPase, central reg 30.1 2.2E+02 0.0074 22.9 9.7 35 269-304 28-62 (204)
326 3kea_A K1L; tropism, ANK repea 29.8 1.7E+02 0.0057 25.0 7.7 19 367-385 165-183 (285)
327 2xig_A Ferric uptake regulatio 29.1 1.9E+02 0.0064 21.9 8.1 59 245-304 17-75 (150)
328 2w57_A Ferric uptake regulatio 28.9 1.7E+02 0.006 22.0 6.7 34 306-339 33-66 (150)
329 1k1a_A B-cell lymphoma 3-encod 28.7 2.3E+02 0.0079 22.9 10.7 25 193-217 14-38 (241)
330 2czy_A Paired amphipathic heli 28.5 1.3E+02 0.0043 19.7 5.1 28 445-473 4-31 (77)
331 2fe3_A Peroxide operon regulat 27.8 1.9E+02 0.0065 21.6 7.5 58 246-304 13-70 (145)
332 2crb_A Nuclear receptor bindin 27.5 1.1E+02 0.0039 20.8 4.5 23 467-489 18-40 (97)
333 3eu9_A Huntingtin-interacting 26.9 2.5E+02 0.0084 22.6 9.5 7 162-168 19-25 (240)
334 3eyy_A Putative iron uptake re 26.9 1.4E+02 0.0049 22.3 5.8 29 308-336 35-63 (145)
335 3ltm_A Alpha-REP4; protein eng 26.9 2.4E+02 0.0081 22.4 20.3 17 219-235 94-110 (211)
336 1oai_A Nuclear RNA export fact 26.3 54 0.0019 20.2 2.7 21 164-184 35-55 (59)
337 2fu4_A Ferric uptake regulatio 26.2 1.4E+02 0.0047 19.4 6.4 59 420-479 8-67 (83)
338 2f6m_A Suppressor protein STP2 26.1 1.1E+02 0.0039 19.2 4.0 46 116-162 4-49 (65)
339 2w57_A Ferric uptake regulatio 26.0 2.1E+02 0.0073 21.5 6.8 61 315-376 7-68 (150)
340 2cwy_A Hypothetical protein TT 25.8 1.1E+02 0.0037 21.0 4.5 53 50-106 10-67 (94)
341 3eyy_A Putative iron uptake re 25.6 1.6E+02 0.0056 22.0 6.0 57 246-304 10-66 (145)
342 1oxz_A ADP-ribosylation factor 25.2 2.6E+02 0.0088 22.2 7.3 91 433-527 35-145 (186)
343 1ya0_A SMG-7 transcript varian 25.0 3.6E+02 0.012 25.5 9.3 73 47-124 158-230 (497)
344 1mzb_A Ferric uptake regulatio 24.8 2.1E+02 0.0072 21.1 7.2 60 316-376 9-69 (136)
345 1zl8_A LIN-7; heterodimer, alp 24.4 1.1E+02 0.0039 17.9 3.6 30 480-509 9-38 (53)
346 3eu9_A Huntingtin-interacting 24.0 1.6E+02 0.0055 23.7 6.4 13 196-208 17-29 (240)
347 2o03_A Probable zinc uptake re 23.7 1.5E+02 0.0052 21.6 5.4 46 119-164 15-60 (131)
348 3ltj_A Alpharep-4; protein eng 23.7 2.7E+02 0.0091 21.8 20.9 19 147-165 88-106 (201)
349 1wfd_A Hypothetical protein 15 23.6 1.8E+02 0.0061 19.8 6.8 14 476-489 27-40 (93)
350 3t8k_A Uncharacterized protein 23.3 2.7E+02 0.0092 21.7 8.1 23 231-253 46-68 (186)
351 3pvs_A Replication-associated 23.3 4.5E+02 0.015 24.3 12.4 23 303-325 268-290 (447)
352 2b7e_A PRE-mRNA processing pro 23.2 66 0.0023 19.8 2.6 29 237-265 3-31 (59)
353 3mwm_A ZUR, putative metal upt 23.1 1.4E+02 0.0049 22.1 5.2 47 119-165 18-64 (139)
354 3ljn_A Hypothetical protein; a 22.9 3.9E+02 0.013 23.5 9.8 81 368-454 178-266 (364)
355 3mv2_A Coatomer subunit alpha; 22.8 3.9E+02 0.013 23.4 10.4 17 370-386 124-140 (325)
356 2qx5_A Nucleoporin NIC96; mRNA 22.3 5.8E+02 0.02 25.2 20.0 16 440-455 549-564 (661)
357 1wty_A Hypothetical protein TT 22.0 2.2E+02 0.0076 20.4 6.0 18 466-483 55-72 (119)
358 3ubw_A 14-3-3E, 14-3-3 protein 21.9 3.6E+02 0.012 22.7 11.7 169 324-492 30-227 (261)
359 1n11_A Ankyrin; clathrin, BAND 21.7 2.5E+02 0.0085 25.6 7.7 292 191-516 17-328 (437)
360 3bge_A Predicted ATPase; struc 21.5 3.2E+02 0.011 21.9 8.4 32 269-300 21-52 (201)
361 3mwm_A ZUR, putative metal upt 21.1 1.4E+02 0.0048 22.2 4.7 33 305-337 28-60 (139)
362 2o03_A Probable zinc uptake re 20.7 2E+02 0.007 20.9 5.5 16 269-284 24-39 (131)
363 3bqo_A Telomeric repeat-bindin 20.5 2E+02 0.0067 23.1 5.3 26 82-107 121-146 (211)
364 2etb_A Transient receptor pote 20.3 2E+02 0.0069 23.7 6.3 26 298-323 7-32 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-40 Score=333.59 Aligned_cols=450 Identities=11% Similarity=-0.005 Sum_probs=365.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+.+|++++... |+..++..++..+.+.|++++|..+|+++... +.+..++..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 155 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT----GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC----CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHH
Confidence 34457889999999999999999999997554 46678889999999999999999999988653 347788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF---------------NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN 184 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (527)
++.+|.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.+.|+++.... +.+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 999999999999999999853221 223357889999999999999999999999998762 112
Q ss_pred hhhHHHH--------------------------------------HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 043284 185 VFTCNIL--------------------------------------IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTI 226 (527)
Q Consensus 185 ~~~~~~l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 226 (527)
...+..+ +..|.+.|++++|.++|+++.+. +++..+++.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 3333322 44556778888899999888775 4788888889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 043284 227 LGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKS 306 (527)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (527)
+..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999999999999888765 3377788888888899999999999998888653 44678888888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 307 GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++|.++|+++.+... .+..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988887543 357788888888999999999999999888775 346778888888899999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 043284 387 ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK----GVEPN--VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC 460 (527)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 460 (527)
....+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 6666678888999999999999999999999888765 66777 6788888899999999999999999888764
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 461 FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
+.+..++..++.+|.+.|++++|.+.++++.+..|.+...+..+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 336788888889999999999999999998888877766665544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-40 Score=329.94 Aligned_cols=457 Identities=9% Similarity=0.000 Sum_probs=386.5
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
...|.+..+...+..+ | .++...|..++..+.+.|++++|..+|+++.... |+...+..++.+|.+.|+++
T Consensus 64 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----S--LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHH
T ss_pred cccCccCCCCCccccc----h--HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHH
Confidence 3456666666666544 1 2577889999999999999999999999998643 36678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------CCCCChhhHHHHHHHHHc
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF--------------KVVPNVFTCNILIKALCK 197 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~ 197 (527)
+|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.... +.+++..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999998654 6889999999999999999999999999654331 223468899999999999
Q ss_pred CCChHHHHHHHHhcccCCCCCCHHHHHHH--------------------------------------HHHHHhcCChHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMVPNLVTHTTI--------------------------------------LGGYVWRGDIENA 239 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a 239 (527)
.|++++|+++|++|.+.+.. +...+..+ +..|.+.|++++|
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999999876522 33333333 4455678899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
.++|+++.+. +++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998876 5799999999999999999999999999999875 337889999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
. +.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++....+.+..+|+.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 4 4478889999999999999999999999998865 3478899999999999999999999999997777789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFPN--KTSFSLLIEG 473 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 473 (527)
++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 9999999999999999999999863 447889999999999999999999999999875 66787 7899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 474 LYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
|.+.|++++|.++++++.+..+.+...|..+...+. |++++|.+.++++++.+
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888888887543 99999999999999864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.7e-30 Score=241.24 Aligned_cols=382 Identities=13% Similarity=0.042 Sum_probs=232.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
++..+.+.|++++|++.++.+++..| .+...+..+...+...|++++|...++.+.+..|. +...|..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH
Confidence 45667777888888888877776665 35667777777777778888888777777765332 56677777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+++... .+.+...+..+...+...|++++|.+
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 777777777777777654 445566777777777777777777777777654 12234455556666666677777777
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
.|+++.+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|+..|++..+..
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 776666543 1235566666666666666666666666666553 2244555555555556666666666555555442
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 287 EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
+.+..++..+...+...|++++|.+.++++.+ .+ +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~-p~~~~~~~~l 277 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----------------------------------LQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------TC-SSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------hC-CCCHHHHHHH
Confidence 11344444455555555555555555555444 32 1234445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 446 (527)
...+.+.|++++|...|+++....+.+..+++.++..+...|++++|...++++.+. .+.+..++..+...+.+.|+++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555554444555566666666666666666666666666543 1223455666666666666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 043284 447 EGIRILEEMLDKGCFP-NKTSFSLLIEGLYESG 478 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 478 (527)
+|...|+++++. .| +...+..++..+...|
T Consensus 357 ~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 357 EALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 666666666653 23 3445555555555544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-29 Score=238.47 Aligned_cols=376 Identities=14% Similarity=0.043 Sum_probs=296.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
...+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|...++..... .+.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 445566677777777777766654 445556666666677777777777777766654 34456677777777777777
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|++.|+++.+.. +.+...|..+..++...|++++|.+.|+++++.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777776643 2245567777777778888888888887777764 22455666777777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+..++...|++++|...++++....+ .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 77663 235677888888888888888888888888876433 566778888888999999999999998888653 367
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 361 AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
.++..+...+...|++++|...|+++....+.+..+|..++.++.+.|++++|...++++.+. .+.+..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 888899999999999999999999997777778999999999999999999999999999986 3557889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
..|++++|...++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|.....|..+..
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 9999999999999999853 3457789999999999999999999999999988877777776655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.3e-29 Score=240.96 Aligned_cols=202 Identities=16% Similarity=0.158 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC---------hHHH
Q 043284 135 KTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD---------VEGA 204 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A 204 (527)
.+.+++.+.+....+. .++.+|.+|++.|++++|.++|++|... |+.||..+|++||.+|++.+. +++|
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444333322 3455555555555555555555555554 555555555555555554332 4566
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 285 GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
|+.||..+|+.++.+|++.|+.++|.++|++|.+.+..|+..||+.++..+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777666666554
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-27 Score=230.95 Aligned_cols=449 Identities=10% Similarity=0.006 Sum_probs=333.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+.+.|++++|+..|+++++..| +..++..++.++...|++++|...++++.+..|. +...+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 81 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHH
Confidence 356788899999999999999999988764 6889999999999999999999999999886543 6678899999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH---HHHHcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI---KALCKKD 199 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 199 (527)
++...|++++|+..|+++.+.+ +++......++..+........+.+.+..+... +..|+...+.... .......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999999876 445555555555444433333333333222111 0011111111000 0000111
Q ss_pred ChHHHHHHHHhcccC------CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCCHHh
Q 043284 200 DVEGAIRVLDEMPSM------GMVPNLVTHTTILGGYVW---RGDIENAKRVFGDILD-----RGW--------VPDATT 257 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~ 257 (527)
....+...+...... ..+.+...+......+.. .|++++|...++++.+ ... +.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111111 001224455555555554 8999999999999988 311 223567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
+..+..++...|++++|...++++.+.. |+...+..+...+...|++++|...++++...... +...+..+..++..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 7888899999999999999999998874 33888888999999999999999999999886433 56678888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
.|++++|...++++.+..+. +...+..+...+...|++++|...++.+....+.+...+..++..+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999987643 66788889999999999999999999996666678889999999999999999999999
Q ss_pred HHHHHcCCC-CC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043284 418 DDMVEKGVE-PN----VFTYNMLIQGFCK---IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 418 ~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
+++.+.... ++ ...+..+...+.. .|++++|...++++++.. +.+..++..++.++.+.|++++|.+.+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998865211 11 3378889999999 999999999999999853 33567888999999999999999999999
Q ss_pred HHhCCCCChhhHHHH
Q 043284 490 ATASGSVESDSWNFL 504 (527)
Q Consensus 490 ~~~~~~~~~~~~~~l 504 (527)
+.+..+.+...+..+
T Consensus 475 a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 475 SADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHCSSHHHHHHHH
T ss_pred HHHhccccHHHHHHH
Confidence 999988777666654
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.1e-29 Score=240.35 Aligned_cols=205 Identities=22% Similarity=0.244 Sum_probs=180.6
Q ss_pred HHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 043284 97 VESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR---------YD 166 (527)
Q Consensus 97 A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 166 (527)
+..+.+++.+. ..... ...+..++.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555543 22222 346788999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|.++|++|... |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999887 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG 303 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (527)
.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-26 Score=224.63 Aligned_cols=440 Identities=7% Similarity=-0.051 Sum_probs=328.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
....+...+..+.+.|++++|+..|+++.+.. |+...+..++.++...|++++|++.++++.+.+ +.+..++..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 34578888999999999999999999999864 378889999999999999999999999999876 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.++...|++++|...|+++.... +++......++..+........+.+.+..+...+..|+...+..-..........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999999988762 3344455555555544443444444333332222122221111111111111111
Q ss_pred HHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CCCHH
Q 043284 237 ENAKRVFGDILDRGW---------VPDATTYTVLMDGYIK---LGRLTDAVKVMDEMED-----NGV--------EPNEV 291 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~ 291 (527)
.....+...+..... +.+...+......+.. .|++++|+.+|+++.+ ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1224555555555554 8999999999999987 311 12356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC 371 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (527)
.+..+...+...|++++|...++++.+.... ...+..+..++...|++++|...++.+....+ .+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 7788889999999999999999999987544 77888899999999999999999999998753 46778889999999
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 043284 372 KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRI 451 (527)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 451 (527)
..|++++|...++++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999977777788999999999999999999999999998762 33567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHH
Q 043284 452 LEEMLDKGCF-PN----KTSFSLLIEGLYE---SGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDE 521 (527)
Q Consensus 452 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~ 521 (527)
++++.+.... ++ ...+..++.++.+ .|++++|.+.++++....+.+...|..+.... .|+.+.|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999864211 11 3378899999999 99999999999999998887777777666633 3999999999999
Q ss_pred HHhhc
Q 043284 522 LLVKN 526 (527)
Q Consensus 522 ~l~~~ 526 (527)
+++.+
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98864
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=6.5e-25 Score=217.58 Aligned_cols=444 Identities=10% Similarity=0.037 Sum_probs=335.6
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+.+++..| .++.++..++.++...|++++|++.|+++.+..|. +...+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP---NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHH
Confidence 34567889999999999999999999998877 47889999999999999999999999999886544 67788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK-VVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 199 (527)
..++...|++++|+..|+ ..... |+. ....+..+...+....|...++.+..... ..+........+..+....
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999996 33322 221 12234455556667888888888865411 1111122334455566677
Q ss_pred ChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-------HhHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVW--------RGDIENAKRVFGDILDRGWVPDA-------TTYTVLMD 263 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~ 263 (527)
+.+.+...+...... .+... ....+...+.. .|++++|..+++.+++.... +. .++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 777776666555443 22222 22333322222 25789999999999877422 32 34667778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhH
Q 043284 264 GYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVED 343 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (527)
.+...|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.+.... +..++..+..++...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 888999999999999999987 456888899999999999999999999999887543 67788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 344 ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
|...++++.+..+. +...+..+...+...|++++|...++++....+.+...+..++..+...|++++|...++++.+.
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999987533 56788889999999999999999999997667778889999999999999999999999998764
Q ss_pred CC-----CCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 424 GV-----EPNVFTYNMLIQGFCKI----------GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 424 ~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
.. ......+......+... |++++|...|+++++.. +.+...+..++.++.+.|++++|.+.++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 21 11122244555677777 99999999999999853 3356789999999999999999999999
Q ss_pred HHHhCCCCChhhHH
Q 043284 489 MATASGSVESDSWN 502 (527)
Q Consensus 489 ~~~~~~~~~~~~~~ 502 (527)
++.+..+.+.....
T Consensus 487 ~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 487 DSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHC--CHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99998876555443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.5e-24 Score=214.95 Aligned_cols=429 Identities=10% Similarity=0.006 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+.+.|++++|+..|+++.+..|. +...+..+..++...|++++|++.++++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 457888999999999999999999999987554 77889999999999999999999999999886 667889999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC------CCCCHHHHHHHHHHHH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG------MVPNLVTHTTILGGYV 231 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~ 231 (527)
++...|++++|...|+.+.. .|+. ....+..+...+....|...++.+.... ..|+.. .+..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 99999999999999974432 2222 2223445555666788999999887641 223333 334455
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHH
Q 043284 232 WRGDIENAKRVFGDILDRGWVPDAT-TYTVLMDGYI--------KLGRLTDAVKVMDEMEDNGVEPN-------EVTYGV 295 (527)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~ 295 (527)
...+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHH
Confidence 566666655544333222 12211 2222222222 225899999999999876322 2 235667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 043284 296 MIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375 (527)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (527)
+...+...|++++|...+++..+.. |+...+..+..++...|+++.|...++++.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 7788889999999999999999864 447788889999999999999999999999876 3477889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
+++|...|+++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999976667788899999999999999999999999999873 345678899999999999999999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHH
Q 043284 456 LDKG-----CFPNKTSFSLLIEGLYES----------GNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGA 518 (527)
Q Consensus 456 ~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 518 (527)
++.. .......+...+.++.+. |++++|...++++.+..+.+...|..+..... |+.+.|.+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 8532 111223345566778888 99999999999999998877777777666433 999999999
Q ss_pred HHHHHhhc
Q 043284 519 LDELLVKN 526 (527)
Q Consensus 519 ~~~~l~~~ 526 (527)
++++++.+
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2e-24 Score=209.10 Aligned_cols=303 Identities=17% Similarity=0.095 Sum_probs=195.2
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.++..+..++..+.+.|++++|+..|+.+++..| .+..++..++.++...|++++|...|+++.+..|. +...+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHH
Confidence 3455677888888889999999999988877666 46778888888888889999999999888876443 567788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSV---RSLNTLL------------NALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.++.++...|++++|++.|+++.+.+ +.+. ..+..++ ..+...|++++|...|+++... .+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 88888888899999999998888764 3333 4554443 3366667777777777766654 233
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHH--
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVL-- 261 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 261 (527)
+...+..++.+|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 55566666667777777777777776665543 2345666666666667777777777776666542 2233333333
Q ss_pred ----------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 262 ----------MDGYIKLGRLTDAVKVMDEMEDNGVEPN-----EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA 326 (527)
Q Consensus 262 ----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (527)
...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 45555556666666666555543 222 2244555555555555555555555555432 12344
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
.+..+..+|...|++++|...++++.+.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.3e-23 Score=203.23 Aligned_cols=328 Identities=13% Similarity=0.035 Sum_probs=179.4
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHH
Q 043284 59 LALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFL 138 (527)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 138 (527)
.+...+..++..+| .+...+..++..+.+.|++++|+.+|+++.+..|. +...+..++.++...|++++|+..|+
T Consensus 10 ~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQSM---ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -------------C---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccccH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444544333 35566666777777777777777777766654332 45566666677777777777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-h---hhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 139 RIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-V---FTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
++.+.+ +.+..++..++.++...|++++|...|+++... .|+ . ..+..++..+..
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~----------------- 143 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEM----------------- 143 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHH-----------------
Confidence 766654 445666666666777777777777777666643 232 2 344444333110
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043284 215 GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG 294 (527)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (527)
..+..+...+...|++++|+..|+++.+.. +.+...+..++.+|.+.|++++|+.+|+++.+.. +.+..++.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 011222334555666666666666665543 2355556666666666666666666666665542 23455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHHHHhcCCHhHHHHHHHHHHhCCCCCC---
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKV------------IDLLCEEGKVEDACELWKRLLRKNCMPD--- 359 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 359 (527)
.+...|...|++++|...|+++...... +...+..+ +..+...|++++|...++.+.+..+. +
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~ 293 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEY 293 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHH
Confidence 6666666666666666666666554221 22222222 45555666666666666666554321 2
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043284 360 -NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 360 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (527)
...+..+..++.+.|++++|...++++....+.+...|..++.+|...|++++|...++++.+
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 224455555566666666666666665443444555666666666666666666666666654
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.8e-19 Score=174.43 Aligned_cols=350 Identities=12% Similarity=0.042 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 115 NLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 115 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
..+..+...|.. .+++++|+..|++..+. .+..++..+...|.. .+++++|..+|++.... .+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 333444444444 44444444444444442 233344444444444 44445555544444332 1333
Q ss_pred hHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhH
Q 043284 187 TCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW----RGDIENAKRVFGDILDRGWVPDATTY 258 (527)
Q Consensus 187 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (527)
.+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444444444 445555555555544433 33444444444444 445555555555555443 34444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 259 TVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 259 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445555544 455555555555555432 33444444444443 455555555555554432 2333444
Q ss_pred HHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 331 VIDLLCE----EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE-----GKIWEAKKLFDEFERGSIPSLLTYNTLI 401 (527)
Q Consensus 331 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (527)
+...+.. .++.++|...+++..+.+ +...+..+...|... +++++|...|++.... .+...+..+.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 335 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLG 335 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 4444444 455555555555555443 333444455555544 5566666666555332 2334455555
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 402 AGMCESA---ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 402 ~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
..|...| ++++|+++|++..+.| +...+..+...|.. .+++++|..+|+++.+.| +...+..|+..|
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555434 5556666666655542 44555555555555 556666666666666543 344555556556
Q ss_pred Hh----cCChhHHHHHHHHHHhCC
Q 043284 475 YE----SGNEGEVGKVVSMATASG 494 (527)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~ 494 (527)
.+ .++.++|.+.|+++.+.+
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55 566666666666665555
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.4e-20 Score=176.03 Aligned_cols=323 Identities=15% Similarity=0.066 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.+++..| .+..++..++..+...|++++|...|+++.+..|. +...+..+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 80 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHH
Confidence 44556666666666666666666665555 24556666666666666666666666666654332 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQ---RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
+...|++++|+..++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 666666666666666666543 1 12223322211100 0012223445555566
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|++.++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666555443 1244555555556666666666666666655543 33455555566666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
..+... .+...+..+... . ...........+...|++++|...++++.+..+. +.
T Consensus 214 a~~~~~-~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 214 CLKLDQ-DHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHCT-TCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHhhCc-cchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 554421 112211111000 0 0001112234445555555555555555544322 22
Q ss_pred ----hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 361 ----AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 361 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
..+..+..++...|++++|...+++.....+.+...+..++..+...|++++|...|+++.+.
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 112334455555566666666665554444445555556666666666666666666665543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.7e-20 Score=175.42 Aligned_cols=327 Identities=13% Similarity=0.039 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILG 228 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 228 (527)
+..+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345556666666666777777666666654 22345566666666666666666666666665543 124455666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWV--PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKS 306 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (527)
++...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 12223322211000 00112224555666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 307 GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++|.+.++++.+... .+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666665432 245556666666667777777777777666654 335566666667777777777777777776
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHH
Q 043284 387 ERGSIPSLLTYN------------TLIAGMCESAELTEAGRLWDDMVEKGVEPN-V----FTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 387 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 449 (527)
....+.+...+. .++..+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 444444444433 3366788999999999999999876 333 2 23455778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
..++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|.+...+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999853 3367889999999999999999999999999988776666665544
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.3e-19 Score=176.83 Aligned_cols=421 Identities=13% Similarity=0.038 Sum_probs=217.5
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
|+.+++.+| .+..+|..++.. .+.|++++|+.+|+++.+..|. +...|...+..+.+.|++++|.++|++++..
T Consensus 2 le~al~~~P---~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEENP---YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHCT---TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhCC---CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 344444444 355666666663 5566666777777666665333 5556666666666666777777777666654
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHhhhcCCCCC-ChhhHHHHHHHHHc---------CCChHHHHHHH
Q 043284 144 NVQRSVRSLNTLLNAL-VQNKRYDLVHL----MFKNSRHKFKVVP-NVFTCNILIKALCK---------KDDVEGAIRVL 208 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~ 208 (527)
. |+...|...+... ...|+.+.|.+ +|+......|..| +...|...+..... .|+++.|..+|
T Consensus 76 ~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 V--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 3 4555555555322 23455554443 5555544433332 34455555554433 46666777777
Q ss_pred HhcccCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HHCC---CCCC--------HHhH
Q 043284 209 DEMPSMGMVPNLVTHTTILGGY-------------VWRGDIENAKRVFGDI------LDRG---WVPD--------ATTY 258 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~ 258 (527)
++.++.........|....... .+.+++..|..++... .+.. ++|+ ...|
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 7666521000012222211110 0223445555544442 1111 1222 1233
Q ss_pred HHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHH
Q 043284 259 TVLMDGYIKL----GRL----TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK-------GKKSG-------EARNLLDDM 316 (527)
Q Consensus 259 ~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 316 (527)
...+...... ++. +++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 3333222221 122 25555666665542 2245566666555553 46654 666666666
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHH
Q 043284 317 LQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPD-NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395 (527)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (527)
.+.-.+.+...+..++..+.+.|++++|..+|+++.+..+. + ...|...+..+.+.|++++|..+|++.....+.+..
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 54212224555566666666666666666666666664321 2 235555666666666666666666666443333333
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHH
Q 043284 396 TYNTLIAG-MCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPN--KTSFSLLI 471 (527)
Q Consensus 396 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~ 471 (527)
.|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33322222 224566666666666666541 22355666666666666666666666666665421 121 23555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043284 472 EGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
......|+.+.+.++.+++.+..|
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 556666666666666666655543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.5e-18 Score=169.16 Aligned_cols=352 Identities=10% Similarity=-0.012 Sum_probs=290.1
Q ss_pred CHHHHHHHHHHHHh----cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCC
Q 043284 77 NYDTYHSIIHKLAR----ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRS 148 (527)
Q Consensus 77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 148 (527)
++.++..+...+.. .+++++|..+|+++.+. + +...+..+...|.. .+++++|++.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 67788888888887 78999999999988874 3 56677788888888 889999999999988754 5
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCH
Q 043284 149 VRSLNTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNL 220 (527)
Q Consensus 149 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~ 220 (527)
...+..+...|.. .+++++|..+|++.... .+...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 6777778888887 78999999999988765 256677778888877 788999999999988864 67
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 221 VTHTTILGGYVW----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 221 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
..+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 788888888887 889999999999998875 56777788888876 789999999999988764 5667
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHhhH
Q 043284 293 YGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE-----GKVEDACELWKRLLRKNCMPDNAIS 363 (527)
Q Consensus 293 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (527)
+..+...|.. .+++++|.+.|++..+.+ +...+..+...+... +++++|...+++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 7777777777 889999999999988764 456667778888877 89999999999998876 45667
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043284 364 STIIHWLCKEG---KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLI 436 (527)
Q Consensus 364 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 436 (527)
..+...|...| ++++|...|++.... .+...+..+...|.. .+++++|...|++..+.| +...+..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 77888887766 788999999998543 467888889999988 899999999999998875 567788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 043284 437 QGFCK----IGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 437 ~~~~~----~g~~~~A~~~~~~~~~~~ 459 (527)
..|.. .+++++|..+|+++.+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88887 899999999999999876
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=4.2e-19 Score=174.96 Aligned_cols=414 Identities=13% Similarity=0.085 Sum_probs=302.1
Q ss_pred HHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 101 LTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
|++..+..|. +...|..++.. .+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 3444443343 77889988884 78999999999999999874 677889999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHH-HcCCChHHHHH----HHHhcccC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHH
Q 043284 181 VVPNVFTCNILIKAL-CKKDDVEGAIR----VLDEMPSM-GMVP-NLVTHTTILGGYVW---------RGDIENAKRVFG 244 (527)
Q Consensus 181 ~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~ 244 (527)
.|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+
T Consensus 76 -~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 46877887777533 35677777665 67665542 4333 56677777776554 688999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHH
Q 043284 245 DILDRGWVPDATTYTVLMDGY-------------IKLGRLTDAVKVMDEME------DNG---VEPN--------EVTYG 294 (527)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~ 294 (527)
+.++.........|....... ...++++.|..++.+.. +.. ++|+ ...|.
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 999841111123443332211 12356777877776632 221 2333 24555
Q ss_pred HHHHHHHcc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCHh-------HHHHHHHHHH
Q 043284 295 VMIEAFCKG----KKS----GEARNLLDDMLQRKYVPSSALCCKVIDLLCE-------EGKVE-------DACELWKRLL 352 (527)
Q Consensus 295 ~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~ 352 (527)
..+...... ++. ..+..+|++.+...+ .+...|...+..+.+ .|+++ +|..++++..
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 555433322 232 377888999888633 367778777777775 68887 8999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL-LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VF 430 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~ 430 (527)
+.-.+.+...+..++..+.+.|++++|..+|+++....+.+. ..|..++..+.+.|++++|..+|++..+. .|+ ..
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~ 391 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHH 391 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTH
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchH
Confidence 732344688888999999999999999999999976555554 58999999999999999999999999875 333 33
Q ss_pred HHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChh----hHHHHH
Q 043284 431 TYNMLIQG-FCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD----SWNFLL 505 (527)
Q Consensus 431 ~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ll 505 (527)
.|...+.. +...|+.++|..+|+++++.. +.+...+..++..+.+.|+.++|+.+|+++....+.++. .|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33333222 336899999999999999753 235788999999999999999999999999998754444 787766
Q ss_pred H--HHHhchhhhHHHHHHHHhh
Q 043284 506 T--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 506 ~--~~~~~~~~a~~~~~~~l~~ 525 (527)
. ..+|+.+.+.++.+++++.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6 3349999999999988764
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.6e-20 Score=169.34 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=219.1
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+.++..+..++..+...|++++|+.+|+.+++..|. +...+..++..+...|++++|..+++++.+..|. +...+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHH
Confidence 345677888999999999999999999999887774 4457777788888999999999999999886443 56788
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 118 ITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 118 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
..+...+...| ++++|++.|++..+.. +.+..++..+...+...|++++|...|++.... .+.+...+..+...+.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHH
Confidence 88888999999 8999999999998875 456778888899999999999999999988876 2334566777888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHhHHHHHHHHHhc
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG--------WVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 268 (527)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 8888888888888887764 2356778888888888888888888888877641 122345777777777788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 88888888887777653 23556677777777777777777777777666432 2445555555555
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-19 Score=164.97 Aligned_cols=284 Identities=9% Similarity=-0.062 Sum_probs=151.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++... .+.+...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 3344555555555566666666666555543 334444445555555556666666666555543 2223445555555
Q ss_pred HHHcCC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 194 ALCKKD-DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 194 ~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 5666666666555443 1234455556666666666666666666665543 223444555556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--------CCCHHhHHHHHHHHHhcCCHhHH
Q 043284 273 DAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY--------VPSSALCCKVIDLLCEEGKVEDA 344 (527)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 344 (527)
+|...++++.+.. +.+...+..+...+...|++++|...+++..+... ......+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 22445555555666666666666666655544210 11233444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 345 CELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGM 404 (527)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (527)
...++++.+..+ .+...+..+..++...|++++|...|+++....+.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 555555554432 23444455555555555555555555555444444555555555544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=6e-20 Score=172.48 Aligned_cols=292 Identities=14% Similarity=0.069 Sum_probs=205.9
Q ss_pred HcCCChHHHHH-HHHhcccCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 043284 196 CKKDDVEGAIR-VLDEMPSMGMV---PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 196 ~~~~~~~~A~~-~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (527)
...|++++|++ .|++....... .+...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777877 77766544211 134556777778888888888888888888764 34667777888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH--------------HHHHHHh
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCK--------------VIDLLCE 337 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~ 337 (527)
++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.............. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877764 33667777888888888888888888888877543321111111 1233337
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMP-DNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
.|++++|...++++.+..+.. +..++..+...+...|++++|...|+++....+.+...|..++..+...|++++|...
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888888888765332 5677888888888888888888888888665666788888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhHHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP----------NKTSFSLLIEGLYESGNEGEVGKV 486 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 486 (527)
++++.+.. +.+..++..+..++.+.|++++|...|+++++..... ...++..++.++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88888752 3356778888888888888888888888887532110 156788888888888888888887
Q ss_pred HHHH
Q 043284 487 VSMA 490 (527)
Q Consensus 487 ~~~~ 490 (527)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=9.8e-20 Score=171.04 Aligned_cols=307 Identities=10% Similarity=-0.039 Sum_probs=158.6
Q ss_pred HHhcCChhHHHH-HHHHhcccCCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC
Q 043284 51 IFRQQNLDLALQ-IFHYAGKFHPNFSH-NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG 128 (527)
Q Consensus 51 ~~~~~~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 128 (527)
+...|++++|+. .|+.+++..|..+. +...+..++..+...|++++|...|+++.+..|. +...+..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCc
Confidence 344577777777 77777665554321 2445677777777777888888877777775433 5566777777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043284 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+++..... .+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~-------~~----- 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEG-------AG----- 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHH-------hh-----
Confidence 7777877777777765 45667777777777777777777777777765421 112111111000 00
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043284 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE 287 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (527)
.. .+ ...+..+. .+...|++++|...++++++..... +..++..+..++...|++++|+..|+++.+.. +
T Consensus 178 --~~----~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 178 --GA----GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp ---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred --hh----cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 00 00000111 1224455555555555555442111 24445555555555555555555555554432 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---------
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP--------- 358 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 358 (527)
.+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...++++.+..+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 2344555555555555555555555555554321 234445555555555555555555555554432111
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 043284 359 -DNAISSTIIHWLCKEGKIWEAKKLFD 384 (527)
Q Consensus 359 -~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (527)
...++..+..++...|++++|..++.
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14455555666666666666655554
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=6.2e-17 Score=165.34 Aligned_cols=387 Identities=11% Similarity=0.028 Sum_probs=295.4
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+|.-....+..|...|.+.+|++++++++.....+..+...-+.++....+. +..+..++.+++... + ...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----d---~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----D---APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----c---HHH
Confidence 3344456888899999999999999999743322445556666677777776 567777777766532 1 345
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+...|.+++|..+|++.. ......+.+ +...+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Confidence 7888899999999999999963 122222223 227789999999998663 5778999999999999
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH--
Confidence 999999999774 378889999999999999999999999888764 3433444589999999998854433
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 043284 280 EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPD 359 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (527)
.+ .++...|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++. .+
T Consensus 1190 --I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1190 --IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 22 456777888999999999999999999985 37888999999999999999999987 26
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043284 360 NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF 439 (527)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 439 (527)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|..+...+
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 688899999999999999998877653 2466778899999999999999999998887442 22344566666666
Q ss_pred Hc--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 440 CK--IGNAKEGIRILEEMLDKGCFP------NKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 440 ~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
++ -++..++.++|..-.. ++| +...|..+...|.+.|+++.|...+
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 54 3455556666554332 333 4566888999999999999998433
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.2e-19 Score=170.12 Aligned_cols=236 Identities=11% Similarity=-0.000 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+..|+.+++..| .+..++..++..+...|++++|+..|+++.+..|. +...+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHH
Confidence 445566777777777777777777777776665 35667777777777777777777777777765332 4566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH----------HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSL----------NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
++.++...|++++|++.|+++.+.. +.+...+ ..+...+...|++++|...|+++.......++..++.
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 7777777777777777777776643 1111112 2234555555556666666655555421111344555
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG 269 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (527)
.+...+...|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++++.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 55555555555555555555555432 1234455555555555555555555555555442 223445555555555555
Q ss_pred ChhHHHHHHHHHHH
Q 043284 270 RLTDAVKVMDEMED 283 (527)
Q Consensus 270 ~~~~a~~~~~~~~~ 283 (527)
++++|...|+++.+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-18 Score=167.06 Aligned_cols=386 Identities=11% Similarity=-0.052 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccC------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CC
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFH------PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PE 109 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~ 109 (527)
...|+.++.++...|++++|++.|+++++.. ...+....+|..++.+|...|++++|...++++.+. .+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4457889999999999999999998886531 112235668889999999999999999998887653 11
Q ss_pred C-CcChhhHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 110 I-KCGENLFITVIRNYGLA--GRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL---VQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 110 ~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
. .....++.....++... +++++|++.|++..+.. |.++..+..+..++ ...++.++|++.+++.... .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 11344565555555543 56889999999988875 45566666555543 4457778888888887765 233
Q ss_pred ChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 184 NVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 184 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...++++++.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45555555544443 467788888888877654 3366778888888888999999999988888764 33566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.+..+|...+.... ... . ..........+..+.|...+++..+.+.. +...+..+..++...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 66665543211100 000 0 00000001122345666666666654322 3445556666777777
Q ss_pred CHhHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNA--ISSTIIH-WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
++++|+..|+++......+... .+..+.. .....|++++|+..|++.....+.+.... +....+.++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~ 418 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKI 418 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHH
Confidence 7777777777766654332211 1112221 22355677777777776644333322111 112333444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+++..+.. +.+..+|..+...|...|++++|++.|+++++.+
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55544432 3345677777777777777777777777777643
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=4.4e-19 Score=162.54 Aligned_cols=381 Identities=12% Similarity=0.056 Sum_probs=171.1
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
.+.+.|++++|.++++++ +.+.+|..++.++.+.|++++|++.|.+.. +...|..++..+...|+
T Consensus 12 ll~~~~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHhCCC
Confidence 344678899999999988 233599999999999999999999997642 45578888999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLD 209 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 209 (527)
+++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|.
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999988777764 4557778889999999999999887773 3667799999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043284 210 EMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN 289 (527)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 289 (527)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 76 47889999999999999999999987 27889999999999999999996655442 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCCC------CHh
Q 043284 290 EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE--GKVEDACELWKRLLRKNCMP------DNA 361 (527)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~ 361 (527)
......++..|.+.|.+++|..+++..+... +.....|+.+..++++- ++..+.++.|.. +.++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445568888999999999999999988765 44567777777777664 333444444432 112222 355
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERG------------SIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 429 (527)
.|..++..|...++++.|....-.-... ...+...|-..+..|... .+..--.++.-+ ...+.+
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l-~~~ld~-- 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVL-SPRLDH-- 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHH-GGGCCH--
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHH-HhccCc--
Confidence 6778888888888888876644332111 223455555555555421 111111222222 111221
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+..+..+.+.|...-+..++......+ +..+=.++-..|...++++.-+.-++
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 233444556666666666665555432 33444455566677777766555544
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=3.9e-19 Score=166.74 Aligned_cols=268 Identities=12% Similarity=0.016 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIE 298 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (527)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777664 3366777777777777777777777777777653 235677777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC---------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHH
Q 043284 299 AFCKGKKSGEARNLLDDMLQRKYV---------PSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIH 368 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 368 (527)
+|...|++++|...++++.+.... .....+..+..++...|++++|...++++.+..+. .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777778888887777777664211 01122334567788888999999999988887533 16778888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
.+...|++++|...|+++....+.+..+|..++.+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999866677788899999999999999999999999988762 33477888888999999999999
Q ss_pred HHHHHHHHHCCCC---C--------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043284 449 IRILEEMLDKGCF---P--------NKTSFSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 449 ~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
...|+++++.... + +...+..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998853200 0 246788888899999999888877665
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=9.9e-16 Score=156.64 Aligned_cols=320 Identities=13% Similarity=0.122 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
......++..+...|.+++|..+|++.. ....+...+ +...+++++|.++.+++. ++.+|..+
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VL---ie~i~nldrAiE~Aervn-------~p~vWsqL 1111 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD-------VNTSAVQVL---IEHIGNLDRAYEFAERCN-------EPAVWSQL 1111 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHH---HHHHhhHHHHHHHHHhcC-------CHHHHHHH
Confidence 3446678999999999999999999882 122233333 236788999999998762 46789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|....+. .+++...+.++.+|.+.++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcC
Confidence 99999999999999999663 56778888999999999999999999887765 2444445568889999998
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++..... + .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88644443 2 256677888999999999999999999885 3788899999999999999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....+ +-..
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~ 1314 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHM 1314 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHh
Confidence 63 6677887777887788877777765532 2245556677777788888888888887776554 3344
Q ss_pred hhHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHH
Q 043284 361 AISSTIIHWLCKE--GKIWEAKKLFDEFERGSI-----PSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 361 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
..|..+...|++. ++..++.+.|..-....+ .+...|..++..|.+.|+++.|.
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5555555555543 233333333332211111 24556777777777777777776
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.4e-18 Score=160.24 Aligned_cols=235 Identities=9% Similarity=-0.038 Sum_probs=145.6
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.+...+..++..+...|++++|+.+|+.+++..| .+..++..++..+...|++++|...++++.+..|. +...+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHH
Confidence 3556778899999999999999999999988776 37788999999999999999999999999886443 667888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL--------------LN-ALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.+...+...|++++|++.++++.+.. +.+...+..+ .. .+...|++++|...++++... .+.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 170 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPN 170 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCC
Confidence 88999999999999999999998764 3333333333 11 234444555555555555443 122
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34444445555555555555555555544432 1233444444444555555555555555444432 223444444444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043284 264 GYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~ 283 (527)
++...|++++|.+.++++.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 44444555555544444443
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.2e-16 Score=153.46 Aligned_cols=384 Identities=10% Similarity=-0.010 Sum_probs=222.4
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKF--------NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF--- 179 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 179 (527)
......|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++.....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567778888888888888888888776542 112345678888888999999999988888765321
Q ss_pred C--CC-CChhhHHHHHHHHHc--CCChHHHHHHHHhcccCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCC
Q 043284 180 K--VV-PNVFTCNILIKALCK--KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGG---YVWRGDIENAKRVFGDILDRGW 251 (527)
Q Consensus 180 ~--~~-~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 251 (527)
. .. ....++..+..++.. .+++++|++.|++..+... -+...+..+..+ +...++.++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 123455555555544 4568899999998877542 234445444444 345677788888888888764
Q ss_pred CCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 043284 252 VPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327 (527)
Q Consensus 252 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (527)
+.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3355666666555544 457788888888887764 346677888888888899999999999888876433 4555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
+..+..+|...+.... ... . ..........+.++.|...+++.....+.+...+..+...|...
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 6666555533211100 000 0 00000111122356666777766555555666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVF--TYNMLIQ-GFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
|++++|+..|++..+....+... .+..+.. .....|++++|+..|+++++. .|+..... +..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 77777777777777653222211 1222222 234567777777777777763 34432221 1223445
Q ss_pred HHHHHHHhCCCCChhhHHHHHHH--HHhchhhhHHHHHHHHhh
Q 043284 485 KVVSMATASGSVESDSWNFLLTR--IVSDLDSGAGALDELLVK 525 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~a~~~~~~~l~~ 525 (527)
+++++.....|.+..+|..+... ..|++++|.+.++++++.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55666666666666666655542 237777777777777764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=4.5e-18 Score=155.92 Aligned_cols=283 Identities=13% Similarity=0.109 Sum_probs=136.5
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 89 ARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV 168 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (527)
.+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 366889999999999832 348999999999999999999999653 5667899999999999999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 169 HLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 9988777664 4567889999999999999999988885 267789999999999999999999999976
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 043284 249 RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC 328 (527)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (527)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 47899999999999999999999998 27899999999999999999996654432 2334445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC------CCHHHHHHH
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERG--SI------PSLLTYNTL 400 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~------~~~~~~~~l 400 (527)
..++..|.+.|.+++|..+++...... +-....|..+..+|++- .+++..+.++..... .+ .+...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 568899999999999999999998776 55677788887777654 455555555544211 11 246679999
Q ss_pred HHHHHhcCCHHHHHHH
Q 043284 401 IAGMCESAELTEAGRL 416 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~ 416 (527)
...|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 9999999999988763
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=5.6e-18 Score=156.10 Aligned_cols=233 Identities=8% Similarity=-0.007 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|..+|+++.+..|. +...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 346777888888889999999999888875443 66778888888888999999999998888875 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH--------------HH-HHHcCCChHHHHHHHHhcccCCCCCCHHH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL--------------IK-ALCKKDDVEGAIRVLDEMPSMGMVPNLVT 222 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 222 (527)
.+...|++++|...++++.... +.+...+..+ .. .+...|++++|.+.++++.+... .+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH
Confidence 8888899999998888887651 2223333332 11 23444455555555555444321 13444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (527)
+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4444555555555555555555544432 2234444444444555555555555554444432 1133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQ 318 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~ 318 (527)
.|++++|.+.+++...
T Consensus 253 ~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=5e-17 Score=146.12 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRIL 452 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~ 452 (527)
|++++|..+|+++....+.+...++.++.++...|++++|...|+++.+.. +.+..++..++..+...|+.++ +.+++
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444444444433333344444444444444444444444444444331 1123334444444444444432 23444
Q ss_pred HHHHH
Q 043284 453 EEMLD 457 (527)
Q Consensus 453 ~~~~~ 457 (527)
+++++
T Consensus 259 ~~~~~ 263 (291)
T 3mkr_A 259 SQLKD 263 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.2e-16 Score=143.53 Aligned_cols=260 Identities=12% Similarity=0.099 Sum_probs=184.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 230 YVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEA 309 (527)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (527)
....|++..|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456777777776665443321111234445566777777777777655431 244566667777777777777777
Q ss_pred HHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 310 RNLLDDMLQRKYVP-SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777655333 344555666777778888888877776 34667777788888888888888888888854
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043284 389 GSIPSLLTY--NTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS 466 (527)
Q Consensus 389 ~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 466 (527)
..+.+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 443332211 12233444568999999999999987 35578889999999999999999999999999864 236778
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhCCCCChhhH
Q 043284 467 FSLLIEGLYESGNEGE-VGKVVSMATASGSVESDSW 501 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~ 501 (527)
+..++..+...|+.++ +.++++++.+..|.++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999976 5789999998887665443
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=5.7e-16 Score=148.60 Aligned_cols=348 Identities=12% Similarity=0.010 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP---ELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+...+.+.|++++|.++|+++.+. + +...+..+...|...|+. ++|++.|++..+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 34566677778888888888887763 2 334455566666667777 7888888777753 55556666664
Q ss_pred HHhcC-----CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH---HHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 159 LVQNK-----RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE---GAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 159 ~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
+...+ ++++|..+|++.... + +...+..|...|...+... ++.+.+......| +...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 55544 667788888777654 2 2336666777776655433 3444444444433 344555666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----
Q 043284 231 VWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG---RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG---- 303 (527)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 303 (527)
...+.++++......+.+.-...++..+..+..+|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 666655444443222222111123336666777777777 7777777777777765 33455445566666544
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----C
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDL-L--CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG-----K 375 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~ 375 (527)
+++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +......+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 57777777777765 22 34444455554 3 34677777777777777665 4555556666665 44 6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 043284 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKE 447 (527)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 447 (527)
+++|...|++.. +.+...+..+...|.. ..++++|...|++..+.| +......|...|.. ..+..+
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 777777777665 4456666666666655 236777777777766654 22334444444442 346667
Q ss_pred HHHHHHHHHHCC
Q 043284 448 GIRILEEMLDKG 459 (527)
Q Consensus 448 A~~~~~~~~~~~ 459 (527)
|..+|+...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 777777766655
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.3e-16 Score=136.59 Aligned_cols=224 Identities=9% Similarity=0.036 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHhHHHH
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV--PS----SALCCKV 331 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 331 (527)
+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444433 33444444444444444444444444444332111 01 2444455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
..++...|++++|...++++.+.. |+ ...+...|++++|...++.+....+.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 555555555555555555555532 22 123445566666666666665545555666677777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+|...++++.+.. +.+..++..+...+...|++++|+..++++++.. +.+...+..++.++.+.|++++|.+.++++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777776652 2345667777777777777777777777777643 2245667777777777777777777777776
Q ss_pred hCC
Q 043284 492 ASG 494 (527)
Q Consensus 492 ~~~ 494 (527)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 655
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=5.2e-16 Score=148.89 Aligned_cols=375 Identities=9% Similarity=-0.007 Sum_probs=230.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAF---DAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..++..+.+.|++++|.+.|+++.+. + ++.++..+...+...|+. ++|..+|+++.+. +...+..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg 76 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC---------------------------------CHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHH
Confidence 56788888888999999998888542 3 445777777777777877 8888888888753 444566666
Q ss_pred HHHHhcC-----ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 122 RNYGLAG-----RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL---VHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 122 ~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...| ++++|+..|++..+.|. + .++..+...|...+..++ +.+.+...... .+...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~ 149 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVL 149 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 6454544 67888888888888652 2 366677777777665443 34444444332 24556777777
Q ss_pred HHHcCCChHHHHHH----HHhcccCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043284 194 ALCKKDDVEGAIRV----LDEMPSMGMVPNLVTHTTILGGYVWRG---DIENAKRVFGDILDRGWVPDATTYTVLMDGYI 266 (527)
Q Consensus 194 ~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (527)
.|...+.++++.+. +..... .+...+..+...|...| +.++|++.|++..+.| +++...+..+..+|.
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 78777755544444 443333 23347777888888888 8888888888888887 345555566777775
Q ss_pred hc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 267 KL----GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEA-F--CKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 267 ~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.. +++++|+.+|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 54 68888888888877 33 55666666666 4 45788888998888888765 5666666777776 44
Q ss_pred -----CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----
Q 043284 340 -----KVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE---- 406 (527)
Q Consensus 340 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 406 (527)
++++|...|++.. .| ++.....+...|.. ..++++|...|++..... +......+...|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCC
Confidence 8888888888877 33 56666677766665 338888888888885432 34455666666654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
..++++|..+|+...+.|. ++.......+......++..+|..+.++..
T Consensus 371 ~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4578888888888877653 222222222222222334455555555544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.7e-16 Score=136.37 Aligned_cols=197 Identities=14% Similarity=0.052 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
+++..+..++..+.+.|++++|+..|+++++.+| .+..++..++..+.+.|++++|+..|+++.+..|. +...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHH
Confidence 3445566677777777777777777777766665 36667777777777777777777777777765443 455666
Q ss_pred HHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh
Q 043284 119 TVIRNYGLA-----------GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT 187 (527)
Q Consensus 119 ~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (527)
.+..++... |++++|+..+++..+.. |.+..++..+..++...|++++|+..|++..... .+...
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 153 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHH
Confidence 666666666 66666666666655543 3345555555555555555555555555555541 34455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555554432 12344445555555555555555555443
No 39
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=1.7e-13 Score=135.68 Aligned_cols=433 Identities=10% Similarity=-0.010 Sum_probs=269.3
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC---hhH
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR---PEL 132 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 132 (527)
...+.+..|+..+..+| .|...|..++..+.+.+.++.+..+|+++....|. ....|...+..-.+.|+ ++.
T Consensus 47 ~~~d~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHH
Confidence 34566667788877777 58999999999999999999999999999987444 77788888888888888 999
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhhcCCC-CCC-hhhHHHHHHHHHc----
Q 043284 133 AVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRY--------DLVHLMFKNSRHKFKV-VPN-VFTCNILIKALCK---- 197 (527)
Q Consensus 133 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~---- 197 (527)
+.++|++.+... .+|++..|...+....+.++. +.+.++|+......|. .++ ...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998864 137888888888776665543 4455888887776666 554 4677777765442
Q ss_pred -----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHC--CC----C-
Q 043284 198 -----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW-------------RGDIENAKRVFGDILDR--GW----V- 252 (527)
Q Consensus 198 -----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~- 252 (527)
.++++.+..+|+.++......-..+|......-.. ..+++.|...+.++... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 34567888999988863211112333222111101 11233334444332210 11 0
Q ss_pred ----------C--C------HHhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 043284 253 ----------P--D------ATTYTVLMDGYIKLG-------RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG 307 (527)
Q Consensus 253 ----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (527)
| + ...|...+..--..+ ..+.+..+|+++...- +-....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 123444443322222 1233455677766542 335667777777777777777
Q ss_pred HHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---------CC------------CHhhHHH
Q 043284 308 EAR-NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC---------MP------------DNAISST 365 (527)
Q Consensus 308 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ 365 (527)
+|. ++|+...... +.+...+...+......|+++.|.++|+.+..... .| ...+|..
T Consensus 361 ~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 775 7777776642 33455556666677777778888877777765310 12 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFERG-SIPSLLTYNTLIAGMCES-AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG 443 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (527)
.+....+.|+.+.|..+|.++... .......|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 666666677777788877777443 222334444333333333 3477777777777765 3334555666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 444 NAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.+.|..+|++++.....+ ....|..++..-.+.|+.+.+.++.+++.+..|.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7778888887777653211 2245666666667777777777777777766643
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=5.5e-16 Score=133.10 Aligned_cols=198 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
++...+..++..+...|++++|+..|+++.+..|. +...+..+..++.+.|++++|+..+++..+.+ |.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45567777788888888888888888888776443 66677777788888888888888888887765 4566777777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 156 LNALVQN-----------KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 156 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
..++... |++++|+..|++.... .+.+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 7777776 6666666666555543 12234455555555555555555555555555544 3455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (527)
.+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+..|++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555555542 224444555555555555555555555443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3.5e-15 Score=133.42 Aligned_cols=237 Identities=8% Similarity=-0.016 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC-cChhhHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK-CGENLFIT 119 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~ 119 (527)
+..+...+..+...|++++|+..|+.+++..|. +...+..++..+...|++++|+..++++.+.++.+ .....|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 345566777777788888888888877766653 44467777777777788888888877777632111 11233667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+...+...|++++|++.|++..+.. +.+..++..+...+...|++++|...|++.... .+.+...|..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHH
Confidence 7777777777777777777777654 445566777777777777777777777776654 2234455555552333344
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHhHHHHHHHHHhcC
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD---IENAKRVFGDILDRG-WVPD------ATTYTVLMDGYIKLG 269 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g 269 (527)
++++|++.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 6777777776666543 1234555556666666565 556666666555431 0112 134555556666666
Q ss_pred ChhHHHHHHHHHHHC
Q 043284 270 RLTDAVKVMDEMEDN 284 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~ 284 (527)
++++|.+.|+++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666666554
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.1e-15 Score=131.69 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE--PN----EVTYG 294 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 294 (527)
..+..+...+...|++++|...|+++++.. .+...+..+..++...|++++|+..++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555666666666666666666666554 45556666666666666666666666665543211 11 35566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG 374 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (527)
.+...+...|++++|...+++..... |+ ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666667777777777777666643 22 234555667777777777777654 235566777777888888
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
++++|...++++....+.+...+..++.++...|++++|...++++.+.. +.+...|..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888866566677888888888888888888888888887762 33467788888888888888888888888
Q ss_pred HHHC
Q 043284 455 MLDK 458 (527)
Q Consensus 455 ~~~~ 458 (527)
+++.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=6.2e-16 Score=135.72 Aligned_cols=204 Identities=9% Similarity=0.012 Sum_probs=141.1
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhh
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 116 (527)
+...+..+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 93 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATA 93 (243)
T ss_dssp -----------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHH
Confidence 334567788899999999999999999999987665 46788999999999999999999999998876443 6678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 8888888999999999999999988875 566778888888888888888888888887765 2335666777777777
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
..|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777766543 234566666777777777777777777777665
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=6.5e-15 Score=131.65 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=165.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHH
Q 043284 257 TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP--SSALCCKVIDL 334 (527)
Q Consensus 257 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 334 (527)
.+......+...|++++|+..|+++.+... .+...+..+..++...|++++|.+.+++..+....+ ....+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455566666666666666666665531 234456666666666666666666666666632111 12235666777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
+...|++++|...++++.+..+ .+...+..+...|...|++++|...|++.....+.+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776543 355677777888888888888888888886666667777777773333445888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKG-CFPN------KTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~ 484 (527)
..|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...+..++..|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888762 2235667777777777777 777888888877531 1133 246777888888889999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHH
Q 043284 485 KVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+.++++.+..|.+...+..+..
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHhcCccHHHHHHHhhh
Confidence 9999988888777766665544
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=3.4e-15 Score=138.65 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARA-FDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
+..++.++...|++++|++.|+++++.+|. +..+|..+..++...|+ +++|+..|+++.+..|. +..+|..+..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g~ 174 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 456677777778888888888888777763 66777777777777775 88888888877776443 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc-CCCh
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK-KDDV 201 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 201 (527)
++...|++++|+..|+++++.+ +.+..+|..+..++...|++++|+..|+++... .+.+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 7777788888888888877765 566777777777777778888888888777765 23356677777777777 5554
Q ss_pred HHH-----HHHHHhcccCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----
Q 043284 202 EGA-----IRVLDEMPSMGMVPNLVTHTTILGGYVWRG--DIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG----- 269 (527)
Q Consensus 202 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 269 (527)
++| ++.|++.+.... -+...|..+..++...| ++++|++.+..+ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 466666665432 24566766666666666 567777777666 33 2335566666777776653
Q ss_pred ----ChhHHHHHHHHH-HHC
Q 043284 270 ----RLTDAVKVMDEM-EDN 284 (527)
Q Consensus 270 ----~~~~a~~~~~~~-~~~ 284 (527)
.+++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 246777777776 443
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=5.3e-13 Score=132.24 Aligned_cols=424 Identities=10% Similarity=0.025 Sum_probs=292.2
Q ss_pred HHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 043284 96 AVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR---YDLVHLMF 172 (527)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 172 (527)
+-+..|++.....|. +...|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+..+|
T Consensus 50 d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344444555444444 88899999999999999999999999999874 7788899999999888898 99999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHcCCCh--------HHHHHHHHhccc-CCC-CC-CHHHHHHHHHHHH---------h
Q 043284 173 KNSRHKFKVVPNVFTCNILIKALCKKDDV--------EGAIRVLDEMPS-MGM-VP-NLVTHTTILGGYV---------W 232 (527)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~p-~~~~~~~l~~~~~---------~ 232 (527)
++.......+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99998632248888998888766555543 334577776553 355 44 3567777776543 2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-------------cCChhHHHHHHHHHHH--CCCC----------
Q 043284 233 RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK-------------LGRLTDAVKVMDEMED--NGVE---------- 287 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~--~~~~---------- 287 (527)
.++++.+..+|+.++......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 34577889999998864211112334322221111 1234445555554322 1111
Q ss_pred -----C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH-H
Q 043284 288 -----P-----N---EVTYGVMIEAFCKGK-------KSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDAC-E 346 (527)
Q Consensus 288 -----~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 346 (527)
| + ...|...+..--..+ ..+.+..+|++.+... +.....|...+..+...|+.+.|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 134555554433322 1234567788887763 337778888888888899999996 9
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------CC------------CHHHHHHHHHHH
Q 043284 347 LWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGS----------IP------------SLLTYNTLIAGM 404 (527)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~------------~~~~~~~l~~~~ 404 (527)
++++..... +.+...+...+......|+++.|..+|+++.... .| ...+|...+...
T Consensus 366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 999998753 4566777788888899999999999999984321 13 234688888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI-GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEV 483 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 483 (527)
.+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. .+-+...+...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHH
Confidence 88899999999999998751112334444333333344 4589999999999986 344566677888888889999999
Q ss_pred HHHHHHHHhCCCC---ChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 484 GKVVSMATASGSV---ESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 484 ~~~~~~~~~~~~~---~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
+.+|+++....++ ....|...+. ..+|+.+.+.++.+++++.
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999887763 3457887777 3459999999999998865
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=2.6e-15 Score=132.59 Aligned_cols=201 Identities=12% Similarity=-0.053 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+..+..++..+...|++++|+..|+.+++..| .+..++..++..+...|++++|.+.++++.+..+. +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHH
Confidence 44566777778888888888888888876655 35667777777888888888888888877765332 55667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
...+...|++++|++.++++.+.+..| +...+..+...+...|++++|...|++.... .+.+...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcC
Confidence 777777777777777777776622222 3556666677777777777777777776654 2234555666666666666
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666665543 234555556666666666666666666666554
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.3e-13 Score=123.13 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=140.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 255 ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
...+..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444555555555555555555555542 133444455555555 555555555555555543 4444555
Q ss_pred HHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCE----EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..... +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 5555555 666666666666665553 45555566666666 666666666666663322 4555666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 403 GMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 403 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|+++.+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6666 777777777777777653 45666677777777 788888888888877754 356667777777
Q ss_pred Hh----cCChhHHHHHHHHHHhCCCCC
Q 043284 475 YE----SGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.+ .|++++|.+.++++.+.++++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77 788888888888877776543
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.6e-14 Score=134.18 Aligned_cols=247 Identities=8% Similarity=0.027 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGR-LTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
..|..+...+...|++++|++.++++++.. +-+...|..+..++...|+ +++|+..|+++.+... -+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 344555555555555555555555555543 2244555555555555554 5555555555554421 134455555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 379 (527)
+...|++++|+..|+++++.+.. +...|..+..++...|++++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~------------------------------------~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK------------------------------------NYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT------------------------------------CHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc------------------------------------CHHHHHHHHHHHHHcCChHHH
Confidence 55555555555555555443322 344444444444445555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCE-SAELTEA-----GRLWDDMVEKGVEPNVFTYNMLIQGFCKIG--NAKEGIRI 451 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~ 451 (527)
+..|+++....+.+...|+.+..++.. .|..++| +..+++.++.. +-+...|..+...+...| ++++|++.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 555555444444445555555555554 3332444 35555555431 113445555555555555 45666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HhCCCCChhhHHHHHHHH
Q 043284 452 LEEMLDKGCFPNKTSFSLLIEGLYESG---------NEGEVGKVVSMA-TASGSVESDSWNFLLTRI 508 (527)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~ll~~~ 508 (527)
+.++ +. -+.+...+..++.+|.+.| ..++|.++++++ .+.++.....|..+...+
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 6555 22 1223445555666665543 136666666666 555555555555555533
No 50
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=161.57 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHK--FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTI 226 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 226 (527)
..+|+++|++|++.|++++|.++|+.|... .|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 446777777777777777777777665421 256677777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 227 LGGYVWRGDI-ENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 227 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777776663 5666777777777777777777766654433
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1e-15 Score=137.04 Aligned_cols=250 Identities=12% Similarity=-0.061 Sum_probs=167.2
Q ss_pred HhcCChhHHHHHHHHhcccCCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFS-HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP 130 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 130 (527)
...|++++|+..|+.+++..+... .+..++..++..+...|++++|...|+++.+..|. +...+..++..+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCH
Confidence 345888999999998876533211 24667888888888889999999999888876443 567788888888888888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh
Q 043284 131 ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
++|++.|+++.+.. +.+..++..+..++...|++++|...|+++... .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888888765 456778888888888888888888888888765 34443444444455666788888888876
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043284 211 MPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV---PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE 287 (527)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (527)
..... +++...+ .++..+...++.++|...+....+.... .+...+..+..++...|++++|...|+++.+..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 65543 2233333 3556666777777777777776654211 014566667777777777777777777776652
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLL 313 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (527)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 222233445556666655544
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.5e-13 Score=121.36 Aligned_cols=223 Identities=9% Similarity=0.002 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
++.++..+...+...|++++|...|+++.+. + +...+..+...+.. .|++++|++.|++..+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3444555555555555555555555555541 1 23344445555555 555555555555555432 34444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 153 NTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 153 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
..+...+.. .+++++|...|++.... .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 455555555 55555555555554433 134444445555554 555555555555554433 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043284 225 TILGGYVW----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVM 296 (527)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (527)
.+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 44444444 455555555555555442 33444444555555 555555555555554432 23344444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHc
Q 043284 297 IEAFCK----GKKSGEARNLLDDMLQR 319 (527)
Q Consensus 297 ~~~~~~----~~~~~~a~~~~~~~~~~ 319 (527)
...|.. .+++++|.+.|++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 444444 45555555555554443
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=158.05 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=94.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFE----RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNM 434 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 434 (527)
-..+|++++.+|++.|++++|..+|+.|. .+..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44578888888888888888888887762 45678888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043284 435 LIQGFCKIGNA-KEGIRILEEMLDKGCFPNKTSFSLLIEGLYES 477 (527)
Q Consensus 435 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 477 (527)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88888888774 67788888888888888888888776555443
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1e-13 Score=122.23 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=109.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|.+.++++.+... .+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 33333444444444444444444443321 1333444444444555555555555555444331 234445555555555
Q ss_pred cCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 373 EGKIWEAKKLFDEFER--GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.|++++|...++++.. ..+.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655543 333345556666666666666666666666666542 2235556666666666667777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
.++++.+.. +.+...+..++..+.+.|++++|.++++++.+..+.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 666666532 23445566666666666777777777776666654443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=4.9e-14 Score=121.86 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.|+++.+..|. +...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 334444555555555555555555554443221 33444445555555555555555555554433 233444444555
Q ss_pred HHHhc-CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 158 ALVQN-KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 158 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.+... |++++|...++++......+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 55555555555544310111123344444444455555555555554444332 11234444444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555544443211233444444444444555555555554444
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=7.7e-15 Score=131.35 Aligned_cols=223 Identities=12% Similarity=-0.016 Sum_probs=137.4
Q ss_pred hcCCchHHHHHHHHhhhCCCC--CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 90 RARAFDAVESLLTELKQNPEI--KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
..|++++|+..|+++.+..+. +.+..++..++..+...|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877764221 1234566777777777888888888888777765 4567777777777777788888
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 168 VHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
|...|++.... .+.+...+..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87777777765 23345667777777777777777777777776643 343333344444455677777777776665
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 248 DRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP---NEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
... +++...+ .++..+...++.++|...+++..+..... +...+..+...+...|++++|...|++....
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 2233333 24555556666666666666655431100 1344555555555555555555555555543
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.8e-14 Score=125.07 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043284 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWL 370 (527)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (527)
..|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3444455555555566666665555555322 234555555666666666666666666665543 22555666666677
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
...|++++|...++++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|+.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777655455566677777777777777777777777777652 2356667777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
.++++.+.. +.+..++..++.++.+.|++++|.+.++++.+..+.+...+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 888777653 2346677777888888888888888888887777665555544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=2e-13 Score=117.91 Aligned_cols=202 Identities=10% Similarity=0.016 Sum_probs=97.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|...++++.... +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 33333344444444444444444433221 123333444444444444444444444444432 1233444444555555
Q ss_pred c-CCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 373 E-GKIWEAKKLFDEFER--GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 373 ~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
. |++++|...++++.. ..+.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 5 555555555555533 222234455555555556666666666665555441 223455555555666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
..++++.+.....+...+..+...+...|+.++|..+++.+....+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 666666553211244445555555556666666666666655444433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=5.3e-15 Score=140.56 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CC-CCcChhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN---PE-IKCGENL 116 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~ 116 (527)
..+...+..+...|++++|+..|+++++..|..... ..++..++..+...|++++|...++++... .+ .+....+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 345678888999999999999999998876642111 357888888999999999999999887653 11 1123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQ-RS----VRSLNTLLNALVQNKR--------------------YDLVHLM 171 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 171 (527)
+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 778888888999999999998887654210 11 3467777788888888 7777777
Q ss_pred HHHhhhcC---CCC-CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 043284 172 FKNSRHKF---KVV-PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPN----LVTHTTILGGYVWRGDIENAKRV 242 (527)
Q Consensus 172 ~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 242 (527)
+++..... +.. ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 76654321 101 1133556666666667777777766666543210 011 12455566666666666666666
Q ss_pred HHHHHHCCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHH
Q 043284 243 FGDILDRGWV-PD----ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNL 312 (527)
Q Consensus 243 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 312 (527)
+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6655432100 01 334555555666666666666666555432100 01 23444455555555555555555
Q ss_pred HHHHH
Q 043284 313 LDDML 317 (527)
Q Consensus 313 ~~~~~ 317 (527)
+++..
T Consensus 330 ~~~al 334 (406)
T 3sf4_A 330 AEKHL 334 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.4e-14 Score=138.06 Aligned_cols=276 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHhH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL----VTHTTILGGYVWRGDIENAKRVFGDILDR----G-WVPDATTY 258 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 258 (527)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|+..+++.++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555555666666655555544211 11 24445555555555555555555554432 0 01122334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHh
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK-YVPSSALCCKVIDLLCE 337 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 337 (527)
..+..+|...|++++|...++++.+... ..+ ......++..+..++..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554432100 000 00112234444555555
Q ss_pred cCC-----------------HhHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC--CC
Q 043284 338 EGK-----------------VEDACELWKRLLRK----N-CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI--PS 393 (527)
Q Consensus 338 ~~~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 393 (527)
.|+ +++|...+++..+. + .......+..+...+...|++++|...+++.....+ .+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555554331 1 111233566677777788888888888877622111 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 043284 394 ----LLTYNTLIAGMCESAELTEAGRLWDDMVEKGV--E---PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GC 460 (527)
Q Consensus 394 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 460 (527)
...+..++..|...|++++|...+++..+... . ....++..+...+...|++++|...++++++. +-
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23678888899999999999999988775411 0 11456788888999999999999999988752 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 461 FP-NKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
.+ ...++..++.+|.+.|++++|.+.++++.+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 134677889999999999999999999877654
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.6e-14 Score=137.17 Aligned_cols=242 Identities=12% Similarity=0.013 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCC
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NV-QRS 148 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 148 (527)
.....+...+..+...|++++|...|+++.+..+..+. ..++..+...+...|++++|+..+++.... +. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566777888888899999999999988876443221 246777888888899999999988876543 11 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCC--------------------hHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDD--------------------VEGA 204 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 204 (527)
..++..+...+...|++++|...+++........++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456777778888888888888888776643111111 3356667777777777 6666
Q ss_pred HHHHHhcccC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCChhHH
Q 043284 205 IRVLDEMPSM----GMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV-PD----ATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 205 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a 274 (527)
++.+++.... +..+ ...++..+...+...|++++|...+++.++.... ++ ..++..+..++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666654331 1001 1234555555666666666666666655432100 01 12445555555555666666
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 275 VKVMDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 275 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
...+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555554432100 00 2334444444455555555555544443
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.8e-14 Score=135.89 Aligned_cols=240 Identities=11% Similarity=0.017 Sum_probs=151.7
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcChhhH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCGENLF 117 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 117 (527)
.+..++..+...|++++|+..|+++++..|+.... ..++..++..+...|++++|...++++.+. ...+.....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 35567888899999999999999998876641110 147888899999999999999999988764 1112244567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFN-----VQRSVRSLNTLLNALVQNKR-----------------YDLVHLMFKNS 175 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 175 (527)
..+...+...|++++|+..+++..+.. .+....++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 788888999999999999998876641 12234567777888888888 77777777665
Q ss_pred hhcC---CC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 176 RHKF---KV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 176 ~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
.... +. ......+..+...+...|++++|+..+++..+.... ++ ...+..+..++...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4321 00 112235556666666677777776666665442100 01 124555555666666666666666555
Q ss_pred HHCCCC-----CCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 247 LDRGWV-----PDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 247 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
++.... ....++..+..++...|++++|...+++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432100 012344455555555555555555555544
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=3.7e-14 Score=130.87 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcChhhHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCGENLFI 118 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ 118 (527)
+...+..+...|++++|+..|+++++..|+.... ...+..++..+...|++++|.+.++++.+. ...+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3456777888899999999999888776541111 356778888888889999988888876653 11112244667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNV-QRS----VRSLNTLLNALVQNKR--------------------YDLVHLMFK 173 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~ 173 (527)
.+...+...|++++|++.+++..+... ..+ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 777888888888888888887765311 011 2356667777777777 666666665
Q ss_pred HhhhcC---C-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 043284 174 NSRHKF---K-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPN----LVTHTTILGGYVWRGDIENAKRVFG 244 (527)
Q Consensus 174 ~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (527)
+..... + .......+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543210 0 001123445555555555666666655555443200 001 1134444444555555555555554
Q ss_pred HHH
Q 043284 245 DIL 247 (527)
Q Consensus 245 ~~~ 247 (527)
+..
T Consensus 248 ~al 250 (338)
T 3ro2_A 248 KTL 250 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=7.1e-13 Score=120.50 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=141.4
Q ss_pred hHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh-------cCCc-------hHHHHHHHHhhh-CCCCCcChhhHHHHHH
Q 043284 58 DLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR-------ARAF-------DAVESLLTELKQ-NPEIKCGENLFITVIR 122 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~l~~ 122 (527)
++|+.+|+++++..| .++..|..++..+.. .|++ ++|+.+|+++.+ ..|. +...|..++.
T Consensus 33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHH
Confidence 688899999988776 477888888887763 4776 788888888887 3333 5567778888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH-cCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC-KKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 200 (527)
.+...|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++.... .+++...|...+.... ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 8888888888888888888753 22333 6777777777778888888888777654 1223333433322211 2566
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHhcCChhHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG-WVP--DATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
+++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++.+... .+| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665542 1245556666666666666666666666666642 232 344555566666666666666666
Q ss_pred HHHHHHC
Q 043284 278 MDEMEDN 284 (527)
Q Consensus 278 ~~~~~~~ 284 (527)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=4.8e-14 Score=130.07 Aligned_cols=239 Identities=12% Similarity=0.018 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NV-QRSVRS 151 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 151 (527)
..+...+..+...|++++|...|+++.+..+..+. ...+..+...+...|++++|++.+++..+. +. +....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 35566677788889999999999888876443211 356777888888889999998888876543 11 122456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCC--------------------hHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDD--------------------VEGAIRV 207 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 207 (527)
+..+...+...|++++|...+++........++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777778888888888888888776543111112 3366667777777777 6777666
Q ss_pred HHhcccC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHhHHHHHHHHHhcCChhHHHHH
Q 043284 208 LDEMPSM----GMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW-----VPDATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 208 ~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
+++.... +.. .....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654331 100 1123455555666666666666666665543210 00122445555555666666666666
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 278 MDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 278 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6554432100 01 2334444445555555555555554443
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.7e-13 Score=129.07 Aligned_cols=297 Identities=12% Similarity=0.029 Sum_probs=160.9
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHH--HHHHHHHHH--HhcCCchHHH-----------HHHHHhhhCCCCCcC---
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYD--TYHSIIHKL--ARARAFDAVE-----------SLLTELKQNPEIKCG--- 113 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~~~~~~~~--- 113 (527)
.+++++++|..+++.+.+..+....+.. .|..++..- ...++++.+. +.++.+... +.+.+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~-~~~~~~~l 101 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK-QARLTGLL 101 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH-THHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc-CCCchhHH
Confidence 4688999999998887654444333433 333333221 1223344444 556655442 11101
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---
Q 043284 114 -ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN--- 184 (527)
Q Consensus 114 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 184 (527)
...+......+...|++++|++.+++..+. +-++ ...++..+...+...|++++|...+++........++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011222556667778888888888887654 1011 2356777777788888888888777776543221111
Q ss_pred --hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC
Q 043284 185 --VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTTILGGYVWRGDIENAKRVFGDILD-----RGWV 252 (527)
Q Consensus 185 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 252 (527)
..+++.+...|...|++++|++.|++..+.... ++ ..++..+..+|...|++++|++.+++.++ ...+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 345666677777777777777777666542100 11 13566666677777777777777766665 2212
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCC-C
Q 043284 253 PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG----VEPNEVTYGVMIEAFCKGKK---SGEARNLLDDMLQRKYVP-S 324 (527)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~ 324 (527)
....++..+..++.+.|++++|...+++..+.. -+.....+..+...+...|+ .++|+.++++. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 234556666667777777777777766655321 01111223444555555555 44444444433 1111 1
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
...+..+...+...|++++|...+++..
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234445555555555555555555544
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=5.3e-12 Score=114.70 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA-ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC 405 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (527)
.+..++..+...|++++|..+|+++.+..+. +.. ++..++..+.+.|++++|..+|++.....+.+...|...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 111 34444444444444444444444443333333333332222211
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChh
Q 043284 406 -ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-CFP--NKTSFSLLIEGLYESGNEG 481 (527)
Q Consensus 406 -~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~ 481 (527)
..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++++... +.| ....|..++..+.+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1355555555555544431 1234444444555555555555555555555431 222 2334444444555555555
Q ss_pred HHHHHHHHHHhCCC
Q 043284 482 EVGKVVSMATASGS 495 (527)
Q Consensus 482 ~A~~~~~~~~~~~~ 495 (527)
+|..+++++.+..|
T Consensus 259 ~a~~~~~~a~~~~p 272 (308)
T 2ond_A 259 SILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 55555555544443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.9e-13 Score=112.16 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..|..++..+...|++++|++.|+++++.+|. +..++..++.++...|++++|...++.+....+. +...+..+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 80 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHH
Confidence 34566677777777777777777777666663 5666777777777777777777777766654333 445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
..+...++++.|.+.+.+..... +.+..++..+..++.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 66666777777777776666654 445666666666666677777777766666654 223455666666666666666
Q ss_pred HHHHHHHHhcccC
Q 043284 202 EGAIRVLDEMPSM 214 (527)
Q Consensus 202 ~~A~~~~~~~~~~ 214 (527)
++|++.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666553
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=7.2e-13 Score=124.72 Aligned_cols=229 Identities=9% Similarity=-0.063 Sum_probs=142.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-----CHHhHH
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDN----GVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV-P-----SSALCC 329 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 329 (527)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666542 1011 1245556666666666666666666665542100 1 123455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-----CC-CCCHHHHH
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCM-P----DNAISSTIIHWLCKEGKIWEAKKLFDEFER-----GS-IPSLLTYN 398 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 398 (527)
.+..++...|++++|...++++.+.... . ...++..+...|...|++++|...+++... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777777777777777766643110 1 123566677778888888888888877733 33 34566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043284 399 TLIAGMCESAELTEAGRLWDDMVEK----GVEPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPN-KTSFSLL 470 (527)
Q Consensus 399 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 470 (527)
.++..|...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888877653 111112235566777778888 66666666655 22232 3456678
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043284 471 IEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+..|...|++++|.+.++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888765
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=9.4e-13 Score=109.80 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
++..|..++..+...|++++|++.|+++.+..|. +..++..+..++...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4556777777777777777777777777665443 55566667777777777777777777666654 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
..+...++++.+...+++.... .+.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 6666667777777666666554 22345556666666666666666666666665543 22455566666666666666
Q ss_pred HHHHHHHHHHHHC
Q 043284 237 ENAKRVFGDILDR 249 (527)
Q Consensus 237 ~~a~~~~~~~~~~ 249 (527)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=130.17 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------C
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN------P 108 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 108 (527)
....+..++..+...|++++|+..|+.+++.. +..+....++..++..+...|++++|...++++.+. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567889999999999999999999997631 112235667888999999999999999999988764 1
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF------NV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF-- 179 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 179 (527)
..+.....+..+...+...|++++|++.++++.+. +. +....++..+...+...|++++|...|++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234557778888889999999999999888764 11 2234567777788888888888888888776531
Q ss_pred ----CCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 180 ----KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 180 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+....++..+...+...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112244566777777777888887777777664
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=4.2e-13 Score=129.51 Aligned_cols=217 Identities=8% Similarity=-0.045 Sum_probs=176.9
Q ss_pred CCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 92 RAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP-ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170 (527)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (527)
+.++++...++......+ .+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|..
T Consensus 82 ~~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346778888887776533 3677888888899999999 99999999988875 5668888899999999999999999
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHcC---------CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc--------
Q 043284 171 MFKNSRHKFKVVPNVFTCNILIKALCKK---------DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR-------- 233 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 233 (527)
.|++.... .|+...+..+...+... |++++|++.|++..+... .+...|..+..+|...
T Consensus 159 ~~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcccc
Confidence 99998865 56778888888888888 999999999998887642 3577888888888888
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 234 GDIENAKRVFGDILDRGWV--PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|++++|++.|++.++.... .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999886421 478888899999999999999999999988764 2356778888888888889888887
Q ss_pred HHHHH
Q 043284 312 LLDDM 316 (527)
Q Consensus 312 ~~~~~ 316 (527)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66554
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=8.5e-13 Score=127.40 Aligned_cols=217 Identities=14% Similarity=0.016 Sum_probs=176.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY-DLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
+++++++..++...... +.+...+..+...+...|++ ++|+..|++..+. .+.+...|..+..+|...|++++|++
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677778888776653 45788888888999999999 9999999998876 23357788899999999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--------C
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR---------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL--------G 269 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 269 (527)
.|++..+.. |+...+..+..++... |++++|++.++++++.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999988864 6778888888888888 99999999999988875 34678888888888888 8
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 270 RLTDAVKVMDEMEDNGVE--PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
++++|+..|++..+.... .+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998886320 37788888999999999999999999998886533 566777888888888888888876
Q ss_pred HHHH
Q 043284 348 WKRL 351 (527)
Q Consensus 348 ~~~~ 351 (527)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6544
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.6e-13 Score=123.75 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQN------PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF----- 143 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 143 (527)
+.+..++..++..+...|++++|..+++++.+. ...+.....+..+...+...|++++|+..+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678888999999999999999999988873 012234567788888999999999999999888764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----C-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC-
Q 043284 144 -N-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF-----K-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM- 214 (527)
Q Consensus 144 -~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 214 (527)
+ .+....++..+...+...|++++|...|++..... + .+.....+..+...+...|++++|+++|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 12235677788888888999999988888876542 1 1223456777778888888888888888777653
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 215 -----GMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 215 -----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
+..| ...++..+..++...|++++|.+.++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234566777777788888888888777765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1.1e-11 Score=116.41 Aligned_cols=303 Identities=11% Similarity=0.016 Sum_probs=167.3
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHhcccCCCCCCCHH--HHHHHHHHH--HhcCCchHHH---------HHHHHhhhCCC
Q 043284 45 KRLVSMI--FRQQNLDLALQIFHYAGKFHPNFSHNYD--TYHSIIHKL--ARARAFDAVE---------SLLTELKQNPE 109 (527)
Q Consensus 45 ~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~---------~~~~~~~~~~~ 109 (527)
..+-..| ..++++++|..+++.+.+.......+.. .|..++..- .-.+.+..+. +.++.+... +
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 92 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP-Q 92 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG-G
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc-C
Confidence 3344444 6789999999999887544333333433 334433321 1123333333 555555432 1
Q ss_pred CCcC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 110 IKCG----ENLFITVIRNYGLAGRPELAVKTFLRIEKFNV-QR----SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 110 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
.+.+ ...+......+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++......
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1101 11233445566778888888888888765411 11 234667777788888888888877777654322
Q ss_pred CCC-----ChhhHHHHHHHHHcCCChHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 043284 181 VVP-----NVFTCNILIKALCKKDDVEGAIRVLDEMPSM----GMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILD-- 248 (527)
Q Consensus 181 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 248 (527)
..+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|++.+++.++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 111 1345667777777777777777777766542 111 1123566667777777777777777777665
Q ss_pred ---CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHccCC---HHHHHHHHHHHHH
Q 043284 249 ---RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE---P-NEVTYGVMIEAFCKGKK---SGEARNLLDDMLQ 318 (527)
Q Consensus 249 ---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 318 (527)
.. +....++..+..++.+.|++++|...+++..+.... + ....+..+...+...++ ..+|+..+++
T Consensus 253 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~--- 328 (378)
T 3q15_A 253 REKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK--- 328 (378)
T ss_dssp HHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---
T ss_pred HhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---
Confidence 32 223556666677777777777777777776653211 1 12233444445555555 4445544443
Q ss_pred cCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 319 RKYVPS-SALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 319 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
.+..++ ...+..+...|...|++++|...+++..
T Consensus 329 ~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 329 KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111111 2233445555666666666666665554
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=8.2e-13 Score=132.51 Aligned_cols=166 Identities=10% Similarity=-0.003 Sum_probs=148.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++.++.++|++++|++.|+++++.+|+ +..++..++.++.+.|++++|+..|+++.+..|. +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 4567889999999999999999999999998884 7889999999999999999999999999987554 6788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+..++...|++++|++.|++..+.+ +.+..++..+..++...|++++|+..|++..+. .+.+...+..+..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 9999999999999999999999886 567889999999999999999999999999876 2335778999999999999
Q ss_pred ChHHHHHHHHhccc
Q 043284 200 DVEGAIRVLDEMPS 213 (527)
Q Consensus 200 ~~~~A~~~~~~~~~ 213 (527)
++++|.+.++++.+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.4e-11 Score=115.56 Aligned_cols=228 Identities=8% Similarity=-0.078 Sum_probs=141.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CC-CHHhHHH
Q 043284 262 MDGYIKLGRLTDAVKVMDEMEDNGV-EPN----EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY-----VP-SSALCCK 330 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 330 (527)
...+...|++++|+..|+++.+... .++ ..++..+...|...|+++.|...+++..+... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566666666666666654210 011 34555566666667777777666666554210 00 1334556
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCHHHHHHH
Q 043284 331 VIDLLCEEGKVEDACELWKRLLRK----NC-MPDNAISSTIIHWLCKEGKIWEAKKLFDEFER-----GSIPSLLTYNTL 400 (527)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l 400 (527)
+..++...|++++|.+.+++..+. +. .....++..+..+|...|++++|...+++... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 667777777777777777766552 11 11224556677778888888888888887744 444456777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGV---EPN-VFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPN-KTSFSLLIE 472 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 472 (527)
+..+...|++++|...+++..+... .+. ...+..+...+...|+ +.+|+..+++. +..|+ ...+..++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 8888888888888888888776421 111 2345555556667777 66666666652 22222 234667888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 473 GLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~ 492 (527)
.|...|++++|.+.++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888887653
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=5e-11 Score=103.08 Aligned_cols=205 Identities=9% Similarity=-0.049 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.++. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3557777777888888888888888888887655456666666778888888888888888888876533 566777778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPSL-------LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN---VFTYNMLIQ 437 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 437 (527)
.++...|++++|...+++.....+.+. ..|..+...+...|++++|+..|++..+. .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 888888888888888888765555566 45777777777888888888888887754 454 345666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 438 GFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
++... +...++++...+ ..+...+.... ....|.+++|...++++.+..|.+......
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 66443 334455555543 22333343332 334566788888888888877665544433
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=1.1e-10 Score=109.26 Aligned_cols=301 Identities=10% Similarity=0.040 Sum_probs=180.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HhH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV----THTTILGGYVWRGDIENAKRVFGDILDRGWV-PDA----TTY 258 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 258 (527)
.......+...|++++|...+++........+.. .+..+...+...|++++|.+.+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888776643222222 4556666777888888888888877653111 121 234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CHHh
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDN----GVE--P-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP----SSAL 327 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 327 (527)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777888888888888876642 211 2 23445566777778888888888888776643221 1234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HhhHH----HHHHHHHHcCCHHHHHHHHHHHhcCCCCC----HHHH
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPD--NAISS----TIIHWLCKEGKIWEAKKLFDEFERGSIPS----LLTY 397 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 397 (527)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++......+.+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55667777778888888888877765311111 11111 22334667788888888877774322211 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEK----GVEPNV-FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIE 472 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 472 (527)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 56677777778888888777776542 211122 245555666777778888887777777521 10 01122
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC
Q 043284 473 GLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
.+...| +....+++.+....+.
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 344444 5666666666665543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.2e-11 Score=102.97 Aligned_cols=162 Identities=12% Similarity=0.001 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~ 85 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA---FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 44556666666666666666666654443 24556666666666666666666666666554222 44555556666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665543 344555555556666666666666666655544 12234445555555555555555
Q ss_pred HHHHHHhccc
Q 043284 204 AIRVLDEMPS 213 (527)
Q Consensus 204 A~~~~~~~~~ 213 (527)
|.+.+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.3e-10 Score=108.78 Aligned_cols=269 Identities=10% Similarity=0.011 Sum_probs=145.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCCH----HHHH
Q 043284 154 TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPNL----VTHT 224 (527)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~ 224 (527)
.....+...|++++|...+++...... ..+. ..++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455566777777777776655421 1111 1345555666667777777777766554210 0111 2244
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHH
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDR----GWV--P-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP----NEVTY 293 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~ 293 (527)
.+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5556666777777777777666542 111 1 22344556666667777777777777665432111 12345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HhhHH
Q 043284 294 GVMIEAFCKGKKSGEARNLLDDMLQRKYVPS--SALCC----KVIDLLCEEGKVEDACELWKRLLRKNCMPD---NAISS 364 (527)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 364 (527)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5566666677777777777776654311111 11111 122335566777777777766654332111 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFER-----GSIPSL-LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+...+...|++++|...++.... +.+++. ..+..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556666677777777777766511 111112 24555566666677777777777766654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=1.3e-11 Score=123.76 Aligned_cols=166 Identities=6% Similarity=-0.041 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+..+++.++..+.+.|++++|++.|+++.+..|. +..++..+..+|.+.|++++|++.|++.++.+ +.+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4779999999999999999999999999987554 67889999999999999999999999999886 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.++...|++++|++.|++..+. .+.+...|+.+..+|.+.|++++|++.|++..+... -+...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 9999999999999999999876 234578899999999999999999999999988652 2578899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043284 237 ENAKRVFGDILD 248 (527)
Q Consensus 237 ~~a~~~~~~~~~ 248 (527)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4.4e-11 Score=99.54 Aligned_cols=164 Identities=17% Similarity=0.077 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45556666666777777777777776654332 45566666666777777777777777766653 3455666666666
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
+...|++++|...+++.... .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666554 22344455555555566666666666665555432 1234455555555555555555
Q ss_pred HHHHHHHHHH
Q 043284 239 AKRVFGDILD 248 (527)
Q Consensus 239 a~~~~~~~~~ 248 (527)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=1.9e-10 Score=99.45 Aligned_cols=201 Identities=11% Similarity=-0.018 Sum_probs=160.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043284 253 PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI 332 (527)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (527)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888899999999999999999999998764367888888999999999999999999999986543 567888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Q 043284 333 DLLCEEGKVEDACELWKRLLRKNCMPDN-------AISSTIIHWLCKEGKIWEAKKLFDEFERGSIP--SLLTYNTLIAG 403 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 403 (527)
.++...|++++|...+++..+..+. +. ..+..+...+...|++++|...|+++....+. +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999987533 44 45777888899999999999999999777766 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 043284 404 MCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT 465 (527)
Q Consensus 404 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 465 (527)
|...| ..+++++...+ ..+...|.... ....+.+++|+..++++++. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 86554 44556666543 23444444433 33456789999999999985 46543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=9.8e-12 Score=111.37 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=108.4
Q ss_pred hcCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------CCCCcChhhHHHHH
Q 043284 53 RQQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN------PEIKCGENLFITVI 121 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~ 121 (527)
..|++++|+..|+++++.. +..+....++..++..+...|++++|...++++.+. ...+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777777776665421 122234667888888899999999999999888764 11223455777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCChhhH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN-------VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF------KVVPNVFTC 188 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 188 (527)
..+...|++++|++.+++..+.. .+....++..+...+...|++++|...|++..... ..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88888899999988888877641 12235567777777888888888888777766430 111124456
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccc
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+...+...|++++|...+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777777777777777766654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=2.5e-11 Score=107.41 Aligned_cols=190 Identities=9% Similarity=-0.016 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFI 118 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 118 (527)
++..+..++..+.+.|++++|+..|+.+++..|..+....++..++.++...|++++|+..|+++.+..|..+ ...++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4456778889999999999999999999888776444478899999999999999999999999988644332 345677
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH
Q 043284 119 TVIRNYGL--------AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI 190 (527)
Q Consensus 119 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (527)
.+..++.. .|++++|+..|+++.+.. |.+......+.. +..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH-----HHHHHHH
Confidence 88888888 899999999999998864 233333321110 0000000 0111344
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVP--NLVTHTTILGGYVWR----------GDIENAKRVFGDILDR 249 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 249 (527)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+.+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5555666666666666666655432110 123445555555544 5666666666666654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=1.1e-10 Score=105.14 Aligned_cols=165 Identities=11% Similarity=0.008 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCC--C----H
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNC---MP--DNAISSTIIHWLCKE-GKIWEAKKLFDEFERGSIP--S----L 394 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~ 394 (527)
++..+..+|...|++++|+..+++...... .+ ...++..+..+|... |++++|...|++.....+. + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444445555555555555444443210 00 123456677777775 8888888888776321111 1 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV------FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK---- 464 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---- 464 (527)
.+++.++..+...|++++|+..|++..+....... ..|..+..++...|++++|+..|++.++. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 56788888899999999999999988875322221 14667777888899999999999988763 3432
Q ss_pred --HHHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 043284 465 --TSFSLLIEGLY--ESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 465 --~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 493 (527)
..+..++.++. ..+++++|.+.|+++...
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 13444555554 446788888888765443
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=3.7e-09 Score=101.83 Aligned_cols=379 Identities=9% Similarity=0.015 Sum_probs=210.0
Q ss_pred hcC-ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC-h
Q 043284 53 RQQ-NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR-P 130 (527)
Q Consensus 53 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 130 (527)
++| +++.|+.+|++++..-|. |+++.+..+|++..... |+...|...+....+.+. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKK 64 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC---
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchH
Confidence 456 488889999888655442 88999999999998853 377788877777766663 4
Q ss_pred hHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 131 ELAVKTFLRIEKF-NV-QRSVRSLNTLLNALV----QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 131 ~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
+....+|+..+.. |. +.+...|...+..+. ..|+.+.+..+|++.... ....-...|......- +......+
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE-~~~~~~~~ 142 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFE-LELNKITG 142 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHH-HHHCHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHH-HHhccccH
Confidence 5677788877654 32 345677777776654 345678888888888753 1111111222221111 11111112
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--C-----hhHHHHH
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG--R-----LTDAVKV 277 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~ 277 (527)
..++.+ .. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+
T Consensus 143 ~~~~~~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGD-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHH-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHH-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 222111 11 123334444443332100013334554444332221 0 2345677
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--
Q 043284 278 MDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN-- 355 (527)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 355 (527)
|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh
Confidence 77777653 335677777777777888888888888888776 22222221 22222111111 22222110
Q ss_pred ----------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 043284 356 ----------CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES-AELTEAGRLWDDMVEKG 424 (527)
Q Consensus 356 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 424 (527)
......+|...+....+.++.+.|..+|+++ .....+...|...+..-... ++.+.|..+|+...+.-
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0011234555556666677788888888888 32223444454333322222 35888888888887752
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 425 VEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 425 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+-++..+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234455666676677888888888888862 2456677777766777888888888887764
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=3e-09 Score=102.50 Aligned_cols=366 Identities=10% Similarity=-0.001 Sum_probs=223.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhCCC-CCcChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARA-FDAVESLLTELKQNPE-IKCGENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~ 122 (527)
...+..+-. |+++.+.++|+++++.. |+...|...+....+.++ .+....+|+.+...-+ ...+..+|...+.
T Consensus 19 er~l~~~P~-~~~e~~~~iferal~~~----ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 19 EHARRLYMS-KDYRSLESLFGRCLKKS----YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHCCC-CCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 333444433 89999999999997643 588899999988887764 4667888998887522 3346678888777
Q ss_pred HHH----hcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 123 NYG----LAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 123 ~~~----~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
.+. .+|+.+.+..+|++.+.. |+. ...|...... ....+...+..++.+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-------------------- 150 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKKIVGDTL-------------------- 150 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH--------------------
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh--------------------
Confidence 654 346788999999999974 322 1222222221 11112222333322211
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRG--D-----IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG 269 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (527)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|
T Consensus 151 --~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 --PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 112222323322221000013345554444322211 1 345677888888753 446778888888888889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------CCC---CHHhHHHHHHHHHh
Q 043284 270 RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK---------YVP---SSALCCKVIDLLCE 337 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~ 337 (527)
+.+.|..+|++.... +.+...|... ....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 228 ~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999998887 3333333322 211111111 22222210 001 12446666667777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE-GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
.++.+.|..+|+.+ +. ...+..+|...+..-... ++.+.|..+|+......+.+...+...+......|+.+.|..+
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999999 32 223444554333333333 3699999999999554555666777778878889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99973 2567788888777788999999999988874
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=7.1e-09 Score=92.26 Aligned_cols=221 Identities=10% Similarity=-0.015 Sum_probs=165.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC--CchHHHHHHHHhhhCCCCCcChhhHHHHHHHH----Hhc
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR--AFDAVESLLTELKQNPEIKCGENLFITVIRNY----GLA 127 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 127 (527)
....++|++.++.++..+|. +..+|+....++...| ++++++..++.+....|- +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhc
Confidence 34557999999999999884 7789999999999888 999999999999987554 455666444444 444
Q ss_pred ---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC--
Q 043284 128 ---GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD--LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-- 200 (527)
Q Consensus 128 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 200 (527)
+++++++++++++.+.. +.+..+|+.-..++...|.++ ++++.++++... .+-|...|+.....+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 78999999999999876 678889998888888888888 899999998876 34467777777766666665
Q ss_pred ----hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhH
Q 043284 201 ----VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN-AKRVFGDILDRG--WVPDATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 201 ----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 273 (527)
++++++.++++....+ -|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++.++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 7778888877776653 367777777777777766433 445555554432 12356667777777777777778
Q ss_pred HHHHHHHHHH
Q 043284 274 AVKVMDEMED 283 (527)
Q Consensus 274 a~~~~~~~~~ 283 (527)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887777765
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=7.1e-11 Score=105.72 Aligned_cols=227 Identities=15% Similarity=0.075 Sum_probs=144.6
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHhHHHH
Q 043284 266 IKLGRLTDAVKVMDEMEDN-------GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR------KYVP-SSALCCKV 331 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 331 (527)
...|++++|+..+++..+. ..+....++..+...+...|++++|...+++..+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888777776542 11223567788888889999999999999888764 2222 34567778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CCCCHHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRK------N-CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERG--------SIPSLLT 396 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 396 (527)
..++...|++++|...++++... . .+.....+..+...+...|++++|...++++... .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988887764 1 1223556677788888888888888888887322 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCC
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEK-------GVEPN-VFTYNMLIQGFCKIGNAK------EGIRILEEMLDKGCFP 462 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p 462 (527)
+..++..|...|++++|..+++++.+. ...+. ...|..+.......+... .+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 778888888888888888888887753 11222 223333333333322222 222222211110 011
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
...++..++..|.+.|++++|.++++++.+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345777888888888888888888887653
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=1.9e-09 Score=94.89 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=169.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 043284 228 GGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG 307 (527)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (527)
+-..-.|++..++.-. .+.........-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445679999888733 3222222333444556888888887742 11234443444444433 322
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 308 EARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC-MPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777888777654 44555566788899999999999999999877664 236677788899999999999999999999
Q ss_pred hcCCCC----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 387 ERGSIP----SLLTYNTLIAG--MCESA--ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 387 ~~~~~~----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
....+. +-.+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 654331 24445555555 34344 899999999999765 566334444555889999999999999976642
Q ss_pred -----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 459 -----GC----FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 459 -----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
+. +.+..++..++......|+ +|.++++++.+..|..+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 11 2355666567777777787 88999999988876554
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=6.4e-09 Score=91.50 Aligned_cols=250 Identities=7% Similarity=0.011 Sum_probs=172.0
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (527)
++-..-.|++..++.-..++... .....-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 34455679999999866555432 2233444566888888887742 12233433444444333 322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY-VPSSALCCKVIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (527)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+.++.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888877654 45666667888899999999999999999877654 23567778889999999999999999999
Q ss_pred HHhCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 351 LLRKNCMP-----DNAISSTIIHW--LCKEG--KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 351 ~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.... |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9876 34 24555556655 33344 8999999999985543 442333334448899999999999999776
Q ss_pred Hc-----CC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043284 422 EK-----GV----EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS 466 (527)
Q Consensus 422 ~~-----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 466 (527)
+. .. +.|+.++..++......|+ +|.++++++.+. .|+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 43 11 3356677567666666787 889999999985 466544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=3.2e-10 Score=101.95 Aligned_cols=195 Identities=10% Similarity=0.001 Sum_probs=89.6
Q ss_pred HHhcCCchHHHHHHHHhhhC---CCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CC--CHHHHHHHHHH
Q 043284 88 LARARAFDAVESLLTELKQN---PEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNV---QR--SVRSLNTLLNA 158 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~ 158 (527)
+...|++++|...|+++.+. .+.++ ...+|..+..+|...|++++|+..+++..+... .+ ...++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544432 01110 123455555555555555555555555543210 00 02345555555
Q ss_pred HHhc-CCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH------HHHHHHH
Q 043284 159 LVQN-KRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL------VTHTTIL 227 (527)
Q Consensus 159 ~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 227 (527)
|... |++++|+..|++.........+ ..+++.+...+.+.|++++|+..|++..+....... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5554 6666666555555432100000 234555556666666666666666655544221111 1344555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CC---HHhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 043284 228 GGYVWRGDIENAKRVFGDILDRGWV-PD---ATTYTVLMDGYI--KLGRLTDAVKVMDEME 282 (527)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 282 (527)
.++...|++++|...|++.++.... ++ ...+..++..+. ..+++++|+..|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5555666666666666655543110 00 112233334443 2345666666665544
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=3.3e-10 Score=97.54 Aligned_cols=186 Identities=7% Similarity=-0.051 Sum_probs=127.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 121 (527)
.+..++..+.+.|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++.+..|..+.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 355678889999999999999999988777654456789999999999999999999999998865543332 2455555
Q ss_pred HHHHh------------------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 122 RNYGL------------------AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 122 ~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.++.. .|++++|+..|+++.+.. |.+..++....... .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------
Confidence 55544 456777777777776653 22222222111000 000000
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN----LVTHTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
......+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112346677888889999999988887753 33 2467778888888999999999888887764
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=3.3e-10 Score=96.17 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHH----------------HHHHHHhcCCchHHHHHHHHhhhCC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHS----------------IIHKLARARAFDAVESLLTELKQNP 108 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (527)
...+..+...|++++|+..|+.+++.+|. +...|.. ++.++.+.|++++|+..|+++.+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44566777889999999999988877663 4555655 5555566666666666666655543
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCChh
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR--YDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
|. +...+..+..++...|++++|+..|++..+.. |.+..++..+..++...|+ .+.+...++.... ..|...
T Consensus 85 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 158 (208)
T 3urz_A 85 PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQY 158 (208)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhH
Confidence 32 44555555566666666666666666665554 3445555555555544332 2233333333321 112222
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.+..+..++...|++++|+..|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2223333444455555555555555543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=4.1e-11 Score=95.71 Aligned_cols=146 Identities=11% Similarity=0.018 Sum_probs=108.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
|+.++...|++++|++.++.++...| .++..+..+...|.+.|++++|++.|+++.+..|. +..+|..+..++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 56667778889999999988865443 34557778888888999999999999988886554 67788888888899
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM-FKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.|++++|+..|++..+.+ |.+..++..+..++.+.|++++|... +++..+. .+.+..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999999999888875 56678888888888888888765544 5666654 23356667766666666654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.5e-10 Score=116.89 Aligned_cols=174 Identities=10% Similarity=-0.063 Sum_probs=120.7
Q ss_pred HhcCCchHHHHHHHHhh--------hCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 89 ARARAFDAVESLLTELK--------QNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
...|++++|++.++++. +..|. +...+..+...+...|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56777888888888777 43332 55667777777788888888888888877765 456777777777888
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAK 240 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (527)
..|++++|...|++.... .+.+...|..+..++.+.|++++ ++.|++..+.+. .+...|..+..++.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877765 23356667777777888888888 888877776542 25667777777888888888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 043284 241 RVFGDILDRGWVPDATTYTVLMDGYIKLGR 270 (527)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (527)
+.|+++++.+ +.+...+..+..++...++
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8887777653 2235566666666655443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=2.6e-10 Score=93.93 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.....++..+.+.|++++|+..|+++++.+|+ +...+..+..++...|++++|+..++++....| +...+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHH
Confidence 34667888999999999999999999887774 778999999999999999999999999877544 333332222
Q ss_pred HH-HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 122 RN-YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 122 ~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.. +...+....|+..+++..+.. |.+...+..+..++...|++++|...|+++........+...+..+..++...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11 223334445788888887765 4567788888888888888888888888877652111234567778888888888
Q ss_pred hHHHHHHHHhcc
Q 043284 201 VEGAIRVLDEMP 212 (527)
Q Consensus 201 ~~~A~~~~~~~~ 212 (527)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888877654
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=6.7e-10 Score=98.18 Aligned_cols=211 Identities=12% Similarity=0.028 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNV--QRSVRSL 152 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 152 (527)
.+...+..++..+.+.|++++|+..|+++.+..|..+. ..++..+..++...|++++|+..|+++.+... +....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 46778888999999999999999999999886544222 56788899999999999999999999988642 1224567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHH
Q 043284 153 NTLLNALVQ--------NKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTH 223 (527)
Q Consensus 153 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 223 (527)
..+..++.. .|++++|...|+++... .|+ ......+... ..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~--------------~~~~~~----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKI--------------RELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHH--------------HHHHHH----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHH--------------HHHHHH----HHHHH
Confidence 778888888 89999999999998876 233 2222222111 111100 11235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH-
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVP--DATTYTVLMDGYIKL----------GRLTDAVKVMDEMEDNGVEPNE- 290 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~- 290 (527)
..+..+|...|++++|+..|+.+++..... ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 677889999999999999999999864221 245677788888866 8999999999999886 3443
Q ss_pred ---HHHHHHHHHHHccCCHHHH
Q 043284 291 ---VTYGVMIEAFCKGKKSGEA 309 (527)
Q Consensus 291 ---~~~~~l~~~~~~~~~~~~a 309 (527)
.....+...+.+.++++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3444555555555555443
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=8.2e-10 Score=93.70 Aligned_cols=166 Identities=9% Similarity=-0.027 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH----------------HHHHHHhcCChhHHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT----------------VIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+...+...+..+...|++++|+..|+++.+..|. +...+.. +..++...|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666677778889999999999888875443 3445555 666666777777777777776
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC--hHHHHHHHHhcccCCCCC
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD--VEGAIRVLDEMPSMGMVP 218 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p 218 (527)
.+.. |.+..++..+..++...|++++|...|++.... .+.+...|..+..+|...|. .+.+...+...... .|
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TK 155 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cc
Confidence 6654 455666666667777777777777777766654 22345556666665544432 23344444443321 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
....+.....++...|++++|...|++.++.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222333344445556666666666666554
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=2e-09 Score=83.99 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|..+|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...+..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 78 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHH
Confidence 34566666677777777777777665544 24556666666666677777777777766654322 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666677777777776666553 34455666666666666666666666666554
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=3.9e-09 Score=82.28 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+..+...+...|++++|..+++++....+.+...+..++..+...|++++|..+++++...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555666666777777777766644444556666666677777777777777777766542 23455666666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++....
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77777777777776642 2245566667777777777777777777765544
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.1e-09 Score=98.03 Aligned_cols=166 Identities=11% Similarity=-0.021 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-HHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS-LNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 155 (527)
+...+..+...+...|++++|...|+++.+..|. +...+..+...+...|++++|+..++++.... |+... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 4556777777777778888888888877775444 55677777777778888888888887776653 34332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CCHHHHHHHHHHHHhcC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PNLVTHTTILGGYVWRG 234 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~ 234 (527)
...+...++.+.|...+++.... .+.+...+..+...+...|++++|++.|.++.+.... .+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33455666777777777777665 2345667777777778888888888888777765321 12456777777777788
Q ss_pred ChHHHHHHHHHHHH
Q 043284 235 DIENAKRVFGDILD 248 (527)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (527)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 87777777776543
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=4.9e-09 Score=90.16 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSV---RSL 152 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 152 (527)
+...+..++..+...|++++|+..|+++.+..|..+ ....+..++.++.+.|++++|+..|+++.+... .+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHH
Confidence 456778888889999999999999999988645433 245788889999999999999999999988752 222 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 153 NTLLNALVQ------------------NKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 153 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+..++.. .|++++|...|+++... .|+ ...+....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----------HHHHHH--
Confidence 555555554 45666777777766654 222 22222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP--DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
......+...+.+.|++++|+..|+.+++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778899999999999999999873221 12568889999999999999999999998874
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=7.1e-08 Score=85.84 Aligned_cols=230 Identities=7% Similarity=0.007 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----Hhc---CCHh
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK--KSGEARNLLDDMLQRKYVPSSALCCKVIDLL----CEE---GKVE 342 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 342 (527)
++|+++++++...+ +-+...|+.-...+...+ +++++++.++.++..++. +..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34444444444432 112333444444444444 555555555555544322 222232222222 222 4566
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 043284 343 DACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIW--EAKKLFDEFERGSIPSLLTYNTLIAGMCESAE------LTEAG 414 (527)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 414 (527)
+++.+++.+.+.+++ +..+++.-...+.+.|.++ +++..++++....+.|...|+.....+...++ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665433 5555555555555566655 66666666655556666677666666666555 77888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRILEEMLDKG--CFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888777663 3356677777777777776433 445666655432 12366777888888888888888888888887
Q ss_pred h-CCCCChhhHHHHH
Q 043284 492 A-SGSVESDSWNFLL 505 (527)
Q Consensus 492 ~-~~~~~~~~~~~ll 505 (527)
. .+|.....|+...
T Consensus 286 ~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 286 SKYNPIRSNFWDYQI 300 (306)
T ss_dssp HTTCGGGHHHHHHHH
T ss_pred hccChHHHHHHHHHH
Confidence 6 4666666666544
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.2e-09 Score=110.32 Aligned_cols=172 Identities=11% Similarity=0.026 Sum_probs=103.6
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 125 GLAGRPELAVKTFLRIE--------KFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..|++..+. .+.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 55666777777776666 332 344556666666666677777777777666654 2234556666666666
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
..|++++|++.|++..+... -+...+..+..++.+.|++++ ++.|+++++.+ +.+...|..+..++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777766665431 245566666666666777766 66666666653 2255566666666777777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 043284 277 VMDEMEDNGVEPN-EVTYGVMIEAFCKGK 304 (527)
Q Consensus 277 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 304 (527)
.|+++.+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 77666654 233 445555555554433
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.5e-08 Score=84.73 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK----KSGEARNLLD 314 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 314 (527)
|++.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455544443 44455555555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhC
Q 043284 315 DMLQRKYVPSSALCCKVIDLLCE----EGKVEDACELWKRLLRK 354 (527)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 354 (527)
+..+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 554432 33333344444433 44445555555544443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=4.8e-10 Score=89.45 Aligned_cols=145 Identities=11% Similarity=-0.014 Sum_probs=91.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+..+...|++++|+..++......|. +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445567777777777777654222 34456667777777788888888887777765 4567777777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHH-HHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV-LDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+++|...|++..+. .+.+...|..+...|.+.|++++|.+. +++..+... -+...|......+...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 77777777777664 222456677777777777777665544 455555431 245555555555555543
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=1.5e-09 Score=89.42 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH-HHc
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA-LCK 197 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 197 (527)
.....+...|++++|+..|++..+.. |.+...+..+..++...|++++|...|++.... .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 34444444555555555555444432 233444444455555555555555555444433 1122211111111 111
Q ss_pred CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP-DATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
.+....|+..|++..+.. +-+...+..+..++...|++++|...|+++++....+ +...+..+..++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455555554432 1134555555666666666666666666665553221 23455555666666666666666
Q ss_pred HHHHHH
Q 043284 277 VMDEME 282 (527)
Q Consensus 277 ~~~~~~ 282 (527)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.8e-08 Score=85.57 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=80.5
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG----KIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
...+..+...+...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|++.... .+...+..+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~~L 91 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 3334444444444444455555544444433 33334444444443 3 455555555554221 244445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043284 401 IAGMCE----SAELTEAGRLWDDMVEKGVE-PNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLI 471 (527)
Q Consensus 401 ~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 471 (527)
...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|+.+|++..+. ..+...+..|.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG 169 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 555544 55566666666665544211 014455555555555 55666666666666654 12333455555
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 043284 472 EGLYES-G-----NEGEVGKVVSMATASGS 495 (527)
Q Consensus 472 ~~~~~~-g-----~~~~A~~~~~~~~~~~~ 495 (527)
..|... | +.++|..+++++.+.+.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 555432 2 56666666666665554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=4e-09 Score=104.63 Aligned_cols=154 Identities=8% Similarity=-0.044 Sum_probs=112.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
.|++++|++.|+++++..| .+...+..++..+...|++++|.+.|+++.+..|. +...+..+..++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 4788899999998877766 36778888899999999999999999998886443 667888888889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC---CChHHHHHHHHh
Q 043284 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK---DDVEGAIRVLDE 210 (527)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~ 210 (527)
++.+++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999988875 566788888889999999999999999988776 233567788888888888 889999999988
Q ss_pred cccCC
Q 043284 211 MPSMG 215 (527)
Q Consensus 211 ~~~~~ 215 (527)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 87764
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=4.7e-09 Score=80.68 Aligned_cols=108 Identities=11% Similarity=-0.007 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.++..+..+.+.|++++|++.|+++++.+| .+..+|..++.++...|++++|+..|+++.+..|. +...|..+..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~ 89 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHHHHHHHH
Confidence 356677777777777777777777777666 36667777777777777777777777777765443 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
++...|++++|++.|++..+.. |.+..++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 7777777777777777777764 34455444443
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=7.3e-09 Score=92.67 Aligned_cols=159 Identities=10% Similarity=0.007 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLI-QGFC 440 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~ 440 (527)
.+..+...+...|++++|...|+++....|.+...+..++..+...|++++|...++++... .|+........ ..+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 33344444445555555555555554444444445555555555555555555555544433 23322211111 1233
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--hhhHHHHHHHH--HhchhhhH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE--SDSWNFLLTRI--VSDLDSGA 516 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ll~~~--~~~~~~a~ 516 (527)
..++.++|+..+++++... +.+...+..++..+...|++++|...++++.+..+.+ ...+..+...+ .|+.+.|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 4444444555555554432 1233444455555555555555555555555544433 33444444322 24444555
Q ss_pred HHHHHHH
Q 043284 517 GALDELL 523 (527)
Q Consensus 517 ~~~~~~l 523 (527)
..+.+.+
T Consensus 276 ~~~r~al 282 (287)
T 3qou_A 276 SXYRRQL 282 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=9.2e-09 Score=102.02 Aligned_cols=151 Identities=7% Similarity=-0.082 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF 383 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (527)
|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554443211 334444445555555555555555555554432 23444444555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHH
Q 043284 384 DEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI---GNAKEGIRILEEMLD 457 (527)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 457 (527)
++.....+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++++++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55433334444455555555555555555555555544431 11234444444444444 555555555555544
No 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=3.1e-09 Score=82.69 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC
Q 043284 32 TPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111 (527)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 111 (527)
.++..++.++..+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 82 (133)
T 2lni_A 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT- 82 (133)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-
Confidence 34444455556778888889999999999999999877665 36778888888888889999999999888875443
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (527)
+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 56778888888888888888888888887764 344556666666665544
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=4.9e-09 Score=94.92 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=118.5
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|++++|.++++++.+..+. + + +...+++++|...|.++ +..|...|++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQ 54 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHH
Confidence 467888999999888654332 0 0 00034555555555443 223444555555
Q ss_pred HHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CChhhHHHHHHHHHcCCChHH
Q 043284 133 AVKTFLRIEKFNV---QR--SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF---KVV-PNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 133 A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~ 203 (527)
|.+.|.+..+... .+ -..+|..+..+|...|++++|+..|++..... +.. ....+++.+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 5555555433210 01 12345555556666666666666555543321 100 013455566666666 66766
Q ss_pred HHHHHHhcccCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhH
Q 043284 204 AIRVLDEMPSMGMVP-----NLVTHTTILGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 204 A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~ 273 (527)
|+..|++..+..... ...++..+...+...|++++|+..|++.++. +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 666666654421000 1345666677777777777777777766653 11111 1245555666666777777
Q ss_pred HHHHHHHHHHCCCCC-CH---HHHHHHHHHHHccCCHHHHHH
Q 043284 274 AVKVMDEMEDNGVEP-NE---VTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 274 a~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|...|++.. ..... +. .....++..+ ..++.+.+.+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777777776 32110 11 1233344444 4566655555
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=4.1e-07 Score=81.75 Aligned_cols=177 Identities=7% Similarity=-0.032 Sum_probs=134.6
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc-
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA- 127 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 127 (527)
.....+..++|++.++.++..+|. +..+|+....++...| .+++++..++.+....|- +..+|..-..++...
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhc
Confidence 334556778999999999999884 7889999988888888 599999999999987554 667787766666666
Q ss_pred C-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 128 G-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD--------LVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 128 g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
+ +++++++.++++.+.. +.+..+|+....++.+.|.++ ++++.++++... .+-|...|+.....+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 6 8899999999999876 678888887777776666666 888888888776 344677788777777776
Q ss_pred CC-------hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 199 DD-------VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 199 ~~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+. ++++++.++++..... -|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 65 5777777777766542 366677666666655554
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.5e-08 Score=88.00 Aligned_cols=190 Identities=11% Similarity=-0.112 Sum_probs=92.2
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHH-------HHHHHhcCCchHHHHHHHHhhhCCCCCcC------------
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSI-------IHKLARARAFDAVESLLTELKQNPEIKCG------------ 113 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 113 (527)
..+++..|++.|.++...+|+ ....|..+ ...+.+.++..++...+.+.....|....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 467777777777777777664 55577766 45555555556666555555543111100
Q ss_pred -------hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--
Q 043284 114 -------ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-- 184 (527)
Q Consensus 114 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 184 (527)
..+.......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccH
Confidence 1222334445555555555555555555432 22113344444555555555555555433321 0110
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 185 VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN--LVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12344444555555555555555555443211122 123333444444555555555555555444
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=3.5e-09 Score=83.96 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+.+.|++++|+..|+++....|. +...|..+..++...|++++|++.|++..+.. |.++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 4556666666666677777777777766665443 55566666666667777777777777666654 44556666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+|...|++++|...|++....
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777666666654
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=1.9e-08 Score=91.04 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CCCC-cChhh
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH---NYDTYHSIIHKLARARAFDAVESLLTELKQN---PEIK-CGENL 116 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-~~~~~ 116 (527)
+...+..+...|++++|...|.+++...+.... ...+|..++..+...|++++|+..|+++.+. .+.. .....
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445555556666665555555433221110 1224455555555555555555555554432 0000 01223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQR-----SVRSLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
+..+...|.. |++++|++.|++..+..... ...++..+..++...|++++|+..|++..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444544 55555555555444321000 02334444444444555555554444443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=4.3e-08 Score=79.52 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+...|++++|...|+.+++..| .+..++..++..+...|++++|...++++.+..|. +...+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 3456677777888888888888888877665 35677788888888888888888888887775433 556777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT--LLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
.++...|++++|+..|++..+.. +.+...+.. .+..+...|++++|...+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 78888888888888888877764 344444433 3333666777777777776554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=3.8e-09 Score=94.18 Aligned_cols=192 Identities=6% Similarity=-0.103 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+...|++++|+..|+.+++..|. +...|..++.++.+.|++++|+..++++.+..|. +...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 34667888888889999999999888877663 6778888888888888999998888888876443 667788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.++...|++++|+..|++..+.+. .+...+...+....+. .++......... ....+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKRWNSIEER--RIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHHHHHHHHT--CCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHHHHHHHHH--HHhhhHHHHHHHHHH--HHHHH
Confidence 888888888888888888776531 1111111111111111 111111111111 123333333333222 25777
Q ss_pred HHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLV-THTTILGGYVWR-GDIENAKRVFGDILD 248 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 248 (527)
++|++.++...+.. |+.. ....+...+.+. +.++++.++|..+.+
T Consensus 152 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777766642 4432 222333333333 456667777766654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=6.1e-07 Score=80.50 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----CC--HHH
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-----AISSTIIHWLCKEGKIWEAKKLFDEFERGSI----PS--LLT 396 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~--~~~ 396 (527)
+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++...... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777765322111 1233455566777889999998888732211 11 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEK-GVEPN-----VFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFPN-KT 465 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~ 465 (527)
|+.++..|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..++++++. +.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888999999999999999999988732 00122 257888889999999999999999998753 11111 56
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043284 466 SFSLLIEGLYESGNEGEV-GKVVSMATA 492 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 492 (527)
++..++.+|.+.|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788899999999999999 777887654
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=1.3e-08 Score=80.66 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=76.8
Q ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 63 IFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
.|++++...| .+...+..++..+...|++++|+..|+++....|. +...|..+..++...|++++|+..|++...
T Consensus 9 ~~~~al~~~p---~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNEISS---DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTTCCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHcCCH---hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3555544443 35556777777777777777877777777765443 566677777777777777778777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 143 FNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+ +.+...+..+..++...|++++|...|++....
T Consensus 84 l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 84 MD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 455667777777777777777777777777654
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=1.8e-07 Score=79.44 Aligned_cols=126 Identities=9% Similarity=-0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.++ .++..++..++..+...|++++|+..|+++.+..|. +...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence 4567888889999999999999884 247789999999999999999999999999886443 66788899999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSV----------------RSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+...|++++|++.|++..+.. +.+. .++..+..++...|++++|...|++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999998864 2222 67888888899999999999999888764
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=4.1e-07 Score=81.65 Aligned_cols=163 Identities=16% Similarity=0.080 Sum_probs=93.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHH
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTT 225 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 225 (527)
.+..+...|++++|..++++........|+. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556667777777777777766543222331 12334555666667777777777776653211 12 225666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDR-----GWVP-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVEPN-EVTYG 294 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 294 (527)
+..+|...|++++|+..|+++++. +..+ ...++..+..+|.+.|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777776631 1111 1235566666777777777777776665532 11111 34556
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHH
Q 043284 295 VMIEAFCKGKK-SGEARNLLDDML 317 (527)
Q Consensus 295 ~l~~~~~~~~~-~~~a~~~~~~~~ 317 (527)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466666665544
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=5.7e-08 Score=84.30 Aligned_cols=189 Identities=8% Similarity=-0.088 Sum_probs=115.6
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcChhhHHHH-------HHHHHhcCChhHHHHHHHHHHhc------------CCC----
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGENLFITV-------IRNYGLAGRPELAVKTFLRIEKF------------NVQ---- 146 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~---- 146 (527)
..++...|.+.|.++....|. ....|..+ ...+...++..+++..+..-... |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 568888888888888876554 45567766 45566666666666666555542 100
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC--H
Q 043284 147 ----RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN--L 220 (527)
Q Consensus 147 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~ 220 (527)
.-......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00123344556677777777777777776643 2333255555566777777777777777555431 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD--ATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666677777777777777777764332132 234555666677777777777777777765
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=7.1e-08 Score=73.98 Aligned_cols=98 Identities=5% Similarity=0.000 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+...+..+.+.|++++|++.|+++.+..|. +..+|..+..++...|++++|++.|++.++.+ +.+..+|..+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 456777888888888888888888888876444 66788888888888888888888888888775 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++...|++++|.+.|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888888888765
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=2.6e-06 Score=76.62 Aligned_cols=242 Identities=11% Similarity=0.014 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CHHHHH
Q 043284 234 GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG-K-KSGEAR 310 (527)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 310 (527)
+..++|+++++.++..+.. +..+|+.-..++...| ++++++..++.+..... .+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3344566666666555322 4445555555555555 35555555555555432 2444454444444333 3 445555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 043284 311 NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGS 390 (527)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (527)
++++++.+.+.. +...|..-..++.+.+.++. .+ ...+.++++.++++....
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 555555443322 33344333333333222220 00 000125556666654445
Q ss_pred CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH------------------
Q 043284 391 IPSLLTYNTLIAGMCESAE-------LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNA------------------ 445 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------------------ 445 (527)
+.|...|+.....+.+.++ ++++++.+++++... +-|...|+.+-..+.+.|+.
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 5566666666666655554 566777776666542 22455565555555444432
Q ss_pred --HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCChhhHHHHHH
Q 043284 446 --KEGIRILEEMLDKG-----CFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT-ASGSVESDSWNFLLT 506 (527)
Q Consensus 446 --~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ll~ 506 (527)
....+...++...+ -.++...+..+++.|...|+.++|.++++.+. +.++.....|+...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 22222222332221 13566778888899999999999999999986 445555556665444
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=2.6e-07 Score=78.49 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+..++..+...|++++|...|+++.. ++...+..+..++...|++++|++.|++..+.. +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 456677788889999999999988742 266788889999999999999999999998875 56778888899999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCC--------------ChhhHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVP--------------NVFTCNILIKALCKKDDVEGAIRVLDEMPSMG 215 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 215 (527)
...|++++|...|++........+ ....+..+..++.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998876521111 12567777778888888888888888877654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=7.4e-08 Score=78.10 Aligned_cols=128 Identities=6% Similarity=-0.006 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|++.+++..+.. +.+..++..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 35666677777777777777777777765333 55667777777777777777777777777664 4556677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhH--HHHHHHHHcCCChHHHHHHHHhc
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTC--NILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
+...|++++|...|++..... +.+...+ ..++..+...|++++|++.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777776552 1233333 23333355566666666666543
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=3.7e-08 Score=77.97 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+.+.|++++|+..|+++++.+| .++..|..++.++...|++++|+..|+++.+..|. +...|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHH
Confidence 345678899999999999999999999999888 48889999999999999999999999999987655 6678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVR 150 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 150 (527)
+..+|...|++++|+..|++..+.. |+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999999874 5543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=6.5e-08 Score=79.52 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=100.2
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH-HHhcCCh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN-YGLAGRP 130 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 130 (527)
...|++++|+..++.+++..| .+...|..++..+...|++++|...|+++.+..|. +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCc
Confidence 467899999999999988776 47789999999999999999999999999886443 56778888888 7788998
Q ss_pred --hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 --ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++|+..+++..+.+ +.+...+..+..++...|++++|...|++....
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998875 566788888999999999999999999998875
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=2.2e-08 Score=89.25 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|+..|+++.+..|. +...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567778888888888888888888888875443 66777888888888888888888888888765 45677788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.++...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=1.7e-07 Score=72.55 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
+.+...+..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|++.+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 455778888899999999999999999998876443 66788888888999999999999999988875 456788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+..++...|++++|...|++.... .+.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 888899999999999999888765 2224455666666655444
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=1.2e-07 Score=73.13 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=68.2
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+...|++++|+..|+++++..| .+...+..++..+...|++++|...++++.+..|. +...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 88 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHHHHHHH
Confidence 445566666666666666666666655544 24556666666666666666666666666654322 3455556666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
.+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666665553 3345555555555555444
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=2.5e-07 Score=83.07 Aligned_cols=61 Identities=7% Similarity=-0.045 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGR-LTDAVKVMDEME 282 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 282 (527)
++..+..+|.+.|++++|+..+++.++. +..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4455555555555555555555554432 11111 3455555556666663 456665555544
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=3.3e-07 Score=82.23 Aligned_cols=167 Identities=7% Similarity=0.005 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hh
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS-----VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VF 186 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 186 (527)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++.........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444555555666666666555554321110 012233444555556666666666655432111111 23
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CH
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSM-GMVPN-----LVTHTTILGGYVWRGDIENAKRVFGDILDRG----WVP-DA 255 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 255 (527)
+++.+...|...|++++|+..|++..+. ...|+ ..++..+..+|...|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665411 00111 1456666667777777777777776665431 111 14
Q ss_pred HhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDA-VKVMDEME 282 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 282 (527)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566677777777777777 55566554
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=9.6e-08 Score=73.41 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=75.4
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-----hhhH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-----ENLF 117 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~ 117 (527)
.++.++..+.++|++++|+..|+++++.+|. +..+|..++.++...|++++|++.++++.+..|..+. ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567888888888888888888888887773 6778888888888888888888888887764221111 2355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
..+..++...|++++|++.|++.+.. .|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66677777778888888888777664 3555443
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2.4e-07 Score=70.71 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|++.|+.+++..| .+..++..++..+...|++++|...++++.+..+. +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~ 86 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHH
Confidence 34444555555555555555555544433 23444555555555555555555555555443221 33344444555
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 043284 124 YGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=5.3e-08 Score=77.20 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=84.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF 461 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 461 (527)
.|+++....+.+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++++... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444444566677777888888888888888888887652 3356677778888888888888888888888753 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
.+...+..++.++...|++++|.+.|+++.+..+.++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 2456777788888888888888888888877665433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=8.1e-08 Score=80.90 Aligned_cols=156 Identities=12% Similarity=-0.037 Sum_probs=93.3
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCH
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER------GSIPSLLTYNTLIAGMCESAEL 410 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 410 (527)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++... ..+.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44566666664433322 2223445556666666667777777766666522 1112345667777777778888
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCC
Q 043284 411 TEAGRLWDDMVEK----GVEP--NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPNK----TSFSLLIEGLYESGN 479 (527)
Q Consensus 411 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~ 479 (527)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+. .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888777766543 1111 133466677777788888888888877763200 0121 235677778888888
Q ss_pred hhHHHHHHHHHHhC
Q 043284 480 EGEVGKVVSMATAS 493 (527)
Q Consensus 480 ~~~A~~~~~~~~~~ 493 (527)
+++|.+.++++.+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=7.6e-08 Score=75.79 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|+..|+++....|. +...|..+..++...|++++|+..|++....+ +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3445555555666666666666666666554332 44555566666666666666666666666554 34455555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.++...|++++|...|+.....
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666665543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=1.3e-07 Score=86.46 Aligned_cols=132 Identities=12% Similarity=0.009 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC------------CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH------------NYDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
..+..++..+.+.|++++|+..|+++++..|.... ...+|..+..++.+.|++++|+..++++.+..|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35677888899999999999999999887774210 046777888888888888888888888877644
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV-HLMFKNSR 176 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 176 (527)
. +...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|+.+++ ..+|+.|.
T Consensus 228 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N--NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 56677788888888888888888888887765 45667777777777777777777 34555543
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=1.2e-08 Score=93.55 Aligned_cols=152 Identities=7% Similarity=-0.022 Sum_probs=102.9
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------------hhhHHHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------------ENLFITV 120 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l 120 (527)
.+++++|+..|+..+...| .+...+..++..+.+.|++++|+..|+++.+..+..+. ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p---~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL---EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 4566777777666544333 24667888888899999999999999988876443211 3566777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..++.+.|++++|+..+++.++.. +.+..++..+..++...|++++|+..|++.... .+.+...+..+..++.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777777765 456667777777777777777777777777654 22345566666666666666
Q ss_pred hHHH-HHHHHhc
Q 043284 201 VEGA-IRVLDEM 211 (527)
Q Consensus 201 ~~~A-~~~~~~~ 211 (527)
.++| ...|..|
T Consensus 280 ~~~a~~~~~~~~ 291 (336)
T 1p5q_A 280 QLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6666 3344444
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=7.8e-08 Score=81.02 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=94.6
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---C-CCCcChhhHHHHHHHHHhc
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN---P-EIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ 127 (527)
...|++++|.+.++.+.. +| .....++..+...+...|++++|...++++.+. . ..+....++..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 467888888886555522 22 235667888888888888888888888887762 1 1112334566777778888
Q ss_pred CChhHHHHHHHHHHhc----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHc
Q 043284 128 GRPELAVKTFLRIEKF----NVQ--RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCK 197 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 197 (527)
|++++|++.+++..+. +-. ....++..+...+...|++++|...+++.........+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 8888888888776654 101 11334666667777777777777777665532110111 1224455555666
Q ss_pred CCChHHHHHHHHhcc
Q 043284 198 KDDVEGAIRVLDEMP 212 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~ 212 (527)
.|++++|.+.+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 666666666555543
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.72 E-value=1.7e-07 Score=76.95 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--HH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG-FCKIGNA--KE 447 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 447 (527)
...|++++|...++......+.+...|..++..|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345677777777777755566677788888888888888888888888877652 2355667777777 6677887 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChh
Q 043284 448 GIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD 499 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 499 (527)
|...++++++.. +.+...+..++.++...|++++|...++++.+..+.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888888753 224566777888888888888888888888887765543
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=2.4e-08 Score=83.87 Aligned_cols=148 Identities=9% Similarity=-0.070 Sum_probs=79.8
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--------------hhhH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--------------ENLF 117 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~ 117 (527)
...|++++|.+.++......+ .....+..++..+...|++++|...|+++.+..+..++ ..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV---QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344555555555543321111 12345566666666777777777777776664332111 1456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK 197 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (527)
..+..++...|++++|+..+++..+.. +.+..++..+..++...|++++|...|++.... .+.+...+..+..++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 666666667777777777777666654 445666666666677777777777777666554 12244455555555555
Q ss_pred CCChHHHH
Q 043284 198 KDDVEGAI 205 (527)
Q Consensus 198 ~~~~~~A~ 205 (527)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554444
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=1.5e-07 Score=74.12 Aligned_cols=99 Identities=8% Similarity=-0.105 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+.+++.+| .+...|..++.++...|++++|+..|+++....|. +...+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 34567788999999999999999999998887 47889999999999999999999999999987554 66788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..++...|++++|++.|++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=5.6e-07 Score=68.62 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456666777777777777777777777664332 45566667777777777777777777776654 445666667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+...|++++|...|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=3.7e-07 Score=70.31 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|...|+++.+..|. +...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456666677777777777777777777664332 45566667777777777777777777776654 34566666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.++...|++++|...|++.... .+.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 7777777777777777776654 12244555555555555544
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.6e-07 Score=74.36 Aligned_cols=116 Identities=11% Similarity=0.025 Sum_probs=87.3
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.+...+..++..+...|++++|+..|+.+++..|........+..+...+...|++++|+..++++.+..+. +...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHH
Confidence 344567788889999999999999999998765521111677888888888999999999999888875443 566778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
.+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 88888888899999999998888764 344444444333
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.6e-07 Score=70.95 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+.+.|++++|+..|+.+++..|. +...|..++.++...|++++|+..++++.+..|. +...+..+..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 81 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Confidence 456677777777777777777777776663 5667777777777777777777777777765443 55667777777
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 043284 124 YGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...|++++|++.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777664
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.69 E-value=5.7e-07 Score=69.25 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=78.6
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 121 (527)
.+..++..+...|++++|+..|+.+++..|+......++..++.++...|++++|...|+++.+..|..+. ...+..+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 45567888888999999999999888777754433467888888888889999999999888876443211 45677788
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.++...|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888888888764
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=2.1e-05 Score=70.43 Aligned_cols=162 Identities=11% Similarity=-0.016 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 043284 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK-IWEAKKLFDEFERGSIPSLLTYNTLIAGMCES------------ 407 (527)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 407 (527)
+++++.+++.+.+.++. +...|+.-...+...|. +++++..++.+....+.|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 44444444444444322 33333333333334444 34444444444333444444444443333332
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 043284 408 --AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI-----------GNAKEGIRILEEMLDKGCFPNKTSFSLLI--- 471 (527)
Q Consensus 408 --~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--- 471 (527)
+.++++++.+++..... +-|...|+.+-..+.+. +.++++++.++++.+. .||. .|..+.
T Consensus 205 ~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~ 280 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIIL 280 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHH
Confidence 33566666666666542 22445555444444333 3577888888888874 4654 222222
Q ss_pred --HHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 472 --EGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 472 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
.+....|..+++...+.++.+.+|-...-|..+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 222346788899999999988887777677776653
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=1.7e-05 Score=70.94 Aligned_cols=182 Identities=7% Similarity=-0.062 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC-hHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-VEGAIR 206 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~ 206 (527)
+++++..++.+...+ +.+..+|+.-..++...| .+++++.+++.+... .+-|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 344555555555443 344445554444444444 245555555555443 22244444444444444444 355555
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR--------------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL---- 268 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 268 (527)
.++++.+..+ -|...|+.....+... +.++++++.+...+... +-|...|+.+--.+.+.
T Consensus 167 ~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 5555554432 2444444444333332 23556666666666553 23555555443333333
Q ss_pred -------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHHc
Q 043284 269 -------GRLTDAVKVMDEMEDNGVEPNEVTYGVMIE-----AFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 269 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~ 319 (527)
+.++++++.++++.+. .|+. .|..+.. .....+..+++...+.++.+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3466777777777765 3443 2322111 112345666777777777764
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=1.5e-07 Score=71.56 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+++++..|. +..+|..++.++...|++++|+..|+++.+..|. +...+..+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~l 91 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAAL 91 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 345678889999999999999999999988874 7889999999999999999999999999887554 66788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..++...|++++|+..+++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988753
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=8.3e-07 Score=66.84 Aligned_cols=96 Identities=19% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|...|+.+++..| .+...+..++..+...|++++|...++++.+..|. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~ 81 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Confidence 34555566666666666666666655544 24555666666666666666666666666554322 34455555666
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 043284 124 YGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666665543
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=4.8e-07 Score=67.46 Aligned_cols=102 Identities=9% Similarity=0.009 Sum_probs=76.3
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+...|++++|+..|+++++..| .+...+..++..+...|++++|...|+++.+..+...+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345566778888888888888888888877665 35667788888888888888888888888775332124567777
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhcC
Q 043284 120 VIRNYGLA-GRPELAVKTFLRIEKFN 144 (527)
Q Consensus 120 l~~~~~~~-g~~~~A~~~~~~~~~~~ 144 (527)
+..++... |++++|++.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77888888 88888888888877664
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=6.4e-07 Score=68.69 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+.+.|++++|+..|+++.+..|. +...|..+..++...|++++|+..+++..+.+ +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456777778888888888888888888776443 56778888888888888888888888888765 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=5.6e-07 Score=69.06 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
.+...+.+.|++++|+..|++.....|.+...|+.+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444433333444444444444444444444444444444
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=5.3e-07 Score=72.90 Aligned_cols=100 Identities=6% Similarity=-0.121 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+..|+++++..|. +...|..+..++...|++++|+..|+++.+..|. +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 3445677888888888888888888888877763 6778888888888888888888888888876443 5667778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+..++...|++++|++.|++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887764
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=2.2e-07 Score=72.50 Aligned_cols=99 Identities=8% Similarity=-0.114 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+...|++++|+..|+.+++..|. +...+..++.++...|++++|...++++.+..|. +...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 3445667777777777777777777777766653 5667777777777777777777777777765433 5566677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..++...|++++|+..|++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=5.9e-07 Score=72.62 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...+..+...+...|++++|+..|+++.+..|. +...|..+..++...|++++|+..|++..+.. +.+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35667888999999999999999999999886544 67788899999999999999999999999876 5678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++...|++++|...|++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.2e-06 Score=83.65 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC--------------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN--------------YDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
--.-+..+...|++++|++.|..+++..+..... ..++..++..|...|++++|.+.+..+.+..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3345677788889999999988887665542211 12366677777777788777777777665311
Q ss_pred CCcCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 110 IKCGE----NLFITVIRNYGLAGRPELAVKTFLRIEKF----NVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 110 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
...+. .+...+...+...|++++|.++++..... +..+ -..++..+...+...|++++|..+++++.....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11111 11222233333456667776666655432 1111 133455556666666666666666655443211
Q ss_pred CCC----ChhhHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 181 VVP----NVFTCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 181 ~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
... ....+..++..|...|++++|..++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 000 1233444445555555555555554443
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=4.7e-07 Score=75.88 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=102.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCC--CC-----------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFS--HN-----------YDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
.+..++..+...|++++|+..|+.+++..|... .. ...+..+..++...|++++|+..++++.+..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 467788899999999999999999988766422 01 27889999999999999999999999998644
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHh
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNS 175 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~ 175 (527)
. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++...++.+++. ..|..+
T Consensus 120 ~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 120 N--NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 67789999999999999999999999999875 566778888888887777666655 444443
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=2.1e-06 Score=64.51 Aligned_cols=109 Identities=9% Similarity=-0.017 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 394 LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEG 473 (527)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 473 (527)
...+..++..+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456667777777778888887777777652 2356667777777777788888888888777643 2245667777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 474 LYESGNEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
+...|++++|.+.++++.+..+.+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888888888777766555554443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=1.6e-06 Score=67.43 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043284 391 IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLL 470 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (527)
+.+...+..++..+...|++++|...|++..... +.+...|..+..++...|++++|+..++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466777777888888888888888888777652 2346677777778888888888888888887753 2245677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.++...|++++|...++++.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888887766543
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=1.3e-06 Score=65.11 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP--NKTSFSL 469 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ 469 (527)
.+...+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++++.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 455667777888888888888888888887753 3356677788888888888888888888888753 22 4677888
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCCCCC
Q 043284 470 LIEGLYES-GNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 470 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 497 (527)
++.++.+. |++++|.+.++++....+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888 88888888888888777644
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=3e-06 Score=66.82 Aligned_cols=111 Identities=6% Similarity=-0.060 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
.+...+..++..+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46677888888888888888888888888865 555 5677778888888899999999888888753 2356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 468 SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
..++.++...|++++|...++++....+.+...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88888888899999999999988887766665555443
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.4e-06 Score=67.01 Aligned_cols=97 Identities=9% Similarity=0.095 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC--FPN----KTSFSLL 470 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 470 (527)
+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444444444444444444331 12333444444444444444444444444443210 011 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
+.++.+.|++++|.+.++++....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 445555555555555555544443
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.2e-06 Score=66.40 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+..++..+.+.|++++|+..|+++.+..|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4556666777778888888888777775443 56677777777777788888888887777765 45566777777777
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 043284 160 VQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~ 178 (527)
...|++++|+..|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776643
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=1.5e-06 Score=67.88 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC----CH-----HHHHHHHHHHHhcCCchHHHHHHHHhhhC-------
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH----NY-----DTYHSIIHKLARARAFDAVESLLTELKQN------- 107 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 107 (527)
+...+..+...|++++|+..|+++++..|..+. +. ..|..+..++.+.|++++|+..++++.+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 466788888999999999999999988886322 22 26666666677777777777776666654
Q ss_pred CCCCcChhhH----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 108 PEIKCGENLF----ITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 108 ~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
.|. +...| .....++...|++++|+..|++..+.
T Consensus 94 ~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 332 33455 55666666666666666666666543
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=1.5e-07 Score=90.48 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..++..+.++|++++|++.|+++++..|. +..+|..++.++.+.|++++|++.++++.+..|. +...+..+..+|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~ 84 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 34455667889999999999999888763 6788999999999999999999999999887544 667888889999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA--LVQNKRYDLVHLMFK 173 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 173 (527)
...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988865 3445555555555 777888888888887
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=4.4e-07 Score=68.55 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=63.4
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|++++|+..|+++++..++.+.+..++..++.++...|++++|+..|+++.+..|. +..++..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHH
Confidence 3578888888888887653222245667888888888888888888888888776444 56677778888888888888
Q ss_pred HHHHHHHHHhcC
Q 043284 133 AVKTFLRIEKFN 144 (527)
Q Consensus 133 A~~~~~~~~~~~ 144 (527)
|++.+++.....
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877653
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.46 E-value=2e-07 Score=89.27 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=95.1
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------------hhhHHHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------------ENLFITV 120 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l 120 (527)
.+++++|+..|+..+...| .....+..+...+.+.|++++|+..|+++.+..+..+. ..+|..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~---~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL---EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 3455566666555443332 24556777788888888888888888888775332111 3566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|+..|++.... .+.+...+..+..++.+.++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665 455667777777777777777777777776654 22244556666666666666
Q ss_pred hHHHHH-HHHhcc
Q 043284 201 VEGAIR-VLDEMP 212 (527)
Q Consensus 201 ~~~A~~-~~~~~~ 212 (527)
.+++.+ .+..|.
T Consensus 401 ~~~a~~~~~~~~f 413 (457)
T 1kt0_A 401 HNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 665543 344443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=1.7e-06 Score=66.55 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcC----hhhHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCG----ENLFIT 119 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~~ 119 (527)
..++..+...|++++|...|+.+++..| .+...+..++..+...|++++|...++++.+..+. ..+ ..++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555555555555555555554443 23445555555555555555555555555443111 001 334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..++...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 444455555555555555554443
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1e-05 Score=77.14 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccC----CCCC-CHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSM----GMVP-NLVT 222 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~ 222 (527)
+..++..|...|++++|.+.+..+....+..++. .+.+.+...+...|+++.|..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4456666666666666666666655432211111 12233333444566777777776665431 2112 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HH
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDR--GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVEPN--EV 291 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 291 (527)
+..+...+...|++++|..+++++... +. +....++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888888776543 11 112456777788888888888888888776532 11111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
.+..+...+...+++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566667778888888877776654
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=1.1e-06 Score=70.74 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhccc--------CCC-------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKF--------HPN-------FSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
..+...+..+.+.|++++|+..|+.++.. .|. .+.+...|..+..++.+.|++++|+..++++.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34678899999999999999999999865 111 012345677777777777777777777777777
Q ss_pred CCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 107 NPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..|. +...|..+..++...|++++|+..|++..+..
T Consensus 92 ~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 REET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5443 56677777777777777777777777777654
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=2.1e-06 Score=82.15 Aligned_cols=132 Identities=9% Similarity=-0.027 Sum_probs=107.8
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC------------CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH------------NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
.+..++..+.+.|++++|+..|+++++..|.... ...+|..+..++.+.|++++|+..++++.+..|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4677889999999999999999999987774210 0578999999999999999999999999987554
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhh
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNSRH 177 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 177 (527)
+...|..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.++.+++. .++..|..
T Consensus 350 --~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 --NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999875 556778888999999999888776 45555543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=2.1e-06 Score=79.49 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC-------------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN-------------FSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
+..++..+.+.|++++|+..|+++++..+. .+.+..+|..+..++.+.|++++|+..++++.+..|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 567888888999999999999988762110 0123445666666666666666666666666665332
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH 169 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 169 (527)
+...+..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.
T Consensus 306 --~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 --NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666654 334555555555555555544443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=7.6e-06 Score=62.75 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS---VRSLNTL 155 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 155 (527)
.+..++..+...|++++|...|+++.+..|..+ ....+..+..++...|++++|+..|+++.+.. +.+ ..++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 455667777888888888888888877544321 11467777888888888888888888887764 333 5667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++...|++++|...|+.+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=6.3e-06 Score=66.29 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEK--------G---------VEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+...+..+.+.|++++|+..|++.... . -+.+...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 0 011235677888888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 458 KGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 458 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
.+ +.+...+..++.++...|++++|...|+++....|.+...+...+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 53 2356778888999999999999999999998888766634444444
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.8e-06 Score=83.00 Aligned_cols=124 Identities=6% Similarity=-0.004 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+..++..+.+.|++++|++.|+++.+..|. +...+..+..++.+.|++++|++.+++..+.. +.+..++..+..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455667889999999999999986444 67889999999999999999999999999986 567889999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HHcCCChHHHHHHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA--LCKKDDVEGAIRVLD 209 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 209 (527)
..|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988762 2234455555555 888899999999998
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=1.8e-06 Score=69.27 Aligned_cols=134 Identities=12% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC---HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC---C-CcChh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN---YDTYHSIIHKLARARAFDAVESLLTELKQNPE---I-KCGEN 115 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~~ 115 (527)
.+..++..+...|++++|+..++.+++..+..... ..++..+...+...|++++|...++++.+..+ . .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34566677777777777777777765443211111 13566666667777777777777766654311 0 00123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFN----VQ-RSVRSLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
.+..+...+...|++++|.+.+++..+.. .+ ....++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555666666666666666666654321 00 012334445555555555555555555443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=1e-06 Score=66.54 Aligned_cols=88 Identities=8% Similarity=-0.132 Sum_probs=68.0
Q ss_pred hcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 90 RARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV 168 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (527)
..|++++|+..|+++.+..+ .+.+..++..+..++...|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35788899999999887521 12255678888889999999999999999998876 56678888888999999999999
Q ss_pred HHHHHHhhhc
Q 043284 169 HLMFKNSRHK 178 (527)
Q Consensus 169 ~~~~~~~~~~ 178 (527)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888766
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=5.1e-06 Score=66.57 Aligned_cols=131 Identities=9% Similarity=-0.033 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGS--IPS----LLTYNTLIAGMCESAELTEAGRLWDDMVEKGV-EPN----VF 430 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~ 430 (527)
++..+...+...|++++|...+++..... .++ ...+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34445555556666666666665541110 011 13566677777777777777777777654310 011 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFP-NKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
.+..+...+...|++++|.+.+++.++. +..+ ....+..++..+...|++++|.+.++++.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777888888888888777642 1111 123466777778888888888888887654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=3e-06 Score=77.47 Aligned_cols=94 Identities=10% Similarity=-0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH---
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR--- 507 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~--- 507 (527)
.|..+..++.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...|+++.+..+.+...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56677777777788888888887777643 22556677777778888888888888887777666555555544432
Q ss_pred HHhchhhhHHHHHHHHhh
Q 043284 508 IVSDLDSGAGALDELLVK 525 (527)
Q Consensus 508 ~~~~~~~a~~~~~~~l~~ 525 (527)
..+..+.+...++++++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 235666666677666654
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=2.2e-06 Score=78.38 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+.+.|++++|+..|+++++..|. ... +...+++.++...+ ....|..+..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~----~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGD----DFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCH----HHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----chh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 456677777889999999999988766542 111 11222233322211 11256777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH-HHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA-LCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 202 (527)
+.+.|++++|+..+++.++.. +.+..++..+..+|...|++++|...|++.... .+.+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 456777778888888888888888888877654 12234445545444 23445667
Q ss_pred HHHHHHHhcccC
Q 043284 203 GAIRVLDEMPSM 214 (527)
Q Consensus 203 ~A~~~~~~~~~~ 214 (527)
++...|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777777777654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=8.4e-05 Score=72.76 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=131.4
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK----------IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA- 408 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 408 (527)
..++|++.++.+...++. +..+|+.-..++...|+ ++++...++.+....+.+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 346778888888877543 55566665666666666 889999999997778889999999999998888
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 043284 409 -ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG-NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYES--------- 477 (527)
Q Consensus 409 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 477 (527)
+++++++.++++.+... -+..+|+.-..++.+.| .++++++.++++++... -+...|......+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 77999999999998742 36788888888888888 89999999999988653 3667788777776663
Q ss_pred -----CChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 478 -----GNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 478 -----g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
+.++++.+.++++....|.+...|..+...+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 5679999999999999999999998865533
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=1.3e-05 Score=62.68 Aligned_cols=107 Identities=10% Similarity=-0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-------------VFTYNMLIQGFCKIGNAKEGIRILEEMLDK---- 458 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 458 (527)
.+......+...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455566666777777777777777754 233 237888888889999999999999998873
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 459 -GCFPNK-TSF----SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 459 -~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
.+.|+. ..| ...+.++...|++++|+..|+++.+..|.|...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 115765 467 8889999999999999999999988776555444433
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=1.2e-05 Score=74.46 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCC--------------CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPE--------------IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNV 145 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 145 (527)
.+..+...+.+.|++++|+..|+++.+..+ .+....+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 567778888889999999999988876200 11133456666666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 146 QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
+.+..++..+..+|...|++++|+..|++.... .+.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666554 122344444455554444444443
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=5.7e-06 Score=78.97 Aligned_cols=127 Identities=6% Similarity=-0.038 Sum_probs=81.5
Q ss_pred HHhcCChhHHHHHHHHhcccCC-----CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCc-ChhhHHH
Q 043284 51 IFRQQNLDLALQIFHYAGKFHP-----NFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PEIKC-GENLFIT 119 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~ 119 (527)
+..+|++++|+.+++++++... ..+....+++.++..|...|++++|..+++++++. ++..| ....++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578888888888877764322 21223456778888888888888888888877654 23222 2345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF-----NVQ-R-SVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+...|...|++++|+.++++..+. |.. | ...+...+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887776542 311 1 122344455566666677777777766654
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=0.00016 Score=70.77 Aligned_cols=138 Identities=5% Similarity=-0.123 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC-ChHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD-DVEGAIR 206 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 206 (527)
++++++.++.+.+.+ +.+..+|..-..++.+.| +++++++.++++.+. .+-+..+|+....++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 455555555555544 344555555555555555 445555555555554 2224445555444445555 5555666
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR--------------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
.++++.+..+ -|...|+.....+.+. +.++++++.+++++... +-+...|..+...+.+.++.+
T Consensus 166 ~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 6665555442 2455555554444432 34566777777766654 335666666665555555533
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=9.7e-05 Score=57.27 Aligned_cols=111 Identities=11% Similarity=-0.039 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIR 450 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 450 (527)
++++|...|++......++.. +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 456666666666333333332 5556666666677777777776653 45566666666665 677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYE----SGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 495 (527)
+|++..+.| +...+..|...|.. .++.++|.++++++.+.+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777764 55666667777776 6777777777777776654
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.7e-06 Score=61.91 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
.++..+...|++++|+..|+++++..|. +...+..++.++...|++++|++.++++.+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444433331 333444444444444444444444444443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=4.8e-06 Score=61.86 Aligned_cols=99 Identities=6% Similarity=-0.044 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS------VR 150 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~ 150 (527)
+...+..++..+...|++++|++.|+++.+..|. +...+..+..++...|++++|++.+++..+.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 4668889999999999999999999999986554 67889999999999999999999999999875 334 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+..+..++...|+++.|...++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 107 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELPEG 107 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhHHH
Confidence 7888888999999988888877766543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=3e-05 Score=58.02 Aligned_cols=81 Identities=10% Similarity=-0.107 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHH
Q 043284 58 DLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTF 137 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 137 (527)
+.|+..|+.+++..| .+...+..++..+...|++++|+..|+++.+..|. +...+..+..++...|++++|+..|
T Consensus 2 ~~a~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGT---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457788888877666 46778888888888899999999999888876443 5667888888888889999999888
Q ss_pred HHHHhc
Q 043284 138 LRIEKF 143 (527)
Q Consensus 138 ~~~~~~ 143 (527)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=1.8e-05 Score=61.72 Aligned_cols=96 Identities=13% Similarity=-0.036 Sum_probs=75.6
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCch----------HHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFD----------AVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.+.+++++|++.++.+++.+|. +...|..+..++...++++ +|+..|+++.+..|. ...+|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHHHHH
Confidence 4667899999999999988884 8889999999998887764 899999998887554 667788888
Q ss_pred HHHHhcC-----------ChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 122 RNYGLAG-----------RPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 122 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
.+|...| ++++|++.|++.++.+ |+...|..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~ 129 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 8887764 7888888888888763 55444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=3.2e-05 Score=57.82 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=64.8
Q ss_pred hHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 95 DAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKN 174 (527)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (527)
+.|+..|+++.+..|. +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567778888776443 66788888888889999999999999888875 45677888888888889999999988888
Q ss_pred hhhc
Q 043284 175 SRHK 178 (527)
Q Consensus 175 ~~~~ 178 (527)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=8.2e-05 Score=71.00 Aligned_cols=125 Identities=8% Similarity=-0.067 Sum_probs=66.7
Q ss_pred HHhcCChhHHHHHHHHHHhc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc----CC-CCCC-hhhHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKF-----NV-QR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHK----FK-VVPN-VFTCNI 190 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~ 190 (527)
+..+|++++|+.++++.++. |. .| ...+++.+...|...|++++|..++++.... +| ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555432 10 01 1345666666666666666666666654422 11 1222 345667
Q ss_pred HHHHHHcCCChHHHHHHHHhccc-----CCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPS-----MGM-VPN-LVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
|...|...|++++|+.++++..+ .|. .|+ ..+.+.+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543 121 111 22334444555556666666666666544
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.92 E-value=1.1e-05 Score=58.67 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
..+..++..+...|++++|+..|+++++.+|. +..+|..++.++...|++++|++.|+++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666655553 344566666666666666666666665554
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.90 E-value=6.9e-07 Score=81.39 Aligned_cols=407 Identities=10% Similarity=0.078 Sum_probs=241.7
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
..|..|..|+.+..+.++..+|++.|-++ .|+..|..++....+.|.+++-+..+..+.+... ++.+=.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k---e~~IDt 120 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVET 120 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC---STTTTH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccHH
Confidence 44567888999999999999999988665 2455888999999999999999999998877522 333445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC------------------
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK------------------ 180 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------ 180 (527)
.++-+|++.++..+-.+.+ . .|+..-...+.+-|...|.++.|.-+|..+..-..
T Consensus 121 eLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999877654433 1 46666677888889999999999888877542111
Q ss_pred -CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 181 -VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
-..++.+|..+-.+|...+.+.-|.-+--.++-. ......++..|-..|.+++-+.+++..+... ......|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 1235678888888888888777665544333321 1112234555667777777777777766432 33566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHccCCHHHHHHHHH-------------HHHHc
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEMEDN-GVEP------NEVTYGVMIEAFCKGKKSGEARNLLD-------------DMLQR 319 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-------------~~~~~ 319 (527)
-|.-.|++- +.++..+.++..-.+ +++. ....|..++-.|.+-.++|.|....- ++...
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 346 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 777777664 344444444332211 1111 23456667777777677665543211 11000
Q ss_pred CCCCCHHhH---------------HHHHHHHHhcCCHhHHHHHHHHHHh----------CCCCCCHhhHHHHHHHHHHcC
Q 043284 320 KYVPSSALC---------------CKVIDLLCEEGKVEDACELWKRLLR----------KNCMPDNAISSTIIHWLCKEG 374 (527)
Q Consensus 320 ~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~ 374 (527)
..+...| +.++.++...=|..++.+++.+.-. .....+..+-.++-..|....
T Consensus 347 --VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 347 --VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp --CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred --cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 1122233 3333343333444444444443211 011224445566667777777
Q ss_pred CHHHHHHHHHH------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 375 KIWEAKKLFDE------------FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 375 ~~~~a~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+++.-+...+. +++ .+-...-..-+..|-++++|++++.+.++ ...|.-.|.....+
T Consensus 425 Dy~~LR~SId~ydNFD~i~LA~rLEk--HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S 493 (624)
T 3lvg_A 425 DYQALRTSIDAYDNFDNISLAQRLEK--HELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASES 493 (624)
T ss_dssp CCHHHHHTTSSCCCSCTTHHHHHHHT--CSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTC
T ss_pred hHHHHHHHHHHhccccHHHHHHHHhh--CchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHc
Confidence 76655443332 111 12222333444566677777777655422 11233334455677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKV 486 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 486 (527)
|+.+-|.++++-.++.| +...|...+-.|...=+++-+.++
T Consensus 494 ~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 494 KDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 78888888888877754 455666666666666666665544
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=0.00011 Score=52.02 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..+...+...|++++|...|+++.+..|. +...+..+..++...|++++|+..+++..+.. +.+..++..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34444445555555555555555555443222 33444455555555555555555555554443 2334444444444
Q ss_pred HH
Q 043284 159 LV 160 (527)
Q Consensus 159 ~~ 160 (527)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.00042 Score=53.58 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043284 167 LVHLMFKN 174 (527)
Q Consensus 167 ~a~~~~~~ 174 (527)
+|..+|++
T Consensus 13 ~A~~~~~~ 20 (138)
T 1klx_A 13 KAIQYYVK 20 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=0.00013 Score=51.47 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+...|++++|+..|+++++..| .+..++..+...+...|++++|...|+++.+..|. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 344555566666666666666666655544 24555666666666666666666666665554332 3344444444
Q ss_pred HHH
Q 043284 123 NYG 125 (527)
Q Consensus 123 ~~~ 125 (527)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=0.00011 Score=57.39 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=64.4
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 89 ARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP----------ELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
.+.+.+++|++.+++..+..|. +...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 3456688888888888876554 667777777777777665 47888888877765 4566777777777
Q ss_pred HHhcC-----------CHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 159 LVQNK-----------RYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 159 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
|...| ++++|++.|++.... .|+...|
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHH
Confidence 77664 566666666666653 4544444
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00013 Score=52.86 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
.++.++..++..+...|++++|+..|+++.+..|. +...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666677777777777777777777776665443 445666666777777777777777766654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.65 E-value=0.00072 Score=60.74 Aligned_cols=30 Identities=10% Similarity=-0.104 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL 88 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (527)
+..+|+.+|+++++.+|+ ...+|..+..++
T Consensus 214 ~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~ 243 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPE---FTYARAEKALVD 243 (372)
T ss_dssp HHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 347788888888887775 344555444444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.00034 Score=50.32 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhH
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNKT-SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSW 501 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 501 (527)
..+...|++++|+..|+++++.. +.+.. .+..++.++...|++++|.+.++++.+..+.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555555432 11334 455555555555666666666665555554444333
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.45 E-value=0.00085 Score=47.44 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhcCC---hhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 40 QRLYPKRLVSMIFRQQN---LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
++..+..++.++...++ .++|..+++++++.+|. ++.+...++..+...|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444455555543333 46666666666655552 5555666666666666666666666666554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.00035 Score=65.47 Aligned_cols=89 Identities=7% Similarity=-0.006 Sum_probs=47.3
Q ss_pred cCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCcC-hhhHHHHHH
Q 043284 54 QQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PEIKCG-ENLFITVIR 122 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~ 122 (527)
.|++++|..++++++... +..+....+++.++..|...|++++|+.+++++++. ++..|+ ...++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666655321 211112345666666666666666666666665543 222222 234555666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 123 NYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~ 142 (527)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666655543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.0022 Score=57.68 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.+..+|..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.++++....|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3455666666655666677777777777777754 66666666777777777777777777777776653
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.0012 Score=47.33 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYD-TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
...+..+.+.|++++|+..|+.+++..| .+.. .+..++.++...|++++|++.|+++.+..|. +...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~---- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQAR---- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH----
Confidence 3567788899999999999999988776 3677 8899999999999999999999999886554 3333311
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043284 124 YGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~ 142 (527)
+.+.++...|++...
T Consensus 75 ----~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMY 89 (99)
T ss_dssp ----HHHHHHHHHHCCTTH
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 445556666555443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.0014 Score=61.48 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQN-----PEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+++.++..|...|++++|+.+++++... ++..|+ ...++.+...|...|++++|+.++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444555555555554444432 111111 123344444444444444444444443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.0069 Score=42.68 Aligned_cols=70 Identities=14% Similarity=0.028 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.|...+..+..++...++ .++|..++++++... +-+......++..+.+.|++++|+..|+++.+..++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777776654444 678888888888753 224566777788888888888888888888777765
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.09 E-value=0.0047 Score=44.76 Aligned_cols=74 Identities=8% Similarity=-0.046 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG------CFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSW 501 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 501 (527)
+..-+..+...+...|++..|..+|+++++.- -.+....+..++.++.+.|++++|...++++.+..|.+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566677777777777777777776421 123456677788888888888888888888877776655443
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.96 E-value=0.12 Score=44.52 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 043284 410 LTEAGRLWDDMVEKGVEPN---VFTYNMLIQGFCK-----IGNAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYES-G 478 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 478 (527)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|+++++. .| +..++..++..+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 56777888888876 666 5678888888888 49999999999999985 46 367777888888884 9
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043284 479 NEGEVGKVVSMATASGS 495 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~ 495 (527)
+.+++.+.++++....+
T Consensus 255 d~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 255 NRAGFDEALDRALAIDP 271 (301)
T ss_dssp CHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 99999999999988765
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0042 Score=58.32 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=12.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
+++.|...|...|++++|+.++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555555555555555444
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0019 Score=60.48 Aligned_cols=86 Identities=9% Similarity=-0.091 Sum_probs=49.4
Q ss_pred cCCchHHHHHHHHhhhC-----CCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CCC-HHHHHHHHH
Q 043284 91 ARAFDAVESLLTELKQN-----PEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKF-----NV-QRS-VRSLNTLLN 157 (527)
Q Consensus 91 ~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 157 (527)
.|++++|+.++++.++. .+..| ...+++.++.+|...|++++|+.++++.+.. |. .|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777766543 22211 2245666777777777777777777666532 21 111 234556666
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 043284 158 ALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~ 176 (527)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665544
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.87 E-value=0.028 Score=42.64 Aligned_cols=116 Identities=9% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHH----HHHHH-H--HHHccCCHHHHHHHHHHHHHC
Q 043284 392 PSLLTYNTLIAGMCESAEL------TEAGRLWDDMVEKGVEPNVFT----YNMLI-Q--GFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~~----~~~l~-~--~~~~~g~~~~A~~~~~~~~~~ 458 (527)
.|..+|-..+...-+.|++ +..+++|++.... ++|+... |..+- . .+...+|.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666555666 6666777766664 4554211 11100 0 123347888888888888754
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 459 GCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 459 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
+-.- ...|...+..-.+.|+...|++++.++...++.+.......+..+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 2222 6667777777788888999999998888888877777777777554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.015 Score=44.72 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESA---ELTEAGRLWDDMVEKGVEP--NVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
++..+...+..++++.+ +.++++.+|+...+.. .| +...+-.+.-++.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444445555555544 3335555555554432 12 123333344444555555555555555554
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.12 Score=40.85 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-.......|+++.|.++.+.+ .+...|..+.......|+++-|.++|.++.. +..+.-.|
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly 70 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLY 70 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHH
Confidence 34455567788888888887766 3667888888888888888888888887753 34455556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
...|+.++-..+-+.....|- ++.....+...|+++++.++|.+.... |.. .......|..+.|
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~----~eA------~~~A~t~g~~~~a 134 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL----PLA------YAVAKANGDEAAA 134 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH----HHH------HHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh----HHH------HHHHHHcCcHHHH
Confidence 667777776666666555441 344455566678888888877655321 111 1112224666677
Q ss_pred HHHHHhc
Q 043284 205 IRVLDEM 211 (527)
Q Consensus 205 ~~~~~~~ 211 (527)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.82 E-value=0.0084 Score=43.38 Aligned_cols=67 Identities=4% Similarity=-0.072 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCC-----CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNP-----EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...+..++..+...|++..|..+|+.+.+.. +......++..+..++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455556666666666666666666555431 11123445566666666666666666666666654
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.051 Score=56.12 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=83.0
Q ss_pred HHhcCCchHHHH-HHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 88 LARARAFDAVES-LLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 88 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
....+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.-. .-.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 345667777655 432211 02223556666677777777776552111 1123445667777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++.+..
T Consensus 670 ~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 670 LARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 777765443 2556777777777777777777777776543 233444455566666555554444
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
...| -++....+|.+.|++++|++++.+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433 122233344445555555555443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.014 Score=44.96 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG---NAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
...+.+-|.+..+.|. ++..+...+..++++++ +.++++.++++..+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666553 68888888999999988 6679999999999864 24 3456778889999999999999
Q ss_pred HHHHHHHhCCCCCh
Q 043284 485 KVVSMATASGSVES 498 (527)
Q Consensus 485 ~~~~~~~~~~~~~~ 498 (527)
++++.+.+..|.+.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999887544
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.094 Score=54.13 Aligned_cols=46 Identities=11% Similarity=-0.066 Sum_probs=26.6
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666554321 24556666666666666666666666655
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.62 E-value=0.13 Score=38.09 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG 424 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (527)
.+..+...|.-++..+++..+....+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444444433344444444444444444444444444444444444
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.50 E-value=0.16 Score=37.67 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+.-.|..++..++..+... +.+..-++.++.-....-+-+-..+.++.+-+.+++. ..|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 4456888888888888877 3566667777777777777777777777776654432 3455555
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
....+-.+-. +.......+.....+|.-++-.+++..++.. .+|++.....+..+|.+.|+..++.+++.++-+
T Consensus 80 Vi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 5555554432 4455666677777788888888888776543 366777777788888888888888888888877
Q ss_pred CCCC
Q 043284 284 NGVE 287 (527)
Q Consensus 284 ~~~~ 287 (527)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7753
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.31 Score=38.50 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
.....+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHH
Confidence 34556778888888877665 2567788888888888888888888887642 345555666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMA 490 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (527)
...++-+.....| -++.....+...|++++++++|.+.-. .|.... .....|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 6666655555443 144555566777888888888755322 111111 122246677777776664
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.21 E-value=0.52 Score=40.66 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 043284 236 IENAKRVFGDILDRGWVPD---ATTYTVLMDGYIKL-----GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG-KKS 306 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 306 (527)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666665 333 45677777777773 77788888887777764322366666677777664 777
Q ss_pred HHHHHHHHHHHHcCCC
Q 043284 307 GEARNLLDDMLQRKYV 322 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~ 322 (527)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776555
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.98 E-value=1.7 Score=44.49 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
|..++.++.+.++.+.+.++|+.+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556666666667777776654
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.80 E-value=5.7e-06 Score=75.54 Aligned_cols=223 Identities=11% Similarity=0.040 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
+..|..++.+..+.++..+|++.|- .. . |+..|..++.+..+.|++++-+..+.-..+.. .++.+=+.++-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA--~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KA--D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CC--S---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hC--C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3455555555555555555443321 11 1 33345555555555555555555554444332 22223334555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
+|++.+++.+..+++ ..||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++.
T Consensus 125 ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 555555544433222 124444444555555555555555554443332 222333344455555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
.|.+.- .+. .++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|-..|-+++.+.+++.-+
T Consensus 188 ~AVdaA---rKA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGA---RKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTT---TTC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHH---Hhc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 444321 111 25566766666777776666554443333211 1112234455666677777777666655
Q ss_pred HcCCCCCHHhHHHHHHHHHhc
Q 043284 318 QRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~ 338 (527)
.. -......|+.+.-.|++-
T Consensus 257 gl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS
T ss_pred CC-CchhHHHHHHHHHHHHhc
Confidence 32 223455666666666554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.75 E-value=0.073 Score=39.33 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 043284 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE---GIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 411 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
..+.+-|......|. ++..+-..+.+++.++.+... ++.++++..+.+ .| .......|+-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444433332 455555556666666665444 666666665542 12 22334456666677777777777
Q ss_pred HHHHHHhCCCCC
Q 043284 486 VVSMATASGSVE 497 (527)
Q Consensus 486 ~~~~~~~~~~~~ 497 (527)
+++.+.+..|.+
T Consensus 96 ~~~~lL~~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 777766665533
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.56 E-value=0.19 Score=38.22 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (527)
++.++|.++|+.+....-.. ...+....+.-.+.|+...|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55555555555554432221 334444444445556666666666655555433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.40 E-value=0.18 Score=37.29 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTE---AGRLWDDMVEKGVEP--NVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 448 (527)
.....+.+-|........++..+-..++.++++.++... ++.+++.+...+ .| .....-.+.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555555433334667777777777777766555 777777777652 23 234445566677888888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 043284 449 IRILEEMLDKGCFPNK 464 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~ 464 (527)
.+.++.+++. .|+.
T Consensus 94 ~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 8888888873 4643
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=1.9 Score=40.54 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHH
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDR--GWVPD---ATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGVEPN--EVT 292 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 292 (527)
..|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44555666666666666666665432 11111 23444455666666666666666665431 111111 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445555566666666666655543
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.30 E-value=0.38 Score=33.45 Aligned_cols=69 Identities=6% Similarity=0.127 Sum_probs=55.2
Q ss_pred ccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 441 KIG-NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 441 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
+.. |.-+..+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-+..+..+...+|..++..+.
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 344 566777788888888888999999999999999999999999999887777666667888887543
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.27 E-value=0.76 Score=49.26 Aligned_cols=169 Identities=9% Similarity=0.030 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
...++..+...+.++.|.++..+. +.++..-..++.++...|++++|.++|+++... ...+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~--~~~~~~l~------ 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV--LYSHTSQF------ 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS--CTTCCCSC------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hcccchhh------
Confidence 445566666677777777766655 124444556667777777777777777766432 11110000
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-C--hhhHHHHHHHHHcC
Q 043284 124 YGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP-N--VFTCNILIKALCKK 198 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~ 198 (527)
..... +..+.... ...-..-|..++..+.+.|.++.+.++-+......+..+ + ...|..+.+.+...
T Consensus 880 ----~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 ----AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ----SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 11111110 012234577788888888888888877766655422111 1 22577888899999
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
|++++|...+-.+..... -......++...+..|..+
T Consensus 952 ~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 999999999887765432 3456666666666655543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=3.1 Score=39.02 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCChhHHHHHHHHhcc---cCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 54 QQNLDLALQIFHYAGK---FHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
.|++++|++.+-.+.+ ...+..........++..|...|+|+...+.+..+.+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3667777766543322 22334445667777888888888888777777666554
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.31 E-value=0.74 Score=42.40 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=69.3
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHH-HHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAV-ESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
..|+.+.|...++.++..-.|....... ...|-.. ...+++.. ..+...++..+...|+++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~----------~~~w~~~~r~~l~~~~--------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVEDK--------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHHHH--------HHHHHHHHHHHHHTTCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC----------chhHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCHH
Confidence 4589999999999987765442211000 0111111 11122111 113345566666777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----cCCCCCChhhHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH----KFKVVPNVFTCN 189 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 189 (527)
+++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.. ..|+.|...+-.
T Consensus 189 ~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 189 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7777777776654 56667777777777777777777777776543 346777665433
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.23 E-value=0.8 Score=33.81 Aligned_cols=66 Identities=5% Similarity=0.129 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 444 NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
|.-+..+-++.+...++.|++.+....+++|.|.+++.-|.++++-+..+..+...+|..++..+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 133 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHh
Confidence 455677777888888888999999999999999999999999999988777777777888887543
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.90 E-value=6.6 Score=40.33 Aligned_cols=266 Identities=13% Similarity=0.069 Sum_probs=147.9
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCHHhHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGDIENAKRVFGDILDRGW-------VPDATTYTVLMD 263 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 263 (527)
-+.+..|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34667888899999998876532112322 223333445566666677877777665321 011112223333
Q ss_pred HHHhcCC-hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHhc
Q 043284 264 GYIKLGR-LTDAVKVMDEMEDNGVEPNE--VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI--DLLCEE 338 (527)
Q Consensus 264 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 338 (527)
+.+-.|. -+++.+.+..+.... .+.. ..-..+...+...|+.+....++..+.+.. +..+...+. -++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333342 346666666665532 1111 112233444567788888888888776532 233333333 334467
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAIS--STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+......++.....+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 88888888888877642 2222222 23445677888988888888888655444555444455555666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNA-KEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 77666542 34333333333344444443 678888888875 3555543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.88 E-value=0.74 Score=35.74 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-------HHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-------YDTYHSIIHKLARARAFDAVESLLTELK 105 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (527)
-.+..-+..+...|.++.|+-+.+.++..... .++ ..++..++.++...|+|.+|...|++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555555555555555555554322110 111 1133444444455555555555555543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.51 E-value=0.48 Score=36.77 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------ENLFITVIRNYGLAGRPELAVKTFLRIEKFN----- 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 144 (527)
+..++..-+..+...|.++.|+-+...+.......++ ..++..+..++...|++..|...|++.++..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3446777788889999999999888876654222222 1256677889999999999999999863321
Q ss_pred -------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 145 -------------------VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 145 -------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
...+.+.-..+..+|.+.+++++|+.+++.+..+
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1112245566889999999999999999998765
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.49 E-value=1.2 Score=33.14 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNA---KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.|+..+--.+.+++.++.+. .+++.++++..+.+..-....+..|+-++.+.|++++|.++.+.+.+..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 45666666677777776654 4577777777765411124556677778888888888888888887776544
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.52 E-value=2.6 Score=31.74 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNA---KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.|+..+-..+.+++.++.+. .+++.++++....+..-.......|+-++.+.|++++|+++.+.+.+..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45555555566666665543 3466666666653311123344556666777777777777777776666543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.49 E-value=5.2 Score=35.13 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHH----HHHHHHhcCCCCCHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVK----TFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~ 156 (527)
|..+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445566777888888777654322 2334455444443 344445556677777777777
Q ss_pred HHHHhcCCH-----HHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 157 NALVQNKRY-----DLVHLMFKNSRHKFK-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 157 ~~~~~~g~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
..+.....- +-..+.+....+..+ ..-++.....+...|.+.|++.+|...|-.-.. -|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHH
Confidence 666553311 111122222221111 123566777788888888888888887752211 1344555555444
Q ss_pred Hhc---CChHHHHH
Q 043284 231 VWR---GDIENAKR 241 (527)
Q Consensus 231 ~~~---~~~~~a~~ 241 (527)
... |...++--
T Consensus 176 ~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 176 LCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHTTCCCHHHHHH
T ss_pred HHhcCCCCcchHHH
Confidence 444 55554433
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.71 Score=46.18 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
-+..-|..|+....|.+++++|.+.|+..... .-++..|..|+..+.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~ 657 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYL 657 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 34455777888888888888888888887654 356667777777443
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.78 E-value=1.9 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
|.-+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566666777777777777777777777777777777777777774433334445555543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.64 E-value=0.84 Score=42.03 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++. +.|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444444455555554444444331 2234444455555555555555555544443 2355554444
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.49 E-value=1 Score=45.12 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=21.9
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 372 KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDD 419 (527)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (527)
..|+++-|+.+-++.....|.+..+|..|+.+|...|+++.|+-.+..
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 344444444444444333334444444444444444444444444433
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=1.1 Score=42.03 Aligned_cols=102 Identities=9% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC-CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCHHH--H
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF---NVQRSVRS--L 152 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 152 (527)
.++..++..+.+.|+++.|.+.|.++... .+...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36788888999999999999999988764 222334567888899999999999999998887543 22233221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 153 NTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
..-+..+...+++..|...|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1222334457889998888877766544
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.61 E-value=21 Score=38.35 Aligned_cols=145 Identities=9% Similarity=-0.001 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC------------
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN------------ 219 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------------ 219 (527)
...++..+...+..+-+.++..... .+...--.+..++...|++++|.++|.+... |+..+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 3345666777777777766554332 2334444566777788888888888876532 11111
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 220 -----------LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA----TTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 220 -----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 122444555555555555555555544433211111 13455555555556666665555555443
Q ss_pred CCCCCHHHHHHHHHHHHccCC
Q 043284 285 GVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~ 305 (527)
. .-......++...+..|.
T Consensus 968 ~--~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 968 P--LKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp S--SCHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHHHHhCCC
Confidence 2 123344444444444433
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.31 E-value=8.9 Score=33.66 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES---AELTEAGRLWDDMVEKGVEPNVFTYNM 434 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ 434 (527)
-++.....+...|.+.|++.+|+..|-.. ...+...+..++.-+... |...++--++-+ .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 47777888888888889888888777521 112345555555544443 433332111111 1
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 043284 435 LIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
++ .|.-.|+...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 12 2445678888888777664
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.80 E-value=3.9 Score=30.27 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
|.-+..+-++.+...+..|++.+....+++|-+.+++..|.++|+-++....+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344566666777777777788888888888888888888888888775444444555665554
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.72 E-value=12 Score=33.07 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKV----MDEMEDNGVEPNEVTYGVMI 297 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 297 (527)
+|.++..-|.+.+++++|++++-.-. ..+.+.|+...+-++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445556777777777777654322 123344544444333 34445556677776666666
Q ss_pred HHHHccCCHH-HHHHHHHHHHH----cC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 043284 298 EAFCKGKKSG-EARNLLDDMLQ----RK--YVPSSALCCKVIDLLCEEGKVEDACELW 348 (527)
Q Consensus 298 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (527)
..+......+ .-..+++.+.+ .| ..-++.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665443311 11222222221 11 2334555555666666666666665554
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.32 E-value=15 Score=33.57 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHH--
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPD-----ATTYTVLMDGYIKLGRLTDAVKVMDEMEDN--GVEPNEVTYGV-- 295 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 295 (527)
.++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+.+.... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777788888888777777765311111 233445556777778888888777766532 12223222211
Q ss_pred --HHHHHH-ccCCHHHHHHHHHHHH
Q 043284 296 --MIEAFC-KGKKSGEARNLLDDML 317 (527)
Q Consensus 296 --l~~~~~-~~~~~~~a~~~~~~~~ 317 (527)
-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122345 6778887777666553
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.84 E-value=7.1 Score=36.39 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH--
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN-- 189 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 189 (527)
......++..|.+.|+++.|.+.+.++...- ...-...+..+++.+...+++..+...+++........++....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3467789999999999999999999998752 233467788899999999999999999998765433333332222
Q ss_pred --HHHHHHHcCCChHHHHHHHHhccc
Q 043284 190 --ILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 190 --~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
.-+..+...+++..|...|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 122334567899999888877654
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.75 E-value=6.9 Score=29.05 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
+.-++.+.|++++|.+..+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.44 E-value=17 Score=33.21 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
+...++..|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777777777777666543
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.21 E-value=1.2 Score=37.75 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=74.2
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhc
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLA 127 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 127 (527)
..+.+.|++++|++....-++.+| .|...-..+++.++-.|+|++|.+-++.+.+..|. .+....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P---~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 456788999999999998888887 58888888999999999999999999988876332 1122233333332
Q ss_pred CChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhc
Q 043284 128 GRPELAVKTFLRIEKFNV-----QRSVRSLNTLLNALV--QNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 178 (527)
...=.++..-+- .....-...++.++. ..|+.++|..+-....+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222111 112223344444444 358888888777776543
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.95 E-value=16 Score=32.37 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHH----HHHHhcCCCCCHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTF----LRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~ 156 (527)
|..+..-|.+.+++++|++++..-. ..+.+.|+...|-++. +-+.+.+++++......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555677788888777655332 2233344444433332 4444456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHH----hhhcC-CCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 157 NALVQNKRYD-LVHLMFKN----SRHKF-KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 157 ~~~~~~g~~~-~a~~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
..+.....-+ .=..+++. -.+.. ...-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665554311 11112222 11110 122356667777888888888888888773 2 2223345665555555
Q ss_pred HhcCChHHH
Q 043284 231 VWRGDIENA 239 (527)
Q Consensus 231 ~~~~~~~~a 239 (527)
...+...++
T Consensus 178 ~~~~~~~e~ 186 (336)
T 3lpz_A 178 YKQDESHTA 186 (336)
T ss_dssp HHTSCGGGH
T ss_pred HHhcCCccH
Confidence 554444433
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.40 E-value=8.9 Score=28.90 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 043284 391 IPSLLTYNTLIAGMCESAEL---TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK 464 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 464 (527)
.++..+--.+..++++..+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 46666666677777776543 35677777777653222344455566677888888888888888887 34654
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.94 E-value=34 Score=33.54 Aligned_cols=116 Identities=11% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHW----LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
.+.+.|...+....+.. ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCHHHHH
Confidence 37788988888876543 2233333222222 223343455666666653222 33333444444555779999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..|+.|..... ......-.+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988865311 2333345566777888999999999998875
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.53 E-value=9.1 Score=26.61 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+... .||...|..| +-.+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 345555555555554422 11111222334566677777766655432 4666555444 345667666666666
Q ss_pred HHHHhCCCCC
Q 043284 488 SMATASGSVE 497 (527)
Q Consensus 488 ~~~~~~~~~~ 497 (527)
..+-.++.|.
T Consensus 93 ~~la~sg~p~ 102 (116)
T 2p58_C 93 NRLARSQDPR 102 (116)
T ss_dssp HHHTTCCCHH
T ss_pred HHHHhCCCHH
Confidence 5555555443
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.38 E-value=8 Score=32.87 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
..+.|++++++.....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345566666666666655555666666666666666666666666666665544
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.61 E-value=8.8 Score=26.63 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+... .||...|..| +-.+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 345555555555554422 11111222334566677777766554432 4666555444 345667777776666
Q ss_pred HHHHhCCCCC
Q 043284 488 SMATASGSVE 497 (527)
Q Consensus 488 ~~~~~~~~~~ 497 (527)
..+-.++.|.
T Consensus 92 ~~la~sg~p~ 101 (115)
T 2uwj_G 92 AGLGGSSDPA 101 (115)
T ss_dssp HHHHTCSSHH
T ss_pred HHHHhCCCHH
Confidence 5555555443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.23 E-value=50 Score=32.36 Aligned_cols=79 Identities=8% Similarity=-0.097 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 043284 115 NLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA 194 (527)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (527)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=..... .......++..
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~ 145 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSV 145 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHH
Confidence 3334555566666666665554432 1445555556666677777766665555554333122 23344555555
Q ss_pred HHcCCC
Q 043284 195 LCKKDD 200 (527)
Q Consensus 195 ~~~~~~ 200 (527)
+.+.|.
T Consensus 146 ~~~~g~ 151 (618)
T 1qsa_A 146 WRASGK 151 (618)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 554443
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.94 E-value=29 Score=36.24 Aligned_cols=134 Identities=7% Similarity=-0.015 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
.-.++..+...|.++-|+++..+. +.++..-..++.++...|++++|..+|+++... ...+.....
T Consensus 813 ~~~l~~~L~~~~~~~~a~eL~~~~-------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g--l~~~~~~~~----- 878 (950)
T 4gq2_M 813 VTELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV--LYSHTSQFA----- 878 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHGGGC-------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT--TCSSCCSCG-----
T ss_pred HHHHHHHHHHhcHHHHHHHHHhhc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--cccCccccc-----
Confidence 345777788889998888877666 235555577888999999999999999987542 211110000
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCC
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKD 199 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 199 (527)
.......++.... .. .....-|..++..+-+.+-++-+.++-+....... ..| ...|+.+.++.+..|
T Consensus 879 -----~~~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -----VLREFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----GGHHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----chhhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 0001111111111 00 11234677888888888888888877777665421 112 235666666665543
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.27 E-value=31 Score=27.83 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT 465 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 465 (527)
+...++..+|..|..+|+--. ...|......+...|++.+|.++|+..++.+-.|-..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 446677788888877766433 4556677777777788888888888888777666543
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.83 E-value=32 Score=27.76 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChh
Q 043284 442 IGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD 499 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 499 (527)
.+...++..+|..|...||--. ...|...+..+...|++.+|.++|+...+....+..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4557899999999998877654 456888899999999999999999999988864443
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.64 E-value=67 Score=30.44 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNV-QRS---VRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
..+++.+++.|...+.++.|..+..+..--.. .++ ..-+..+...+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44666777777777777777777776642100 011 11122345566667777777776666554
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.95 E-value=25 Score=30.81 Aligned_cols=48 Identities=6% Similarity=-0.023 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 ELAVKTFLRIEKFNVQRSV--RSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
...+++---+..-+++|.. -+....|....+.+++..|..+-+++.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3334444444433333332 24455666667777777777777777654
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.78 E-value=25 Score=29.35 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhC-CCCCc----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 83 SIIHKLARARAFDAVESLLTELKQN-PEIKC----GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
.-+..+....+|++|.+++++..+. ...+. ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466677788888888888776653 11110 112222333333333333344444444422 345555666667
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 043284 158 ALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~ 176 (527)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777788777777775543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.36 E-value=57 Score=24.91 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 448 GIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+.++|..|..+||--. ...|...+..+...|++++|.++|+...+...
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5566666665555433 23455556666666666666666666665554
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.46 E-value=56 Score=28.59 Aligned_cols=23 Identities=4% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHh
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYA 67 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~ 67 (527)
..++.-|+..|+.++|...++.+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45778888999999999999987
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.93 E-value=56 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcc
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445666666677777777776664
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.62 E-value=39 Score=26.09 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=31.7
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHH-H-----HHhcCCchHHHHHHHHhhh
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIH-K-----LARARAFDAVESLLTELKQ 106 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~~~ 106 (527)
+++.|++=+|-++++.+-+..++.......|..+|+ + ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445577777777777776554432113444555555 1 2245666666666666554
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.76 E-value=60 Score=22.61 Aligned_cols=86 Identities=10% Similarity=0.012 Sum_probs=51.9
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHH--HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSI--IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
.-.+..++|..+-+++- ..+ + .-...+ +..+...|+|++|..+.+... .|+...|..+.. .+.|-
T Consensus 17 TG~H~HqEA~tIAdwL~-~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl 83 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLE-RLG----Q-DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGL 83 (115)
T ss_dssp HTTTCHHHHHHHHHHHH-HTT----C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTC
T ss_pred ccchHHHHHHHHHHHHH-hCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--Hhccc
Confidence 34568888888888873 222 2 222333 334557788888876655432 446666655543 57787
Q ss_pred hhHHHHHHHHHHhcCCCCCHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
-+++..-+.++...| .|....
T Consensus 84 ~s~le~rL~~la~sg-~p~~q~ 104 (115)
T 2uwj_G 84 GAALDRRLAGLGGSS-DPALAD 104 (115)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHH
Confidence 777777777777655 344333
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.70 E-value=84 Score=23.97 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 043284 364 STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE--LTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 426 (527)
..++.-|...|+.++|.+.++++....-....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566667777777777777777742111122333344444444222 34566666666655543
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.37 E-value=49 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445666666677777777776664
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.40 E-value=49 Score=27.98 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCH
Q 043284 369 WLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFT--YNMLIQGFCKIGNA 445 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~ 445 (527)
..+..|+.+-+..+++.. ......+..-.+.+..+ +..++.....++++.+.+.|..++... -...+...+..|+.
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 344556666555555542 11111122222223222 234444444555566666665544321 11223333445665
Q ss_pred HHHHHH
Q 043284 446 KEGIRI 451 (527)
Q Consensus 446 ~~A~~~ 451 (527)
+-+..+
T Consensus 233 ~~v~~L 238 (285)
T 1wdy_A 233 GLVQRL 238 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.85 E-value=1.1e+02 Score=24.54 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN-----AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
++..+++.|+-.+-+|.+.| .|....-..++-+.-..|. ...|...++.....|.+--...+...+..++.+-+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Confidence 35578888888888888888 6665555555556555553 23344555555556654333334333333444444
Q ss_pred hhHHHHHHH
Q 043284 480 EGEVGKVVS 488 (527)
Q Consensus 480 ~~~A~~~~~ 488 (527)
-..+...++
T Consensus 104 SNs~y~A~~ 112 (204)
T 2r9g_A 104 SNSAYMALD 112 (204)
T ss_dssp CCHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333333333
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.62 E-value=1e+02 Score=23.94 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 448 GIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+.++|..|..+||--. ...|...+..+...|++.+|.++|+.....+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555554433 23345555555555666666666666555553
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.28 E-value=1.8e+02 Score=30.40 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=33.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK----TSFSLLIEGLYESG 478 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 478 (527)
-|..++..+-+.+-++.++++-+.+++.--.-|. ..+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788888899999999999999988864212232 24666666665544
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.18 E-value=2.2e+02 Score=27.10 Aligned_cols=64 Identities=6% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCC-CCCHH---HHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNF-SHNYD---TYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
..++.+++.|...+.++.|..+..+.. .|.. .+|.. -+..+++.+.-.++|.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346677777777777777777777772 3321 12211 2334556666677777777777776654
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.56 E-value=1.2e+02 Score=24.14 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcC
Q 043284 80 TYHSIIHKLARAR 92 (527)
Q Consensus 80 ~~~~l~~~~~~~~ 92 (527)
.-...+..+...+
T Consensus 35 vR~~A~~~L~~~~ 47 (211)
T 3ltm_A 35 VRRAAAYALGKIG 47 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 3333333333333
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.47 E-value=1.8e+02 Score=26.03 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE--LTEAGRLWDDMVEKGVEPN 428 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 428 (527)
...++.-|...|+.++|.+.++++.........+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 45677778888999999999998853221223344455555544332 3557777777777665443
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.00 E-value=97 Score=22.77 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 043284 364 STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE--LTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 426 (527)
..++.-|...|+.++|.+.++++....-....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566667777777777777777742111122333344444444322 34566666666655543
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.64 E-value=1.3e+02 Score=24.01 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCC
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN-----AKEGIRILEEMLDKG 459 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~ 459 (527)
+..+++.|+-.+-+|++.|-.|....-..++-+.-..|. ...|...++.....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 446777777777777777766655554445445444433 223444444444444
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.57 E-value=77 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.113 Sum_probs=8.3
Q ss_pred HhcCChhHHHHHHHHH
Q 043284 475 YESGNEGEVGKVVSMA 490 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~ 490 (527)
-+.|++++|..++..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4455555555555443
No 294
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=40.14 E-value=84 Score=21.20 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 33 PPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
|++++.+++.....+..........++...+|..+-+ +.....+..-+..++..+...-.-+++..+++.+-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~-d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~ 76 (94)
T 2kz2_A 4 HHHHHHGSSGENLYFQSLMKDTDSEEEIREAFRVEDK-DGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 76 (94)
T ss_dssp SCCCSCCSSCCTHHHHHHHCCCSCHHHHHHHHHHHCT-TCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCT
T ss_pred ccccccCcccHHHHHHHHhcCCCHHHHHHHHHHHHCC-CCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 4555556666776666666666677788888887732 222234444454444443322234456666666543
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.68 E-value=56 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=9.2
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 043284 231 VWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~ 250 (527)
++.|+.+....+++.+.+.|
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 34455554444444444443
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.80 E-value=2.5e+02 Score=26.24 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
...+.+.|.++-.+. +.+.....|..-...+...|++++|.++--...+ +.-.+..+...+-..=...|+..-
T Consensus 341 ~l~n~~lA~~lA~R~-----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~sp 413 (494)
T 1bpo_A 341 VLQNPDLALRMAVRN-----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSP 413 (494)
T ss_dssp TTCCHHHHHHHHHHT-----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCH
T ss_pred ccCCHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCH
Confidence 458888888888766 3344666788889999999999999998887765 233355555444443344567777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNS 175 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (527)
-+.+|..+.+.| ..+..--..+++.-..+|+.+-..+++.+=
T Consensus 414 lL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~ 455 (494)
T 1bpo_A 414 LLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED 455 (494)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC
Confidence 888888888877 566555556677777778777776666543
No 297
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.21 E-value=61 Score=28.36 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=15.8
Q ss_pred HhcCChhHHHHHHHHhcccC
Q 043284 52 FRQQNLDLALQIFHYAGKFH 71 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~ 71 (527)
...|++++|+..|+.++..-
T Consensus 113 ~t~gKf~eAl~~Fr~iL~~i 132 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILLSV 132 (320)
T ss_dssp HHTTCHHHHHHHHHHHHHHG
T ss_pred HhcCCHHHHHHHHHHHHHHh
Confidence 56899999999998886443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.94 E-value=1.5e+02 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHH
Q 043284 158 ALVQNKRYDLVHLMFKN 174 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~ 174 (527)
..+..|+.+-+..+++.
T Consensus 78 ~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455666555555533
No 299
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.81 E-value=96 Score=20.64 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=7.6
Q ss_pred HhcCChhHHHHHHHHH
Q 043284 475 YESGNEGEVGKVVSMA 490 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~ 490 (527)
-+.|++++|..++..+
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3445555554444443
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.54 E-value=1.8e+02 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 043284 401 IAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 44556666677777766666643
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.23 E-value=1.5e+02 Score=22.80 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 043284 405 CESAELTEAGRLWDDMVEKGVEP--NVFTYNMLIQ-G-----FCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 457 (527)
...|++-+|-++|+..-...-.+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34478888888887777654344 4455666666 2 2456888888888888764
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.09 E-value=1.8e+02 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=11.7
Q ss_pred HHHcCCChHHHHHHHHhccc
Q 043284 194 ALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 194 ~~~~~~~~~~A~~~~~~~~~ 213 (527)
.|.+.|.+++|.++|++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 45556666666666665554
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.07 E-value=2.3e+02 Score=24.73 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 043284 364 STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE--LTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 426 (527)
..++.-|...|+.++|.+.++++....-....+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4566667777778888777777742111122333344444443322 34455666666655543
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.03 E-value=1.8e+02 Score=23.56 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCC
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN-----AKEGIRILEEMLDKGCF 461 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 461 (527)
+..+++.|+-.+-+|++.|-.|....-..++-+.-..|. ...|...++.....|.+
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 456777777777777777766655555555555544443 23344445545555543
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.62 E-value=2.8e+02 Score=25.71 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=34.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCC
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN-----AKEGIRILEEMLDKGC 460 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 460 (527)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|. ..-|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888999999999988877766555555555554443 2334445555555553
No 306
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=34.53 E-value=2e+02 Score=23.94 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH
Q 043284 113 GENLFITVIRNYGLAG-RPELAVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI 190 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (527)
+..-+..++..+...+ .......+|..+-..+ -..+..-+..++..+......++...+|+.+-....-.-+..-+..
T Consensus 110 ~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~ 189 (256)
T 2jul_A 110 DEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLA 189 (256)
T ss_dssp EHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHH
T ss_pred CHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 4444444444443222 2334556666554322 1233333444444443333445666667665433111122222333
Q ss_pred HHHHHH-cCC-----------ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 191 LIKALC-KKD-----------DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 191 l~~~~~-~~~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
++..+. ..| .-+.+..+|..+-..| -...++.-+...+.+....-+++..|+.+
T Consensus 190 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 190 IMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 333221 113 2356677777775443 13346677777777777777777777654
No 307
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.04 E-value=3.6e+02 Score=26.67 Aligned_cols=80 Identities=10% Similarity=0.017 Sum_probs=35.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE--- 337 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 337 (527)
....+.-.|+++.|+..+-+. ...+..++...+..| |-.... +.+......-...-+..++..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 445556678888888876643 123444443333332 222110 111111000012235556666654
Q ss_pred cCCHhHHHHHHHHH
Q 043284 338 EGKVEDACELWKRL 351 (527)
Q Consensus 338 ~~~~~~a~~~~~~~ 351 (527)
..+...|.++|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46777777777666
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.03 E-value=3e+02 Score=25.74 Aligned_cols=142 Identities=14% Similarity=0.068 Sum_probs=88.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
..+.+.|.++- .+.|.+-....|..-...+...|++++|.++-.....+.-.+..+.+.+-.+=...|+..-.+.+|
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 35566555553 334555555566666777888889999888888887777777777776665555567777788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 418 DDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 418 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
..+.+.| ..+..--..+++.-..+|+.+-...++.+ ..+..+...=. ++ +..+..-|..+|.++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHHC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHcC
Confidence 8888776 34544344566666667776665555443 23444433222 11 3445666666666653
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.98 E-value=1.6e+02 Score=22.74 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=24.1
Q ss_pred HHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043284 97 VESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQR 147 (527)
Q Consensus 97 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 147 (527)
+.++|..+....-..--...|...+..+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555432111223344455555555555555555555555544333
No 310
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.26 E-value=1.2e+02 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=19.5
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
+.+.|++++|..+.+... .||...|..+.. .+.|-.+++..-+.++.
T Consensus 50 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 344455554444443332 344444443322 23444444444443443
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.03 E-value=1.1e+02 Score=24.00 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.4
Q ss_pred HcCCHHHHHHHHH
Q 043284 372 KEGKIWEAKKLFD 384 (527)
Q Consensus 372 ~~~~~~~a~~~~~ 384 (527)
..|+.+-+..+++
T Consensus 115 ~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 115 EKGHIDNVKLLLE 127 (201)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444433
No 312
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.94 E-value=2.1e+02 Score=23.78 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=7.9
Q ss_pred cCCHhHHHHHHHHHHhCCC
Q 043284 338 EGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~ 356 (527)
.++.....++.+.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3343333444444444443
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.87 E-value=1.8e+02 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
....++.-|...|+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 34567778888888888888777764
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.33 E-value=1.6e+02 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (527)
+.+-.|.++++.+.+.+...+..|....+..+...
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33444444444444443333443333333333333
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.96 E-value=2.6e+02 Score=25.45 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=10.6
Q ss_pred HHHHhcCChhHHHHHHHH
Q 043284 49 SMIFRQQNLDLALQIFHY 66 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~ 66 (527)
......|+.+-+..+++.
T Consensus 19 ~~Aa~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 19 HVASFMGHLPIVKNLLQR 36 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 334556777666666654
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.83 E-value=1.6e+02 Score=22.03 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHc
Q 043284 308 EARNLLDDMLQR 319 (527)
Q Consensus 308 ~a~~~~~~~~~~ 319 (527)
.|.++++.+.+.
T Consensus 39 sa~ei~~~l~~~ 50 (145)
T 2fe3_A 39 TADDIYKALEGK 50 (145)
T ss_dssp CHHHHHHHHGGG
T ss_pred CHHHHHHHHHHh
Confidence 344444444333
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.72 E-value=2.1e+02 Score=23.19 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=5.5
Q ss_pred hcCChHHHHHHHHH
Q 043284 232 WRGDIENAKRVFGD 245 (527)
Q Consensus 232 ~~~~~~~a~~~~~~ 245 (527)
..|+.+.+..+++.
T Consensus 18 ~~g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 18 VQGNLPAVHRLVNL 31 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 33444443333333
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.65 E-value=1.2e+02 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcC
Q 043284 296 MIEAFCKGKKSGEARNLLDDMLQR--KYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 339 (527)
++..+...+..-.|.++++.+.+. +...+..|....+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 333444444444455555555444 33344444433444444443
No 319
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=31.33 E-value=1.8e+02 Score=22.37 Aligned_cols=65 Identities=15% Similarity=0.029 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhc-CCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARA-RAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
.+..-+..++..+... ........+|..+-.......+..-|..++.........+....+|+.+
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~ 101 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4444444444433222 2334555666666543222234334444444333333334444555444
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.86 E-value=1.6e+02 Score=21.71 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
.-.|.++++.+.+.+...+..|....+..+..
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 33444444444444333343333333333333
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.73 E-value=1.3e+02 Score=23.22 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCH
Q 043284 95 DAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF--NVQRSVRSLNTLLNALVQNKRY 165 (527)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 165 (527)
+.+.+-+++..+..+...+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33444444443333443332 2334556666666777788888877766 5556666666666777776643
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.52 E-value=2.8e+02 Score=24.88 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
...++.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666666666666666666653
No 323
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.40 E-value=1.8e+02 Score=22.15 Aligned_cols=48 Identities=4% Similarity=-0.061 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 ELAVKTFLRIEKFNVQRS-VRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+.+.++|..|...|+-.. ...|......+...|++++|.++|+.-++.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 447777777777765444 445666777777777777777777777665
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.19 E-value=1.3e+02 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=13.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhcc
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
.++.-|...|+.++|...++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34555555566666666665554
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.11 E-value=2.2e+02 Score=22.93 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK 304 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (527)
.|.+.|+-++-+|.+.| .|....-..++.+.-.-|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45556666666666555 444444444444443333
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.77 E-value=1.7e+02 Score=24.95 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=9.5
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDE 385 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~ 385 (527)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455555555555544
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.07 E-value=1.9e+02 Score=21.87 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043284 245 DILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK 304 (527)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (527)
.+.+.|.+++ ..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445555533 2333455555555666777777777776655555555555555554444
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.91 E-value=1.7e+02 Score=22.02 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444444444444333344444333
No 329
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.68 E-value=2.3e+02 Score=22.85 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=13.3
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCC
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMV 217 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~ 217 (527)
...+..|+.+....+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3345556666666666554444433
No 330
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=28.48 E-value=1.3e+02 Score=19.73 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 445 AKEGIRILEEMLDKGCFPNKTSFSLLIEG 473 (527)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 473 (527)
.+.|..++++.... +..++..|...+..
T Consensus 4 ~~dA~~yl~~VK~~-F~~~p~~Y~~FL~i 31 (77)
T 2czy_A 4 VEDALTYLDQVKIR-FGSDPATYNGFLEI 31 (77)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HccChHHHHHHHHH
Confidence 45666666666643 23345555544443
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.83 E-value=1.9e+02 Score=21.61 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=30.1
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043284 246 ILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK 304 (527)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (527)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44555554432 23344444455556666777777666554445555444444444443
No 332
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.50 E-value=1.1e+02 Score=20.77 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 043284 467 FSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
+......+.+.|++++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 33445555566666666544443
No 333
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.92 E-value=2.5e+02 Score=22.57 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.6
Q ss_pred cCCHHHH
Q 043284 162 NKRYDLV 168 (527)
Q Consensus 162 ~g~~~~a 168 (527)
.|+.+.+
T Consensus 19 ~g~~~~~ 25 (240)
T 3eu9_A 19 YGIYERC 25 (240)
T ss_dssp TTCHHHH
T ss_pred cCChHHH
Confidence 3333333
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.91 E-value=1.4e+02 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043284 308 EARNLLDDMLQRKYVPSSALCCKVIDLLC 336 (527)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (527)
.|.++++.+.+.+...+..|....+..+.
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 63 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLE 63 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Confidence 34444444444333333333333333333
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.86 E-value=2.4e+02 Score=22.37 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHhcCC
Q 043284 219 NLVTHTTILGGYVWRGD 235 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~ 235 (527)
+...-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 336
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.33 E-value=54 Score=20.18 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHhhhcCCCCCC
Q 043284 164 RYDLVHLMFKNSRHKFKVVPN 184 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~ 184 (527)
+++.|...|..+.....++|+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 455555555555444344443
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.18 E-value=1.4e+02 Score=19.45 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=31.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 420 MVEKGVEPNVFTYNMLIQGFCKIG-NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 420 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455665554432 3344444433 344566666666665544556665555566665554
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.08 E-value=1.1e+02 Score=19.21 Aligned_cols=46 Identities=4% Similarity=-0.078 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN 162 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (527)
.+..++..++...-.+.++-.+.+..+.| ..+...|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34566666666666777777787777777 56666666666666553
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.00 E-value=2.1e+02 Score=21.54 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 315 DMLQRKYVPSSALCCKVIDLLCEEG-KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35567777665433 3455555555 6778899999998887777777777777777777654
No 340
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.78 E-value=1.1e+02 Score=21.01 Aligned_cols=53 Identities=9% Similarity=-0.067 Sum_probs=26.7
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH-----hcCCchHHHHHHHHhhh
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA-----RARAFDAVESLLTELKQ 106 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~ 106 (527)
.++..|++=+|-++++.+-+..++ +....|..+++... +.|+. |..++.+...
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 344557777777777766655432 23334444444322 33444 5555554443
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.58 E-value=1.6e+02 Score=22.01 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=27.9
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043284 246 ILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK 304 (527)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (527)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445554432 223334444444 5566666666666554445555444444444433
No 342
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.19 E-value=2.6e+02 Score=22.20 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------ChhhHH
Q 043284 433 NMLIQGFCKIGNAK---EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV-------ESDSWN 502 (527)
Q Consensus 433 ~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~ 502 (527)
...+.-+.+.|+.+ +|-++.+.|.. .+...-..+..............+++.+|.....+ +.+++.
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~----~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~ 110 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQ----EDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK 110 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHH
Q ss_pred HHHHHHH----------hchhhhHHHHHHHHhhcC
Q 043284 503 FLLTRIV----------SDLDSGAGALDELLVKNC 527 (527)
Q Consensus 503 ~ll~~~~----------~~~~~a~~~~~~~l~~~~ 527 (527)
.|...|. .+...-..++.++|+.|+
T Consensus 111 eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND 145 (186)
T 1oxz_A 111 ELYQRCERMRPTLFRLASDTEDNDEALAEILQAND 145 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhH
No 343
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.02 E-value=3.6e+02 Score=25.48 Aligned_cols=73 Identities=8% Similarity=-0.054 Sum_probs=36.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
|++...-...++.|...|..+....|+ +...|+.++......|+.-+|.-.|-+.... ..|-..+..++...+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~--~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhc--CCCChhHHHHHHHHH
Confidence 333334445556666666666555553 3445666655555555555555555544432 122344444444443
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.80 E-value=2.1e+02 Score=21.06 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 316 MLQRKYVPSSALCCKVIDLLCEEG-KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
+.+.|.+.+..-. .++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556777665433 3455666665 6778889999988887777777776677777766643
No 345
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.36 E-value=1.1e+02 Score=17.87 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 480 EGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
...|++++++..+.|..++.-..++-..+.
T Consensus 9 v~RaiELle~lq~sgevp~~KL~aLq~VLq 38 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKLASLQQVLQ 38 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 344555555555555444444444433333
No 346
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.02 E-value=1.6e+02 Score=23.75 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=5.4
Q ss_pred HcCCChHHHHHHH
Q 043284 196 CKKDDVEGAIRVL 208 (527)
Q Consensus 196 ~~~~~~~~A~~~~ 208 (527)
++.|+.+....++
T Consensus 17 ~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 17 TQYGIYERCRELV 29 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCChHHHHHHH
Confidence 3444444433333
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.69 E-value=1.5e+02 Score=21.65 Aligned_cols=46 Identities=4% Similarity=-0.032 Sum_probs=28.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444455555666777777777766655566666666666666663
No 348
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.65 E-value=2.7e+02 Score=21.83 Aligned_cols=19 Identities=16% Similarity=-0.184 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHhcCCH
Q 043284 147 RSVRSLNTLLNALVQNKRY 165 (527)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~ 165 (527)
++..+-...+.++...++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 4444444555555555443
No 349
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.60 E-value=1.8e+02 Score=19.83 Aligned_cols=14 Identities=0% Similarity=-0.235 Sum_probs=6.0
Q ss_pred hcCChhHHHHHHHH
Q 043284 476 ESGNEGEVGKVVSM 489 (527)
Q Consensus 476 ~~g~~~~A~~~~~~ 489 (527)
..|++++|+.++..
T Consensus 27 ~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 27 AESRYQQALVCYQE 40 (93)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 33444444444443
No 350
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.29 E-value=2.7e+02 Score=21.74 Aligned_cols=23 Identities=9% Similarity=0.045 Sum_probs=10.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC
Q 043284 231 VWRGDIENAKRVFGDILDRGWVP 253 (527)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~ 253 (527)
+..|+.+.-.++.+.+++.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 34444444444444455554433
No 351
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.27 E-value=4.5e+02 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSS 325 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~ 325 (527)
.++.+.|+..+.+|.+.|..|..
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~ 290 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLY 290 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 45666666666666666554443
No 352
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.21 E-value=66 Score=19.80 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGY 265 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (527)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554433233444555555444
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.14 E-value=1.4e+02 Score=22.12 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY 165 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (527)
.++..+...+..-.|.++++.+.+.+...+..+....+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555566677788888877766566666666666777766643
No 354
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.95 E-value=3.9e+02 Score=23.48 Aligned_cols=81 Identities=10% Similarity=-0.113 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH
Q 043284 368 HWLCKEGKIWEAKKLFDEFER-----GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF---TYNMLIQGF 439 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~ 439 (527)
...+..|+.+-+..+++.-.. ....+..-.+.|. ..+..|+.+-+ +.+.+.|..++.. -.+. +...
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tp-L~~A 251 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVA----MRFVEMGIDVNMEDNEHTVP-LYLS 251 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHH----HHHHTTTCCTTCCCTTSCCH-HHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCH-HHHH
Confidence 334566777766666665322 1112222222222 23355665433 3344455544422 1222 2333
Q ss_pred HccCCHHHHHHHHHH
Q 043284 440 CKIGNAKEGIRILEE 454 (527)
Q Consensus 440 ~~~g~~~~A~~~~~~ 454 (527)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 455666666555554
No 355
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.79 E-value=3.9e+02 Score=23.44 Aligned_cols=17 Identities=29% Similarity=-0.042 Sum_probs=12.1
Q ss_pred HHHcCCHHHHHHHHHHH
Q 043284 370 LCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~ 386 (527)
+...|++++|...|+.+
T Consensus 124 ~~t~gKf~eAl~~Fr~i 140 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREA 140 (325)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 34567777777777776
No 356
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.26 E-value=5.8e+02 Score=25.22 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=12.2
Q ss_pred HccCCHHHHHHHHHHH
Q 043284 440 CKIGNAKEGIRILEEM 455 (527)
Q Consensus 440 ~~~g~~~~A~~~~~~~ 455 (527)
...|+++.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6778888888777764
No 357
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.00 E-value=2.2e+02 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcCChhHH
Q 043284 466 SFSLLIEGLYESGNEGEV 483 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A 483 (527)
++...+....+.|-.++.
T Consensus 55 s~rd~~r~a~~~glI~~~ 72 (119)
T 1wty_A 55 SPRAAIRGAFQVGLLPED 72 (119)
T ss_dssp SHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHcCCCCcH
Confidence 344444455555544443
No 358
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.91 E-value=3.6e+02 Score=22.74 Aligned_cols=169 Identities=9% Similarity=-0.038 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q 043284 324 SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE-GKIWEAKKLFDEF-ERGSIPSLLTYNTLI 401 (527)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~-~~~~~~~~~~~~~l~ 401 (527)
+......++....+.+++++..+....+...+...+..--+.+-.+|-.. |....+++++..+ .+.......-...++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-----------------HHHHHHHHHHH---HCC
Q 043284 402 AGMCES--AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNA-----------------KEGIRILEEML---DKG 459 (527)
Q Consensus 402 ~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~---~~~ 459 (527)
..|... ........=.-.+++..+-|+..+-.+-+-.+--.||+ +.|.+.|+++. ...
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHh
Q 043284 460 CFPNKTSFSLLIEGLY-----ESGNEGEVGKVVSMATA 492 (527)
Q Consensus 460 ~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 492 (527)
++|+..+...|+--|. -.+++++|.++-+++..
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 359
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.71 E-value=2.5e+02 Score=25.64 Aligned_cols=292 Identities=15% Similarity=0.097 Sum_probs=129.5
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGDIENAKRVFGDILDRGWVPDA---TTYTVLMDGY 265 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 265 (527)
.+...+..|+.+-+..+++. |..++.. .....+...+..|+.+-+.-+++ .|..++. ... ..+...
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~-t~L~~A 87 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQ-TPLHCA 87 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSC-CHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCC-CHHHHH
Confidence 44455667887766666654 4444432 12234455566777665554443 3433321 122 234445
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcC
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNE---VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPS---SALCCKVIDLLCEEG 339 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 339 (527)
+..|+.+-+.-+ .+.|..++. ...+ .+...+..|+.+.+..+++ .+..++ ..-. ..+...+..|
T Consensus 88 ~~~g~~~~v~~L----l~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g 157 (437)
T 1n11_A 88 ARIGHTNMVKLL----LENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYG 157 (437)
T ss_dssp HHHTCHHHHHHH----HHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTT
T ss_pred HHCCCHHHHHHH----HhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcC
Confidence 566776544433 444444332 2222 2334455677766555554 332221 1111 1344455667
Q ss_pred CHhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNA--ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
+.+-+..++ +.+..++.. .-...+...+..|+.+-+..+++.-.....++..-++.+ ...+..|+.+-+..++
T Consensus 158 ~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 158 KVRVAELLL----ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLL 232 (437)
T ss_dssp CHHHHHHHH----HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence 766544444 344332211 011233445567777655555443322122222222333 3334567665444444
Q ss_pred HHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 418 DDMVEKGVEPNVF---TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK---TSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 418 ~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+.|..++.. -.+. +...+..|+.+-. +.+++.|..++. ...+.+ ....+.|+.+-+..+++.-.
T Consensus 233 ----~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~ 302 (437)
T 1n11_A 233 ----QYGGSANAESVQGVTP-LHLAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGV 302 (437)
T ss_dssp ----HTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTC
T ss_pred ----HcCCCCCCCCCCCCCH-HHHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCc
Confidence 444443321 1222 3334455665543 334444443332 111222 22345677766665555422
Q ss_pred hCCCCChhhHHHHHHHHH-hchhhhH
Q 043284 492 ASGSVESDSWNFLLTRIV-SDLDSGA 516 (527)
Q Consensus 492 ~~~~~~~~~~~~ll~~~~-~~~~~a~ 516 (527)
.....+...+..+..++. |+.+-.+
T Consensus 303 ~~~~~~~~g~t~L~~A~~~g~~~~v~ 328 (437)
T 1n11_A 303 MVDATTRMGYTPLHVASHYGNIKLVK 328 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred cCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence 222233333444444443 6655433
No 360
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.52 E-value=3.2e+02 Score=21.92 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAF 300 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (527)
.|.+.|+-++-+|.+.|-.|....-..++.+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444333333333333
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.07 E-value=1.4e+02 Score=22.18 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 305 KSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
..-.|.++++.+.+.+...+..|....+..+..
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 333444444444444333343333333333333
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.68 E-value=2e+02 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=6.9
Q ss_pred CChhHHHHHHHHHHHC
Q 043284 269 GRLTDAVKVMDEMEDN 284 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~ 284 (527)
+..-.|.++++.+.+.
T Consensus 24 ~~~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 24 DDFRSAQELHDELRRR 39 (131)
T ss_dssp CSCEEHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3344444444444443
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.51 E-value=2e+02 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
...+..|.+.|.+++|.++++++-..
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcC
Confidence 44566788888888888888886654
No 364
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.34 E-value=2e+02 Score=23.67 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=14.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC
Q 043284 298 EAFCKGKKSGEARNLLDDMLQRKYVP 323 (527)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (527)
...+..|+.+.+..+++.+...|..+
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33455666666666666666555443
Done!