Query 043286
Match_columns 298
No_of_seqs 127 out of 158
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqq_A Transcription factor HY 94.1 0.15 5.2E-06 35.4 6.2 35 196-230 7-41 (42)
2 2v71_A Nuclear distribution pr 93.9 1.4 4.9E-05 39.0 13.8 73 161-245 23-99 (189)
3 1ci6_A Transcription factor AT 88.9 1.9 6.4E-05 31.5 7.5 37 193-229 24-60 (63)
4 3oja_B Anopheles plasmodium-re 87.0 16 0.00055 35.2 14.9 66 181-246 505-570 (597)
5 4etp_A Kinesin-like protein KA 86.7 1.8 6.2E-05 41.6 8.0 57 192-248 3-59 (403)
6 3oja_B Anopheles plasmodium-re 84.6 30 0.001 33.3 16.3 12 237-248 568-579 (597)
7 3mq9_A Bone marrow stromal ant 84.1 9.3 0.00032 36.1 11.5 24 153-176 395-418 (471)
8 2v66_B Nuclear distribution pr 81.0 21 0.00073 29.1 13.8 85 160-249 8-92 (111)
9 1uii_A Geminin; human, DNA rep 80.4 11 0.00039 29.4 8.7 53 163-218 25-79 (83)
10 1jnm_A Proto-oncogene C-JUN; B 79.3 9.5 0.00032 27.4 7.5 34 192-225 22-55 (62)
11 2zxx_A Geminin; coiled-coil, c 78.6 9.1 0.00031 29.7 7.6 52 164-218 14-67 (79)
12 3oja_A Leucine-rich immune mol 76.6 46 0.0016 31.4 13.5 57 193-249 422-478 (487)
13 1t6f_A Geminin; coiled-coil, c 74.9 3.8 0.00013 27.6 3.9 22 192-213 14-35 (37)
14 2v66_B Nuclear distribution pr 74.9 9.4 0.00032 31.2 7.1 44 205-248 2-45 (111)
15 3iv1_A Tumor susceptibility ge 74.1 28 0.00096 26.8 10.2 59 181-246 3-72 (78)
16 1a93_B MAX protein, coiled coi 73.9 5.5 0.00019 26.5 4.4 27 193-219 8-34 (34)
17 2l5g_B Putative uncharacterize 73.8 8.5 0.00029 26.7 5.5 32 191-222 8-39 (42)
18 2wt7_A Proto-oncogene protein 72.0 25 0.00085 25.3 9.9 39 193-231 24-62 (63)
19 3hnw_A Uncharacterized protein 71.6 33 0.0011 28.5 9.9 31 192-222 103-133 (138)
20 2b5u_A Colicin E3; high resolu 70.3 30 0.001 35.1 10.7 40 177-216 306-345 (551)
21 1t2k_D Cyclic-AMP-dependent tr 69.5 27 0.00093 24.8 9.7 36 193-228 23-58 (61)
22 1wle_A Seryl-tRNA synthetase; 69.0 70 0.0024 31.7 13.2 91 144-251 52-154 (501)
23 1dip_A Delta-sleep-inducing pe 68.9 3.4 0.00012 32.0 2.9 31 199-229 15-45 (78)
24 2jee_A YIIU; FTSZ, septum, coi 68.6 33 0.0011 26.6 8.5 26 204-229 46-71 (81)
25 3mq7_A Bone marrow stromal ant 68.6 28 0.00096 28.9 8.6 81 142-225 14-104 (121)
26 3na7_A HP0958; flagellar bioge 68.4 64 0.0022 28.6 12.0 11 287-297 220-230 (256)
27 1hjb_A Ccaat/enhancer binding 68.1 41 0.0014 26.2 9.1 35 196-230 40-74 (87)
28 2wvr_A Geminin; DNA replicatio 67.8 27 0.00093 31.4 9.0 51 162-215 93-145 (209)
29 3mq7_A Bone marrow stromal ant 67.4 53 0.0018 27.3 13.9 52 164-216 55-109 (121)
30 1ez3_A Syntaxin-1A; three heli 66.8 28 0.00096 27.1 8.1 81 164-248 21-109 (127)
31 3s9g_A Protein hexim1; cyclin 61.7 63 0.0021 26.2 9.5 30 191-227 64-93 (104)
32 1gu4_A CAAT/enhancer binding p 59.8 52 0.0018 25.1 8.1 33 196-228 40-72 (78)
33 2akf_A Coronin-1A; coiled coil 59.2 18 0.00063 23.4 4.6 28 197-224 4-31 (32)
34 1kd8_A GABH AIV, GCN4 acid bas 58.8 12 0.00042 25.1 3.8 29 193-221 2-30 (36)
35 1wlq_A Geminin; coiled-coil; 2 58.4 58 0.002 25.4 8.2 51 164-217 18-70 (83)
36 1kd8_B GABH BLL, GCN4 acid bas 57.0 12 0.00041 25.1 3.5 27 193-219 2-28 (36)
37 1t3j_A Mitofusin 1; coiled coi 55.8 28 0.00097 27.8 6.2 33 193-229 48-80 (96)
38 1joc_A EEA1, early endosomal a 54.3 84 0.0029 25.3 10.9 27 191-217 10-36 (125)
39 3vem_A Helicase protein MOM1; 53.2 95 0.0032 25.6 10.7 29 138-166 30-58 (115)
40 3nmd_A CGMP dependent protein 53.1 37 0.0013 25.8 6.2 30 194-223 35-64 (72)
41 3e98_A GAF domain of unknown f 52.0 38 0.0013 30.4 7.2 33 202-241 75-107 (252)
42 2dgc_A Protein (GCN4); basic d 51.9 53 0.0018 23.8 6.7 24 194-217 32-55 (63)
43 1gd2_E Transcription factor PA 51.2 62 0.0021 24.2 7.2 18 205-222 49-66 (70)
44 3na7_A HP0958; flagellar bioge 50.1 1.3E+02 0.0046 26.4 13.5 50 194-243 92-141 (256)
45 2dfs_A Myosin-5A; myosin-V, in 49.8 2.3E+02 0.0079 30.6 13.9 21 199-219 998-1018(1080)
46 1s94_A S-syntaxin; three helix 49.1 84 0.0029 26.1 8.6 51 198-248 84-140 (180)
47 3tnu_A Keratin, type I cytoske 48.7 1E+02 0.0036 24.8 9.8 26 193-218 46-71 (131)
48 2q6q_A Spindle POLE BODY compo 47.9 90 0.0031 23.8 8.1 27 191-217 9-35 (74)
49 1fmh_A General control protein 47.6 38 0.0013 21.9 4.7 27 196-222 5-31 (33)
50 3v6i_B V-type ATP synthase, su 47.0 1E+02 0.0035 25.0 8.2 56 162-221 2-57 (105)
51 3m91_A Proteasome-associated A 46.8 37 0.0013 24.1 5.0 31 191-221 8-38 (51)
52 2i1j_A Moesin; FERM, coiled-co 46.0 18 0.00061 36.3 4.5 13 162-174 300-312 (575)
53 3u06_A Protein claret segregat 45.6 74 0.0025 30.6 8.6 52 196-247 7-58 (412)
54 3ghg_C Fibrinogen gamma chain; 44.2 1.7E+02 0.0057 28.6 10.9 103 144-248 24-133 (411)
55 3nmd_A CGMP dependent protein 43.5 53 0.0018 25.0 5.7 22 194-215 28-49 (72)
56 3vkg_A Dynein heavy chain, cyt 43.1 4.2E+02 0.014 32.5 15.7 39 130-173 1890-1928(3245)
57 1jnm_A Proto-oncogene C-JUN; B 39.7 45 0.0015 23.7 4.7 35 207-241 23-57 (62)
58 3ghg_A Fibrinogen alpha chain; 38.8 1.1E+02 0.0038 31.1 8.8 20 151-170 78-97 (562)
59 3i00_A HIP-I, huntingtin-inter 37.9 1.6E+02 0.0056 23.9 9.7 14 194-207 49-62 (120)
60 1hjb_A Ccaat/enhancer binding 37.7 94 0.0032 24.1 6.5 42 204-245 34-75 (87)
61 3c3g_A Alpha/beta peptide with 37.6 38 0.0013 22.3 3.5 26 193-218 1-26 (33)
62 2wq1_A General control protein 37.2 43 0.0015 22.1 3.7 26 193-218 1-26 (33)
63 1uo4_A General control protein 37.1 36 0.0012 22.6 3.4 26 193-218 2-27 (34)
64 2p4v_A Transcription elongatio 36.4 66 0.0022 26.9 5.9 20 199-218 46-65 (158)
65 2v71_A Nuclear distribution pr 36.3 2.2E+02 0.0076 25.0 16.6 58 193-250 89-146 (189)
66 3cvf_A Homer-3, homer protein 35.9 1.5E+02 0.005 22.8 7.3 27 200-226 14-40 (79)
67 3m48_A General control protein 35.1 44 0.0015 22.0 3.5 26 193-218 1-26 (33)
68 2oxj_A Hybrid alpha/beta pepti 34.9 53 0.0018 21.8 3.9 27 193-219 2-28 (34)
69 2hy6_A General control protein 34.3 46 0.0016 22.0 3.5 27 193-219 2-28 (34)
70 3vkg_A Dynein heavy chain, cyt 34.2 5.7E+02 0.019 31.3 15.0 13 148-160 1949-1961(3245)
71 2q2f_A Selenoprotein S; anti-p 33.8 1.7E+02 0.0059 23.0 8.7 35 176-210 53-87 (89)
72 3s9g_A Protein hexim1; cyclin 32.3 2E+02 0.0068 23.2 8.7 22 205-226 64-85 (104)
73 3mtu_A Tropomyosin alpha-1 cha 32.2 1.5E+02 0.0052 22.0 6.7 55 188-249 5-66 (75)
74 3c3f_A Alpha/beta peptide with 31.4 55 0.0019 21.7 3.5 26 193-218 2-27 (34)
75 2yy0_A C-MYC-binding protein; 31.2 93 0.0032 21.9 5.1 26 199-224 19-44 (53)
76 1ci6_A Transcription factor AT 30.9 1.5E+02 0.005 21.3 6.7 38 207-244 24-61 (63)
77 2bni_A General control protein 30.5 54 0.0018 21.7 3.4 26 193-218 2-27 (34)
78 2ve7_A Kinetochore protein HEC 30.0 60 0.0021 30.0 5.0 34 190-223 176-209 (315)
79 2r2v_A GCN4 leucine zipper; co 29.9 66 0.0022 21.3 3.7 27 193-219 2-28 (34)
80 2nsa_A Trigger factor, TF; cha 29.8 2.2E+02 0.0075 22.9 8.5 62 143-204 55-117 (170)
81 3s4r_A Vimentin; alpha-helix, 29.7 1.9E+02 0.0066 22.2 12.7 81 138-227 11-91 (93)
82 1x79_B RAB GTPase binding effe 29.4 1.8E+02 0.0061 23.7 7.1 50 195-244 16-69 (112)
83 3cve_A Homer protein homolog 1 29.1 1.9E+02 0.0063 21.9 8.1 28 199-226 7-34 (72)
84 1deq_A Fibrinogen (alpha chain 28.8 2.6E+02 0.009 27.2 9.3 92 149-247 54-147 (390)
85 3qne_A Seryl-tRNA synthetase, 28.6 3.1E+02 0.011 27.1 10.1 77 156-250 32-108 (485)
86 2f23_A Anti-cleavage anti-GREA 28.4 64 0.0022 26.7 4.4 20 199-218 46-65 (156)
87 1m1j_C Fibrinogen gamma chain; 28.1 2.9E+02 0.0099 26.8 9.6 25 224-248 109-133 (409)
88 1zxa_A CGMP-dependent protein 27.6 84 0.0029 23.5 4.5 15 190-204 16-30 (67)
89 2qyw_A Vesicle transport throu 27.3 2.2E+02 0.0074 22.1 7.2 30 196-225 46-75 (102)
90 1gu4_A CAAT/enhancer binding p 27.2 1.1E+02 0.0039 23.1 5.3 38 204-241 34-71 (78)
91 3i00_A HIP-I, huntingtin-inter 27.0 2.4E+02 0.0082 22.9 7.6 39 208-246 42-80 (120)
92 1nkp_B MAX protein, MYC proto- 26.7 1.3E+02 0.0046 22.1 5.6 23 196-218 58-80 (83)
93 1grj_A GREA protein; transcrip 26.1 97 0.0033 25.7 5.2 20 199-218 46-65 (158)
94 4ani_A Protein GRPE; chaperone 25.9 2.9E+02 0.0098 24.5 8.5 23 199-221 87-109 (213)
95 3ghg_A Fibrinogen alpha chain; 25.5 5.5E+02 0.019 26.2 12.5 78 142-224 48-128 (562)
96 2dfs_A Myosin-5A; myosin-V, in 25.4 6.6E+02 0.023 27.1 16.3 36 191-226 1001-1036(1080)
97 3e1r_A Centrosomal protein of 25.1 2E+02 0.007 21.0 6.3 38 209-246 9-46 (58)
98 2dgc_A Protein (GCN4); basic d 25.1 1.4E+02 0.0049 21.4 5.3 21 206-226 30-50 (63)
99 1f5n_A Interferon-induced guan 24.8 5.1E+02 0.017 26.0 11.1 73 176-249 510-582 (592)
100 1wlq_A Geminin; coiled-coil; 2 24.5 2.5E+02 0.0085 21.8 7.3 38 199-236 38-75 (83)
101 3onj_A T-snare VTI1; helix, HA 24.4 2.4E+02 0.0082 21.6 8.2 30 196-225 31-60 (97)
102 1i84_S Smooth muscle myosin he 24.3 4.1E+02 0.014 28.6 10.8 29 194-222 908-936 (1184)
103 2wuj_A Septum site-determining 24.2 77 0.0026 22.4 3.6 19 200-218 35-53 (57)
104 4egx_A Kinesin-like protein KI 23.8 2.5E+02 0.0086 23.9 7.5 26 189-217 9-34 (184)
105 3vp9_A General transcriptional 23.2 2.7E+02 0.0094 21.9 8.0 52 154-218 39-91 (92)
106 1fad_A Protein (FADD protein); 23.1 2.3E+02 0.0079 21.1 6.4 54 189-246 30-84 (99)
107 3kin_B Kinesin heavy chain; mo 23.0 1.1E+02 0.0039 24.4 4.8 23 204-226 94-116 (117)
108 3q8t_A Beclin-1; autophagy, AT 23.0 2.6E+02 0.009 21.6 7.8 47 183-229 16-63 (96)
109 2qag_B Septin-6, protein NEDD5 22.9 18 0.00061 35.2 0.0 25 206-230 377-401 (427)
110 1nkp_A C-MYC, MYC proto-oncoge 22.5 2.2E+02 0.0076 21.5 6.2 21 198-218 65-85 (88)
111 1a92_A Delta antigen; leucine 22.2 98 0.0033 22.0 3.7 23 191-213 13-35 (50)
112 2wvr_A Geminin; DNA replicatio 22.2 3.7E+02 0.013 24.1 8.3 49 193-241 109-157 (209)
113 1vcs_A Vesicle transport throu 21.8 2.8E+02 0.0095 21.4 7.2 49 199-247 38-94 (102)
114 1pzr_A Erythronolide synthase; 21.6 1.5E+02 0.0051 21.5 4.7 22 192-213 35-56 (60)
115 2f42_A STIP1 homology and U-bo 21.4 88 0.003 26.9 4.1 47 154-203 13-59 (179)
116 3sde_A Paraspeckle component 1 20.8 1.2E+02 0.0042 25.9 4.9 34 149-182 227-260 (261)
117 3lay_A Zinc resistance-associa 20.7 2.3E+02 0.008 24.3 6.7 11 151-161 71-81 (175)
118 2o71_A Death domain-containing 20.6 65 0.0022 25.7 2.9 52 190-245 41-93 (115)
No 1
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.10 E-value=0.15 Score=35.42 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~ 230 (298)
+.|.....+..+|.|||+|+..|..|++.-+.+-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34445555667999999999999999999887643
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.93 E-value=1.4 Score=39.00 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=52.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----H
Q 043286 161 KVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENM----I 236 (298)
Q Consensus 161 r~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~----a 236 (298)
+.+.+.|+..|.|- +-.++. +|. |-|.||+.+.+++.+|..++.+|..|...|+.+....-.- +
T Consensus 23 ~q~~~~le~El~EF-qesSrE----LE~-------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVEF-QEGSRE----LEA-------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777664 333332 232 7788999999999999999999999999999988777555 4
Q ss_pred HHHHHHHHH
Q 043286 237 NALKVNLQH 245 (298)
Q Consensus 237 n~Lra~LqQ 245 (298)
+.|...|.+
T Consensus 91 ~~Lq~el~~ 99 (189)
T 2v71_A 91 SVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 3
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.90 E-value=1.9 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
+..+-+.+++.+...|.+|+.++..|..|.+.|..+-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999999988763
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.04 E-value=16 Score=35.20 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 181 QTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 181 ~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
..+..+...+..+...++.++.+..+...++++.++++..|...|...-+.......-|+..++..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 334444555555666666666666666667777777777777777777766666666555444433
No 5
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.65 E-value=1.8 Score=41.65 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=51.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
.++.++++||+.+.++..+|++.++++..|...+...-...|..---|+++|+.+.-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999999999999998754
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.56 E-value=30 Score=33.32 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 043286 237 NALKVNLQHVYA 248 (298)
Q Consensus 237 n~Lra~LqQvla 248 (298)
+.++.+|.+...
T Consensus 568 ~~~~~~~~~l~~ 579 (597)
T 3oja_B 568 SLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334566666554
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.10 E-value=9.3 Score=36.07 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 153 DAEIDRFLKVQGDRLRQAIQEKVQ 176 (298)
Q Consensus 153 ~~EID~~lr~Q~ErLR~~L~E~rq 176 (298)
...+.++|+.+.+++++.+.+.+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHH
Confidence 345667777777777777766543
No 8
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.96 E-value=21 Score=29.08 Aligned_cols=85 Identities=11% Similarity=0.171 Sum_probs=63.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 043286 160 LKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINAL 239 (298)
Q Consensus 160 lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~L 239 (298)
|+..+++|+..+.+-+.+...+ ..-...-.-.-..||...+..+..|..+||.|++.+...-+-+|..-+.+.-+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4566667776666543332221 11111223345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 043286 240 KVNLQHVYAQ 249 (298)
Q Consensus 240 ra~LqQvlaq 249 (298)
-++|.+++..
T Consensus 83 E~k~n~aiEr 92 (111)
T 2v66_B 83 EQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 9
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=80.45 E-value=11 Score=29.41 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 163 QGDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 163 Q~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
-.++-|..|+|+|| .+|-.++++ ..-.++-.|++||......|.+|.+.+.++
T Consensus 25 Pse~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 25 PSSQYWKEVAEKRR---KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888765 344455544 345667788899988888888877665543
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.28 E-value=9.5 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
.++.+.+.+++.+...|.+|...+..|..|....
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777776665443
No 11
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=78.56 E-value=9.1 Score=29.67 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 164 GDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 164 ~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
.++-|..|+|+|| .+|-.++++ ..-+.+-+|++||.++...|..|.|-+.++
T Consensus 14 se~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 14 SSQYWKEVAEQRR---KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp TCTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888765 345555554 344667788889988888888777655544
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.59 E-value=46 Score=31.42 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQ 249 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq 249 (298)
...+.+.|++++++...+..+++.++..|+..-.......+..+..-+++|+.+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 355667777778888888888999999999999999999998888888888877654
No 13
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.93 E-value=3.8 Score=27.64 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEE 213 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEE 213 (298)
+-+-+|++||++++.+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 4466899999999999999976
No 14
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.92 E-value=9.4 Score=31.19 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 205 NKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 205 ~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
-+++.+|..++.+|..|...|+.+.......+++.-+.||.-+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~ 45 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLS 45 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988776666666665544
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.13 E-value=28 Score=26.84 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 181 QTISLVEDKVIEKLREK----EAEVENINKRNLELE-------ERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 181 ~ll~avE~~~~~rLReK----E~EIera~rrn~ELE-------Erlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
+|++|||..+-+||||+ -+||+.+++-..||. +-|.+|..|-..|. ..+..|+.+.+.+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~-------~ni~~lk~K~~EL 72 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD-------KNIELLKKKDEEL 72 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 47888888888888875 578888888777764 45666666666653 3445566555443
No 16
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.94 E-value=5.5 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
+--+--.+|+.+.|+|+-|++.+|.|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 344556789999999999999999874
No 17
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=73.78 E-value=8.5 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
++++-.-+.||++...+..+|..+++.|+..+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555678999999999999999999998754
No 18
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.99 E-value=25 Score=25.30 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARH 231 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~s 231 (298)
++-+-+.+++.+...|.+|...|..|..|...|..+-..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888899999999999999998888776543
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.60 E-value=33 Score=28.51 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
-++.+...|++.+.+++.+|++++..|+.|.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889999999999999999998764
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=70.26 E-value=30 Score=35.06 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 177 ANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 177 Rh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
|++..++.-=++.+-+.+-+.-+||+.+.+-.+++.||+.
T Consensus 306 ~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 306 RQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334455566677766666666666544
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.49 E-value=27 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQR 228 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~ 228 (298)
+..+-+.+++.+...|.+|...+..|..|...|..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888899999999999999998887754
No 22
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=69.04 E-value=70 Score=31.70 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH
Q 043286 144 DIDSELQRQDAE-----IDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKE-------AEVENINKRNLEL 211 (298)
Q Consensus 144 ~L~sqLqqQ~~E-----ID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE-------~EIera~rrn~EL 211 (298)
.+...|.+.+.+ ||.++.+..+ .|..+.+ -...++--+++...+.+..+.++ ++++.+..+..+|
T Consensus 52 ~v~~~l~~R~~~~~~~~~~~~~~ld~~-~r~~~~~--~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 52 DAARALDLRKGELRSKDLPGIISTWQE-LRQLREQ--IRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Confidence 334455554432 7888776532 2222222 12222233444444444444442 4666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Q 043286 212 EERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQSR 251 (298)
Q Consensus 212 EErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~~ 251 (298)
-++++.+ |+....+...|+..+...+
T Consensus 129 ~~~i~~l--------------~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 129 RKQLTLL--------------YPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHH--------------HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHhCC
Confidence 6666655 3444556677777776543
No 23
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=68.88 E-value=3.4 Score=31.98 Aligned_cols=31 Identities=32% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
+|+|-++.+..||++++.+|+.|+...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677788889999999999999997766554
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.64 E-value=33 Score=26.62 Aligned_cols=26 Identities=27% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 204 INKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
++.....|+....+|..|-..|+.+-
T Consensus 46 ~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 46 AQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334458888889999999998764
No 25
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.63 E-value=28 Score=28.90 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQAN-------QLQTISLVEDKV---IEKLREKEAEVENINKRNLEL 211 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh-------~r~ll~avE~~~---~~rLReKE~EIera~rrn~EL 211 (298)
-|.|.++.+= ..+-++|+.|.-+-...|.+. ..+ +..|-.+++... .+++.+-+.||...+.+..+.
T Consensus 14 ~dGLrAq~EC--rN~T~lLq~qLTqAQe~l~~~-eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 14 RDGLRAVMEA--RNVTHLLQQELTEAQKGFQDV-EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556554333 478888888877766667664 222 223444454422 346788888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 043286 212 EERMEQLSVEAGAW 225 (298)
Q Consensus 212 EErlrql~aE~QaW 225 (298)
++.+.+|..+++.-
T Consensus 91 ~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 91 SAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhh
Confidence 88888888887743
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.44 E-value=64 Score=28.58 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=8.8
Q ss_pred ccccccccccC
Q 043286 287 KELMTCKMYIR 297 (298)
Q Consensus 287 k~~~~Ck~C~~ 297 (298)
+...+|+-||+
T Consensus 220 ~~Iv~Cp~CgR 230 (256)
T 3na7_A 220 GDMITCPYCGR 230 (256)
T ss_dssp SSCEECTTTCC
T ss_pred CCEEECCCCCe
Confidence 35679999996
No 27
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.06 E-value=41 Score=26.19 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~ 230 (298)
+.+.+++.+...|..|..+|.+|..|.+.++.+-.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888888888888877776665433
No 28
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=67.78 E-value=27 Score=31.42 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=28.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043286 162 VQGDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEERM 215 (298)
Q Consensus 162 ~Q~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEErl 215 (298)
.-.++-|..|+|+|| .+|-.++++ ..-.++-.|++||..+...|.+|.+.+
T Consensus 93 ~Pse~YWk~lAE~RR---~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 93 NPSSQYWKEVAEKRR---KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp SCCTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999876 234344433 233444455555555555555554433
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.38 E-value=53 Score=27.27 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 043286 164 GDRLRQAIQEKVQANQLQTISLVED---KVIEKLREKEAEVENINKRNLELEERME 216 (298)
Q Consensus 164 ~ErLR~~L~E~rqRh~r~ll~avE~---~~~~rLReKE~EIera~rrn~ELEErlr 216 (298)
.+-|+..|.+. +.+....+.-++. ..-.+|+.+.+|+|+.++.|.+|.-|+.
T Consensus 55 V~tL~~SL~~e-kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 55 VMALMASLDAE-KAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 56777777664 2232222333332 2245788888888888888888887775
No 30
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=66.76 E-value=28 Score=27.08 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHH
Q 043286 164 GDRLRQAIQEKVQANQLQTISLV--EDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGA------WQQRARHNENM 235 (298)
Q Consensus 164 ~ErLR~~L~E~rqRh~r~ll~av--E~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~Qa------Wq~~A~snEA~ 235 (298)
.++|+..+.+-...|.+. |.++ +..+-+ +-|.-+..+.++...+..+|+.|..++.. +-...+...+.
T Consensus 21 i~~i~~~v~~l~~~~~~~-L~~~~~~~~~~~---~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q 96 (127)
T 1ez3_A 21 IDKIAENVEEVKRKHSAI-LASPNPDEKTKE---ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ 96 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCSSCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Confidence 344555555554455544 3322 222222 33555666777777888888888776653 11233677889
Q ss_pred HHHHHHHHHHHHH
Q 043286 236 INALKVNLQHVYA 248 (298)
Q Consensus 236 an~Lra~LqQvla 248 (298)
+++|..+|..++.
T Consensus 97 ~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 97 HSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 31
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.71 E-value=63 Score=26.15 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQ 227 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~ 227 (298)
..|+|+.++||+++++.|..| ..|+..|..
T Consensus 64 ~~~v~eLe~everL~~ENq~L-------~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQL-------LTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHHHHhhcc
Confidence 578999999999999988754 468888875
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.75 E-value=52 Score=25.05 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQR 228 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~ 228 (298)
+.+.+++.+...|..|..+|.+|..|...++.+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788888888888888887776643
No 33
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=59.19 E-value=18 Score=23.41 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
.|+|+-+++.--++|++|+-+|+.-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888888888888888888766654
No 34
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.84 E-value=12 Score=25.09 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
|+.+.|+++|.+-.++++||..+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778889999999999999877776543
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.36 E-value=58 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 164 GDRLRQAIQEKVQANQLQTISLVED--KVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 164 ~ErLR~~L~E~rqRh~r~ll~avE~--~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
.++-|..|+|+||. +|-.++++ ..-+.+-.|++||..+...|.+|.+...+
T Consensus 18 se~YWk~lAE~Rr~---AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 18 SSQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp TCTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887653 44444443 34566777888888888888877765544
No 36
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.02 E-value=12 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
|+.+-|+.+|.+-.++++||..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567778888888888999987666553
No 37
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.81 E-value=28 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRA 229 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A 229 (298)
-.++.++||.++.++...|| .+.-++-.|+.+|
T Consensus 48 t~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA 80 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHH
Confidence 34466666666666666665 3334444454444
No 38
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.32 E-value=84 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
+.|.-.-|.|++.+..+..||..++..
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344445566788888888888776653
No 39
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=53.16 E-value=95 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhHH
Q 043286 138 LSFIGDDIDSELQRQDAEIDRFLKVQGDR 166 (298)
Q Consensus 138 ~s~l~d~L~sqLqqQ~~EID~~lr~Q~Er 166 (298)
+++.+|=|.-+|++=+.+.|.+++.|-++
T Consensus 30 ~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 30 FPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999665
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.15 E-value=37 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAG 223 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~Q 223 (298)
||+||+-|+...++..|+++.|+.|..|-.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655555544433
No 41
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=52.04 E-value=38 Score=30.42 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 202 ENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKV 241 (298)
Q Consensus 202 era~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra 241 (298)
++.+.||.+||++++.|- ..|+.||++.+.++.
T Consensus 75 ~~LR~r~~~Le~~L~~Li-------~~A~~Ne~l~~~~~~ 107 (252)
T 3e98_A 75 RLLRERNIEMRHRLSQLM-------DVARENDRLFDKTRR 107 (252)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 334445555566555543 355556655544443
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.86 E-value=53 Score=23.79 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrq 217 (298)
+.+.+.+++.+...|.+|...+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.21 E-value=62 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043286 205 NKRNLELEERMEQLSVEA 222 (298)
Q Consensus 205 ~rrn~ELEErlrql~aE~ 222 (298)
...|..|-+.+..|..|.
T Consensus 49 ~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.06 E-value=1.3e+02 Score=26.43 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNL 243 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~L 243 (298)
+.+...||+.+.++...||+.+..+..+...........++....++..|
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666665555555554444444444444443333
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.80 E-value=2.3e+02 Score=30.61 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~ 219 (298)
++++++.+...+||++..++.
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 46
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.10 E-value=84 Score=26.09 Aligned_cols=51 Identities=8% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQLSVEAG------AWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql~aE~Q------aWq~~A~snEA~an~Lra~LqQvla 248 (298)
+.-+..+.+....+..+|+.|..+.. ..-...+...+..++|..+|..++.
T Consensus 84 e~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~ 140 (180)
T 1s94_A 84 EELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777776542 1222235556778999999998875
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.67 E-value=1e+02 Score=24.76 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
.+...+.||+.+...+..||..|+.+
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455556666666666666555443
No 48
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.92 E-value=90 Score=23.77 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
..+|++|.+||++++...--|-.+|-.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999888766666555543
No 49
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=47.61 E-value=38 Score=21.87 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
+.|.|++.+...|-.||..+.||+.|.
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 456677888888888998888888774
No 50
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=47.00 E-value=1e+02 Score=24.99 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 162 VQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 162 ~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
+++..|-..|.| +.+-...=|...-..+.+++.+.|+|-.++-+ +-++++++|.+|
T Consensus 2 m~g~gllk~LAe-rE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~---eAe~~a~~l~ae 57 (105)
T 3v6i_B 2 MGGLGLIKSLAE-KEKQLLERLEAAKKEAEERVKRAEAEAKALLE---EAEAKAKALEAQ 57 (105)
T ss_dssp ---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.81 E-value=37 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE 221 (298)
..|+++...++..+..+|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888889999999998888866554
No 52
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.02 E-value=18 Score=36.27 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=7.8
Q ss_pred HhhHHHHHHHHHH
Q 043286 162 VQGDRLRQAIQEK 174 (298)
Q Consensus 162 ~Q~ErLR~~L~E~ 174 (298)
+..+||+..-.|.
T Consensus 300 ~e~qqm~~~a~e~ 312 (575)
T 2i1j_A 300 IDVQQMKAQAREE 312 (575)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567777655543
No 53
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.58 E-value=74 Score=30.63 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
+.++|++.+..+..+|++.++++.+|...-...-...|..---|+++|+.+.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666666666666666666666666655555555666667788887764
No 54
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.21 E-value=1.7e+02 Score=28.62 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HH------HHHHH
Q 043286 144 DIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNL-EL------EERME 216 (298)
Q Consensus 144 ~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~-EL------EErlr 216 (298)
.|+..|-+|...||.=|+.=...|.. |.. .-.-...+|.+|.....++=+.+..-|+-+.++.. .| |.-|.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~-isn-~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQ-VEN-KTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHH-HHh-hhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888998876654444443 322 34444567777766554443333333333333333 22 22233
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 217 QLSVEAGAWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 217 ql~aE~QaWq~~A~snEA~an~Lra~LqQvla 248 (298)
.....-+.-+.++.+|...+..|+..+.+...
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566788888888777777776654
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.47 E-value=53 Score=24.98 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERM 215 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErl 215 (298)
|++|++||-.--.+..+||.+|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333333333
No 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.15 E-value=4.2e+02 Score=32.46 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=20.5
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 130 ASSADSALLSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQE 173 (298)
Q Consensus 130 ~ss~~s~~~s~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E 173 (298)
+..++++++.++. .+..-+.+.+.||.. +.+||..||..
T Consensus 1890 ~yvTP~syLeli~-~y~~ll~~K~~el~~----~~~rl~~GL~K 1928 (3245)
T 3vkg_A 1890 NYVTPRHYLDFIN-QVVLLINEKRDQLEE----EQLHLNIGLKK 1928 (3245)
T ss_dssp CCCCHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3334455554443 445556666666653 44555555543
No 57
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.75 E-value=45 Score=23.73 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 207 RNLELEERMEQLSVEAGAWQQRARHNENMINALKV 241 (298)
Q Consensus 207 rn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra 241 (298)
+..+||.++..|..|+..+..-...=...+..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999987665554444444443
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.81 E-value=1.1e+02 Score=31.14 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 043286 151 RQDAEIDRFLKVQGDRLRQA 170 (298)
Q Consensus 151 qQ~~EID~~lr~Q~ErLR~~ 170 (298)
+-+.+++.+++...|.||..
T Consensus 78 KnsKdseqy~k~~~E~Lr~r 97 (562)
T 3ghg_A 78 KNNKDSHSLTTNIMEILRGD 97 (562)
T ss_dssp HHHHHHHHHHHHHHHTTSSH
T ss_pred hhchhHHHHHHHHHHHHHHH
Confidence 33345555554444444443
No 59
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.89 E-value=1.6e+02 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHH
Q 043286 194 LREKEAEVENINKR 207 (298)
Q Consensus 194 LReKE~EIera~rr 207 (298)
+-+.+.|++--+..
T Consensus 49 i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 49 VSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33555555554443
No 60
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.69 E-value=94 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 043286 204 INKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQ 245 (298)
.+.+..+++.++..|..|+..-+.....=+..+..|+.-|-+
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999988877666656666666654444
No 61
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.65 E-value=38 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.405 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||.+-|+.+|.+-.+|.+||..+.+|
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566667777777777777666554
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=37.24 E-value=43 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||.+.|+.+|....++.+|+..+.+|
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566777777777788887766655
No 63
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.07 E-value=36 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||.+-|+.+|.+-.+|.+||..+.+|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56667777777788888887766655
No 64
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=36.44 E-value=66 Score=26.91 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQL 218 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql 218 (298)
+|-..++++..++|.||+.|
T Consensus 46 aeY~aak~~q~~~e~rI~~L 65 (158)
T 2p4v_A 46 ADYQYNKKRLREIDRRVRYL 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666644
No 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.29 E-value=2.2e+02 Score=24.96 Aligned_cols=58 Identities=9% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQS 250 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq~ 250 (298)
-+-..+.||...+..+..|..+||.|++.+..--..+|.-.+...-+...|.+++...
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999998653
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=35.87 E-value=1.5e+02 Score=22.77 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
-|+.+..+|.+||++|+.+...-..=+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345556688899999988876655443
No 67
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.10 E-value=44 Score=22.00 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||-+-|+.+|....+|.+|+..+.+|
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34456677777777777777666655
No 68
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.94 E-value=53 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
||-+.|+.+|.+-.+|.+|+..+.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556666666677777776666553
No 69
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.28 E-value=46 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
|+.+.|+.+|.+..+|.+|+..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556667777777777778877666553
No 70
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.18 E-value=5.7e+02 Score=31.35 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 043286 148 ELQRQDAEIDRFL 160 (298)
Q Consensus 148 qLqqQ~~EID~~l 160 (298)
+|.+-..|.|.++
T Consensus 1949 ~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1949 ELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555666554
No 71
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=33.85 E-value=1.7e+02 Score=23.00 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043286 176 QANQLQTISLVEDKVIEKLREKEAEVENINKRNLE 210 (298)
Q Consensus 176 qRh~r~ll~avE~~~~~rLReKE~EIera~rrn~E 210 (298)
|+++-.-+.|-.+....+.+++|+|--+-...+||
T Consensus 53 RlRMQEeldAqAe~~keKQkqlEEeKR~qkIe~We 87 (89)
T 2q2f_A 53 RLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555666666665555444443
No 72
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.25 E-value=2e+02 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043286 205 NKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 205 ~rrn~ELEErlrql~aE~QaWq 226 (298)
..+..||+..|++|.+|+|.-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998643
No 73
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=32.17 E-value=1.5e+02 Score=22.01 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 043286 188 DKVIEKLREKEAEVENINKRNLELEE-------RMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQ 249 (298)
Q Consensus 188 ~~~~~rLReKE~EIera~rrn~ELEE-------rlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq 249 (298)
.++.++++.-..|.+.+.-+...||. +||.++.-.|. +|.....|...+..+|=.
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~-------~e~e~~~l~~~I~~ILYa 66 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE-------NEGENDPVLQRIVDILYA 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TGGGTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHhc
Confidence 45667888888888888888888888 88888766664 233334566666666643
No 74
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.43 E-value=55 Score=21.66 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||-+-|+.+|.+-.+|.+||..+.+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45566666677777777777655544
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.24 E-value=93 Score=21.91 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGA 224 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~Qa 224 (298)
.+++.+...|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555443
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.94 E-value=1.5e+02 Score=21.26 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 207 RNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 207 rn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~Lq 244 (298)
+..+|+.++..|..|+.........=+.-+..|+.-|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577777788888888777777776777777776554
No 77
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.47 E-value=54 Score=21.73 Aligned_cols=26 Identities=12% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql 218 (298)
||.+-|+.+|.+-.+|.+|+..+.+|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 55666777777777777777666554
No 78
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.97 E-value=60 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENINKRNLELEERMEQLSVEAG 223 (298)
Q Consensus 190 ~~~rLReKE~EIera~rrn~ELEErlrql~aE~Q 223 (298)
..++...++.||+.+...+.+|++.+..|+.+..
T Consensus 176 ~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 176 LKDLFNVDAFKLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678999999999999999999977653
No 79
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.90 E-value=66 Score=21.31 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLS 219 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~ 219 (298)
||.+-|+.+|.+..++.+|+..+.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566667777777777777777666553
No 80
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=29.80 E-value=2.2e+02 Score=22.92 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 043286 143 DDIDSELQRQDAEIDRFLKV-QGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENI 204 (298)
Q Consensus 143 d~L~sqLqqQ~~EID~~lr~-Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera 204 (298)
..+..+|+++...++.|+.. -.+.++..+.+...++.+.-|-.-+-+-...|.--++||...
T Consensus 55 ~~~~~~l~~~g~~~~~~~~~~~~e~~~e~~~~~A~~~vk~~lil~~ia~~e~I~vsdeev~~~ 117 (170)
T 2nsa_A 55 NEAINRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKE 117 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 44555667777777877753 456777777776666666422222222223455556665543
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.68 E-value=1.9e+02 Score=22.23 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=46.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 138 LSFIGDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 138 ~s~l~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
+..|-|-|++.|++= ++|-.|+..|...+.+.+.+.. + .+....-.-+++.-..|+.+...+..|+-.+..
T Consensus 11 mq~LNdRlAsyIdKV-----R~LEqqN~~Le~~i~~l~~~~~-~---~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 11 LQELNDRFANLIDKV-----RFLEQQNKILLAELEQLKGQGK-S---RLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccC-C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788887664 4566666666666655443322 2 222222222334445566666777777777777
Q ss_pred HHHHHHHHHH
Q 043286 218 LSVEAGAWQQ 227 (298)
Q Consensus 218 l~aE~QaWq~ 227 (298)
+..+...++.
T Consensus 82 l~~~~~~~k~ 91 (93)
T 3s4r_A 82 LAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7766665543
No 82
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.37 E-value=1.8e+02 Score=23.66 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHH
Q 043286 195 REKEAEVENINKRNLELEERMEQLSV----EAGAWQQRARHNENMINALKVNLQ 244 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~a----E~QaWq~~A~snEA~an~Lra~Lq 244 (298)
|+...+++++..-..+||+.+..-.. +.+.-+..+...|.....|+...-
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777777777777776443332 334444455555555444444333
No 83
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.06 E-value=1.9e+02 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
.-|+.+..+|.+||++|+.+...-..=+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455566788899999988876554433
No 84
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.83 E-value=2.6e+02 Score=27.23 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQ--TISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 149 LqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~--ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
|+.--++.++=|+...+.|+..|.+..+-+.-. .+..+-....+++.....-=.....-+.+||.++.-|.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk------- 126 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILR------- 126 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-------
Confidence 444445566778899999999999986655543 44555555555554444333344444555555554332
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 043286 227 QRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 227 ~~A~snEA~an~Lra~LqQvl 247 (298)
.....+=.-...|+.+|+..+
T Consensus 127 ~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 127 RKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 222222234456666665543
No 85
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.56 E-value=3.1e+02 Score=27.14 Aligned_cols=77 Identities=9% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 043286 156 IDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENM 235 (298)
Q Consensus 156 ID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~ 235 (298)
||.|+.+..+ .|..+.+. ...++-.+++-..+.+..+.+ ++++.+..+..+|.++++.+ |+.
T Consensus 32 ~~~~~~ld~~-~r~~~~~~--~~l~~~rn~~sk~i~~~k~~~-~~~~~l~~~~~~l~~~i~~l--------------e~~ 93 (485)
T 3qne_A 32 VDEIIAEYKE-WVKLRFDL--DEHNKKLNSVQKEIGKRFKAK-EDAKDLIAEKEKLSNEKKEI--------------IEK 93 (485)
T ss_dssp HHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 7888777533 22222221 222222334444444333333 24444445555555555554 444
Q ss_pred HHHHHHHHHHHHHhc
Q 043286 236 INALKVNLQHVYAQS 250 (298)
Q Consensus 236 an~Lra~LqQvlaq~ 250 (298)
+..|...|+..+...
T Consensus 94 ~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 94 EAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 455667777776654
No 86
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.38 E-value=64 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQL 218 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql 218 (298)
.|...++.+-..+|.|++.|
T Consensus 46 aey~aak~~q~~~e~ri~~L 65 (156)
T 2f23_A 46 SGLEAAKQEKARIEARIDSL 65 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 87
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.11 E-value=2.9e+02 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=13.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q 043286 224 AWQQRARHNENMINALKVNLQHVYA 248 (298)
Q Consensus 224 aWq~~A~snEA~an~Lra~LqQvla 248 (298)
.-+.+-.+++.-+..|+..+.+...
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444556666666666655544
No 88
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.61 E-value=84 Score=23.47 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHHH
Q 043286 190 VIEKLREKEAEVENI 204 (298)
Q Consensus 190 ~~~rLReKE~EIera 204 (298)
....|+.||+-|..+
T Consensus 16 ~~~~i~~Kde~I~eL 30 (67)
T 1zxa_A 16 FAKILMLKEERIKEL 30 (67)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHH
Confidence 334444444444433
No 89
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.35 E-value=2.2e+02 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
+|..-|..+.+...|.+|-|+|+..|++.-
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555566667777888888887654
No 90
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.21 E-value=1.1e+02 Score=23.14 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 204 INKRNLELEERMEQLSVEAGAWQQRARHNENMINALKV 241 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra 241 (298)
...+..+++.++..|..|+..-+.....=+..+..|+.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888776655544444444443
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.00 E-value=2.4e+02 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 208 NLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 208 n~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
-..|+.+|.+|.+|-..=+...+..=....-||..|+..
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333222222234566666654
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.70 E-value=1.3e+02 Score=22.09 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql 218 (298)
+.+.|++.+.++|.+|+.+|..|
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777654
No 93
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.05 E-value=97 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQL 218 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql 218 (298)
+|-..++++-..+|.|++.|
T Consensus 46 aeY~aak~~q~~~e~ri~~L 65 (158)
T 1grj_A 46 AEYHAAREQQGFCEGRIKDI 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34444555555555555544
No 94
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.95 E-value=2.9e+02 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVE 221 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE 221 (298)
+|.++.+||...=-+.++....+
T Consensus 87 AEfeN~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 87 ADFENFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444443333
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.46 E-value=5.5e+02 Score=26.15 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQ---TISLVEDKVIEKLREKEAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~---ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql 218 (298)
|=.|-.-|.+|..+|...| ++||..|++. ++-... .+..+-....+++..-...-.....-..||+.++.-|
T Consensus 48 GCrLQglLdkqErDltkrI----NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNRI----NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhHHhhcCcHHHHH----HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 4456666777777766554 5677777665 333332 3333333344455554422223333344788887777
Q ss_pred HHHHHH
Q 043286 219 SVEAGA 224 (298)
Q Consensus 219 ~aE~Qa 224 (298)
..+.+.
T Consensus 123 KekVdn 128 (562)
T 3ghg_A 123 KRKVIE 128 (562)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 96
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.42 E-value=6.6e+02 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq 226 (298)
.+..+||++=-++..+...+|++++..|..|++.-+
T Consensus 1001 ~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333333455555555555555444
No 97
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=25.06 E-value=2e+02 Score=20.99 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 209 LELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 209 ~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
.+.|.+||....-+|.|--.-+.+|+.|.+|-+.+-.+
T Consensus 9 ~~ve~qLkDaleknqqWlvydqqReayV~gll~~i~el 46 (58)
T 3e1r_A 9 HEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFEL 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999766544
No 98
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.06 E-value=1.4e+02 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 206 KRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 206 rrn~ELEErlrql~aE~QaWq 226 (298)
.+..+||.++.+|..|+..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356688888888888877653
No 99
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.83 E-value=5.1e+02 Score=25.99 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 043286 176 QANQLQTISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVYAQ 249 (298)
Q Consensus 176 qRh~r~ll~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvlaq 249 (298)
++..-..+..=|+..-..+++-.+.+|+-++...+=.+++-....--|+=.-.+. -+.-+..|+..++++..+
T Consensus 510 ~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 510 QRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG-FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555554444444333322222222111111111111111 234456777777777554
No 100
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.54 E-value=2.5e+02 Score=21.83 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMI 236 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~a 236 (298)
.|-+++.+....+++.+..|..|+..-+.+|..-..||
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la 75 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 101
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.42 E-value=2.4e+02 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
+|..-|..+.+..-|.+|-|+|+..|++.-
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555667777777777777766
No 102
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.35 E-value=4.1e+02 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 194 LREKEAEVENINKRNLELEERMEQLSVEA 222 (298)
Q Consensus 194 LReKE~EIera~rrn~ELEErlrql~aE~ 222 (298)
+.+++.+++++..+..+|++++..+..+-
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444443
No 103
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.17 E-value=77 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQL 218 (298)
Q Consensus 200 EIera~rrn~ELEErlrql 218 (298)
+++.+.+.|.+|++++..+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444
No 104
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=23.83 E-value=2.5e+02 Score=23.86 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRNLELEERMEQ 217 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn~ELEErlrq 217 (298)
-+..+|.+.|..|+.+++ .-||+|++
T Consensus 9 e~~e~L~~~e~l~~el~~---tWeeKl~~ 34 (184)
T 4egx_A 9 EAIERLKETEKIIAELNE---TWEEKLRR 34 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 344566666665555443 44555554
No 105
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.23 E-value=2.7e+02 Score=21.85 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREK-EAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReK-E~EIera~rrn~ELEErlrql 218 (298)
.|.|+=|..| |.|. ...|..|--+|..= +++|++ |+||.++++ |||.|=.++
T Consensus 39 ~eyE~ki~~Q-------i~Em--q~Ir~tvyeLE~~h-~kmKq~YEeEI~rLr~---eLe~r~~q~ 91 (92)
T 3vp9_A 39 KDYDFKMNQQ-------LAEM--QQIRNTVYERELTH-RKMKDAYEEEIKHLKL---GLEQRDHQI 91 (92)
T ss_dssp HHHHHHHHHH-------HHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHTC-----
T ss_pred chHHHHHHHH-------HHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHcCCCC
Confidence 3666666555 3332 22344455555543 456655 788887776 777665443
No 106
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=23.14 E-value=2.3e+02 Score=21.09 Aligned_cols=54 Identities=19% Similarity=0.395 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 043286 189 KVIEKLREKEAEVENINKRN-LELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHV 246 (298)
Q Consensus 189 ~~~~rLReKE~EIera~rrn-~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQv 246 (298)
..+++|-=.+.+|+.+...+ ..+.|+..++- ..|.... ..+|++..|..-|..+
T Consensus 30 ~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL---~~W~~~~-g~~At~~~L~~AL~~~ 84 (99)
T 1fad_A 30 RLARELKVSEAKMDGIEEKYPRSLSERVRESL---KVWKNAE-KKNASVAGLVKALRTC 84 (99)
T ss_dssp HHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHH---HHHHHHH-GGGGSHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHhcc-CCCCcHHHHHHHHHHC
Confidence 45677888999999999877 57888888887 6798887 4567777776666543
No 107
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.02 E-value=1.1e+02 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.552 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043286 204 INKRNLELEERMEQLSVEAGAWQ 226 (298)
Q Consensus 204 a~rrn~ELEErlrql~aE~QaWq 226 (298)
...++..|.+++.+|+.|-..|+
T Consensus 94 e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444566666667777776665
No 108
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.98 E-value=2.6e+02 Score=21.56 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 043286 183 ISLVEDKVIEKLREKEAEVENINKRNLELEERMEQLS-VEAGAWQQRA 229 (298)
Q Consensus 183 l~avE~~~~~rLReKE~EIera~rrn~ELEErlrql~-aE~QaWq~~A 229 (298)
|..-|......|.+-|.|=+.+......|++-.+++. .|.+-|+..-
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455667777888888888888888888888888884 5778888753
No 109
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.87 E-value=18 Score=35.18 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 206 KRNLELEERMEQLSVEAGAWQQRAR 230 (298)
Q Consensus 206 rrn~ELEErlrql~aE~QaWq~~A~ 230 (298)
....+||++.++|+.|...|...-.
T Consensus 377 ~~~~~le~~~~~~~~~~~~~~~~~~ 401 (427)
T 2qag_B 377 DEKKKLEDKKKSLDDEVNAFKQRKT 401 (427)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445889999999999999877633
No 110
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.53 E-value=2.2e+02 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql 218 (298)
..|++...++|..|..+|.+|
T Consensus 65 ~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 65 ISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777765
No 111
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.25 E-value=98 Score=22.04 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 043286 191 IEKLREKEAEVENINKRNLELEE 213 (298)
Q Consensus 191 ~~rLReKE~EIera~rrn~ELEE 213 (298)
.+++++-|.++-++++++..||+
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788888888888888888886
No 112
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.21 E-value=3.7e+02 Score=24.13 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 043286 193 KLREKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKV 241 (298)
Q Consensus 193 rLReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra 241 (298)
.|-+.=.|-+.+..+...|+|.+..|..|+..-+.+|..-+.+|..|.-
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667778888888888888888888888888888877777766554
No 113
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.82 E-value=2.8e+02 Score=21.40 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAW--------QQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaW--------q~~A~snEA~an~Lra~LqQvl 247 (298)
..|..+.+...|.+|-|+|+..|++.- ..+.+.--+-.+.|+..|.++.
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556667777777776542 2233333344455666666654
No 114
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=21.58 E-value=1.5e+02 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 043286 192 EKLREKEAEVENINKRNLELEE 213 (298)
Q Consensus 192 ~rLReKE~EIera~rrn~ELEE 213 (298)
.-||..-.++.++++++.+|+.
T Consensus 35 dyLkrvtadL~r~RrRLrelea 56 (60)
T 1pzr_A 35 RYLKRTVTELDSVTARLREVEH 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666676666664
No 115
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.41 E-value=88 Score=26.92 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 043286 154 AEIDRFLKVQGDRLRQAIQEKVQANQLQTISLVEDKVIEKLREKEAEVEN 203 (298)
Q Consensus 154 ~EID~~lr~Q~ErLR~~L~E~rqRh~r~ll~avE~~~~~rLReKE~EIer 203 (298)
.||...|..=-..-+...+++|.++...|.+.++..+. ++++.+|+.
T Consensus 13 ~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~---~~~~~~l~~ 59 (179)
T 2f42_A 13 DDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLIL---AEKERELDD 59 (179)
T ss_dssp ---------CCCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45555555555555666667777777788888877653 445545443
No 116
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=20.78 E-value=1.2e+02 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 043286 149 LQRQDAEIDRFLKVQGDRLRQAIQEKVQANQLQT 182 (298)
Q Consensus 149 LqqQ~~EID~~lr~Q~ErLR~~L~E~rqRh~r~l 182 (298)
-.+|+.++++=++...|+|.+.++..+.-|+..|
T Consensus 227 ~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 260 (261)
T 3sde_A 227 EKQQREQVDRNIREAKEKLEAEMEAARHEHQLML 260 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 4455566777777777777777766666555543
No 117
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.67 E-value=2.3e+02 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 043286 151 RQDAEIDRFLK 161 (298)
Q Consensus 151 qQ~~EID~~lr 161 (298)
.|+.+|+.+.+
T Consensus 71 EQq~ql~~I~~ 81 (175)
T 3lay_A 71 EQQATAQKIYD 81 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 118
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.62 E-value=65 Score=25.72 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 043286 190 VIEKLREKEAEVENINKRN-LELEERMEQLSVEAGAWQQRARHNENMINALKVNLQH 245 (298)
Q Consensus 190 ~~~rLReKE~EIera~rrn-~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQ 245 (298)
++++|-=++.+|+.+...+ ..+.|++.++- ..|+..- -.+|++..|-..|..
T Consensus 41 LAR~LGlse~dId~I~~~~p~dl~eq~~qmL---~~W~~r~-G~~AT~~~L~~AL~~ 93 (115)
T 2o71_A 41 MVLSLGLSQTDIYRCKANHPHNVQSQVVEAF---IRWRQRF-GKQATFQSLHNGLRA 93 (115)
T ss_dssp HHHHTTCCHHHHHHHHHHCTTCHHHHHHHHH---HHHHHHH-GGGCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHH-CcCcHHHHHHHHHHH
Confidence 4566778899999999887 57888888776 6799874 346776666555543
Done!