Query 043286
Match_columns 298
No_of_seqs 127 out of 158
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 05:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043286.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043286hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 40.3 61 0.0044 23.4 11.4 84 162-248 17-107 (124)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 33.8 91 0.0066 23.5 9.0 20 142-161 58-77 (129)
3 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 32.0 90 0.0065 22.9 8.4 49 199-247 49-97 (196)
4 d2p90a1 c.56.8.1 (A:6-274) Hyp 28.4 1E+02 0.0075 25.0 8.3 32 196-227 235-266 (269)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 28.2 55 0.004 23.9 5.8 41 200-240 2-42 (133)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 23.3 1E+02 0.0073 21.1 6.2 21 198-218 65-85 (88)
7 d1grja1 a.2.1.1 (A:2-79) GreA 20.1 75 0.0055 22.3 4.9 20 199-218 45-64 (78)
8 d2azea1 e.63.1.1 (A:199-346) T 15.8 1.4E+02 0.01 23.4 6.0 35 195-233 9-43 (148)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 15.2 1.8E+02 0.013 20.3 6.3 29 197-225 29-57 (89)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 14.7 1.6E+02 0.012 19.5 5.7 20 196-215 58-77 (79)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.34 E-value=61 Score=23.43 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=48.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHH
Q 043286 162 VQGDRLRQAIQEKVQANQLQTISL-VEDKVIEKLREKEAEVENINKRNLELEERMEQLSVEAGAW------QQRARHNEN 234 (298)
Q Consensus 162 ~Q~ErLR~~L~E~rqRh~r~ll~a-vE~~~~~rLReKE~EIera~rrn~ELEErlrql~aE~QaW------q~~A~snEA 234 (298)
...+.|+..+.+-...|.+.|-++ .+...-+ +-+.-++.+.++...+-.+|+.|...+..= -...+....
T Consensus 17 ~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~---~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~ 93 (124)
T d1ez3a_ 17 GFIDKIAENVEEVKRKHSAILASPNPDEKTKE---ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKT 93 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 333445555555555555444322 2333322 335566677777777777887776554321 122345667
Q ss_pred HHHHHHHHHHHHHH
Q 043286 235 MINALKVNLQHVYA 248 (298)
Q Consensus 235 ~an~Lra~LqQvla 248 (298)
..++|...|..++.
T Consensus 94 q~~~L~~kf~e~m~ 107 (124)
T d1ez3a_ 94 QHSTLSRKFVEVMS 107 (124)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899999988875
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.76 E-value=91 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.433 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 043286 142 GDDIDSELQRQDAEIDRFLK 161 (298)
Q Consensus 142 ~d~L~sqLqqQ~~EID~~lr 161 (298)
..+|+.-|=.-...||.||.
T Consensus 58 ~~elA~dii~kakqId~LI~ 77 (129)
T d1ykhb1 58 IDELSTDIILKTRQINKLID 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 34566666666677888885
No 3
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.03 E-value=90 Score=22.94 Aligned_cols=49 Identities=6% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALKVNLQHVY 247 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lra~LqQvl 247 (298)
.+|+.+......|-.+++.+....+.+-...+........|.+.|..++
T Consensus 49 ~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (196)
T d1fioa_ 49 HSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLI 97 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333444444445556666666666554
No 4
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=28.38 E-value=1e+02 Score=25.02 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERMEQLSVEAGAWQQ 227 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErlrql~aE~QaWq~ 227 (298)
+-+++|+++...+.||.+-+++|+.+-.+|..
T Consensus 235 ~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~~~ 266 (269)
T d2p90a1 235 KVHRQLMEQTEESSEIQRVVGALEQQYDSELE 266 (269)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhHhhhhh
Confidence 44566777777788888888888888777654
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.24 E-value=55 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 043286 200 EVENINKRNLELEERMEQLSVEAGAWQQRARHNENMINALK 240 (298)
Q Consensus 200 EIera~rrn~ELEErlrql~aE~QaWq~~A~snEA~an~Lr 240 (298)
.|+.+.....+|++++..+..+-..|+..-...+....+|.
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788888899999888888888777777665555
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.31 E-value=1e+02 Score=21.13 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043286 198 EAEVENINKRNLELEERMEQL 218 (298)
Q Consensus 198 E~EIera~rrn~ELEErlrql 218 (298)
+.|++.+.+++.+|..++.+|
T Consensus 65 ~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 65 ISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555443
No 7
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=75 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043286 199 AEVENINKRNLELEERMEQL 218 (298)
Q Consensus 199 ~EIera~rrn~ELEErlrql 218 (298)
+|-..++.+-..++.|++.|
T Consensus 45 aeY~aAKe~q~~~e~RI~eL 64 (78)
T d1grja1 45 AEYHAAREQQGFCEGRIKDI 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555554444
No 8
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.79 E-value=1.4e+02 Score=23.43 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 043286 195 REKEAEVENINKRNLELEERMEQLSVEAGAWQQRARHNE 233 (298)
Q Consensus 195 ReKE~EIera~rrn~ELEErlrql~aE~QaWq~~A~snE 233 (298)
+||+.-++++.+|.+.|.|.+-|.- +.+.+..-|.
T Consensus 9 ~E~~~~~erI~~K~~~LqeLi~Q~i----afknLV~RN~ 43 (148)
T d2azea1 9 VERQRRLERIKQKQSQLQELILQQI----AFKNLVQRNR 43 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhH
Confidence 4777888999999999998887654 4555555543
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.19 E-value=1.8e+02 Score=20.28 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043286 197 KEAEVENINKRNLELEERMEQLSVEAGAW 225 (298)
Q Consensus 197 KE~EIera~rrn~ELEErlrql~aE~QaW 225 (298)
|..-|..+.+..-|.+|-|+|+..|++.-
T Consensus 29 rk~~l~~ie~~leEA~ell~qMelEvr~~ 57 (89)
T d1vcsa1 29 KKQMVANVEKQLEEARELLEQMDLEVREI 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 44555556666668888888888887653
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.74 E-value=1.6e+02 Score=19.51 Aligned_cols=20 Identities=5% Similarity=0.363 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 043286 196 EKEAEVENINKRNLELEERM 215 (298)
Q Consensus 196 eKE~EIera~rrn~ELEErl 215 (298)
+.+.+++.+.+++.+|..+|
T Consensus 58 ~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 58 KAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555554444
Done!