BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043286
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 171 IQEKVQANQ-----LQTISLVEDKVIEKLREKEAEVENINKRNLE-LEERMEQLSVEAGA 224
+Q +AN+ ++ I+ ++DK+I + +E + +E + R ++ +EE L VE +
Sbjct: 50 VQRWFRANRFDVTYVRNITDIDDKIIRRAQENKESIEALTARFIQAMEEDAAALGVEPPS 109
Query: 225 WQQRA-RHNENMINALKV 241
W+ RA RH E+MI ++V
Sbjct: 110 WEPRATRHVEDMIAMIQV 127
>sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase OS=Homo sapiens GN=SLK
PE=1 SV=1
Length = 1235
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 119 GLGLSLDNTRMASSADSAL--LSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQ 176
G+ +S+ +++ + +DS L F L+RQ+ RFL+ + R +Q + K+Q
Sbjct: 802 GVEVSVTTSKIVTDSDSKTEELRF--------LRRQELRELRFLQKEEQRAQQQLNSKLQ 853
Query: 177 ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217
+ Q E +++ K R+ + E+EN+ K+ + ER+EQ
Sbjct: 854 QQREQIFRRFEQEMMSKKRQYDQEIENLEKQQKQTIERLEQ 894
>sp|Q8IYT3|CC170_HUMAN Coiled-coil domain-containing protein 170 OS=Homo sapiens
GN=CCDC170 PE=2 SV=3
Length = 715
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 16/117 (13%)
Query: 149 LQRQDAEIDRFLKVQGDRLRQA------IQEKVQA---NQLQTISLVEDKVIEKLREKEA 199
L++ +E+++ LK D + + +EK+ A +L ED ++EK+RE ++
Sbjct: 298 LKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDS 357
Query: 200 EVENINKRNLELE----ERMEQLSVEAGAWQ---QRARHNENMINALKVNLQHVYAQ 249
E+ ++ +LE E +EQL E+G Q QRA+ ENM+ L+ L H+ A+
Sbjct: 358 REESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAE 414
>sp|O55092|SLK_CAVPO STE20-like serine/threonine-protein kinase OS=Cavia porcellus
GN=SLK PE=1 SV=1
Length = 1231
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 119 GLGLSLDNTRMASSADSAL--LSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQ 176
G+ +S+ +++ + +DS L F L+RQ+ RFL+ + R +Q + K+Q
Sbjct: 798 GVEVSVTTSKIVTDSDSKTEELRF--------LRRQELRELRFLQKEEQRAQQQLNGKLQ 849
Query: 177 ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217
+ Q E +++ K R+ + E+EN+ K+ + ER+EQ
Sbjct: 850 QQREQIFRRFEQEMMSKKRQYDQEIENLEKQQKQTIERLEQ 890
>sp|Q5PYH7|DLG2_DANRE Disks large homolog 2 OS=Danio rerio GN=dlg2 PE=2 SV=1
Length = 881
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 86/231 (37%), Gaps = 48/231 (20%)
Query: 53 PYIPPFHVVGFAPGPVNATDGSDGGADLQWNSGLEP---------KRKRLKEQDFLENNS 103
PY PP F+P N L++ S L P + L E+D N S
Sbjct: 344 PYGPPDITHSFSPAMENHISSPGNNGTLEYKSSLPPISPGRYSPLPKHLLGEEDINRNPS 403
Query: 104 -------QISSVDFLQARP-------VSTGLGLSLDNTRMASSADSALLSFI----GDDI 145
+ S F P STGLG N + +SFI D+
Sbjct: 404 LDEMEGHRFDSQHFQLREPRKIVLHKGSTGLGF---NIVGGEDGEGIFVSFILAGGPADL 460
Query: 146 DSELQRQDAEIDRFLKVQGDRLRQAIQEKVQA---NQLQTISLVEDKVIEKLREKEAEVE 202
EL+R D+ L V G LR A E+ A QT++++ E+ EA++
Sbjct: 461 SGELRRG----DQILSVNGIDLRGATHEQAAAALKGAGQTVTIIAQYRPEEYGRFEAKIH 516
Query: 203 NINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSRDS 253
+ L E+M S+ +G+ R N +L V Y +++DS
Sbjct: 517 D-------LREQMMNHSMSSGSGSLRT----NQKRSLYVRALFDYERAKDS 556
>sp|O54988|SLK_MOUSE STE20-like serine/threonine-protein kinase OS=Mus musculus GN=Slk
PE=1 SV=2
Length = 1233
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 119 GLGLSLDNTRMASSADSAL--LSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQ 176
G+ +S+ +++ + +DS L F L+RQ+ R L+ + R +Q + K+Q
Sbjct: 800 GVEVSVTTSKIVTDSDSKTEELRF--------LRRQELRELRLLQKEEQRAQQQLNGKLQ 851
Query: 177 ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217
+ Q E +++ K R+ + E+EN+ K+ + ER+EQ
Sbjct: 852 QQREQIFRRFEQEMLSKKRQYDQEIENLEKQQKQTIERLEQ 892
>sp|P97817|CDR2_MOUSE Cerebellar degeneration-related protein 2 OS=Mus musculus GN=Cdr2
PE=1 SV=2
Length = 455
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 154 AEIDRFLKVQGDRLRQAIQEKVQANQ--LQTISLVEDKV--IEKLREKEAEV-ENINKRN 208
AE+ + L + L ++Q+ NQ LQ I + +V + ++ E+ A+V E ++
Sbjct: 31 AELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTA 90
Query: 209 LELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSRDSK 254
ELEE ++L E+ A QQ+ I L+ N+ H+ +Q + K
Sbjct: 91 RELEETNQKLVAESKASQQKILSLTETIECLQTNIDHLQSQVEELK 136
>sp|Q9Y5K5|UCHL5_HUMAN Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens
GN=UCHL5 PE=1 SV=3
Length = 329
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 147 SELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINK 206
+ELQRQ AE + QG+ + AIQ +V NQ+ L+E++V +KL K ++ENI +
Sbjct: 236 AELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQM----LIEEEV-QKL--KRYKIENIRR 288
Query: 207 RNLELEERMEQLSVEA 222
++ L ME L A
Sbjct: 289 KHNYLPFIMELLKTLA 304
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 31.2 bits (69), Expect = 9.6, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 143 DDIDSELQRQDAEIDRFLK--VQGDRLRQAIQEKVQA--NQLQTISLVEDKVIEKLREKE 198
++I+ EL ++ E++ K + +R R+ + E++++ +++ + L ++K +++++E E
Sbjct: 802 NEIERELNKKTYELEYLEKEIQEKEREREYLTERIKSLKKEIENLILFKEKTLQEVKEAE 861
Query: 199 AEVENINKRNLELEERMEQLSVEAG 223
+V + K+ ELE+ + L + G
Sbjct: 862 VKVYDYIKQKEELEKEILNLKSKLG 886
>sp|B8GP32|EX7L_THISH Exodeoxyribonuclease 7 large subunit OS=Thioalkalivibrio sp.
(strain HL-EbGR7) GN=xseA PE=3 SV=1
Length = 447
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 33/142 (23%)
Query: 115 PVSTGLGLSLDNT---------RMASSADSALLSFIGDDIDSELQRQDAEIDRFLKVQGD 165
PV +G+G +D T SA + L+S + D+ ++RQ
Sbjct: 230 PVVSGVGHEVDVTIADLAADLRAATPSAAAELVSPLRDEWLLHVERQ------------- 276
Query: 166 RLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAE--VENINKRNLELEERMEQLSVEAG 223
R+ + E++Q LQ +L D + +LR++ E ++N +R ELE R+ A
Sbjct: 277 --RRLLVERMQRG-LQHQALKLDNLERRLRQQHPERRLQNQAQRVDELERRL------AL 327
Query: 224 AWQQRARHNENMINALKVNLQH 245
A Q R RH E+ + L+ LQH
Sbjct: 328 AMQHRLRHRESRLARLQDRLQH 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,559,155
Number of Sequences: 539616
Number of extensions: 4621610
Number of successful extensions: 19039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 574
Number of HSP's that attempted gapping in prelim test: 18121
Number of HSP's gapped (non-prelim): 1518
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)