Query 043286
Match_columns 298
No_of_seqs 127 out of 158
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 99.9 3E-25 6.4E-30 200.3 9.1 126 144-269 15-147 (207)
2 PF00038 Filament: Intermediat 89.6 18 0.00038 33.8 16.6 99 145-247 178-282 (312)
3 PF09726 Macoilin: Transmembra 88.1 20 0.00043 38.6 15.7 53 192-244 545-597 (697)
4 PF15619 Lebercilin: Ciliary p 86.1 27 0.00058 31.9 13.6 93 148-246 51-151 (194)
5 KOG0804 Cytoplasmic Zn-finger 85.7 43 0.00093 34.9 15.7 96 145-240 326-430 (493)
6 PF12240 Angiomotin_C: Angiomo 85.2 24 0.00052 33.0 12.6 82 153-243 67-166 (205)
7 PF11180 DUF2968: Protein of u 80.4 49 0.0011 30.7 12.7 81 142-222 102-184 (192)
8 KOG1103 Predicted coiled-coil 79.2 49 0.0011 33.8 13.1 41 140-180 135-185 (561)
9 PF11559 ADIP: Afadin- and alp 78.5 25 0.00054 29.9 9.6 48 193-240 60-107 (151)
10 PF12329 TMF_DNA_bd: TATA elem 77.6 31 0.00067 26.8 9.1 14 192-205 5-18 (74)
11 PF10205 KLRAQ: Predicted coil 77.1 32 0.0007 28.9 9.5 62 160-223 10-71 (102)
12 PF07888 CALCOCO1: Calcium bin 76.5 1.1E+02 0.0024 32.5 16.1 77 162-240 171-247 (546)
13 KOG4673 Transcription factor T 76.2 45 0.00098 36.7 12.5 59 186-247 471-529 (961)
14 KOG0971 Microtubule-associated 74.0 61 0.0013 36.7 13.1 50 197-246 446-502 (1243)
15 PF15254 CCDC14: Coiled-coil d 73.6 36 0.00078 37.6 11.1 27 194-220 531-557 (861)
16 COG4985 ABC-type phosphate tra 73.0 24 0.00053 34.0 8.8 35 117-160 143-177 (289)
17 KOG1029 Endocytic adaptor prot 72.7 47 0.001 37.0 11.7 72 150-222 341-415 (1118)
18 PF14362 DUF4407: Domain of un 72.1 88 0.0019 29.4 12.5 43 178-220 121-163 (301)
19 KOG3091 Nuclear pore complex, 72.0 28 0.00061 36.4 9.6 75 172-250 346-427 (508)
20 KOG4657 Uncharacterized conser 72.0 96 0.0021 29.8 15.8 87 139-228 14-101 (246)
21 PF01166 TSC22: TSC-22/dip/bun 71.0 6 0.00013 30.3 3.5 32 198-229 13-44 (59)
22 PF00804 Syntaxin: Syntaxin; 70.8 44 0.00095 25.4 9.4 81 165-247 17-103 (103)
23 smart00338 BRLZ basic region l 69.9 42 0.0009 24.8 9.1 35 192-226 26-60 (65)
24 TIGR01837 PHA_granule_1 poly(h 69.7 64 0.0014 27.1 9.7 66 154-219 44-116 (118)
25 PF06785 UPF0242: Uncharacteri 68.8 83 0.0018 31.9 11.7 26 147-173 92-117 (401)
26 KOG0163 Myosin class VI heavy 68.5 84 0.0018 35.2 12.5 39 197-235 954-996 (1259)
27 PF12126 DUF3583: Protein of u 67.2 1.4E+02 0.003 29.7 14.1 43 144-190 24-66 (324)
28 KOG4797 Transcriptional regula 66.3 32 0.00068 29.6 7.2 33 198-230 66-98 (123)
29 KOG0612 Rho-associated, coiled 65.9 1.2E+02 0.0025 35.4 13.3 88 156-248 466-553 (1317)
30 TIGR03752 conj_TIGR03752 integ 65.9 61 0.0013 33.7 10.5 30 144-174 63-92 (472)
31 PF13747 DUF4164: Domain of un 65.4 71 0.0015 25.7 11.6 46 195-243 35-80 (89)
32 COG3937 Uncharacterized conser 64.4 27 0.00058 29.7 6.4 77 142-219 15-103 (108)
33 smart00502 BBC B-Box C-termina 64.0 68 0.0015 25.0 11.7 73 145-218 29-101 (127)
34 PF06005 DUF904: Protein of un 63.1 71 0.0015 25.0 10.7 43 193-245 29-71 (72)
35 PF13815 Dzip-like_N: Iguana/D 62.6 38 0.00082 28.1 7.0 34 189-222 84-117 (118)
36 KOG0980 Actin-binding protein 62.3 2.7E+02 0.0058 31.6 14.9 47 200-246 460-506 (980)
37 PF05121 GvpK: Gas vesicle pro 61.5 26 0.00056 28.8 5.6 38 184-221 27-67 (88)
38 PF12180 EABR: TSG101 and ALIX 61.2 42 0.0009 23.4 5.7 33 213-245 2-34 (35)
39 PF09731 Mitofilin: Mitochondr 60.8 2.1E+02 0.0045 29.5 14.4 31 205-235 377-407 (582)
40 PRK10884 SH3 domain-containing 60.7 79 0.0017 29.2 9.4 31 193-223 126-156 (206)
41 PRK00888 ftsB cell division pr 60.4 33 0.00072 28.3 6.3 36 192-227 27-62 (105)
42 PF04380 BMFP: Membrane fusoge 59.9 76 0.0016 24.9 7.9 20 200-219 58-77 (79)
43 PF15066 CAGE1: Cancer-associa 59.4 2.1E+02 0.0046 30.2 12.9 59 192-250 453-526 (527)
44 PF05266 DUF724: Protein of un 59.3 1.4E+02 0.0031 27.2 12.3 46 194-246 126-171 (190)
45 PRK11637 AmiB activator; Provi 59.0 1.6E+02 0.0035 29.3 11.9 16 143-158 43-58 (428)
46 PRK00888 ftsB cell division pr 58.1 41 0.00089 27.8 6.4 41 192-232 34-74 (105)
47 PRK09039 hypothetical protein; 57.9 2E+02 0.0042 28.3 15.3 53 197-249 135-187 (343)
48 PRK11637 AmiB activator; Provi 57.7 2.1E+02 0.0044 28.5 13.8 23 194-216 91-113 (428)
49 PF07716 bZIP_2: Basic region 57.6 68 0.0015 23.0 8.4 30 192-221 25-54 (54)
50 COG2433 Uncharacterized conser 57.2 94 0.002 33.6 10.3 20 59-78 245-266 (652)
51 PRK02119 hypothetical protein; 56.4 93 0.002 24.2 8.2 46 204-249 7-52 (73)
52 PF04859 DUF641: Plant protein 56.4 1.2E+02 0.0025 26.5 9.1 72 142-218 47-127 (131)
53 PF15070 GOLGA2L5: Putative go 56.2 2.9E+02 0.0062 29.7 14.4 101 148-251 164-278 (617)
54 PF00038 Filament: Intermediat 56.1 1.8E+02 0.0038 27.2 14.1 83 139-227 7-89 (312)
55 PF09744 Jnk-SapK_ap_N: JNK_SA 55.7 1.5E+02 0.0033 26.4 10.9 28 143-171 39-66 (158)
56 PF00769 ERM: Ezrin/radixin/mo 54.8 45 0.00098 31.2 6.9 45 197-241 24-68 (246)
57 KOG0608 Warts/lats-like serine 54.6 1.2E+02 0.0026 33.7 10.7 57 140-196 568-624 (1034)
58 KOG4571 Activating transcripti 54.5 62 0.0013 31.8 7.9 32 198-229 254-285 (294)
59 PF13935 Ead_Ea22: Ead/Ea22-li 54.4 1.1E+02 0.0024 26.2 8.7 56 150-212 80-139 (139)
60 KOG3859 Septins (P-loop GTPase 54.3 80 0.0017 31.7 8.7 40 189-228 345-399 (406)
61 PHA02562 46 endonuclease subun 54.0 1.7E+02 0.0036 29.5 11.2 77 143-221 305-387 (562)
62 PF07412 Geminin: Geminin; In 53.1 92 0.002 29.0 8.5 49 163-214 104-154 (200)
63 PF10481 CENP-F_N: Cenp-F N-te 52.7 2.3E+02 0.0051 28.0 11.4 86 161-248 24-109 (307)
64 PRK11448 hsdR type I restricti 52.5 59 0.0013 37.0 8.4 22 203-224 188-209 (1123)
65 PF14738 PaaSYMP: Solute carri 52.4 1.2E+02 0.0025 27.0 8.7 58 150-207 90-147 (154)
66 PF14193 DUF4315: Domain of un 52.3 29 0.00062 28.0 4.5 29 193-221 2-30 (83)
67 KOG0717 Molecular chaperone (D 52.2 3E+02 0.0066 29.0 12.7 17 153-169 180-196 (508)
68 PF05565 Sipho_Gp157: Siphovir 51.6 1.1E+02 0.0023 26.9 8.3 54 197-250 38-91 (162)
69 KOG1151 Tousled-like protein k 51.6 1.3E+02 0.0029 32.1 10.2 97 147-246 240-352 (775)
70 PF11544 Spc42p: Spindle pole 50.1 1.3E+02 0.0029 24.1 8.2 35 190-224 10-44 (76)
71 PF06785 UPF0242: Uncharacteri 48.8 3.1E+02 0.0067 28.0 14.7 55 192-246 155-213 (401)
72 PF12999 PRKCSH-like: Glucosid 48.3 1E+02 0.0022 28.1 7.9 19 203-221 150-168 (176)
73 COG1579 Zn-ribbon protein, pos 47.8 2.6E+02 0.0056 26.7 14.0 152 143-297 55-229 (239)
74 PF07111 HCR: Alpha helical co 47.3 4.4E+02 0.0094 29.2 14.7 73 148-220 95-183 (739)
75 COG2433 Uncharacterized conser 47.0 3.3E+02 0.0071 29.7 12.3 30 191-220 473-502 (652)
76 PF05983 Med7: MED7 protein; 46.5 91 0.002 27.6 7.1 47 166-216 115-162 (162)
77 PF08654 DASH_Dad2: DASH compl 46.4 1.2E+02 0.0026 25.3 7.4 50 191-240 3-52 (103)
78 PF14775 NYD-SP28_assoc: Sperm 46.2 1.2E+02 0.0027 22.8 6.8 46 163-217 13-58 (60)
79 KOG2391 Vacuolar sorting prote 46.1 2.8E+02 0.006 28.2 11.0 22 23-46 50-71 (365)
80 PF09726 Macoilin: Transmembra 45.6 4.4E+02 0.0095 28.8 13.7 33 212-244 544-576 (697)
81 PF04977 DivIC: Septum formati 45.4 62 0.0013 23.9 5.2 33 193-225 18-50 (80)
82 smart00338 BRLZ basic region l 45.2 1.2E+02 0.0026 22.2 7.9 37 207-243 27-63 (65)
83 PRK10920 putative uroporphyrin 45.0 2.9E+02 0.0063 28.0 11.2 84 141-226 50-134 (390)
84 PRK04863 mukB cell division pr 44.9 6.1E+02 0.013 30.2 16.2 48 196-243 352-399 (1486)
85 KOG0288 WD40 repeat protein Ti 44.6 3.9E+02 0.0084 27.9 13.9 68 148-219 3-75 (459)
86 PF11221 Med21: Subunit 21 of 43.5 2E+02 0.0043 24.7 8.7 20 142-161 71-90 (144)
87 smart00787 Spc7 Spc7 kinetocho 43.4 1.7E+02 0.0037 28.6 9.1 31 192-222 211-241 (312)
88 PHA03415 putative internal vir 43.4 85 0.0019 35.1 7.6 87 142-228 298-397 (1019)
89 PF04799 Fzo_mitofusin: fzo-li 43.2 2.5E+02 0.0054 25.6 9.5 52 174-229 102-153 (171)
90 PF11500 Cut12: Spindle pole b 43.0 2.3E+02 0.005 25.4 9.1 25 195-219 101-125 (152)
91 COG5481 Uncharacterized conser 42.7 1.2E+02 0.0027 23.6 6.4 48 167-219 9-58 (67)
92 PF15397 DUF4618: Domain of un 42.6 3.2E+02 0.007 26.4 12.9 77 150-230 134-224 (258)
93 PF06005 DUF904: Protein of un 42.3 1.6E+02 0.0036 22.9 10.1 49 193-244 19-67 (72)
94 PRK00409 recombination and DNA 42.2 5E+02 0.011 28.5 13.2 13 149-161 511-523 (782)
95 PF12761 End3: Actin cytoskele 41.9 56 0.0012 30.3 5.3 48 198-248 95-142 (195)
96 TIGR01069 mutS2 MutS2 family p 39.6 5.5E+02 0.012 28.2 13.3 13 149-161 506-518 (771)
97 PF03194 LUC7: LUC7 N_terminus 39.2 2.5E+02 0.0054 26.6 9.3 91 141-248 80-170 (254)
98 PRK10698 phage shock protein P 38.7 3.2E+02 0.007 25.2 10.9 80 144-225 103-185 (222)
99 PF08549 SWI-SNF_Ssr4: Fungal 38.3 66 0.0014 34.9 5.8 54 160-216 369-429 (669)
100 KOG0977 Nuclear envelope prote 37.9 5.3E+02 0.012 27.6 14.0 40 191-230 147-187 (546)
101 PF09403 FadA: Adhesion protei 37.8 2.7E+02 0.0058 24.1 10.7 81 143-247 23-109 (126)
102 COG5484 Uncharacterized conser 37.4 2.8E+02 0.006 27.2 9.3 57 183-239 154-213 (279)
103 PF12718 Tropomyosin_1: Tropom 37.3 2.7E+02 0.006 24.0 13.5 63 184-247 73-135 (143)
104 PF04111 APG6: Autophagy prote 37.2 2.6E+02 0.0055 27.2 9.2 87 141-230 10-103 (314)
105 PRK04863 mukB cell division pr 36.8 8E+02 0.017 29.3 16.0 53 192-244 362-414 (1486)
106 PF14257 DUF4349: Domain of un 35.9 1.6E+02 0.0035 27.2 7.4 27 190-216 167-193 (262)
107 KOG0971 Microtubule-associated 35.6 5.2E+02 0.011 29.8 12.0 65 164-231 980-1051(1243)
108 PF11505 DUF3216: Protein of u 35.5 1.3E+02 0.0027 25.2 5.8 58 154-217 21-86 (97)
109 PRK06975 bifunctional uroporph 35.2 4.5E+02 0.0099 28.1 11.4 77 148-226 343-419 (656)
110 PF06657 Cep57_MT_bd: Centroso 35.1 2.2E+02 0.0049 22.4 7.5 23 139-161 9-31 (79)
111 PF05384 DegS: Sensor protein 35.1 3.3E+02 0.0072 24.3 13.5 52 197-248 96-147 (159)
112 KOG0579 Ste20-like serine/thre 34.9 7.2E+02 0.016 28.2 13.2 18 83-100 698-715 (1187)
113 PF10234 Cluap1: Clusterin-ass 34.8 4.3E+02 0.0094 25.6 14.2 90 155-246 162-258 (267)
114 COG3074 Uncharacterized protei 34.7 2.4E+02 0.0053 22.7 9.1 32 200-231 40-71 (79)
115 PF04977 DivIC: Septum formati 34.0 1.4E+02 0.0031 21.9 5.6 41 192-232 24-64 (80)
116 PF10186 Atg14: UV radiation r 33.9 3.6E+02 0.0079 24.4 16.4 13 149-161 36-48 (302)
117 PF14916 CCDC92: Coiled-coil d 33.8 1.2E+02 0.0027 23.2 5.1 27 186-212 15-41 (60)
118 PF08317 Spc7: Spc7 kinetochor 33.8 4.4E+02 0.0096 25.4 12.8 92 146-246 193-288 (325)
119 TIGR01069 mutS2 MutS2 family p 33.4 6.8E+02 0.015 27.5 14.2 13 146-158 517-529 (771)
120 PF10174 Cast: RIM-binding pro 33.3 7.2E+02 0.016 27.7 15.2 84 161-246 321-404 (775)
121 PF15290 Syntaphilin: Golgi-lo 33.1 4.9E+02 0.011 25.9 10.3 49 170-220 118-170 (305)
122 PF07888 CALCOCO1: Calcium bin 33.1 6.4E+02 0.014 27.0 15.8 13 192-204 220-232 (546)
123 PF08702 Fib_alpha: Fibrinogen 32.6 3.4E+02 0.0073 23.7 11.7 51 142-196 20-72 (146)
124 KOG4398 Predicted coiled-coil 32.4 2.4E+02 0.0052 28.1 8.1 59 155-216 9-67 (359)
125 PF05914 RIB43A: RIB43A; Inte 32.3 5.4E+02 0.012 25.9 12.2 100 121-239 126-225 (379)
126 PF08172 CASP_C: CASP C termin 32.3 66 0.0014 30.5 4.2 26 202-227 89-114 (248)
127 PF09755 DUF2046: Uncharacteri 31.8 5.3E+02 0.011 25.7 15.7 58 190-247 82-148 (310)
128 PRK14140 heat shock protein Gr 31.7 1.7E+02 0.0037 26.9 6.7 19 154-173 37-55 (191)
129 PF15294 Leu_zip: Leucine zipp 31.7 5E+02 0.011 25.4 11.5 40 209-248 193-233 (278)
130 PF08614 ATG16: Autophagy prot 31.7 3.1E+02 0.0067 24.4 8.3 26 199-224 151-176 (194)
131 KOG1937 Uncharacterized conser 31.5 6.5E+02 0.014 26.7 13.4 33 214-246 346-378 (521)
132 PRK13729 conjugal transfer pil 31.4 1.7E+02 0.0037 30.6 7.3 29 198-226 89-117 (475)
133 PF06818 Fez1: Fez1; InterPro 31.0 3.4E+02 0.0074 25.4 8.6 58 160-217 136-202 (202)
134 KOG0982 Centrosomal protein Nu 30.8 6.6E+02 0.014 26.5 12.7 29 192-220 290-318 (502)
135 PF08202 MIS13: Mis12-Mtw1 pro 30.5 65 0.0014 31.0 4.0 26 206-231 164-189 (301)
136 PRK13447 F0F1 ATP synthase sub 30.4 1E+02 0.0023 26.6 4.9 36 159-195 90-125 (136)
137 COG3120 Uncharacterized protei 29.9 3.3E+02 0.0072 24.2 7.8 84 154-248 39-124 (149)
138 KOG4643 Uncharacterized coiled 29.9 3.6E+02 0.0077 31.2 9.8 67 194-260 193-259 (1195)
139 PF05335 DUF745: Protein of un 29.9 4.4E+02 0.0095 24.2 13.6 80 143-224 66-169 (188)
140 KOG0977 Nuclear envelope prote 29.7 7.2E+02 0.016 26.6 14.0 68 177-244 144-214 (546)
141 KOG0795 Chorismate mutase [Ami 29.7 5.2E+02 0.011 24.9 9.7 35 165-199 175-211 (262)
142 PF13863 DUF4200: Domain of un 29.4 3.1E+02 0.0066 22.2 11.8 28 195-222 77-104 (126)
143 KOG1510 RNA polymerase II holo 29.4 4.1E+02 0.0089 23.7 10.7 28 134-161 50-77 (139)
144 PF03528 Rabaptin: Rabaptin; 29.4 1.8E+02 0.0038 24.6 5.9 46 177-222 52-102 (106)
145 PF06188 HrpE: HrpE/YscL/FliH 29.4 4.3E+02 0.0092 23.8 12.0 13 176-188 40-52 (191)
146 PF04216 FdhE: Protein involve 29.3 54 0.0012 31.0 3.2 35 262-297 169-205 (290)
147 cd00179 SynN Syntaxin N-termin 29.3 3.3E+02 0.0071 22.5 11.7 66 180-248 30-102 (151)
148 PRK02224 chromosome segregatio 29.3 7.5E+02 0.016 26.7 15.8 47 194-240 525-571 (880)
149 PRK05892 nucleoside diphosphat 29.2 2.5E+02 0.0054 24.7 7.1 16 201-216 56-71 (158)
150 PF10752 DUF2533: Protein of u 28.9 2.7E+02 0.0059 22.8 6.6 23 141-163 3-25 (84)
151 cd07665 BAR_SNX1 The Bin/Amphi 28.8 5E+02 0.011 24.5 14.2 85 148-233 84-179 (234)
152 PF08614 ATG16: Autophagy prot 28.6 1.8E+02 0.0039 25.9 6.2 35 193-227 110-144 (194)
153 PF00170 bZIP_1: bZIP transcri 28.4 2.4E+02 0.0052 20.6 7.1 17 210-226 30-46 (64)
154 PRK13182 racA polar chromosome 28.3 4.4E+02 0.0095 23.8 8.6 33 187-219 113-145 (175)
155 PF04340 DUF484: Protein of un 28.0 2.9E+02 0.0063 25.0 7.5 9 181-189 40-48 (225)
156 PRK01885 greB transcription el 27.8 1.9E+02 0.004 25.4 6.1 20 199-218 47-66 (157)
157 TIGR01461 greB transcription e 27.8 1.8E+02 0.0038 25.6 5.9 21 199-219 45-65 (156)
158 COG3937 Uncharacterized conser 27.8 3.9E+02 0.0084 22.9 8.6 46 171-216 62-107 (108)
159 KOG3564 GTPase-activating prot 27.7 6.4E+02 0.014 27.1 10.6 53 194-246 51-103 (604)
160 PF10158 LOH1CR12: Tumour supp 27.4 4.1E+02 0.0088 23.0 12.7 79 165-248 30-108 (131)
161 PF14235 DUF4337: Domain of un 27.0 4.4E+02 0.0096 23.3 10.5 75 149-224 31-105 (157)
162 PF14265 DUF4355: Domain of un 27.0 3.5E+02 0.0076 22.1 8.7 18 154-171 11-28 (125)
163 KOG4661 Hsp27-ERE-TATA-binding 26.9 2.2E+02 0.0049 31.0 7.3 13 183-195 640-652 (940)
164 cd08313 Death_TNFR1 Death doma 26.9 89 0.0019 24.8 3.5 55 189-246 16-70 (80)
165 PRK14143 heat shock protein Gr 26.6 3.8E+02 0.0083 25.4 8.3 20 154-174 67-86 (238)
166 PRK10884 SH3 domain-containing 26.6 5.1E+02 0.011 23.9 12.5 22 201-222 127-148 (206)
167 COG5019 CDC3 Septin family pro 26.5 4.5E+02 0.0097 26.8 9.1 36 182-217 332-367 (373)
168 PF06273 eIF-4B: Plant specifi 26.2 74 0.0016 33.3 3.7 25 189-216 400-424 (492)
169 PRK09098 type III secretion sy 26.2 5.4E+02 0.012 24.0 12.4 14 178-191 51-64 (233)
170 PHA02571 a-gt.4 hypothetical p 26.1 3.3E+02 0.0071 23.3 6.9 40 162-208 14-53 (109)
171 PF04111 APG6: Autophagy prote 25.8 6.3E+02 0.014 24.6 12.9 24 149-173 45-68 (314)
172 PF12737 Mating_C: C-terminal 25.6 78 0.0017 32.4 3.7 24 198-221 394-417 (419)
173 PF08112 ATP-synt_E_2: ATP syn 25.6 3E+02 0.0066 20.9 7.1 46 154-207 7-52 (56)
174 PRK14127 cell division protein 25.5 2.1E+02 0.0046 24.2 5.7 9 154-162 26-34 (109)
175 PF11740 KfrA_N: Plasmid repli 25.4 3.5E+02 0.0077 21.6 10.5 38 184-221 80-117 (120)
176 PF13600 DUF4140: N-terminal d 25.4 1.6E+02 0.0034 23.3 4.8 24 199-222 77-100 (104)
177 PHA02107 hypothetical protein 25.3 1.8E+02 0.0039 27.0 5.6 33 186-218 178-210 (216)
178 PF02994 Transposase_22: L1 tr 24.9 2.4E+02 0.0053 28.0 6.9 50 202-251 140-189 (370)
179 PF11471 Sugarporin_N: Maltopo 24.7 1.6E+02 0.0034 22.3 4.3 24 207-230 33-56 (60)
180 PF12999 PRKCSH-like: Glucosid 24.7 4.5E+02 0.0097 24.1 8.0 18 204-221 158-175 (176)
181 KOG0249 LAR-interacting protei 24.2 6.8E+02 0.015 28.2 10.4 84 161-248 169-258 (916)
182 PRK14139 heat shock protein Gr 24.0 1.5E+02 0.0033 27.0 5.0 20 154-174 32-51 (185)
183 PF11740 KfrA_N: Plasmid repli 23.9 3.8E+02 0.0082 21.4 8.8 40 177-216 80-119 (120)
184 smart00503 SynN Syntaxin N-ter 23.7 3.6E+02 0.0078 21.1 10.8 50 199-248 50-103 (117)
185 COG3165 Uncharacterized protei 23.6 6E+02 0.013 23.9 8.7 76 141-222 127-202 (204)
186 PF12128 DUF3584: Protein of u 23.5 1.2E+03 0.025 26.9 16.4 23 223-245 721-743 (1201)
187 COG3159 Uncharacterized protei 23.4 3.1E+02 0.0067 26.0 6.9 12 178-189 35-46 (218)
188 PF05911 DUF869: Plant protein 23.4 1.1E+03 0.023 26.4 12.9 31 153-183 47-77 (769)
189 smart00806 AIP3 Actin interact 23.3 85 0.0018 32.4 3.5 32 183-216 373-404 (426)
190 KOG2412 Nuclear-export-signal 23.3 4.8E+02 0.01 28.1 8.9 25 54-78 36-63 (591)
191 PF15035 Rootletin: Ciliary ro 23.2 5.7E+02 0.012 23.2 9.5 67 176-247 11-94 (182)
192 KOG0976 Rho/Rac1-interacting s 23.1 1.2E+03 0.026 26.9 13.2 55 192-246 368-426 (1265)
193 PF00170 bZIP_1: bZIP transcri 23.0 3.1E+02 0.0067 20.1 9.0 29 194-222 28-56 (64)
194 PRK09413 IS2 repressor TnpA; R 22.9 2E+02 0.0044 23.6 5.1 30 203-232 75-104 (121)
195 PF12325 TMF_TATA_bd: TATA ele 22.7 4.8E+02 0.01 22.2 14.5 94 140-247 16-109 (120)
196 KOG0978 E3 ubiquitin ligase in 22.7 1.1E+03 0.023 26.2 15.8 136 141-296 508-650 (698)
197 PF12329 TMF_DNA_bd: TATA elem 22.5 3.7E+02 0.0081 20.8 10.0 41 188-231 32-72 (74)
198 PTZ00266 NIMA-related protein 22.5 4.6E+02 0.01 30.0 9.1 59 150-217 467-525 (1021)
199 PRK11415 hypothetical protein; 22.4 1.7E+02 0.0037 22.7 4.3 32 190-221 8-39 (74)
200 PRK06342 transcription elongat 22.3 1.7E+02 0.0037 25.9 4.8 24 193-216 58-81 (160)
201 KOG0687 26S proteasome regulat 22.3 5.2E+02 0.011 26.5 8.6 49 192-248 82-136 (393)
202 PRK00286 xseA exodeoxyribonucl 22.3 7.8E+02 0.017 24.5 14.4 67 179-245 314-390 (438)
203 PF10805 DUF2730: Protein of u 22.2 4.4E+02 0.0096 21.6 9.4 9 196-204 32-40 (106)
204 TIGR02209 ftsL_broad cell divi 22.2 2.6E+02 0.0057 21.1 5.3 36 193-228 25-60 (85)
205 PRK05431 seryl-tRNA synthetase 21.9 8.2E+02 0.018 24.7 10.1 19 233-251 86-104 (425)
206 PRK15422 septal ring assembly 21.8 4.4E+02 0.0095 21.4 9.3 31 200-230 40-70 (79)
207 TIGR03185 DNA_S_dndD DNA sulfu 21.7 9.6E+02 0.021 25.3 12.3 99 143-246 205-312 (650)
208 PF08581 Tup_N: Tup N-terminal 21.7 4.2E+02 0.0091 21.1 8.7 9 198-206 63-71 (79)
209 PF09755 DUF2046: Uncharacteri 21.4 8.2E+02 0.018 24.4 11.8 40 196-248 153-192 (310)
210 PF02996 Prefoldin: Prefoldin 21.4 4.2E+02 0.0092 21.1 6.7 12 137-148 61-72 (120)
211 PF10186 Atg14: UV radiation r 21.1 6.2E+02 0.014 22.9 16.3 8 149-156 22-29 (302)
212 PF07227 DUF1423: Protein of u 21.1 3.8E+02 0.0082 28.0 7.5 21 210-230 354-374 (446)
213 TIGR01462 greA transcription e 20.9 2.4E+02 0.0052 24.3 5.3 17 203-219 46-62 (151)
214 PHA03248 DNA packaging tegumen 20.9 2.9E+02 0.0063 29.7 6.9 28 189-216 82-109 (583)
215 PRK10963 hypothetical protein; 20.8 3.8E+02 0.0082 24.6 6.9 17 182-199 38-54 (223)
216 PRK15365 type III secretion sy 20.7 5.3E+02 0.011 21.9 7.0 43 178-220 48-94 (107)
217 PF07334 IFP_35_N: Interferon- 20.6 1.5E+02 0.0033 23.7 3.7 24 201-224 2-25 (76)
218 PF03962 Mnd1: Mnd1 family; I 20.6 6.3E+02 0.014 22.8 11.0 50 195-247 99-148 (188)
219 PRK14011 prefoldin subunit alp 20.5 4.6E+02 0.01 22.9 7.1 28 191-221 108-135 (144)
220 PF07439 DUF1515: Protein of u 20.5 5.6E+02 0.012 22.1 8.5 52 156-219 2-53 (112)
221 PRK04406 hypothetical protein; 20.4 4.3E+02 0.0093 20.7 8.6 47 204-250 9-55 (75)
222 COG1422 Predicted membrane pro 20.2 3.8E+02 0.0081 25.2 6.7 19 189-207 98-116 (201)
223 KOG1962 B-cell receptor-associ 20.2 6E+02 0.013 24.0 8.1 34 189-222 162-195 (216)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-25 Score=200.26 Aligned_cols=126 Identities=45% Similarity=0.738 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 144 DIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAG 223 (298)
Q Consensus 144 ~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~Q 223 (298)
+|++++++|..|||+|+.+|.|+||..+.+.++++.+.++.++|..+.++||+|++||++++++|++|+++++++++|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhc----c---CCcCCCCCCCCCCCcccc
Q 043286 224 AWQQRARHNENMINALKVNLQHVYAQS----R---DSKEGCGDSEVDDTASCC 269 (298)
Q Consensus 224 aWq~~A~snEA~an~Lra~LqQvlaq~----~---~~~eg~gdse~DDA~ScC 269 (298)
.|+++|++||+++++|+.+|+|++++. . .+..++|+.+.||++|+.
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~ 147 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSY 147 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccc
Confidence 999999999999999999999999984 1 123357888888888843
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.63 E-value=18 Score=33.83 Aligned_cols=99 Identities=18% Similarity=0.316 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----
Q 043286 145 IDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEERMEQL---- 218 (298)
Q Consensus 145 L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEErlrql---- 218 (298)
....+.+-+.|++...+.+.+.|+..... ....+-.+=+. .+...+.....||+.+..+|..|+.+|..+
T Consensus 178 ye~~~~~~~~e~e~~y~~k~~~l~~~~~~----~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 178 YEEIAQKNREELEEWYQSKLEELRQQSEK----SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhcccccccccccccc----cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 34455677778888888888887765533 22222222222 445668899999999999999999999765
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 219 SVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 219 ~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
..+.+.|+..-..-|+....|+..+++.+
T Consensus 254 ~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 254 DEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 57778899999999999999999887654
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.13 E-value=20 Score=38.65 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=39.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
.|.|+.|.||.++++.....||+++.++.|.+.-+..-+.++.-+-.|.+.|.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 47788899999999999999999999999998777753334333344444443
No 4
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.07 E-value=27 Score=31.87 Aligned_cols=93 Identities=19% Similarity=0.339 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHH
Q 043286 148 ELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME--------QLS 219 (298)
Q Consensus 148 qLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr--------ql~ 219 (298)
.++....++.++|.-|.+.+|. |.+.-++ + ..-+..+-++||++++||.++.-.+..|...+. .|.
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~-Lr~~LR~-~----q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~ 124 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRV-LRERLRK-S----QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQ 124 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH-HHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 4556667888889999888887 5444222 1 223455667899999999988877776655333 233
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 220 VEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 220 aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
-+-..-......++-.+..|..+|+-.
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666666666543
No 5
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.68 E-value=43 Score=34.89 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=68.4
Q ss_pred HHHHHHHHHH----HHHHHHHHhhHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043286 145 IDSELQRQDA----EIDRFLKVQGDRLRQ----AIQEKVQ-ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERM 215 (298)
Q Consensus 145 L~sqLqqQ~~----EID~~lr~Q~ErLR~----~L~E~rq-Rh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErl 215 (298)
|.++|+-|+. .+-.+.+.|.+.+|. .++|... .+--..+.++...+-+||.+-...+++..++..++.|-=
T Consensus 326 l~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655553 334444445555554 4445444 344457788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 216 EQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 216 rql~aE~QaWq~~A~snEA~an~Lr 240 (298)
+.|..+-+.|++.++.-|..-+...
T Consensus 406 ~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 406 KKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876554443333
No 6
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=85.19 E-value=24 Score=32.96 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHH
Q 043286 153 DAEIDRFLKVQGDRLRQ---AIQEKVQANQLQTISLVEDKVIEKLR---------------EKEAEVENINKRNLELEER 214 (298)
Q Consensus 153 ~~EID~~lr~Q~ErLR~---~L~E~rqRh~r~ll~avE~~~~~rLR---------------eKE~EIera~rrn~ELEEr 214 (298)
+.-=.++|.+++|-.+- -|+|-.-|| .+ +.|++.+++.|.+ .-++||-.+++|+.|||-|
T Consensus 67 rEkEErILaLEad~~kWEqkYLEEs~mrq-~a-~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~R 144 (205)
T PF12240_consen 67 REKEERILALEADMTKWEQKYLEESAMRQ-FA-MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENR 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHH
Confidence 33445889999887763 255533222 22 3455555566666 3379999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 043286 215 MEQLSVEAGAWQQRARHNENMINALKVNL 243 (298)
Q Consensus 215 lrql~aE~QaWq~~A~snEA~an~Lra~L 243 (298)
|+.|.++- .+.+||+..|+...
T Consensus 145 IK~LhaqI-------~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 145 IKALHAQI-------AEKDAMIKVLQQRS 166 (205)
T ss_pred HHHHHHHH-------HHHHHHHHHHHhhc
Confidence 99998764 56899998887643
No 7
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.43 E-value=49 Score=30.67 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=52.9
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 142 GDDI-DSELQRQDAEIDRFLKVQGDRLRQAIQEK-VQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 142 ~d~L-~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~-rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
..+| ..+|+-|+.-+|++|..+.+|+...=.+. +.+.+.+-+..-...+.+-..+.+.|-..+..+..+|..+|++|.
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 46788888888888887766655433332 234444555555556666666777777777777777777777776
Q ss_pred HHH
Q 043286 220 VEA 222 (298)
Q Consensus 220 aE~ 222 (298)
.+.
T Consensus 182 ~q~ 184 (192)
T PF11180_consen 182 RQA 184 (192)
T ss_pred HHh
Confidence 554
No 8
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=79.16 E-value=49 Score=33.83 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHH
Q 043286 140 FIGDDIDSELQRQDAEIDRFLKVQG----------DRLRQAIQEKVQANQL 180 (298)
Q Consensus 140 ~l~d~L~sqLqqQ~~EID~~lr~Q~----------ErLR~~L~E~rqRh~r 180 (298)
.-||||.++|++.+..+-+-|..+. ++|-+.|+|-+.||--
T Consensus 135 aeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 135 AEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999998888877776664 4566678887777753
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.52 E-value=25 Score=29.88 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
+++.++.++++....+..|++++..+..|...++..-+.-+.....+.
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333333333
No 10
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.61 E-value=31 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=6.2
Q ss_pred HHHHHhHHHHHHHH
Q 043286 192 EKLREKEAEVENIN 205 (298)
Q Consensus 192 ~rLReKE~EIera~ 205 (298)
++|+|||+.|+.+.
T Consensus 5 ~~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 5 KKLAEKDEQIAQLM 18 (74)
T ss_pred HHHHhHHHHHHHHH
Confidence 34444444444433
No 11
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.11 E-value=32 Score=28.89 Aligned_cols=62 Identities=31% Similarity=0.417 Sum_probs=42.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 160 LKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAG 223 (298)
Q Consensus 160 lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~Q 223 (298)
|+.|+.-|+.++-|- |.....|-.-+... -..||..+.|++.++-+|..|+.|+..|-.|-.
T Consensus 10 LraQ~~vLKKaVieE-Q~k~~~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEE-QAKNAELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788877664 33333333333222 135788889999999999999999887766544
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.53 E-value=1.1e+02 Score=32.52 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=51.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 162 VQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 162 ~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
.+.++|...|... +..+..|....+. +.........|.+.+..++.++.+|+++|..+...+....++++.+...|+
T Consensus 171 ~~v~~l~~eL~~~-~ee~e~L~~~~ke-l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 171 EEVERLEAELEQE-EEEMEQLKQQQKE-LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555443 2334444444433 333455567788888899999999999999999988888887776665553
No 13
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.16 E-value=45 Score=36.65 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 186 VEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 186 vE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
..+.+++|||+|+-|-+.+-.|+.+ .|..|.-|.+.-..+-+..|+|--.++-++...-
T Consensus 471 ~qs~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3567889999999999988887664 4677778888888888888888877777776553
No 14
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.03 E-value=61 Score=36.68 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAW-------QQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaW-------q~~A~snEA~an~Lra~LqQv 246 (298)
.|+=++.++-+|.+||||++.|+.|...- -.++.+|-....-||-.|+++
T Consensus 446 AE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 446 AEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999988776544 456677777778889888887
No 15
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.62 E-value=36 Score=37.57 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~a 220 (298)
||++|+||+|++-.+.-|+.-+++|-.
T Consensus 531 lrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 531 LRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777766666544
No 16
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=73.04 E-value=24 Score=34.02 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=22.0
Q ss_pred cccccccccccccccCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 043286 117 STGLGLSLDNTRMASSADSALLSFIGDDIDSELQRQDAEIDRFL 160 (298)
Q Consensus 117 STGLrLs~d~~~~~ss~~s~~~s~l~d~L~sqLqqQ~~EID~~l 160 (298)
--|+-|+|++... -+.||.+..+|++.-.++|.+.
T Consensus 143 ~yG~ll~~~~ngq---------~l~Gd~l~~eLqkr~~~v~~l~ 177 (289)
T COG4985 143 LYGKLLRFDSNGQ---------ELDGDPLERELQKRLLEVETLR 177 (289)
T ss_pred hhhheeeeccCCC---------cccCcHHHHHHHHHHHHHHHHH
Confidence 3456666665431 1337888888888777777654
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.65 E-value=47 Score=37.01 Aligned_cols=72 Identities=29% Similarity=0.377 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 150 QRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVED-KVIEKLREKE--AEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 150 qqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~-~~~~rLReKE--~EIera~rrn~ELEErlrql~aE~ 222 (298)
++.+.|+.+.=|.+.|+=-++.+|+-++++..|-.-+|+ ..+.|=||-| -||++..+...||| +.|+++.|.
T Consensus 341 qreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 341 QREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334456666666777777777888877777777766665 3333333322 34666666666664 566666664
No 18
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=72.10 E-value=88 Score=29.42 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 178 NQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 178 h~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
+..+....++.....++.+.+.++..+.....+++.++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 121 KQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555555554443
No 19
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.00 E-value=28 Score=36.41 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Q 043286 172 QEKVQANQLQTISLVEDKVIEKLREKE-----AEVENINKRNLELEERMEQLSVEA--GAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 172 ~E~rqRh~r~ll~avE~~~~~rLReKE-----~EIera~rrn~ELEErlrql~aE~--QaWq~~A~snEA~an~Lra~Lq 244 (298)
+++.-.++|..|.+|.+.+. .|. |+ ..|+++++|+++|+.|+=++-.-- ..=++.|..-+. ..||.+|+
T Consensus 346 Q~q~~~~~r~ri~~i~e~v~-eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E--E~Lr~Kld 421 (508)
T KOG3091|consen 346 QDQEVKQHRIRINAIGERVT-ELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE--EELRAKLD 421 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH--HHHHHHHH
Confidence 33334555666666666543 333 33 479999999999999998775422 222222222111 23566666
Q ss_pred HHHHhc
Q 043286 245 HVYAQS 250 (298)
Q Consensus 245 Qvlaq~ 250 (298)
-++++.
T Consensus 422 tll~~l 427 (508)
T KOG3091|consen 422 TLLAQL 427 (508)
T ss_pred HHHHHh
Confidence 666553
No 20
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.97 E-value=96 Score=29.76 Aligned_cols=87 Identities=28% Similarity=0.338 Sum_probs=50.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 139 SFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVE-DKVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 139 s~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE-~~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
.+++|-..+.+..++.-||.|++.--.++-..+.|-.++-.+ .-+| ..+..-|++-+.|+.+.+....|-+++.-.
T Consensus 14 l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~---~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ 90 (246)
T KOG4657|consen 14 LSLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQ---SQVELENLKADLRETENELVKVNELKTEKEARQMG 90 (246)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999987755554445443221111 1112 233344666666666666555555555555
Q ss_pred HHHHHHHHHHH
Q 043286 218 LSVEAGAWQQR 228 (298)
Q Consensus 218 l~aE~QaWq~~ 228 (298)
++.|.-+-|..
T Consensus 91 ieqeik~~q~e 101 (246)
T KOG4657|consen 91 IEQEIKATQSE 101 (246)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 21
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.00 E-value=6 Score=30.28 Aligned_cols=32 Identities=41% Similarity=0.442 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
-+|++-.+.+..||+++..+|+.|+...+..|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36888899999999999999999998766554
No 22
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=70.76 E-value=44 Score=25.35 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHH
Q 043286 165 DRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAG------AWQQRARHNENMINA 238 (298)
Q Consensus 165 ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~Q------aWq~~A~snEA~an~ 238 (298)
+++...+.+-++.|.+.|...... ..-=++-|.=...+++....+..+|+.+..... .+-...+-......+
T Consensus 17 ~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~~ 94 (103)
T PF00804_consen 17 DKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQA 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHH
Confidence 344455555555554444433322 111223344455566777788888888888753 455666777777777
Q ss_pred HHHHHHHHH
Q 043286 239 LKVNLQHVY 247 (298)
Q Consensus 239 Lra~LqQvl 247 (298)
|..+++.++
T Consensus 95 L~~kf~~~m 103 (103)
T PF00804_consen 95 LSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 777777654
No 23
>smart00338 BRLZ basic region leucin zipper.
Probab=69.93 E-value=42 Score=24.76 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
..+.+-|.+++.+...|.+|...+.+|..|.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777766554
No 24
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=69.67 E-value=64 Score=27.08 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQ---ANQLQTISLVEDKVIEKLREKE----AEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rq---Rh~r~ll~avE~~~~~rLReKE----~EIera~rrn~ELEErlrql~ 219 (298)
.-||.++.-=.|.++..+.+.+. .+...+=.+++..+.+-|..-. +||+.+..|..+|+.+|+.|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555554444555555544432 2333455666777776666654 789999999999999998875
No 25
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.81 E-value=83 Score=31.88 Aligned_cols=26 Identities=12% Similarity=0.380 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 147 SELQRQDAEIDRFLKVQGDRLRQAIQE 173 (298)
Q Consensus 147 sqLqqQ~~EID~~lr~Q~ErLR~~L~E 173 (298)
.-++.++.|.+++ +.|+++|...|-.
T Consensus 92 es~~e~q~e~~qL-~~qnqkL~nqL~~ 117 (401)
T PF06785_consen 92 ESVEERQQESEQL-QSQNQKLKNQLFH 117 (401)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence 3455566666653 6777777666543
No 26
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=68.55 E-value=84 Score=35.23 Aligned_cols=39 Identities=33% Similarity=0.219 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAWQ----QRARHNENM 235 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaWq----~~A~snEA~ 235 (298)
|.+|.|+..||.+|=|+|.+|-+.|.+.-. .+|++.|.-
T Consensus 954 k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee 996 (1259)
T KOG0163|consen 954 KRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEE 996 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777666655432 445554443
No 27
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=67.16 E-value=1.4e+02 Score=29.73 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 144 DIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKV 190 (298)
Q Consensus 144 ~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~ 190 (298)
.-.++|.+.+.|+..+|+.+..+|-..+ +.+-+.||.+|+...
T Consensus 24 sav~qL~~~r~~teelIr~rVrq~V~hV----qaqEreLLe~v~~rY 66 (324)
T PF12126_consen 24 SAVSQLGRARADTEELIRARVRQVVAHV----QAQERELLEAVEARY 66 (324)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3467899999999999999988877655 555678888887643
No 28
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.27 E-value=32 Score=29.62 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~QaWq~~A~ 230 (298)
-+|+|-++.+..||+||.++|+.|+...+..|-
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 367788888889999999999999988877653
No 29
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=65.88 E-value=1.2e+02 Score=35.39 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=48.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 043286 156 IDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENM 235 (298)
Q Consensus 156 ID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~ 235 (298)
+|.=+....++++....|..+ ..++|+--=-.-+..++.++++++.++.+++..|++.++-+..+++ -+.-...-
T Consensus 466 ~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~----~~~~~~~k 540 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND----NAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Confidence 444444444555554444422 3333332222233456777777777777777777777776643333 23334556
Q ss_pred HHHHHHHHHHHHH
Q 043286 236 INALKVNLQHVYA 248 (298)
Q Consensus 236 an~Lra~LqQvla 248 (298)
++.|+.+|+....
T Consensus 541 v~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 541 VNSLRKQLEEAEL 553 (1317)
T ss_pred HHHHHHHHHHhhh
Confidence 7888888886643
No 30
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.86 E-value=61 Score=33.75 Aligned_cols=30 Identities=7% Similarity=0.273 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 043286 144 DIDSELQRQDAEIDRFLKVQGDRLRQAIQEK 174 (298)
Q Consensus 144 ~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~ 174 (298)
.|.+++.+-+.|+..+++ ++++|+..-+..
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L 92 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 456778888888887764 556666655444
No 31
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=65.41 E-value=71 Score=25.73 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 043286 195 REKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNL 243 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~L 243 (298)
.+.++||+++......|.+.|-+..++...|....+ .+..-|.+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~---Evs~rL~~a~ 80 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANR---EVSRRLDSAI 80 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 477889999999999999999999999988876654 3444444433
No 32
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=64.40 E-value=27 Score=29.73 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHH-HHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHH
Q 043286 142 GDDIDSELQRQD-AEIDRFLK---VQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVE--------NINKRNL 209 (298)
Q Consensus 142 ~d~L~sqLqqQ~-~EID~~lr---~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIe--------ra~rrn~ 209 (298)
|-.+.+.+.-+- .=||.+|+ +-.|.=++.+.|. -++...--.-+|...-++|++...+++ ..+-+.-
T Consensus 15 gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl-~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd 93 (108)
T COG3937 15 GAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDL-LRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVD 93 (108)
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHH
Confidence 333444443332 34566664 3344444444443 122222223344455555555444333 3334444
Q ss_pred HHHHHHHHHH
Q 043286 210 ELEERMEQLS 219 (298)
Q Consensus 210 ELEErlrql~ 219 (298)
+|+++|+.|.
T Consensus 94 ~Lerqv~~Le 103 (108)
T COG3937 94 ALERQVADLE 103 (108)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 33
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.05 E-value=68 Score=25.04 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 145 IDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 145 L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
....++.+...+-.-|....++|+..|.+. +.....=|..++......|.++-..++....+...+-+++.++
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~-e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKR-KKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777778888888888663 4444444444444444455555555444444444444444443
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.09 E-value=71 Score=24.95 Aligned_cols=43 Identities=42% Similarity=0.642 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQ 245 (298)
.|++|..++. ..|.+|.+...+|..|-.+|+.+ +.+|-.+|++
T Consensus 29 eLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~r-------l~~LL~kl~~ 71 (72)
T PF06005_consen 29 ELKEKNNELK---EENEELKEENEQLKQERNAWQER-------LRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-
T ss_pred HHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhc
Confidence 3444444444 55778888888888888888765 3445555544
No 35
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=62.62 E-value=38 Score=28.13 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
....++++...+++++..+..++.+.++.|-.|.
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445788888999999999999999999887764
No 36
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.33 E-value=2.7e+02 Score=31.60 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
-|..+.+.|.+|.+.|..+.-+.+-|-.+..+..-+...|+..|.-.
T Consensus 460 s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 460 SIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999998888888776533
No 37
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=61.47 E-value=26 Score=28.81 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 184 SLVEDKVIEKLRE---KEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 184 ~avE~~~~~rLRe---KE~EIera~rrn~ELEErlrql~aE 221 (298)
.++|+.+.+|+-. -|+|||++..-.++||+++.+++.+
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666544 5899999999999999999988764
No 38
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=61.15 E-value=42 Score=23.35 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 043286 213 ERMEQLSVEAGAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 213 Erlrql~aE~QaWq~~A~snEA~an~Lra~LqQ 245 (298)
.+|+.+..=++-|+.--.+.|+.|-+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 467777778999999999999999999998864
No 39
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=60.81 E-value=2.1e+02 Score=29.52 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 043286 205 NKRNLELEERMEQLSVEAGAWQQRARHNENM 235 (298)
Q Consensus 205 ~rrn~ELEErlrql~aE~QaWq~~A~snEA~ 235 (298)
..+..+|..+|+.|+.=...|......+..+
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~ 407 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSEAEDENRRA 407 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777666776666665543
No 40
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.73 E-value=79 Score=29.15 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAG 223 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~Q 223 (298)
++.+.+.+|..+..+|.+|.+.+..+..|..
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555543
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=60.44 E-value=33 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQ 227 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~ 227 (298)
.++++...+++.+..+|.+|+++-..|..|...|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467888888888888888888888888888888875
No 42
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=59.93 E-value=76 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQLS 219 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~ 219 (298)
.+.+++.+..+||.||..|+
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666554
No 43
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.38 E-value=2.1e+02 Score=30.21 Aligned_cols=59 Identities=29% Similarity=0.333 Sum_probs=44.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH----HH-----------HHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLS----VE-----------AGAWQQRARHNENMINALKVNLQHVYAQS 250 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~----aE-----------~QaWq~~A~snEA~an~Lra~LqQvlaq~ 250 (298)
+-|-+||+||+|+....-|||.-.+..- -| -..+|..-+.|.+----|++.|+.+++|+
T Consensus 453 k~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 453 KTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999985442211 11 12467777888888889999999988874
No 44
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.29 E-value=1.4e+02 Score=27.17 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
++++|.+|..+.++..+|++....+..+ -...++.+..|.+..+.+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~-------ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEK-------KEAKDKEISRLKSEAEAL 171 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4455566655555555555554444433 333445555555544443
No 45
>PRK11637 AmiB activator; Provisional
Probab=59.03 E-value=1.6e+02 Score=29.26 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDR 158 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~ 158 (298)
+++..+|++.+.+|+.
T Consensus 43 ~~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 43 SDNRDQLKSIQQDIAA 58 (428)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444443
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.10 E-value=41 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHN 232 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~sn 232 (298)
+.+.+.+.|++++..+|.+|.+.+..|.-....=..+||.+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 45667788888899999999999998876445555555543
No 47
>PRK09039 hypothetical protein; Validated
Probab=57.94 E-value=2e+02 Score=28.34 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQ 249 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq 249 (298)
+.-+|.+++.....|.+++..|.++-.+=...-+..++-...|...|+.++++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777777777777777777777777888888888888754
No 48
>PRK11637 AmiB activator; Provisional
Probab=57.68 E-value=2.1e+02 Score=28.51 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=8.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlr 216 (298)
|.+.+.+|+.+.++..+|++.|.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 49
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.64 E-value=68 Score=23.00 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
....+.+.++..+...|..|...+..|..|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566777788888888888888877665
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.15 E-value=94 Score=33.59 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=12.9
Q ss_pred ccccccCCCCcc--ccCCCCCC
Q 043286 59 HVVGFAPGPVNA--TDGSDGGA 78 (298)
Q Consensus 59 ~~~g~~~~~~~~--~~~~d~~~ 78 (298)
=.||-+|+-+++ ...-||.+
T Consensus 245 lIVGIDPGiTtgiAvldldGev 266 (652)
T COG2433 245 LIVGIDPGITTGIAVLDLDGEV 266 (652)
T ss_pred eEEEeCCCceeeEEEEecCCcE
Confidence 468888887665 33556654
No 51
>PRK02119 hypothetical protein; Provisional
Probab=56.43 E-value=93 Score=24.19 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 043286 204 INKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQ 249 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq 249 (298)
+..|..+||.++.-.+.-...--.+--.....+..|+..|..+..+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333233333333445566666655444
No 52
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.38 E-value=1.2e+02 Score=26.49 Aligned_cols=72 Identities=31% Similarity=0.354 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLKVQ------GDRLRQAIQEKVQANQLQTISLVEDKV---IEKLREKEAEVENINKRNLELE 212 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr~Q------~ErLR~~L~E~rqRh~r~ll~avE~~~---~~rLReKE~EIera~rrn~ELE 212 (298)
...+.++|++=..==+.|.+-+ ...|-..++|+ ++++..-|..+ -.-|+.||.||..++++..++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~-----qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQ-----QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678877766556666544 33455556554 23444444333 3568999999999988877776
Q ss_pred HHHHHH
Q 043286 213 ERMEQL 218 (298)
Q Consensus 213 Erlrql 218 (298)
-.-+.|
T Consensus 122 ~~n~~L 127 (131)
T PF04859_consen 122 RANKSL 127 (131)
T ss_pred HHHHHh
Confidence 555444
No 53
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=56.23 E-value=2.9e+02 Score=29.72 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 148 ELQRQDAEI-DRFLKVQGDR----LRQAIQEKVQANQLQTISLVED---KVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 148 qLqqQ~~EI-D~~lr~Q~Er----LR~~L~E~rqRh~r~ll~avE~---~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
+|++|-.|+ |.|+++.+++ -..-.+.++.|....=++-++. .+..+|..|+.|+..+...+.++...|-+..
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHH------HHHHHHHHHHhcc
Q 043286 220 VEAGAWQQRARHNENMINA------LKVNLQHVYAQSR 251 (298)
Q Consensus 220 aE~QaWq~~A~snEA~an~------Lra~LqQvlaq~~ 251 (298)
+. |+.+|..+|++-.- |-..|++--.++.
T Consensus 244 a~---~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~ 278 (617)
T PF15070_consen 244 AA---YQQLASEKEELHKQLLQQTQLMDRLQHEESQGK 278 (617)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.09 E-value=1.8e+02 Score=27.23 Aligned_cols=83 Identities=23% Similarity=0.409 Sum_probs=41.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 139 SFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 139 s~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
..|.|-|++.|++= ++|..++.+|...|...+.+.. .-++.+....-.-|++.-..|+.+.+.+..|+-.+..+
T Consensus 7 ~~LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~-~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 7 QSLNDRLASYIEKV-----RFLEQENKRLESEIEELREKKG-EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhccc-ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 45667777776654 4455566666666655433321 11222333333444455555666666666666666666
Q ss_pred HHHHHHHHH
Q 043286 219 SVEAGAWQQ 227 (298)
Q Consensus 219 ~aE~QaWq~ 227 (298)
..|...++.
T Consensus 81 ~~e~~~~r~ 89 (312)
T PF00038_consen 81 KEELEDLRR 89 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 55
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=55.73 E-value=1.5e+02 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLKVQGDRLRQAI 171 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L 171 (298)
|.+++.-+.+..|+. .|+..+++|....
T Consensus 39 e~~~~~n~~~~~e~~-~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 39 ESLASRNQEHEVELE-LLREDNEQLETQY 66 (158)
T ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHHHH
Confidence 556666667777777 4455666666544
No 56
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.75 E-value=45 Score=31.23 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKV 241 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra 241 (298)
...++.+...+...|++.++.+..|+..-...+..-+.+...|..
T Consensus 24 a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 24 AQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555667777777777777777766666666666654
No 57
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=54.59 E-value=1.2e+02 Score=33.67 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 140 FIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLRE 196 (298)
Q Consensus 140 ~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLRe 196 (298)
|+-+-+---|+..+.-..|-.+++.|=++.+|-+..|-++|-+|.-=|+...+.=|+
T Consensus 568 fMEQHVEnvlksyqqr~~Rk~QLEkEM~kagLpd~~q~qMrkmL~QKESnYiRLkRa 624 (1034)
T KOG0608|consen 568 FMEQHVENVLKSYQQREKRKKQLEKEMVKAGLPDIMQNQMRKMLQQKESNYIRLKRA 624 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 345555555555566666666777777777777766666666666555554433333
No 58
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=54.54 E-value=62 Score=31.83 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
+-|++-+.+||.+|-+++-.|+-|.+--+.+-
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999999999988888877665543
No 59
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=54.43 E-value=1.1e+02 Score=26.18 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHH
Q 043286 150 QRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKV----IEKLREKEAEVENINKRNLELE 212 (298)
Q Consensus 150 qqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~----~~rLReKE~EIera~rrn~ELE 212 (298)
++...++|.. .+++.++..+.+.+. -|.+++..+ ..+--..+..|..+.+|.+|||
T Consensus 80 ~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 80 QQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566655 556666665555432 344444443 3444556777777777777775
No 60
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.31 E-value=80 Score=31.71 Aligned_cols=40 Identities=38% Similarity=0.571 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNL---------------ELEERMEQLSVEAGAWQQR 228 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~---------------ELEErlrql~aE~QaWq~~ 228 (298)
...+|+++||+|+-.+.+... .||+..|+|+.|..+++.+
T Consensus 345 mFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 345 MFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544333 4566666666666665544
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.01 E-value=1.7e+02 Score=29.52 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLK------VQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr------~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
.+....|+.+-.+++.-+. .+..++...+.+. +......-..++. ..++++..+.||+++..+..++++.++
T Consensus 305 ~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el-~~~i~~~~~~i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLEL-KNKISTNKQSLIT-LVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHH
Q ss_pred HHHHH
Q 043286 217 QLSVE 221 (298)
Q Consensus 217 ql~aE 221 (298)
++..+
T Consensus 383 ~l~~~ 387 (562)
T PHA02562 383 KLQDE 387 (562)
T ss_pred HHHHH
No 62
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=53.12 E-value=92 Score=29.04 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043286 163 QGDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEER 214 (298)
Q Consensus 163 Q~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEEr 214 (298)
-.++-|..|+|+||. +|-.++++ ..-+.+-.|++||.++...|.+|.|-
T Consensus 104 Pse~YWk~lAE~RR~---AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 104 PSENYWKELAEERRK---ALEEALEENEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred ChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887653 33344433 23455666777777777766666653
No 63
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=52.74 E-value=2.3e+02 Score=27.98 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 161 KVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 161 r~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
-.|.|+|++.=+ +||=|.-+|=+|++ +--++.-+...|+..+.|.|.-|.|-...|.--.+--.--+...|..|+.|-
T Consensus 24 E~QldkLkKE~q-QrQfQleSlEAaLq-KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lE 101 (307)
T PF10481_consen 24 EQQLDKLKKERQ-QRQFQLESLEAALQ-KQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLE 101 (307)
T ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Confidence 356777776321 12222223333332 2344566666778888888888888877777777766667777888888887
Q ss_pred HHHHHHHH
Q 043286 241 VNLQHVYA 248 (298)
Q Consensus 241 a~LqQvla 248 (298)
..|.....
T Consensus 102 gQl~s~Kk 109 (307)
T PF10481_consen 102 GQLNSCKK 109 (307)
T ss_pred HHHHHHHH
Confidence 77765543
No 64
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.47 E-value=59 Score=37.02 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043286 203 NINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 203 ra~rrn~ELEErlrql~aE~Qa 224 (298)
.+..++.+|++.+.++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888877766654
No 65
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=52.40 E-value=1.2e+02 Score=27.03 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 043286 150 QRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKR 207 (298)
Q Consensus 150 qqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rr 207 (298)
..--.||+.+=....+-|+..|.+.-+.+......-+|....++..+|+.-|+++.+.
T Consensus 90 ~~RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~ 147 (154)
T PF14738_consen 90 AFREEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKE 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334689988777788889988887666666778889999999999999999998774
No 66
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=52.31 E-value=29 Score=28.00 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
+|---+.||++++.|-.|+++||+.|...
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455789999999999999999988754
No 67
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=3e+02 Score=29.04 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhHHHHH
Q 043286 153 DAEIDRFLKVQGDRLRQ 169 (298)
Q Consensus 153 ~~EID~~lr~Q~ErLR~ 169 (298)
+..+-++|..++.+.|.
T Consensus 180 ~r~~~R~v~~enkk~rq 196 (508)
T KOG0717|consen 180 DRFTRRLMERENKKQRQ 196 (508)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 68
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=51.60 E-value=1.1e+02 Score=26.92 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQS 250 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~ 250 (298)
.++-++.+.+--..|+..+.-+..|...++.++++-+.-+..|+..|...+...
T Consensus 38 ~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 38 IEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455666666677777778888888888899999999999999999998753
No 69
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=51.60 E-value=1.3e+02 Score=32.08 Aligned_cols=97 Identities=21% Similarity=0.357 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------
Q 043286 147 SELQRQDAEIDRFLKVQGDRLRQAIQEKVQAN--QLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ------- 217 (298)
Q Consensus 147 sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh--~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrq------- 217 (298)
+.++.+..+||-++++-++ ||+.|.|+...- +..-++..= ...+||=--...+|++..|-.-..+|+|-
T Consensus 240 ~DlEkkegriddllRancD-lRRQIdEqqk~LEkyKerlnkcv-~msKkLLIeKs~qEk~a~RdKsmqDrlRlGhFtTvR 317 (775)
T KOG1151|consen 240 SDLEKKEGRIDDLLRANCD-LRRQIDEQQKMLEKYKERLNKCV-TMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTVR 317 (775)
T ss_pred chhhhhcchHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHhhhhhhhhhcccccceeeee
Confidence 3467788899999998654 666676653100 000111110 22345444446788888888888888762
Q ss_pred -------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 218 -------LSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 218 -------l~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
--..+-+++.+-+..|- +|+-|..++..
T Consensus 318 hGaSFteQWtDG~AFqnl~KqqE~-iN~qReeIerq 352 (775)
T KOG1151|consen 318 HGASFTEQWTDGYAFQNLIKQQER-INSQREEIERQ 352 (775)
T ss_pred cCccHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 12456677788877765 47778877754
No 70
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.09 E-value=1.3e+02 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 190 ~~~rLReKE~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
.-.+|+.|++||++.+.-..-|..+|......+--
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999888776655443
No 71
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.84 E-value=3.1e+02 Score=27.97 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=37.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAW----QQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaW----q~~A~snEA~an~Lra~LqQv 246 (298)
+--+|||+|-..++|..+|--....-|..|-|+= +.+-+...+.+..|.++.+.+
T Consensus 155 ~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 155 QECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 4457888888888776555555555566665542 456667777888888887764
No 72
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=48.27 E-value=1e+02 Score=28.12 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043286 203 NINKRNLELEERMEQLSVE 221 (298)
Q Consensus 203 ra~rrn~ELEErlrql~aE 221 (298)
.+.++..++++++.+|..|
T Consensus 150 ~a~~~~~e~~~~l~~l~~e 168 (176)
T PF12999_consen 150 EAKKKREELEKKLEELEKE 168 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.77 E-value=2.6e+02 Score=26.71 Aligned_cols=152 Identities=16% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
++|..+.-+...||+.+ +-+.++.+..|-.........-|..=...+-+|+...+.||..+..+-.+|++.+.-+.-.-
T Consensus 55 e~le~qv~~~e~ei~~~-r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 55 EDLENQVSQLESEIQEI-RERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHH------------------HHHHHHHHHHHH----hccCCcCCCCCCCCCCCc-cccCCCCccchhh
Q 043286 223 GAWQQRARHNENMI------------------NALKVNLQHVYA----QSRDSKEGCGDSEVDDTA-SCCNGRAIDFHIL 279 (298)
Q Consensus 223 QaWq~~A~snEA~a------------------n~Lra~LqQvla----q~~~~~eg~gdse~DDA~-ScC~~~~~d~~~~ 279 (298)
..-..-....++.+ ..|..+|..-+. .-+.++.|+|-.-..+-. |.|+-.-.+.+.
T Consensus 134 ~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~~~- 212 (239)
T COG1579 134 ERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQTL- 212 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccCCeeeecHHHH-
Q ss_pred cccccccccccccccccC
Q 043286 280 CKENNDMKELMTCKMYIR 297 (298)
Q Consensus 280 ~~~~~~~k~~~~Ck~C~~ 297 (298)
..--. -.....|+-||+
T Consensus 213 ~~V~~-~d~iv~CP~CgR 229 (239)
T COG1579 213 SKVRK-KDEIVFCPYCGR 229 (239)
T ss_pred HHHhc-CCCCccCCccch
No 74
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=47.25 E-value=4.4e+02 Score=29.21 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH------HHHhhHHHHHHHH--HHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043286 148 ELQRQDAEIDRF------LKVQGDRLRQAIQ--EKVQANQ--------LQTISLVEDKVIEKLREKEAEVENINKRNLEL 211 (298)
Q Consensus 148 qLqqQ~~EID~~------lr~Q~ErLR~~L~--E~rqRh~--------r~ll~avE~~~~~rLReKE~EIera~rrn~EL 211 (298)
-|..|-.|++++ -+.+.|.||.+|. |..+.+. -.+-..=+.-+..--.+-.+++..++.+..+|
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~L 174 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEEL 174 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888 5566777775432 2212110 00000011111122233446677777777778
Q ss_pred HHHHHHHHH
Q 043286 212 EERMEQLSV 220 (298)
Q Consensus 212 EErlrql~a 220 (298)
++.|..+..
T Consensus 175 e~~L~~le~ 183 (739)
T PF07111_consen 175 EKSLESLET 183 (739)
T ss_pred HHHHHHHHH
Confidence 877766655
No 75
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=3.3e+02 Score=29.68 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
-+.++++|.+|++++++..|-..++.+|..
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777766655555555443
No 76
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=46.53 E-value=91 Score=27.60 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 166 RLRQAIQEKVQANQLQ-TISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 166 rLR~~L~E~rqRh~r~-ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
.|-..|-|-|=.|.|. |+..+|. .|++|.++|+.+++...+.++.|+
T Consensus 115 NmhhllNeyRPhQARetLi~~me~----Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 115 NMHHLLNEYRPHQARETLIMMMEE----QLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556677888888885 4455555 678999999999999988887763
No 77
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=46.40 E-value=1.2e+02 Score=25.29 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
..||.+|..|++.+..-..--..-..||..=+.----++...|+++..|.
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~ 52 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLA 52 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 35677777777766554443333333333333334444555566655544
No 78
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.17 E-value=1.2e+02 Score=22.77 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 163 QGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 163 Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
...+++.+|..--+|.+.-|+. =.+-..|.+.+.+.|.||...|+|
T Consensus 13 ~~~~~W~~L~~~l~rY~~vL~~---------R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 13 EKIRLWDALENFLKRYNKVLLD---------RAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555544444443332 224567789999999999988876
No 79
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.10 E-value=2.8e+02 Score=28.19 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=14.0
Q ss_pred ccccccCCcCCCcccccCCCCCcc
Q 043286 23 RNLYAMDGQISPPVAYYSSANNLQ 46 (298)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (298)
|+|..++|-|+.+ |.+.+-|++
T Consensus 50 ~~ll~~~GTIp~~--~~G~tYnIP 71 (365)
T KOG2391|consen 50 RLLLQLDGTIPVP--YQGVTYNIP 71 (365)
T ss_pred cchhhccCccccc--ccCCcccce
Confidence 5677888998654 555443444
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.64 E-value=4.4e+02 Score=28.77 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 212 EERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 212 EErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
..|.++|+.|...-+.=.+..|.....|...++
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555554443
No 81
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.38 E-value=62 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
++..+..||+.+.++..+|.+....|..|...+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555544444
No 82
>smart00338 BRLZ basic region leucin zipper.
Probab=45.17 E-value=1.2e+02 Score=22.24 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 043286 207 RNLELEERMEQLSVEAGAWQQRARHNENMINALKVNL 243 (298)
Q Consensus 207 rn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~L 243 (298)
...+||.++..|..|+..++.....=+.-...|+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999888877666666656665544
No 83
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=45.01 E-value=2.9e+02 Score=28.02 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
+|..+..+-++|..+...-+..-..+|+....+..+.. .. +...-..+..++..-|.++....+...+|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~-~~-l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQK-QE-LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444333333334444333322111 11 33333455566777788888899999999999987663
Q ss_pred HH-HHHH
Q 043286 221 EA-GAWQ 226 (298)
Q Consensus 221 E~-QaWq 226 (298)
.. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 33 4453
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.86 E-value=6.1e+02 Score=30.23 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNL 243 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~L 243 (298)
....+++.+..+..+.++.+..+..+...+......-|.-+..|+.+|
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443334444444444333
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.62 E-value=3.9e+02 Score=27.90 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 148 ELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQL-----QTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 148 qLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r-----~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
+++++..+.|+=+ ++++..|++.-+++.+ .++.|--+++..+|-+||.||.++...|-.|.|+.-+..
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666433 3444445444333333 233444446667889999999999998888765544433
No 86
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=43.47 E-value=2e+02 Score=24.69 Aligned_cols=20 Identities=10% Similarity=0.396 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLK 161 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr 161 (298)
...|+.-|=+-...||.||.
T Consensus 71 ~~elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 71 IKELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555556667777774
No 87
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.44 E-value=1.7e+02 Score=28.61 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
.+|++-+.||+...++..++++.+..+....
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666555443
No 88
>PHA03415 putative internal virion protein; Provisional
Probab=43.36 E-value=85 Score=35.13 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Q 043286 142 GDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEK-----------VQANQLQTISLVEDKVIEKLREKEAEVENINKRN-- 208 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~-----------rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn-- 208 (298)
.|.-++.+..-+.|.|-+++.-.|-|-++|.|+ +.+.++..=.++|+.+.+-|-..++|--+..+..
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 455678888999999999999999999999884 3445666677788888888877777777755543
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 209 LELEERMEQLSVEAGAWQQR 228 (298)
Q Consensus 209 ~ELEErlrql~aE~QaWq~~ 228 (298)
--+--.++.|..|.+.|+..
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 34566778888888888776
No 89
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.22 E-value=2.5e+02 Score=25.64 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 174 KVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 174 ~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
+.+++.....+-+...|-.-.++-++||.++.++-..|| .+.-.+..|+.+|
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le----~~~~~~k~LrnKa 153 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLE----EIQSKSKTLRNKA 153 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344444445555555666666777888888777776666 3444445555444
No 90
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=43.04 E-value=2.3e+02 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 195 REKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~ 219 (298)
+.||+|..++..+..+-++++++++
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME 125 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEME 125 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888887764
No 91
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=42.71 E-value=1.2e+02 Score=23.55 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 167 LRQAIQEKVQANQL--QTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 167 LR~~L~E~rqRh~r--~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
+|..|...|+.|.- +.++|++..--.-|| |+|+.|+.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L~-----iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDALR-----IQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHHH-----HHHHHHHHHhHHHHHHHHH
Confidence 44445454554443 456666553333333 6666666666666666554
No 92
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.62 E-value=3.2e+02 Score=26.38 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=43.9
Q ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Q 043286 150 QRQDAEIDRF---LKVQGDRLRQAIQEKVQANQLQTISLV--------EDKVIEKLRE---KEAEVENINKRNLELEERM 215 (298)
Q Consensus 150 qqQ~~EID~~---lr~Q~ErLR~~L~E~rqRh~r~ll~av--------E~~~~~rLRe---KE~EIera~rrn~ELEErl 215 (298)
+.|.+|+|.+ ++...+.|-..+++ ..+.+++++ ..++.++.++ -..||..-+.-..+|++.+
T Consensus 134 ~~qqdEldel~e~~~~el~~l~~~~q~----k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELASLSRKIQE----KKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655 44444444444433 333444432 2333333322 3457777788888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 043286 216 EQLSVEAGAWQQRAR 230 (298)
Q Consensus 216 rql~aE~QaWq~~A~ 230 (298)
.+|.+|.+.-+.-+.
T Consensus 210 ~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 210 PQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888876655544
No 93
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.27 E-value=1.6e+02 Score=22.92 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
.+..-..|++....+|.+|.+.-..|..|++--+ ...++.-.-|++=|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~---~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK---QERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3445567888888889999988999998888666 555555555555443
No 94
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.19 E-value=5e+02 Score=28.49 Aligned_cols=13 Identities=0% Similarity=0.376 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLK 161 (298)
Q Consensus 149 LqqQ~~EID~~lr 161 (298)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 4455567777774
No 95
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=41.87 E-value=56 Score=30.30 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
|=|+-+++|..++||++|..+..++..= ......-.+.+|..|+|+|.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 3355566666666666666666555432 12222233445667777764
No 96
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.60 E-value=5.5e+02 Score=28.18 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLK 161 (298)
Q Consensus 149 LqqQ~~EID~~lr 161 (298)
+.....+++.+|.
T Consensus 506 ~~~~~~~~~~li~ 518 (771)
T TIGR01069 506 YGEFKEEINVLIE 518 (771)
T ss_pred HHhhHHHHHHHHH
Confidence 3445556777664
No 97
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=39.21 E-value=2.5e+02 Score=26.58 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
+-.++...|++--.++|+=|+..-+||...-.+.. ..++. ++.++|..+..+..+|-+.+.+|..
T Consensus 80 YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~--------~~~~~-------~~~~~i~~l~~~I~~ll~~aE~LGe 144 (254)
T PF03194_consen 80 YEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQA--------KEADE-------EKAEKIDELDEKIGELLKEAEELGE 144 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--------cchhh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999888888876544321 11111 1233444444444555566666766
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 221 EAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 221 E~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
|+..=...+.. +.|..|+...+++..
T Consensus 145 eG~VdeA~~~~--~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 145 EGDVDEAQKLM--EEVEKLKEEKEELEK 170 (254)
T ss_pred CCCHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 66554433332 334455555555443
No 98
>PRK10698 phage shock protein PspA; Provisional
Probab=38.67 E-value=3.2e+02 Score=25.22 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHH
Q 043286 144 DIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVED-KVIEKLREKEA--EVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 144 ~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~-~~~~rLReKE~--EIera~rrn~ELEErlrql~a 220 (298)
.|-.+++.+...++.| +.+..+|+..|.+.+.++ ..|++-... .+.+++++.-. ....+-.+--.+|++|.++++
T Consensus 103 ~l~~~~~~~~~~~~~L-~~~l~~L~~ki~eak~k~-~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 103 TLEHEVTLVDETLARM-KKEIGELENKLSETRARQ-QALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 3444555555555554 567788888888875444 344443333 22333433321 223444555668889988888
Q ss_pred HHHHH
Q 043286 221 EAGAW 225 (298)
Q Consensus 221 E~QaW 225 (298)
++++-
T Consensus 181 ~aea~ 185 (222)
T PRK10698 181 EAESH 185 (222)
T ss_pred HHhHh
Confidence 88773
No 99
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=38.28 E-value=66 Score=34.86 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHH
Q 043286 160 LKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINK-------RNLELEERME 216 (298)
Q Consensus 160 lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~r-------rn~ELEErlr 216 (298)
+.-+.+.+.++|++.+++|.+.|-+. .+ ...|+++|.||-.+.. .-|-||-||.
T Consensus 369 V~~~ia~~~AEIekmK~~Hak~m~k~-k~--~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 369 VAKKIADMNAEIEKMKARHAKRMAKF-KR--NSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hh--ccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 44566677777877777777655332 22 2456677777655544 4577887777
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.89 E-value=5.3e+02 Score=27.56 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=31.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVEA-GAWQQRAR 230 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE~-QaWq~~A~ 230 (298)
..+|=++++|+.-+.++...||+.++.|..|+ +.|-.+++
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46788889999999999999999999888886 34544443
No 101
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=37.76 E-value=2.7e+02 Score=24.06 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
.++.+.|.+=..|+++|++....+-...- +.-. ..+.+++.....-.++++++..+.++.
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k---------~~ae-----------~a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEK---------QEAE-----------AAEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 35888888888899998887765554311 1111 234455556666667777777777665
Q ss_pred H------HHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 223 G------AWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 223 Q------aWq~~A~snEA~an~Lra~LqQvl 247 (298)
. ....+++.-..+ +.+|+.-+
T Consensus 83 ~~r~yk~eYk~llk~y~~~----~~~L~k~I 109 (126)
T PF09403_consen 83 KVRWYKDEYKELLKKYKDL----LNKLDKEI 109 (126)
T ss_dssp GGSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3 344555444444 44454443
No 102
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=2.8e+02 Score=27.20 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHhhHHHHHHH
Q 043286 183 ISLVEDKVIEKLREKEAEVENINKRNL--ELEERMEQLSVEAGA-WQQRARHNENMINAL 239 (298)
Q Consensus 183 l~avE~~~~~rLReKE~EIera~rrn~--ELEErlrql~aE~Qa-Wq~~A~snEA~an~L 239 (298)
+++.|..+.+-++.+|-=.|+-.++.. +-++-.-.-..+.-+ |-.++.-++|.-..+
T Consensus 154 ~s~~E~~i~k~~~~~e~i~e~k~kk~v~~~~~~v~~e~~e~~~~K~D~~~~~~~a~~r~~ 213 (279)
T COG5484 154 YSAREAFIDKLTTKQEMIKELKGKKSVLSEYEEVEVEEAEGVFAKWDRMLLLENAQTRAM 213 (279)
T ss_pred hhHHHHHHHHhhhhhhhhhhhhccceeeeeehhhhhHHHhhhhhccchhhchhHHHHHHH
Confidence 456666666666666652222222211 111111222223334 888888888875443
No 103
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.32 E-value=2.7e+02 Score=24.05 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 184 SLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 184 ~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
..+| ..-+|+.--|+|++.+.++..+..++|+++...+...-+..+.=|.-...+-..++.+-
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445 67788999999999999999999999998888888777776666666555555555543
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.23 E-value=2.6e+02 Score=27.23 Aligned_cols=87 Identities=25% Similarity=0.490 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQGDRLR------QAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEER 214 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q~ErLR------~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEEr 214 (298)
+-+.+..++++-..|.|.|...- +++. ..+.+ -..-..-+..-|....+.|++.|.|-+.+.+...+|++.
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL-~~l~~~~~~~~~~~~--~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFL-KKLEEESDSEEDIEE--LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp ---------------------------------HH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777776432 1111 11111 111122345556677888999999999999988899888
Q ss_pred HHHHH-HHHHHHHHHHH
Q 043286 215 MEQLS-VEAGAWQQRAR 230 (298)
Q Consensus 215 lrql~-aE~QaWq~~A~ 230 (298)
.+.+. .|.+.|+....
T Consensus 87 ~~~l~~eE~~~~~~~n~ 103 (314)
T PF04111_consen 87 LEELDEEEEEYWREYNE 103 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88875 45577776554
No 105
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.77 E-value=8e+02 Score=29.29 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
.++.+.+++++.+..+..++++.+..+..+-..|+..-..-+.....+.+.+.
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~ 414 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAI 414 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777777777777777775443333444444444443
No 106
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.95 E-value=1.6e+02 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 190 ~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
+-++|.+-+.|||.+..+.+.|++++.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677778888888888888887764
No 107
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.58 E-value=5.2e+02 Score=29.80 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 164 GDRLRQAIQEKVQA----NQLQTISLVEDKV---IEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 164 ~ErLR~~L~E~rqR----h~r~ll~avE~~~---~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
.-++|..|.|++-- -+..-|..++.++ ..-||.||.|.+..-- .|+..|.+|+.|.-.|..++.+
T Consensus 980 e~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmd---aLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 980 EAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMD---ALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhh
Confidence 45778888876422 1222233332222 2246666666665543 6778888999999999988744
No 108
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=35.49 E-value=1.3e+02 Score=25.24 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhH--H----HHHHHHHHHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQANQL--QTISLVEDKVIEKLREKE--A----EVENINKRNLELEERMEQ 217 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rqRh~r--~ll~avE~~~~~rLReKE--~----EIera~rrn~ELEErlrq 217 (298)
.-||+||.++ .+|+-+|-.+.. +++.-+|- +.--|+.|- + =+++++++..||++.+|.
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlEG-iLttLk~K~~deri~~Lle~Vr~~R~ele~~fRK 86 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLEG-ILTTLKLKYEDERIGELLEKVRARREELEELFRK 86 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHHH-HHHHHTTT---HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4699999877 457776666665 46666664 444555553 2 245667777777777664
No 109
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=35.15 E-value=4.5e+02 Score=28.11 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 148 ELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 148 qLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
.++|+-.++.+=|....+++-....|. +...+.+...+ ..+..||-.-|.+++.....-..|++.+..|..-...|.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~-~~~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAEL-RVKTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 345555566554544444555555555 22333333333 345667888889999999999999999988776666675
No 110
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=35.13 E-value=2.2e+02 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 043286 139 SFIGDDIDSELQRQDAEIDRFLK 161 (298)
Q Consensus 139 s~l~d~L~sqLqqQ~~EID~~lr 161 (298)
++.++.|+.-|..-.+|++++=-
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~~ 31 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMKM 31 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888886543
No 111
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=35.09 E-value=3.3e+02 Score=24.33 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
+.++-..++.|-.+||-+++++..=..--..++-.=..+.+.|.+.|.++..
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334445566677888888887766655555666666777899999988854
No 112
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.91 E-value=7.2e+02 Score=28.16 Aligned_cols=18 Identities=11% Similarity=-0.162 Sum_probs=12.3
Q ss_pred cCCCCcccccchhhhhhh
Q 043286 83 NSGLEPKRKRLKEQDFLE 100 (298)
Q Consensus 83 ~~~~~p~rKR~re~~~~~ 100 (298)
.|..+|.|--|.+....+
T Consensus 698 e~~~pP~~~~P~p~~~ds 715 (1187)
T KOG0579|consen 698 EYFDPPRRNGPEPPVDDS 715 (1187)
T ss_pred cccCChhhcCCCCCCCcc
Confidence 577788877777665554
No 113
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.76 E-value=4.3e+02 Score=25.60 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=49.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 043286 155 EIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELE-------ERMEQLSVEAGAWQQ 227 (298)
Q Consensus 155 EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELE-------Erlrql~aE~QaWq~ 227 (298)
+|..-|+.-...+...++.. +++..=|.+=|...-.|+..|-.|+||..||..-|+ +-..+++.|=+.--.
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~--~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQT--QQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544432 223333444556677889999999999999988775 334455555443322
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 043286 228 RARHNENMINALKVNLQHV 246 (298)
Q Consensus 228 ~A~snEA~an~Lra~LqQv 246 (298)
.=-..-=....|...|+.-
T Consensus 240 ~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 240 IYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 2222222334566665543
No 114
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.72 E-value=2.4e+02 Score=22.66 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 200 EVENINKRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
|...+...+-+|+-+-.||..|-..||.+-++
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677888888999999999987653
No 115
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.99 E-value=1.4e+02 Score=21.92 Aligned_cols=41 Identities=29% Similarity=0.474 Sum_probs=29.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHN 232 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~sn 232 (298)
..+.+.+.+|+.+..+|.+|++.+..+......=..+|+.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667888888999999999999998844444445555543
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.95 E-value=3.6e+02 Score=24.45 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLK 161 (298)
Q Consensus 149 LqqQ~~EID~~lr 161 (298)
.+.-+.+|+.+|.
T Consensus 36 ~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 36 NEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555554
No 117
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.82 E-value=1.2e+02 Score=23.21 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043286 186 VEDKVIEKLREKEAEVENINKRNLELE 212 (298)
Q Consensus 186 vE~~~~~rLReKE~EIera~rrn~ELE 212 (298)
+..-=+.-|+.--+||+++.++|.||.
T Consensus 15 Lq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 15 LQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344445567788899999999999986
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.79 E-value=4.4e+02 Score=25.42 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 146 DSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 146 ~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
...|+....|++..=+...+.+|..|.+. ..-=..-.+.|-+.+.+++...-+..++.+....+..|-..+
T Consensus 193 ~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~---------~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 193 LENLKQLVEEIESCDQEELEALRQELAEQ---------KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----hhHHHHHHHHHHHHHH
Q 043286 226 QQRAR----HNENMINALKVNLQHV 246 (298)
Q Consensus 226 q~~A~----snEA~an~Lra~LqQv 246 (298)
..+-. ....-+..|++.++.+
T Consensus 264 ~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 264 EKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
No 119
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.37 E-value=6.8e+02 Score=27.46 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 043286 146 DSELQRQDAEIDR 158 (298)
Q Consensus 146 ~sqLqqQ~~EID~ 158 (298)
...|++++.+++.
T Consensus 517 i~~L~~~~~~~e~ 529 (771)
T TIGR01069 517 IEKLSALEKELEQ 529 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 120
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=33.27 E-value=7.2e+02 Score=27.66 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=70.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 161 KVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 161 r~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
+-|.+.|+-.|..+ +.|.-.|.+-||+ ..-+|-+|+..|++....+.++++-...+..|...-.+...-.+.-++.|+
T Consensus 321 r~hi~~lkesl~~k-e~~~~~Lqsdve~-Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAK-EQEAEMLQSDVEA-LRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888877553 4555566677776 456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 043286 241 VNLQHV 246 (298)
Q Consensus 241 a~LqQv 246 (298)
.+++.+
T Consensus 399 ~kie~L 404 (775)
T PF10174_consen 399 KKIENL 404 (775)
T ss_pred HHHHHH
Confidence 996544
No 121
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.09 E-value=4.9e+02 Score=25.86 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHH
Q 043286 170 AIQEKVQANQLQTISLVEDKVIEKLREKEAEVEN----INKRNLELEERMEQLSV 220 (298)
Q Consensus 170 ~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIer----a~rrn~ELEErlrql~a 220 (298)
+|.|. |+...+|=-.||- +...|-+||.-|.+ |+..|..||-.|..+++
T Consensus 118 ALKEA-RkEIkQLkQvieT-mrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 118 ALKEA-RKEIKQLKQVIET-MRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHH-HHHHHHHHHHHHH-HHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 56665 3444444333433 23356688998886 89999999988887654
No 122
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.06 E-value=6.4e+02 Score=27.01 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=5.2
Q ss_pred HHHHHhHHHHHHH
Q 043286 192 EKLREKEAEVENI 204 (298)
Q Consensus 192 ~rLReKE~EIera 204 (298)
.|+++-|++|..+
T Consensus 220 ~ri~~LEedi~~l 232 (546)
T PF07888_consen 220 QRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 123
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.60 E-value=3.4e+02 Score=23.69 Aligned_cols=51 Identities=12% Similarity=0.297 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQL--QTISLVEDKVIEKLRE 196 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r--~ll~avE~~~~~rLRe 196 (298)
|=.|+..|.++..+||.=| +.|+..|.+..+.+.- .++..+-.....+++.
T Consensus 20 gC~i~~~L~k~~~~v~~~i----~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKDI----QELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHccchHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 4467888888888887544 5677777666554444 4677777777777766
No 124
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.37 E-value=2.4e+02 Score=28.15 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=34.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 155 EIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 155 EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
.+.++|-.++|.|-+..+-+++ ...++-.+=+ -++|+-||.+||.|.++|.-.|.|.+.
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k--~~e~~qkl~s-r~~~~~ekke~i~r~n~k~~d~v~~~~ 67 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLK--TKEKNQKLYS-RAQRHQEKKEKIQRHNRKLGDLVEKKT 67 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHhhhhcchHHHHHH
Confidence 3445566666666665544321 1111111111 357899999999999998777776554
No 125
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=32.33 E-value=5.4e+02 Score=25.93 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=48.2
Q ss_pred cccccccccccCCCccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 043286 121 GLSLDNTRMASSADSALLSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAE 200 (298)
Q Consensus 121 rLs~d~~~~~ss~~s~~~s~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~E 200 (298)
|++-+|.+ .|.||+--|.|+||... .+ .++|.|++|.-|..+.+-+..+ .+.|..+-...-+...+
T Consensus 126 rv~d~d~~---~G~Ss~Q~F~GEDl~~~-~R--------~k~Q~eQ~R~Wl~qQ~~E~~~a--~~~ek~ae~~~~~~~~~ 191 (379)
T PF05914_consen 126 RVSDDDPR---CGPSSLQKFDGEDLNRE-ER--------KKLQQEQMREWLEQQMEEKQQA--RAEEKEAEMLYDQQRLE 191 (379)
T ss_pred CCCccCCc---cCchhccccccccCCHH-HH--------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44555555 34455556889998644 11 2566666666665543222221 12222222333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 043286 201 VENINKRNLELEERMEQLSVEAGAWQQRARHNENMINAL 239 (298)
Q Consensus 201 Iera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~L 239 (298)
++........+|+.-|.... ..++.+|-+.|+-.
T Consensus 192 ~d~~a~eL~~~ee~~Rra~~-----~a~~~fN~~~A~E~ 225 (379)
T PF05914_consen 192 QDRRALELQKLEEECRRAIC-----RATKEFNKAQAAEK 225 (379)
T ss_pred HHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 55555555555554443322 33455555555443
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.26 E-value=66 Score=30.50 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 202 ENINKRNLELEERMEQLSVEAGAWQQ 227 (298)
Q Consensus 202 era~rrn~ELEErlrql~aE~QaWq~ 227 (298)
+|.+.||.|||+.++++..+...-+.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.78 E-value=5.3e+02 Score=25.69 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=40.3
Q ss_pred HHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENIN--------KRNLELEERMEQLSVEAGAW-QQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 190 ~~~rLReKE~EIera~--------rrn~ELEErlrql~aE~QaW-q~~A~snEA~an~Lra~LqQvl 247 (298)
..+||....-|-+.+. .....|.-+|.+|..|.-.- ..+.+..|.+|+-|+..|+.+-
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3466655444444442 33457888899998886544 4567778999999999999885
No 128
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.73 E-value=1.7e+02 Score=26.88 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQE 173 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E 173 (298)
.+|+. +....+.++..+.+
T Consensus 37 ~~~~~-l~~~i~~l~~ei~e 55 (191)
T PRK14140 37 ELLDE-EQAKIAELEAKLDE 55 (191)
T ss_pred hHHHH-HHHHHHHHHHHHHH
Confidence 34554 33333444444433
No 129
>PF15294 Leu_zip: Leucine zipper
Probab=31.73 E-value=5e+02 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 209 LELEERMEQLSVE-AGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 209 ~ELEErlrql~aE-~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
.+||..+..+..| ..+-.+....+.++-..|...+.+++.
T Consensus 193 ~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~ 233 (278)
T PF15294_consen 193 SDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLR 233 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888888777 555666666777777777776666664
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.71 E-value=3.1e+02 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
.|+...+-.+..||++++.|..|+..
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777777777777754
No 131
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.53 E-value=6.5e+02 Score=26.67 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 214 RMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 214 rlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
+|++++.+-++--.-+.+||.++..|++.|+..
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344455555555555677888888888888754
No 132
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.41 E-value=1.7e+02 Score=30.63 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
..|++.+.+++.++|++|+.++.|...-+
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 45666666777788888887766655443
No 133
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=31.05 E-value=3.4e+02 Score=25.38 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 160 LKVQGDRLRQAIQEKVQANQLQTISL-VED--------KVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 160 lr~Q~ErLR~~L~E~rqRh~r~ll~a-vE~--------~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
++.+.|+||..|..-|+++-.....- -|+ .|++==|+--.--=.|-+||..||..|++
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~q 202 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELRQ 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678888888887766555543332 222 22333333333334578889999888764
No 134
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.82 E-value=6.6e+02 Score=26.49 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
++=|+|..|+|+..-+...|++-...|..
T Consensus 290 k~eReasle~Enlqmr~qqleeentelRs 318 (502)
T KOG0982|consen 290 KKEREASLEKENLQMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666655555555544444433
No 135
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=30.50 E-value=65 Score=30.99 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 206 KRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 206 rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
....+|+|+|++|..|.++|..+.+.
T Consensus 164 ~~i~~Lee~I~rLk~E~~~W~~~l~~ 189 (301)
T PF08202_consen 164 ENIAELEEKIKRLKEERQAWAQLLKP 189 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 45679999999999999999988843
No 136
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=30.44 E-value=1e+02 Score=26.58 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 159 FLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLR 195 (298)
Q Consensus 159 ~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLR 195 (298)
.++...++.++.+.| .-|..|+.++.+|..+.|+|=
T Consensus 90 ~~~a~i~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~ 125 (136)
T PRK13447 90 RLEAVVRAVRAAQLD-AARRARVEQTRLHAQAVRQLL 125 (136)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 356667777888888777763
No 137
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.91 E-value=3.3e+02 Score=24.18 Aligned_cols=84 Identities=14% Similarity=0.318 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQANQL-QTISLVEDKV-IEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rqRh~r-~ll~avE~~~-~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
.-++.|+.+++|=.+ +.+-...|+. .|+..+..++ ++|=|--.+|-...+++.-.|| -..|+.++..
T Consensus 39 ~av~~Ll~~eneP~~--v~~WI~~Hmsp~L~~klkQaIRArRKRhFNaE~qhTrKKSIDLe---------y~VW~rLs~~ 107 (149)
T COG3120 39 EAVQQLLSLENEPVK--VNEWIDAHMSPELVNKLKQAIRARRKRHFNAEHQHTRKKSIDLE---------YAVWQRLSGL 107 (149)
T ss_pred HHHHHHHHhcCCcHH--HHHHHHHhcCHHHHHHHHHHHHHHHHhhccHhhhhhhhccccHH---------HHHHHHHHHH
Confidence 345566666665544 3344445554 4555555544 3455555666666666555554 4457777777
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043286 232 NENMINALKVNLQHVYA 248 (298)
Q Consensus 232 nEA~an~Lra~LqQvla 248 (298)
-.-+-.+|-.++.+++.
T Consensus 108 a~~~g~TLSetI~~li~ 124 (149)
T COG3120 108 ARRRGKTLSETIVYLIE 124 (149)
T ss_pred HHHhcCcHHHHHHHHHH
Confidence 66666666666666654
No 138
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.91 E-value=3.6e+02 Score=31.21 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=44.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCcCCCCCC
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSRDSKEGCGDS 260 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~~~~~eg~gds 260 (298)
|.||-+-+-+++.....|+.++..|..|.+.|..-|+.-...+.-|.+--+++-.-...-+|..+|+
T Consensus 193 lEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs 259 (1195)
T KOG4643|consen 193 LEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDS 259 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhh
Confidence 3344455555666666788899999999999999999988886665554444433332334444554
No 139
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.86 E-value=4.4e+02 Score=24.16 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043286 143 DDIDSELQRQDAEIDRFLKVQGD------------------------RLRQAIQEKVQANQLQTISLVEDKVIEKLREKE 198 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~Q~E------------------------rLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE 198 (298)
+.|..+|+++-.|.+.+|....- .|+..|... +....-+..+-..+..-|.||.
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a--~~nl~~a~~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAA--QANLANAEQVAEGAQQELAEKT 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889998999988875532 233322221 1111112222234455677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
.-|+.+++|...|...|.....+-..
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665555443
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.71 E-value=7.2e+02 Score=26.61 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 177 ANQLQTISLVED---KVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 177 Rh~r~ll~avE~---~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
+++...++.+|. -+.+|.+.-|+|+.++++.|.-|.+-|..+..+-+.=.-+=...+.-+..|.-.|+
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334555666665 34567788899999999999888888887776555444444444555555554443
No 141
>KOG0795 consensus Chorismate mutase [Amino acid transport and metabolism]
Probab=29.71 E-value=5.2e+02 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHH
Q 043286 165 DRLRQAIQEKVQANQLQT--ISLVEDKVIEKLREKEA 199 (298)
Q Consensus 165 ErLR~~L~E~rqRh~r~l--l~avE~~~~~rLReKE~ 199 (298)
+.-..++..+-+...+.+ -.+||+++.+||.-|-+
T Consensus 175 ~~Ye~aIkaqD~~~lm~~lt~~~vEe~vkkRv~~Ka~ 211 (262)
T KOG0795|consen 175 EAYEKAIKAQDREGLMKLLTFEAVEEKVKKRVEKKAE 211 (262)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444555544555544 37899999999876643
No 142
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.45 E-value=3.1e+02 Score=22.21 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 195 REKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
.+|+.||.++......|...+..+....
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444433
No 143
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=29.44 E-value=4.1e+02 Score=23.65 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=22.3
Q ss_pred CccchhhhhhhHHHHHHHHHHHHHHHHH
Q 043286 134 DSALLSFIGDDIDSELQRQDAEIDRFLK 161 (298)
Q Consensus 134 ~s~~~s~l~d~L~sqLqqQ~~EID~~lr 161 (298)
+..+++...+.|++-|-+--..||.||.
T Consensus 50 pa~p~~~~~~~laa~i~~~akqId~LId 77 (139)
T KOG1510|consen 50 PAEPFEEYAQLLAADIAKKAKQIDTLID 77 (139)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888899999985
No 144
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=29.41 E-value=1.8e+02 Score=24.64 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 177 ANQLQTISLVEDKV---IEKLREKE--AEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 177 Rh~r~ll~avE~~~---~~rLReKE--~EIera~rrn~ELEErlrql~aE~ 222 (298)
++......++++-+ -++||+-. +.+++--++..|+++.||++.+..
T Consensus 52 ~Q~~q~~e~~~Rev~~L~~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~ 102 (106)
T PF03528_consen 52 LQWQQYRESEEREVAKLQRRLREGQELENLEKSMKKAQEDEEKLRSVVMPM 102 (106)
T ss_dssp ----------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 33344444444443 24678777 899999999999999999987654
No 145
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=29.38 E-value=4.3e+02 Score=23.84 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 043286 176 QANQLQTISLVED 188 (298)
Q Consensus 176 qRh~r~ll~avE~ 188 (298)
+++...||..++.
T Consensus 40 ~~qA~~Il~~Ae~ 52 (191)
T PF06188_consen 40 RQQAEQILQQAEE 52 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 146
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.30 E-value=54 Score=30.99 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=11.2
Q ss_pred CCCCccc--cCCCCccchhhcccccccccccccccccC
Q 043286 262 VDDTASC--CNGRAIDFHILCKENNDMKELMTCKMYIR 297 (298)
Q Consensus 262 ~DDA~Sc--C~~~~~d~~~~~~~~~~~k~~~~Ck~C~~ 297 (298)
.++...| ||+.+. +..+.+...+.+..+.|-.|+.
T Consensus 169 ~w~~g~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t 205 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGT 205 (290)
T ss_dssp -TT-SS-TTT---EE-EEEEE------EEEEEETTT--
T ss_pred CccCCcCCCCCCcCc-eEEEecCCCCccEEEEcCCCCC
Confidence 3455677 777652 2222222212346667777764
No 147
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.29 E-value=3.3e+02 Score=22.48 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHH
Q 043286 180 LQTISLV--EDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQ-----QRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 180 r~ll~av--E~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq-----~~A~snEA~an~Lra~LqQvla 248 (298)
..++++. +..+.++|...-++ ++++..++-.+|+.|..++..-. ...+........|...+..++.
T Consensus 30 ~~~~t~~~~~~~~~~~l~~~~~~---~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~ 102 (151)
T cd00179 30 SQLLTAPDADPELKQELESLVQE---IKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMT 102 (151)
T ss_pred HHHHhcCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 33444444444443 44444466666666655442211 1234555666666666666543
No 148
>PRK02224 chromosome segregation protein; Provisional
Probab=29.28 E-value=7.5e+02 Score=26.66 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
+-.+.+.|+....+..+|++++..+..+.+.|...|..-++....+.
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 571 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44556678888888889999999999999999987776665554443
No 149
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=29.17 E-value=2.5e+02 Score=24.71 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 043286 201 VENINKRNLELEERME 216 (298)
Q Consensus 201 Iera~rrn~ELEErlr 216 (298)
...+.+|..+|+.+|+
T Consensus 56 q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 56 LARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445554444
No 150
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=28.93 E-value=2.7e+02 Score=22.80 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQ 163 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q 163 (298)
+-..|.+|.++|+.-|-+|+++.
T Consensus 3 VH~aItaH~~Kq~~~~k~F~~Le 25 (84)
T PF10752_consen 3 VHKAITAHSQKQHAIIKQFLQLE 25 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999865
No 151
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.77 E-value=5e+02 Score=24.46 Aligned_cols=85 Identities=16% Similarity=0.310 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHH-----HHHHH
Q 043286 148 ELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKL------REKEAEVENINKRNLEL-----EERME 216 (298)
Q Consensus 148 qLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rL------ReKE~EIera~rrn~EL-----EErlr 216 (298)
+|-.-...|..+..-|+++.-..|.|- =.-+..++.+|-.....|. ...+.+|.+-+-....| .+++-
T Consensus 84 ~laev~~~i~~~~~~qa~qd~~~f~e~-l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~ 162 (234)
T cd07665 84 QLAEVEEKIEQLHQEQANNDFFLLAEL-LADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQ 162 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344444677777788888888777775 3556666677655554442 23344443322222222 47888
Q ss_pred HHHHHHHHHHHHHHhhH
Q 043286 217 QLSVEAGAWQQRARHNE 233 (298)
Q Consensus 217 ql~aE~QaWq~~A~snE 233 (298)
++..|...|..++..-+
T Consensus 163 ~a~~Ev~e~e~k~~~a~ 179 (234)
T cd07665 163 QAKDEIAEWESRVTQYE 179 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776543
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.64 E-value=1.8e+02 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQ 227 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~ 227 (298)
.+.+++..|..+...+..|+++++.+..|-.....
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655544433
No 153
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.40 E-value=2.4e+02 Score=20.65 Aligned_cols=17 Identities=41% Similarity=0.607 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043286 210 ELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 210 ELEErlrql~aE~QaWq 226 (298)
+||+++..|..|+..+.
T Consensus 30 ~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 30 ELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 154
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.28 E-value=4.4e+02 Score=23.76 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 187 EDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 187 E~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
+..|.=.|=.---|||.+..+...||.+|.+++
T Consensus 113 d~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 113 DDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566788888888888888888743
No 155
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=27.96 E-value=2.9e+02 Score=24.99 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 043286 181 QTISLVEDK 189 (298)
Q Consensus 181 ~ll~avE~~ 189 (298)
..++.+|+.
T Consensus 40 ~avSL~erQ 48 (225)
T PF04340_consen 40 GAVSLVERQ 48 (225)
T ss_dssp -HHHHHHHH
T ss_pred CcccHHHHH
Confidence 366666664
No 156
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=27.82 E-value=1.9e+02 Score=25.43 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQL 218 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql 218 (298)
+|-..++.+-..||.||+.|
T Consensus 47 aeY~aAk~~~~~~e~rI~~L 66 (157)
T PRK01885 47 ADYIYGKKRLREIDRRVRFL 66 (157)
T ss_pred hcHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444443
No 157
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=27.80 E-value=1.8e+02 Score=25.57 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~ 219 (298)
+|-..++++-++|+.||+.|.
T Consensus 45 aeY~aak~~~~~le~rI~~L~ 65 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFLT 65 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 455555666666666665443
No 158
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=3.9e+02 Score=22.86 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 171 IQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 171 L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
+.++-+|+.+.++.-.+-+--.-+-+-.++|+++.++...||+.++
T Consensus 62 ~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 62 LEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666666666622223366788899999999999999875
No 159
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=27.66 E-value=6.4e+02 Score=27.07 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
|++.++++.++.++...|+-.|+...--..+=...-+.-|+--+.|-.+.+++
T Consensus 51 ~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 51 LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555566666666666665555444333333333333344444444444443
No 160
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.39 E-value=4.1e+02 Score=22.97 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 165 DRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 165 ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
-+|...++++ =++....|+.=+.+..+|+|+-|.+++++..... +|-+++...+..-.+ ...=......++..|+
T Consensus 30 l~Lc~R~Q~H-L~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~---erqk~~~k~ae~L~k-v~els~~L~~~~~lL~ 104 (131)
T PF10158_consen 30 LRLCSRYQEH-LNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV---ERQKRFAKFAEQLEK-VNELSQQLSRCQSLLN 104 (131)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444455553 2344456666677889999999999998887444 444444444443333 3333344556666666
Q ss_pred HHHH
Q 043286 245 HVYA 248 (298)
Q Consensus 245 Qvla 248 (298)
+.+.
T Consensus 105 ~~v~ 108 (131)
T PF10158_consen 105 QTVP 108 (131)
T ss_pred HHHH
Confidence 6654
No 161
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=26.98 E-value=4.4e+02 Score=23.27 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 149 LqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
+-.|..-.|+.=--|...+|..|.|. .+....+...--..+.+++.+=+.|++++..+..+||++.+..+.|...
T Consensus 31 ~~~q~~AsdqWa~YQAKsiK~~l~e~-~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 31 VIAQAEASDQWAYYQAKSIKQHLAEL-AADLLELELAARAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666778888888999999999886 3333333322245666777788889999999999999988888777654
No 162
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=26.97 E-value=3.5e+02 Score=22.11 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAI 171 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L 171 (298)
.++|..|.-...+.+...
T Consensus 11 ~ev~~~i~k~~~~~~~~~ 28 (125)
T PF14265_consen 11 EEVDKIIKKRLARWEKKQ 28 (125)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347777766555555443
No 163
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=26.93 E-value=2.2e+02 Score=31.05 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 043286 183 ISLVEDKVIEKLR 195 (298)
Q Consensus 183 l~avE~~~~~rLR 195 (298)
-.++|+.-..||.
T Consensus 640 ~a~~ERee~eRl~ 652 (940)
T KOG4661|consen 640 KAAVEREELERLK 652 (940)
T ss_pred HHHHHHHHHHHHH
Confidence 3456665444443
No 164
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=26.89 E-value=89 Score=24.82 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=44.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
..+|+|.=.|.+|+.+.-.|-.|.|.+.|+- ..|...=...+|+++.|-..|..+
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL---~~W~~~~g~~~At~~~L~~aLr~~ 70 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQML---KVWKERGPRPYATLQHLLSVLRDM 70 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHHH---HHHHHhcCCCcchHHHHHHHHHHc
Confidence 4678899999999999999988888887775 679887666688888887777654
No 165
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.60 E-value=3.8e+02 Score=25.39 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEK 174 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~ 174 (298)
.++.. +..+.+.|+..+.+.
T Consensus 67 ~~~~~-l~~el~~l~~e~~el 86 (238)
T PRK14143 67 ARLAQ-LEQELESLKQELEEL 86 (238)
T ss_pred hHHHH-HHHHHHHHHHHHHHH
Confidence 45554 344556666666554
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.57 E-value=5.1e+02 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043286 201 VENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 201 Iera~rrn~ELEErlrql~aE~ 222 (298)
++.......+|++..++|..|-
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 167
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.52 E-value=4.5e+02 Score=26.83 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 182 TISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 182 ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
-+...|.....+++++..+|++..++..++|.++.+
T Consensus 332 ~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 332 RLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666666666666666655555555544
No 168
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=26.22 E-value=74 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
.+...|.+||.||+++.+ ||..+||
T Consensus 400 ~~~e~i~~kE~eLe~L~~---elDdkvR 424 (492)
T PF06273_consen 400 SLREEISQKEKELEKLTR---ELDDKVR 424 (492)
T ss_pred hHHHHHHHHHHHHHHHHH---Hhhcccc
Confidence 445566677777766665 6666665
No 169
>PRK09098 type III secretion system protein HrpB; Validated
Probab=26.21 E-value=5.4e+02 Score=24.00 Aligned_cols=14 Identities=0% Similarity=-0.028 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 043286 178 NQLQTISLVEDKVI 191 (298)
Q Consensus 178 h~r~ll~avE~~~~ 191 (298)
....||..+...+.
T Consensus 51 ~A~~Il~~A~~~A~ 64 (233)
T PRK09098 51 RAERIVAEARAQAE 64 (233)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 170
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=26.09 E-value=3.3e+02 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=27.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043286 162 VQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRN 208 (298)
Q Consensus 162 ~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn 208 (298)
.+.|++...|+++.. +-++..+.+.|+.---||.|+++..
T Consensus 14 ~~~ee~~~~~q~~~e-------~eA~kkA~K~lkKN~rEIkRL~~HA 53 (109)
T PHA02571 14 EEVEELLSELQARNE-------AEAEKKAAKILKKNRREIKRLKKHA 53 (109)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334455555555433 5678888888998888988887754
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.76 E-value=6.3e+02 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLKVQGDRLRQAIQE 173 (298)
Q Consensus 149 LqqQ~~EID~~lr~Q~ErLR~~L~E 173 (298)
+..-..|+.. +..+.+.+...|++
T Consensus 45 ~~~~~~el~~-le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 45 IEELEEELEK-LEQEEEELLQELEE 68 (314)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333444444 23344444444444
No 172
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=25.58 E-value=78 Score=32.39 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE 221 (298)
++|++.=.|+..|||+|+++|++|
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556677888888888887
No 173
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=25.58 E-value=3e+02 Score=20.90 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKR 207 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rr 207 (298)
.-||.||.+ ||..|.++.. .++..+-.-.-+.|..+-.+||.+.|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788775 6777766532 556666555566777777888887765
No 174
>PRK14127 cell division protein GpsB; Provisional
Probab=25.47 E-value=2.1e+02 Score=24.15 Aligned_cols=9 Identities=44% Similarity=0.829 Sum_probs=6.3
Q ss_pred HHHHHHHHH
Q 043286 154 AEIDRFLKV 162 (298)
Q Consensus 154 ~EID~~lr~ 162 (298)
.|+|.||..
T Consensus 26 ~EVD~FLd~ 34 (109)
T PRK14127 26 DEVDKFLDD 34 (109)
T ss_pred HHHHHHHHH
Confidence 578888754
No 175
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=25.38 E-value=3.5e+02 Score=21.59 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 184 SLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 184 ~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
..++..+.....+-+.+++.+.....++.+.+..+..|
T Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 117 (120)
T PF11740_consen 80 EEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAE 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555544
No 176
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.36 E-value=1.6e+02 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~ 222 (298)
++|+.+..+...++.++.-+..+.
T Consensus 77 ~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 77 EELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 177
>PHA02107 hypothetical protein
Probab=25.35 E-value=1.8e+02 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 186 VEDKVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 186 vE~~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
+=--...||.|-|+||.++.-+..|.|+-++.+
T Consensus 178 ~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~I 210 (216)
T PHA02107 178 VFHFASVRISEIDEEIKELQARRKEIEDNIKSI 210 (216)
T ss_pred HhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333456899999999999999999999988765
No 178
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.92 E-value=2.4e+02 Score=27.99 Aligned_cols=50 Identities=32% Similarity=0.382 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Q 043286 202 ENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSR 251 (298)
Q Consensus 202 era~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~~ 251 (298)
+.++.+..++|+|+..++-........-...+-....|...|+..=..++
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35667888899999988888888877777778777888888887765544
No 179
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.69 E-value=1.6e+02 Score=22.33 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 207 RNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 207 rn~ELEErlrql~aE~QaWq~~A~ 230 (298)
|.+.||.||...+.+++.-...++
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 180
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.68 E-value=4.5e+02 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043286 204 INKRNLELEERMEQLSVE 221 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE 221 (298)
+.++..+|++.|....+|
T Consensus 158 ~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 158 LEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334444555555555443
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=24.17 E-value=6.8e+02 Score=28.16 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=50.2
Q ss_pred HHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 043286 161 KVQGDRLRQAIQEKVQA------NQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNEN 234 (298)
Q Consensus 161 r~Q~ErLR~~L~E~rqR------h~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA 234 (298)
..+++++-..|+..|+| |...|...|++...--|+|--+-++++++.-.||+-.-+++..=..+=-.+...+|.
T Consensus 169 ~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34566666666666554 445566777766666666666777777777777766555555544444444444443
Q ss_pred HHHHHHHHHHHHHH
Q 043286 235 MINALKVNLQHVYA 248 (298)
Q Consensus 235 ~an~Lra~LqQvla 248 (298)
||..++|+-.
T Consensus 249 ----Lr~e~~qL~~ 258 (916)
T KOG0249|consen 249 ----LRGELDQLRR 258 (916)
T ss_pred ----HHHHHHHHHH
Confidence 4666666543
No 182
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.03 E-value=1.5e+02 Score=27.02 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEK 174 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~ 174 (298)
.+++.+ ..+.+.|+..+.|.
T Consensus 32 ~e~~~l-~~~l~~le~e~~el 51 (185)
T PRK14139 32 DAAPAL-EAELAEAEAKAAEL 51 (185)
T ss_pred hhHHHH-HHHHHHHHHHHHHH
Confidence 345442 33445555555443
No 183
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=23.90 E-value=3.8e+02 Score=21.41 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 177 ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 177 Rh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
......+......+-.++.+.+.+++.+......|++++.
T Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 119 (120)
T PF11740_consen 80 EEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAELA 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555556666677777777777777776653
No 184
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=23.73 E-value=3.6e+02 Score=21.08 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAWQ----QRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaWq----~~A~snEA~an~Lra~LqQvla 248 (298)
..++.++.+..++-.+|+.|..++..=. ...+..-+....|...+..++.
T Consensus 50 ~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~ 103 (117)
T smart00503 50 RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566666677788888776654211 2345666777888888877764
No 185
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.57 E-value=6e+02 Score=23.92 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
+||-.+-.+-+=-.-+=++++...-++...+.|.--.-.++++.-.|-+ .--+|+...+.-..-|++||.+|+.
T Consensus 127 ~Gdv~A~~~~~~l~~~~~~l~~~~~~~q~~~Ae~iTEE~r~~v~~~ela------~f~~evd~lr~~~~rL~~RL~rLe~ 200 (204)
T COG3165 127 FGDVAAQSVVRALRSGSRFLKHGLKQLQRNLAEAITEEWRMAVGPLELA------DFAEEVDALRDAVERLEARLERLER 200 (204)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4543333333333445555666655566556555444444544444433 4457888888889999999998876
Q ss_pred HH
Q 043286 221 EA 222 (298)
Q Consensus 221 E~ 222 (298)
+.
T Consensus 201 k~ 202 (204)
T COG3165 201 KA 202 (204)
T ss_pred hh
Confidence 53
No 186
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.55 E-value=1.2e+03 Score=26.91 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=11.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 043286 223 GAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 223 QaWq~~A~snEA~an~Lra~LqQ 245 (298)
..|+.+...-++-...+...+++
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~~ 743 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIAA 743 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444444443
No 187
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=3.1e+02 Score=26.05 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 043286 178 NQLQTISLVEDK 189 (298)
Q Consensus 178 h~r~ll~avE~~ 189 (298)
++...|+.+|..
T Consensus 35 ~~~~tVSLve~q 46 (218)
T COG3159 35 PVAGTVSLVERQ 46 (218)
T ss_pred CCCCeeehHHHH
Confidence 455677777775
No 188
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.36 E-value=1.1e+03 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 043286 153 DAEIDRFLKVQGDRLRQAIQEKVQANQLQTI 183 (298)
Q Consensus 153 ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll 183 (298)
-..+|.=|+-=+.|||..=+|+-|+-+-+++
T Consensus 47 ~~hld~aLkec~~qlr~~ree~eq~i~~~~~ 77 (769)
T PF05911_consen 47 VSHLDGALKECMRQLRQVREEQEQKIHEAVA 77 (769)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456777777777777776666554444433
No 189
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.33 E-value=85 Score=32.36 Aligned_cols=32 Identities=38% Similarity=0.496 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 183 ISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 183 l~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
|.|||++ .|||+||.|.-+...--.||.+++.
T Consensus 373 LeAIErA--EklR~kEle~r~~d~Fq~ELg~FVe 404 (426)
T smart00806 373 LEAIERA--EKLREKELEYRRVDEFEKELGNFVE 404 (426)
T ss_pred HHHHHHH--HHHHHHHHHhccccHHHHHHHHHhc
Confidence 4566664 7899998887777776667766553
No 190
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=23.31 E-value=4.8e+02 Score=28.12 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=14.1
Q ss_pred CCCCcccccccCCCCcc---ccCCCCCC
Q 043286 54 YIPPFHVVGFAPGPVNA---TDGSDGGA 78 (298)
Q Consensus 54 ~~p~~~~~g~~~~~~~~---~~~~d~~~ 78 (298)
..|-+.-+|-+|.+.+- -++.+|+-
T Consensus 36 ~~~~l~~~gk~~~~~t~~~v~d~~~~~~ 63 (591)
T KOG2412|consen 36 VEKKLNGFGKYPQPITNTTVRDGRRGGG 63 (591)
T ss_pred hhhhhcccCCCccHHHHHHHHhhhccCC
Confidence 34556667777766653 34555443
No 191
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=23.17 E-value=5.7e+02 Score=23.16 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------H-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 043286 176 QANQLQTISLVEDKVIEKLREKEAEVENIN------------K-----RNLELEERMEQLSVEAGAWQQRARHNENMINA 238 (298)
Q Consensus 176 qRh~r~ll~avE~~~~~rLReKE~EIera~------------r-----rn~ELEErlrql~aE~QaWq~~A~snEA~an~ 238 (298)
++.+..||..+..+|. ..|.+=.||+.-. + ...+|++.+.+|..|-+---.++.-| +-
T Consensus 11 Qq~qa~Lv~~LQ~KV~-qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN----~l 85 (182)
T PF15035_consen 11 QQRQAQLVQRLQAKVL-QYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVN----AL 85 (182)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHH----HH
Confidence 4555566666666543 2333434443322 1 23567777777777766444444333 45
Q ss_pred HHHHHHHHH
Q 043286 239 LKVNLQHVY 247 (298)
Q Consensus 239 Lra~LqQvl 247 (298)
||..|+|+.
T Consensus 86 LReQLEq~~ 94 (182)
T PF15035_consen 86 LREQLEQAR 94 (182)
T ss_pred HHHHHHHHH
Confidence 666666653
No 192
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.08 E-value=1.2e+03 Score=26.90 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 192 EKLREK----EAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 192 ~rLReK----E~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
++|++| ++|+.++.-.-+|++|.+.-+-.-.-..-..-+.+||+-|-|...|+.+
T Consensus 368 r~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekl 426 (1265)
T KOG0976|consen 368 RSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKL 426 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 444444 3444444444555555554444333333445567888877777766654
No 193
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.97 E-value=3.1e+02 Score=20.06 Aligned_cols=29 Identities=38% Similarity=0.544 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
+.+.+.+++.+...|..|...+..|..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444443
No 194
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.91 E-value=2e+02 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043286 203 NINKRNLELEERMEQLSVEAGAWQQRARHN 232 (298)
Q Consensus 203 ra~rrn~ELEErlrql~aE~QaWq~~A~sn 232 (298)
.....+.+|+..+++|.+|+......+..-
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678888888889988666655443
No 195
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.74 E-value=4.8e+02 Score=22.22 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=50.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 140 FIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 140 ~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
.+-.-|.+.|.+-..|+..+ +.+..+|-. .|..-...|+..++. .+++.....+..+|+..++.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l-~~el~~l~~----~r~~l~~Eiv~l~~~---------~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASL-QEELARLEA----ERDELREEIVKLMEE---------NEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888643 444444432 223223345554433 3333333344444444444444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 220 VEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 220 aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
..-+.--.+--+...-+.-|++.++.+.
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444555556666777888777764
No 196
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.72 E-value=1.1e+03 Score=26.18 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043286 141 IGDDIDSELQRQDAEIDRFLKVQ------GDRLRQAIQEKVQANQL-QTISLVEDKVIEKLREKEAEVENINKRNLELEE 213 (298)
Q Consensus 141 l~d~L~sqLqqQ~~EID~~lr~Q------~ErLR~~L~E~rqRh~r-~ll~avE~~~~~rLReKE~EIera~rrn~ELEE 213 (298)
+.+.+..--.......+.+.+++ .........|...+.+. .....--.-+.+.+...-.++++...+.-++++
T Consensus 508 l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 508 LEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCCccccCCCCccchhhcccccccccccccc
Q 043286 214 RMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSRDSKEGCGDSEVDDTASCCNGRAIDFHILCKENNDMKELMTCK 293 (298)
Q Consensus 214 rlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~~~~~eg~gdse~DDA~ScC~~~~~d~~~~~~~~~~~k~~~~Ck 293 (298)
.+.-+..|-..-..+.+.=|+--.-|+-+|... +..+. +..+|..+ ..+....|+..+|+
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~-----------k~~~~--------~~s~d~~L-~EElk~yK~~LkCs 647 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERL-----------KKEES--------GASADEVL-AEELKEYKELLKCS 647 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccccc--------cccccHHH-HHHHHHHHhceeCC
Q ss_pred ccc
Q 043286 294 MYI 296 (298)
Q Consensus 294 ~C~ 296 (298)
+|+
T Consensus 648 ~Cn 650 (698)
T KOG0978|consen 648 VCN 650 (698)
T ss_pred Ccc
No 197
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.53 E-value=3.7e+02 Score=20.82 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 188 DKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 188 ~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
..++++||.+..|.+.... +|-.++..+..+...-..++..
T Consensus 32 ~~~IKKLr~~~~e~e~~~~---~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIK---ELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 3566788888877775443 5556666666666555555443
No 198
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=22.52 E-value=4.6e+02 Score=30.03 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 150 QRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 150 qqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
.+++.|-.+.=+++-||+.+.-.|+ ..+|+.-+.|-|....|-|++.++-.|-.|+.|+
T Consensus 467 ~~er~Erer~er~erer~Erer~er---------Er~erer~erer~~r~e~er~~r~e~e~~e~~rr 525 (1021)
T PTZ00266 467 ERERLERERMERIERERLERERLER---------ERLERDRLERDRLDRLERERVDRLERDRLEKARR 525 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 199
>PRK11415 hypothetical protein; Provisional
Probab=22.42 E-value=1.7e+02 Score=22.72 Aligned_cols=32 Identities=9% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 190 ~~~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
.+..|+..+..+.++..+..+|+.+|.+++..
T Consensus 8 ~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~ 39 (74)
T PRK11415 8 LISRLKNENPRFMSLFDKHNKLDHEIARKEGS 39 (74)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677888888888888888888888777664
No 200
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=22.31 E-value=1.7e+02 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlr 216 (298)
=|.|+.++...+.++..+|+.+|+
T Consensus 58 DlsEak~~~~~~e~rI~~L~~~L~ 81 (160)
T PRK06342 58 DVNERRRQMARPLRDLRYLAARRR 81 (160)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHc
Confidence 344545555555555556665554
No 201
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=5.2e+02 Score=26.48 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARH------NENMINALKVNLQHVYA 248 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~s------nEA~an~Lra~LqQvla 248 (298)
.++.|-|++||.+.+-+-|.|- .++|..+|.+ .|....+++.+.+..++
T Consensus 82 eki~eld~~iedaeenlGE~ev--------~ea~~~kaeYycqigDkena~~~~~~t~~ktvs 136 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEV--------REAMLRKAEYYCQIGDKENALEALRKTYEKTVS 136 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 4555666666666555555542 4788888875 56777788888877654
No 202
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.26 E-value=7.8e+02 Score=24.47 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHH
Q 043286 179 QLQTISLVEDKVIEKLREKEAEVENINKRN---------LELEERMEQLSVE-AGAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 179 ~r~ll~avE~~~~~rLReKE~EIera~rrn---------~ELEErlrql~aE-~QaWq~~A~snEA~an~Lra~LqQ 245 (298)
...+...+..++..+|..+...++.+..+. ....+++.++..- .++|+..-+....-...|...|+.
T Consensus 314 L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~ 390 (438)
T PRK00286 314 LDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEA 390 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555667777777888877777654433 1122222222211 245666666666655555555543
No 203
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.25 E-value=4.4e+02 Score=21.58 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=3.9
Q ss_pred HhHHHHHHH
Q 043286 196 EKEAEVENI 204 (298)
Q Consensus 196 eKE~EIera 204 (298)
.|.++++.+
T Consensus 32 a~~~~~~~l 40 (106)
T PF10805_consen 32 AKREDIEKL 40 (106)
T ss_pred ccHHHHHHH
Confidence 344444444
No 204
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.19 E-value=2.6e+02 Score=21.10 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQR 228 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~ 228 (298)
..|....+++++.++..+|++.-.+|..|...|.+-
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 467788888888888888888888888887777653
No 205
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.93 E-value=8.2e+02 Score=24.71 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 043286 233 ENMINALKVNLQHVYAQSR 251 (298)
Q Consensus 233 EA~an~Lra~LqQvlaq~~ 251 (298)
|+....|..+|.+.+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 86 EAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4445566777777766543
No 206
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.85 E-value=4.4e+02 Score=21.39 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~aE~QaWq~~A~ 230 (298)
|++.++--..+|+..-.+|..|-++|+.+-+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555567899999999999999987643
No 207
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.70 E-value=9.6e+02 Score=25.31 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLKVQGD------RLRQAIQEKVQANQLQTISLVEDKVIEKLR---EKEAEVENINKRNLELEE 213 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~Q~E------rLR~~L~E~rqRh~r~ll~avE~~~~~rLR---eKE~EIera~rrn~ELEE 213 (298)
.++..+++.-..+|+.+.....+ .+...+.+. +.+...+-..+...-..++. +.+.+++.+.....+.+.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a-~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEA-QRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 214 RMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 214 rlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
.++++.... .|-.++. .++..++..|+..
T Consensus 284 ~l~~l~~~~-~p~~l~~---~ll~~~~~q~~~e 312 (650)
T TIGR03185 284 QLRELAADP-LPLLLIP---NLLDSTKAQLQKE 312 (650)
T ss_pred HHHHHhccc-CCHhhhH---HHHHHHHHHHHHH
No 208
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.67 E-value=4.2e+02 Score=21.10 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 043286 198 EAEVENINK 206 (298)
Q Consensus 198 E~EIera~r 206 (298)
|+||.++++
T Consensus 63 EeEI~rLr~ 71 (79)
T PF08581_consen 63 EEEIARLRR 71 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 209
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.44 E-value=8.2e+02 Score=24.39 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
.|..+++++++...+||.-|. ...|++||.|-..++++.+
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE-------------~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLE-------------QEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 455666677776666665554 3558888888888887754
No 210
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.39 E-value=4.2e+02 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.8
Q ss_pred chhhhhhhHHHH
Q 043286 137 LLSFIGDDIDSE 148 (298)
Q Consensus 137 ~~s~l~d~L~sq 148 (298)
++-.+|.++..+
T Consensus 61 vlV~lG~~~~vE 72 (120)
T PF02996_consen 61 VLVSLGAGYYVE 72 (120)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEeeCCeEEE
Confidence 334556555433
No 211
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.14 E-value=6.2e+02 Score=22.90 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043286 149 LQRQDAEI 156 (298)
Q Consensus 149 LqqQ~~EI 156 (298)
|...+.+|
T Consensus 22 L~~~~~~l 29 (302)
T PF10186_consen 22 LLELRSEL 29 (302)
T ss_pred HHHHHHHH
Confidence 33333333
No 212
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.09 E-value=3.8e+02 Score=27.99 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 210 ELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 210 ELEErlrql~aE~QaWq~~A~ 230 (298)
|||--||=-.||+.+||.+|-
T Consensus 354 eLESIVRiKqAEA~MFQ~kAd 374 (446)
T PF07227_consen 354 ELESIVRIKQAEAKMFQLKAD 374 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666665543
No 213
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=20.95 E-value=2.4e+02 Score=24.28 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043286 203 NINKRNLELEERMEQLS 219 (298)
Q Consensus 203 ra~rrn~ELEErlrql~ 219 (298)
.+..+-..++.|++.|.
T Consensus 46 aak~~~~~~e~ri~~L~ 62 (151)
T TIGR01462 46 AAKEEQGFNEGRIAELE 62 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444554444443
No 214
>PHA03248 DNA packaging tegument protein UL25; Provisional
Probab=20.92 E-value=2.9e+02 Score=29.72 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
-+-+|||--|..++++..-...||+..+
T Consensus 82 ~v~~rl~p~e~~~~~v~~~l~~le~aa~ 109 (583)
T PHA03248 82 EVDRRLRPIERQLEEVADALADLEEAAA 109 (583)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3457788888888888887777776654
No 215
>PRK10963 hypothetical protein; Provisional
Probab=20.83 E-value=3.8e+02 Score=24.56 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 043286 182 TISLVEDKVIEKLREKEA 199 (298)
Q Consensus 182 ll~avE~~~~~rLReKE~ 199 (298)
.|+.+|+.+ .+||+|-.
T Consensus 38 aVSL~ErQ~-~~LR~r~~ 54 (223)
T PRK10963 38 TVSLVEWQM-ARQRNHIH 54 (223)
T ss_pred eecHHHHHH-HHHHHHHH
Confidence 455566542 34444433
No 216
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=20.65 E-value=5.3e+02 Score=21.95 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 178 NQLQTISLVED----KVIEKLREKEAEVENINKRNLELEERMEQLSV 220 (298)
Q Consensus 178 h~r~ll~avE~----~~~~rLReKE~EIera~rrn~ELEErlrql~a 220 (298)
..|..+..++. +++..=+||+.-+..+...-..||.+|+++..
T Consensus 48 kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnlnt 94 (107)
T PRK15365 48 KSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNA 94 (107)
T ss_pred HHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555554 66667799999999999999999999998864
No 217
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.58 E-value=1.5e+02 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 201 VENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 201 Iera~rrn~ELEErlrql~aE~Qa 224 (298)
|..+.+.|..|.++|..+++|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887766554
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.56 E-value=6.3e+02 Score=22.76 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 195 REKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
|+-.+|-..+-.+..+|++.+++|..|-... ...+-..+..|+..+..+.
T Consensus 99 r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~---~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 99 REESEEREELLEELEELKKELKELKKELEKY---SENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHH
Confidence 3444455555555666666666666665522 2233344444444444433
No 219
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.47 E-value=4.6e+02 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=15.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
..+|.+|..+++.+.+ +|+.+++++..+
T Consensus 108 ~~~i~~~~~~~~~l~~---~L~~k~~~~~~~ 135 (144)
T PRK14011 108 NKKIEELNKEITKLRK---ELEKRAQAIEQR 135 (144)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455566666665554 466666665433
No 220
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=20.45 E-value=5.6e+02 Score=22.07 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 156 IDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 156 ID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
||.-|..|.+-|-..+.+. |++.++ +-+++ +.--..+.+|.-||++|+..|+
T Consensus 2 ~~a~~~~q~~~l~~~v~~l-Red~r~---SEdrs--------a~SRa~mhrRlDElV~Rv~~lE 53 (112)
T PF07439_consen 2 IDAGLHQQLGTLNAEVKEL-REDIRR---SEDRS--------AASRASMHRRLDELVERVTTLE 53 (112)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHH---HHHHh--------hhhhHHHHHhHHHHHHHHHHHH
Confidence 3444555555555555554 334331 11111 1122568889999999999883
No 221
>PRK04406 hypothetical protein; Provisional
Probab=20.35 E-value=4.3e+02 Score=20.70 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 043286 204 INKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQS 250 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~ 250 (298)
+..|..+||.++.-...-...--.+--...-.+..|+..|..+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444333333333333444456666666665443
No 222
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.21 E-value=3.8e+02 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKR 207 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rr 207 (298)
+..+||++|..|+-...+.
T Consensus 98 ~~lkkLq~~qmem~~~Q~e 116 (201)
T COG1422 98 KKLKKLQEKQMEMMDDQRE 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777777776655543
No 223
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.20 E-value=6e+02 Score=24.00 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
.....|++|+-+++++.++..+|......+..|-
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 3445677888888888888888877777666554
Done!